Query 033514
Match_columns 117
No_of_seqs 111 out of 369
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1654 Microtubule-associated 100.0 1.6E-54 3.6E-59 298.3 12.5 116 2-117 1-116 (116)
2 cd01611 GABARAP Ubiquitin doma 100.0 7.7E-53 1.7E-57 293.2 13.7 112 6-117 1-112 (112)
3 PTZ00380 microtubule-associate 100.0 3E-50 6.5E-55 282.7 12.3 109 4-117 2-111 (121)
4 PF02991 Atg8: Autophagy prote 100.0 1.7E-49 3.6E-54 273.3 11.4 104 14-117 1-104 (104)
5 cd01612 APG12_C Ubiquitin-like 100.0 2.3E-34 4.9E-39 192.5 10.4 85 32-117 2-87 (87)
6 PF04110 APG12: Ubiquitin-like 99.9 2E-26 4.3E-31 154.0 6.2 81 36-117 6-87 (87)
7 KOG3439 Protein conjugation fa 99.9 6.4E-25 1.4E-29 151.6 9.5 85 32-117 31-116 (116)
8 PF04106 APG5: Autophagy prote 97.0 0.0014 3E-08 49.5 5.1 100 10-111 88-195 (197)
9 PF11816 DUF3337: Domain of un 95.8 0.09 2E-06 42.5 9.0 87 26-112 211-328 (331)
10 PF11976 Rad60-SLD: Ubiquitin- 92.5 0.3 6.6E-06 30.2 4.2 50 46-95 11-60 (72)
11 PF13019 Telomere_Sde2: Telome 91.9 1.4 3E-05 32.7 7.8 78 30-110 1-81 (162)
12 cd06406 PB1_P67 A PB1 domain i 91.4 1.2 2.6E-05 29.4 6.2 55 51-108 16-75 (80)
13 KOG2660 Locus-specific chromos 89.2 0.91 2E-05 37.1 5.1 73 41-114 159-235 (331)
14 KOG2976 Protein involved in au 87.3 9.1 0.0002 30.5 9.5 92 11-110 161-273 (278)
15 cd00196 UBQ Ubiquitin-like pro 86.9 3.4 7.4E-05 22.4 5.5 40 45-85 7-46 (69)
16 smart00213 UBQ Ubiquitin homol 86.7 2.4 5.1E-05 24.8 4.8 46 48-94 12-57 (64)
17 PF00240 ubiquitin: Ubiquitin 83.2 1.4 3.1E-05 26.7 2.7 46 49-95 9-54 (69)
18 PF10302 DUF2407: DUF2407 ubiq 82.7 7.9 0.00017 26.1 6.4 71 41-112 10-94 (97)
19 PF03671 Ufm1: Ubiquitin fold 81.1 6.5 0.00014 25.6 5.2 59 43-101 13-71 (76)
20 cd06398 PB1_Joka2 The PB1 doma 80.6 5.3 0.00011 26.6 4.9 52 47-98 11-72 (91)
21 cd01813 UBP_N UBP ubiquitin pr 80.1 3.5 7.6E-05 26.1 3.8 45 51-95 15-61 (74)
22 cd01763 Sumo Small ubiquitin-r 78.1 7.6 0.00016 25.1 5.0 62 27-95 9-70 (87)
23 cd01769 UBL Ubiquitin-like dom 76.8 11 0.00023 22.2 5.1 57 49-110 11-68 (69)
24 cd01806 Nedd8 Nebb8-like ubiq 76.0 9.5 0.0002 23.2 4.9 58 49-111 14-72 (76)
25 cd01798 parkin_N amino-termina 74.1 7.1 0.00015 23.9 3.9 44 50-94 13-56 (70)
26 cd05992 PB1 The PB1 domain is 73.8 18 0.0004 22.3 7.0 63 47-109 11-79 (81)
27 cd01790 Herp_N Homocysteine-re 73.4 22 0.00048 23.1 7.1 62 49-111 15-79 (79)
28 cd01807 GDX_N ubiquitin-like d 72.0 8 0.00017 23.9 3.8 44 50-94 15-58 (74)
29 cd01805 RAD23_N Ubiquitin-like 70.1 10 0.00022 23.3 4.0 57 49-110 14-73 (77)
30 PF08154 NLE: NLE (NUC135) dom 67.9 26 0.00056 21.6 6.2 42 44-85 14-56 (65)
31 smart00666 PB1 PB1 domain. Pho 67.2 27 0.00059 21.6 6.7 63 46-108 11-78 (81)
32 cd01809 Scythe_N Ubiquitin-lik 66.7 18 0.00039 21.7 4.5 45 49-94 14-58 (72)
33 cd01803 Ubiquitin Ubiquitin. U 66.0 17 0.00036 22.1 4.3 58 49-111 14-72 (76)
34 cd01776 Rin1_RA Ubiquitin doma 65.9 15 0.00033 24.5 4.2 37 48-84 16-54 (87)
35 PF12752 SUZ: SUZ domain; Int 65.1 7.3 0.00016 23.8 2.5 19 7-25 35-53 (59)
36 cd01812 BAG1_N Ubiquitin-like 63.8 16 0.00035 21.9 3.9 44 50-94 14-57 (71)
37 cd06396 PB1_NBR1 The PB1 domai 63.5 38 0.00083 22.2 5.8 62 46-110 10-78 (81)
38 PF12436 USP7_ICP0_bdg: ICP0-b 62.1 10 0.00022 29.3 3.4 46 49-94 88-138 (249)
39 cd06407 PB1_NLP A PB1 domain i 62.1 19 0.00042 23.4 4.2 54 46-99 10-68 (82)
40 cd01796 DDI1_N DNA damage indu 62.0 14 0.00031 22.8 3.4 56 49-108 13-69 (71)
41 cd01799 Hoil1_N Ubiquitin-like 61.3 28 0.00061 22.0 4.8 45 49-94 16-60 (75)
42 cd01791 Ubl5 UBL5 ubiquitin-li 60.4 23 0.00049 22.3 4.2 43 51-94 17-59 (73)
43 cd01808 hPLIC_N Ubiquitin-like 59.8 37 0.00081 20.6 5.7 57 49-110 13-70 (71)
44 PF00788 RA: Ras association ( 59.7 40 0.00087 21.0 7.7 66 44-109 15-89 (93)
45 cd01794 DC_UbP_C dendritic cel 59.3 24 0.00052 21.9 4.2 45 49-94 12-56 (70)
46 PF00837 T4_deiodinase: Iodoth 57.6 15 0.00033 28.8 3.6 35 4-39 158-192 (237)
47 PTZ00044 ubiquitin; Provisiona 56.5 31 0.00067 21.1 4.3 45 49-94 14-58 (76)
48 cd01810 ISG15_repeat2 ISG15 ub 56.4 24 0.00053 21.7 3.9 58 50-111 13-70 (74)
49 cd01793 Fubi Fubi ubiquitin-li 54.2 40 0.00087 20.7 4.6 59 47-109 10-68 (74)
50 cd01792 ISG15_repeat1 ISG15 ub 52.7 25 0.00055 22.1 3.5 58 51-112 18-77 (80)
51 cd01795 USP48_C USP ubiquitin- 52.6 30 0.00065 24.0 4.0 26 50-75 19-44 (107)
52 cd01800 SF3a120_C Ubiquitin-li 49.7 34 0.00074 21.3 3.7 58 50-111 12-69 (76)
53 PF14533 USP7_C2: Ubiquitin-sp 49.7 14 0.00031 27.9 2.3 51 45-95 33-90 (213)
54 cd01804 midnolin_N Ubiquitin-l 47.4 69 0.0015 20.0 5.4 59 49-112 15-73 (78)
55 PF09358 UBA_e1_C: Ubiquitin-a 45.8 19 0.00042 25.1 2.3 53 47-99 34-94 (125)
56 cd01815 BMSC_UbP_N Ubiquitin-l 45.6 54 0.0012 21.2 4.2 42 52-94 17-61 (75)
57 TIGR01682 moaD molybdopterin c 43.2 27 0.00058 21.9 2.5 39 49-87 19-60 (80)
58 cd01766 Ufm1 Urm1-like ubiquit 41.5 45 0.00097 21.9 3.3 58 43-101 13-71 (82)
59 PRK13669 hypothetical protein; 41.4 21 0.00046 23.4 1.8 27 75-101 45-74 (78)
60 PF11543 UN_NPL4: Nuclear pore 41.0 22 0.00048 22.9 1.9 57 49-109 17-78 (80)
61 PF00564 PB1: PB1 domain; Int 40.8 86 0.0019 19.3 4.9 52 50-101 16-71 (84)
62 PF09379 FERM_N: FERM N-termin 39.7 75 0.0016 19.4 4.2 35 47-81 8-42 (80)
63 cd01768 RA RA (Ras-associating 39.7 83 0.0018 19.7 4.5 56 45-100 12-74 (87)
64 COG3343 RpoE DNA-directed RNA 38.7 48 0.001 24.9 3.5 47 55-117 30-77 (175)
65 PF05717 TnpB_IS66: IS66 Orf2 38.3 49 0.0011 22.5 3.3 27 57-83 16-43 (107)
66 PF01886 DUF61: Protein of unk 38.1 85 0.0018 22.3 4.6 56 16-80 46-111 (132)
67 KOG1209 1-Acyl dihydroxyaceton 37.0 74 0.0016 25.4 4.5 52 45-100 54-110 (289)
68 PRK06437 hypothetical protein; 36.5 50 0.0011 20.4 2.9 38 50-92 15-52 (67)
69 PRK04115 hypothetical protein; 36.3 1.5E+02 0.0032 21.4 5.7 55 17-80 50-113 (137)
70 cd06408 PB1_NoxR The PB1 domai 36.2 63 0.0014 21.4 3.5 50 49-100 15-68 (86)
71 cd00754 MoaD Ubiquitin domain 35.7 36 0.00079 20.8 2.2 41 49-89 19-62 (80)
72 PF14560 Ubiquitin_2: Ubiquiti 35.5 49 0.0011 21.1 2.9 33 48-80 16-49 (87)
73 PF12436 USP7_ICP0_bdg: ICP0-b 35.2 84 0.0018 24.3 4.6 53 28-83 175-227 (249)
74 cd00952 CHBPH_aldolase Trans-o 35.2 50 0.0011 26.2 3.4 99 10-112 58-172 (309)
75 cd01775 CYR1_RA Ubiquitin doma 35.1 92 0.002 21.2 4.2 35 49-83 16-52 (97)
76 PRK08364 sulfur carrier protei 34.7 42 0.00092 20.7 2.4 37 49-90 17-53 (70)
77 TIGR01051 topA_bact DNA topois 34.7 1.3E+02 0.0027 26.5 6.1 50 53-114 250-300 (610)
78 cd01802 AN1_N ubiquitin-like d 34.5 83 0.0018 21.1 4.0 75 27-111 25-99 (103)
79 PF06970 RepA_N: Replication i 34.1 20 0.00044 23.0 0.9 16 99-114 42-57 (76)
80 PRK02363 DNA-directed RNA poly 32.7 55 0.0012 23.2 3.0 50 53-117 17-66 (129)
81 PF01704 UDPGP: UTP--glucose-1 32.6 84 0.0018 26.5 4.5 56 12-86 88-143 (420)
82 PF08825 E2_bind: E2 binding d 32.4 54 0.0012 21.5 2.7 45 51-95 2-59 (84)
83 TIGR02313 HpaI-NOT-DapA 2,4-di 31.6 61 0.0013 25.5 3.3 102 9-113 49-166 (294)
84 cd00408 DHDPS-like Dihydrodipi 31.4 63 0.0014 24.8 3.3 99 9-112 46-160 (281)
85 cd00951 KDGDH 5-dehydro-4-deox 31.2 62 0.0013 25.3 3.3 99 9-113 49-161 (289)
86 PF05990 DUF900: Alpha/beta hy 31.0 1E+02 0.0022 23.4 4.4 51 59-111 2-55 (233)
87 COG2002 AbrB Regulators of sta 30.8 60 0.0013 21.1 2.7 21 63-83 20-40 (89)
88 cd06411 PB1_p51 The PB1 domain 30.7 1.6E+02 0.0034 19.3 6.0 58 51-108 12-75 (78)
89 PF04441 Pox_VERT_large: Poxvi 30.7 58 0.0013 29.1 3.3 54 55-113 59-123 (700)
90 PF11470 TUG-UBL1: GLUT4 regul 30.4 80 0.0017 19.7 3.1 40 44-84 5-44 (65)
91 KOG3483 Uncharacterized conser 30.2 87 0.0019 20.7 3.3 59 42-101 23-82 (94)
92 cd01797 NIRF_N amino-terminal 29.9 93 0.002 19.6 3.5 57 52-112 19-75 (78)
93 TIGR00683 nanA N-acetylneurami 29.6 69 0.0015 25.1 3.3 100 10-113 51-166 (290)
94 smart00148 PLCXc Phospholipase 29.4 69 0.0015 22.3 3.0 33 53-85 66-98 (135)
95 cd06401 PB1_TFG The PB1 domain 29.4 1.5E+02 0.0033 19.5 4.4 22 49-70 13-35 (81)
96 PF07929 PRiA4_ORF3: Plasmid p 28.9 1.1E+02 0.0025 22.0 4.2 29 47-75 19-47 (179)
97 PRK03170 dihydrodipicolinate s 28.6 72 0.0016 24.7 3.3 100 9-113 50-165 (292)
98 PRK04147 N-acetylneuraminate l 28.5 72 0.0016 24.9 3.3 29 10-38 54-82 (293)
99 cd01938 ADPGK_ADPPFK ADP-depen 28.5 78 0.0017 26.9 3.7 41 1-41 216-256 (445)
100 PRK11347 antitoxin ChpS; Provi 28.3 1.3E+02 0.0027 19.6 3.9 38 63-100 18-60 (83)
101 smart00314 RA Ras association 28.3 1.6E+02 0.0034 18.5 5.9 39 43-81 13-54 (90)
102 PRK03620 5-dehydro-4-deoxygluc 27.6 78 0.0017 25.0 3.4 99 9-113 56-168 (303)
103 PHA01078 putative upper collar 27.4 95 0.0021 24.3 3.6 45 60-108 20-65 (249)
104 PF00701 DHDPS: Dihydrodipicol 26.9 67 0.0015 24.8 2.8 100 9-113 50-165 (289)
105 cd01782 AF6_RA_repeat1 Ubiquit 26.9 1.3E+02 0.0029 20.9 4.0 36 48-83 38-79 (112)
106 cd01789 Alp11_N Ubiquitin-like 26.8 1.6E+02 0.0035 18.7 4.2 33 51-83 18-51 (84)
107 PF05768 DUF836: Glutaredoxin- 26.6 63 0.0014 20.2 2.2 18 20-37 40-57 (81)
108 PRK10953 cysJ sulfite reductas 26.2 4.5E+02 0.0098 23.1 8.5 87 26-113 432-522 (600)
109 PF04014 Antitoxin-MazE: Antid 26.0 95 0.0021 17.5 2.7 21 63-83 13-33 (47)
110 PF12108 SF3a60_bindingd: Spli 25.8 82 0.0018 16.6 2.2 18 11-28 11-28 (28)
111 smart00295 B41 Band 4.1 homolo 25.7 1.9E+02 0.0042 20.4 4.9 51 47-97 15-71 (207)
112 TIGR01683 thiS thiamine biosyn 25.6 1.4E+02 0.0031 17.8 3.6 34 47-85 5-38 (64)
113 PF11767 SET_assoc: Histone ly 25.5 1.6E+02 0.0035 18.4 3.9 55 49-111 5-62 (66)
114 PRK11130 moaD molybdopterin sy 25.3 75 0.0016 20.0 2.4 36 54-90 24-64 (81)
115 PF14060 DUF4252: Domain of un 25.2 91 0.002 21.7 3.0 24 88-111 20-43 (155)
116 cd00950 DHDPS Dihydrodipicolin 25.1 93 0.002 23.9 3.3 100 9-113 49-164 (284)
117 PLN02417 dihydrodipicolinate s 25.0 94 0.002 24.2 3.3 97 10-113 51-163 (280)
118 PF15243 ANAPC15: Anaphase-pro 24.8 76 0.0016 21.3 2.4 20 13-32 35-54 (92)
119 PF14836 Ubiquitin_3: Ubiquiti 24.7 1.4E+02 0.0031 19.8 3.7 44 51-94 19-66 (88)
120 PRK08577 hypothetical protein; 24.6 80 0.0017 21.8 2.6 21 63-83 19-39 (136)
121 KOG1651 Glutathione peroxidase 24.4 1.1E+02 0.0023 23.0 3.3 36 77-113 36-76 (171)
122 PF08216 CTNNBL: Catenin-beta- 24.2 68 0.0015 22.2 2.1 20 10-29 33-52 (108)
123 COG1019 Predicted nucleotidylt 24.2 3E+02 0.0065 20.4 7.4 66 10-75 54-122 (158)
124 PF07293 DUF1450: Protein of u 24.2 62 0.0013 21.0 1.8 27 75-101 45-74 (78)
125 cd03483 MutL_Trans_MLH1 MutL_T 23.8 78 0.0017 21.7 2.4 26 74-99 47-75 (127)
126 smart00537 DCX Domain in the D 23.7 2.1E+02 0.0046 18.5 5.7 71 31-113 5-81 (89)
127 cd04117 Rab15 Rab15 subfamily. 23.6 1E+02 0.0023 21.1 3.1 34 8-42 84-117 (161)
128 cd00137 PI-PLCc Catalytic doma 23.6 1.1E+02 0.0023 24.0 3.4 52 55-108 73-127 (274)
129 TIGR00601 rad23 UV excision re 23.1 3.2E+02 0.007 22.7 6.3 59 50-112 15-76 (378)
130 PF06395 CDC24: CDC24 Calponin 22.8 59 0.0013 21.7 1.5 23 56-79 44-66 (89)
131 cd00954 NAL N-Acetylneuraminic 22.4 1.1E+02 0.0024 23.8 3.3 30 9-38 50-79 (288)
132 COG2879 Uncharacterized small 22.2 64 0.0014 20.4 1.5 14 19-32 29-42 (65)
133 PF00501 AMP-binding: AMP-bind 21.9 2E+02 0.0043 22.5 4.7 48 20-84 2-56 (417)
134 PF02597 ThiS: ThiS family; I 21.9 1.4E+02 0.003 17.9 3.1 40 47-86 13-53 (77)
135 PRK13125 trpA tryptophan synth 21.8 92 0.002 23.7 2.7 15 101-117 151-165 (244)
136 COG0329 DapA Dihydrodipicolina 21.2 1.2E+02 0.0025 24.1 3.2 31 9-39 53-83 (299)
137 PF01650 Peptidase_C13: Peptid 21.2 1.2E+02 0.0025 23.7 3.2 31 53-83 77-115 (256)
138 PF00388 PI-PLC-X: Phosphatidy 21.0 68 0.0015 22.2 1.7 32 54-85 65-96 (146)
139 PF13905 Thioredoxin_8: Thiore 21.0 1.6E+02 0.0035 18.1 3.3 22 90-111 21-42 (95)
140 TIGR03249 KdgD 5-dehydro-4-deo 21.0 1.3E+02 0.0027 23.6 3.4 29 9-37 54-82 (296)
141 KOG0010 Ubiquitin-like protein 20.8 1.7E+02 0.0036 25.5 4.2 53 47-104 26-78 (493)
142 PF01119 DNA_mis_repair: DNA m 20.4 71 0.0015 21.5 1.6 28 72-99 37-67 (119)
143 PRK08123 histidinol-phosphatas 20.3 1.2E+02 0.0026 23.4 3.1 24 11-34 63-86 (270)
144 PF09138 Urm1: Urm1 (Ubiquitin 20.2 53 0.0011 22.2 0.9 30 49-79 21-53 (96)
145 PF02645 DegV: Uncharacterised 20.0 1E+02 0.0022 23.9 2.6 58 46-113 32-91 (280)
No 1
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=100.00 E-value=1.6e-54 Score=298.25 Aligned_cols=116 Identities=72% Similarity=1.166 Sum_probs=114.0
Q ss_pred CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514 2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (117)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V 81 (117)
|+++||++||||+|++|+++||+|||+|||||||+..++++|+|||+|||||+++|||||+.+||+||+|+|++|+||||
T Consensus 1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV 80 (116)
T KOG1654|consen 1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV 80 (116)
T ss_pred CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
||.+|+.+++|++||+++||+||||||+||+|+|||
T Consensus 81 n~~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG 116 (116)
T KOG1654|consen 81 NNTSPPTSATMSALYEEEKDEDGFLYMTYSGENTFG 116 (116)
T ss_pred cCcCCcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence 999998899999999999999999999999999999
No 2
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=100.00 E-value=7.7e-53 Score=293.24 Aligned_cols=112 Identities=72% Similarity=1.206 Sum_probs=111.1
Q ss_pred ccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514 6 FKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (117)
Q Consensus 6 fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~ 85 (117)
||++||||+|++|+++||+|||++||||||+++++++|+|+++||+||+++||+||+.+||++|+|++++||||||||++
T Consensus 1 fk~~~s~e~R~~e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~ 80 (112)
T cd01611 1 FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSL 80 (112)
T ss_pred CccccCHHHHHHHHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 86 p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
|++|++||+||++|||+||||||+||+++|||
T Consensus 81 p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~tfG 112 (112)
T cd01611 81 PPTSATMSQLYEEHKDEDGFLYMTYSSEETFG 112 (112)
T ss_pred CCchhHHHHHHHHhCCCCCEEEEEEeccccCC
Confidence 99999999999999999999999999999999
No 3
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=100.00 E-value=3e-50 Score=282.73 Aligned_cols=109 Identities=34% Similarity=0.595 Sum_probs=106.3
Q ss_pred ccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceE-EecCCCchHHHHHHHHHhhCCCCCceEEEEEc
Q 033514 4 SNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 82 (117)
Q Consensus 4 ~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kf-lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn 82 (117)
++||++||||+|++|+++||+|||++||||||++++++ +++|| |||+++||+||+.+||+||+|++++ +|||||
T Consensus 2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVn 76 (121)
T PTZ00380 2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIE 76 (121)
T ss_pred cchhhcCCHHHHHHHHHHHHHHCCCccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEEC
Confidence 68999999999999999999999999999999998887 79999 6999999999999999999999999 999999
Q ss_pred CCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 83 NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 83 ~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
|++|+++++||+||++|||+||||||+||+++|||
T Consensus 77 n~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~e~tFG 111 (121)
T PTZ00380 77 GSTPAVTATVGDIADACKRDDGFLYVSVRTEQAMG 111 (121)
T ss_pred CccCCccchHHHHHHHhcCCCCeEEEEEccccccc
Confidence 99999999999999999999999999999999999
No 4
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=100.00 E-value=1.7e-49 Score=273.30 Aligned_cols=104 Identities=64% Similarity=1.142 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHH
Q 033514 14 KRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS 93 (117)
Q Consensus 14 ~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~ 93 (117)
+|++|+++||+|||+|||||||+++++++|+||++|||||.++||+||+.+||++|++++++||||||||++|+++++||
T Consensus 1 ~R~~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 1 ERKEESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred CcHHHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCCCCeEEEEecCcccCC
Q 033514 94 TIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 94 ~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
+||++|||+||||||+||++++||
T Consensus 81 elY~~~kdeDGFLY~~Ys~e~tFG 104 (104)
T PF02991_consen 81 ELYEKYKDEDGFLYMTYSSEETFG 104 (104)
T ss_dssp HHHHHHB-TTSSEEEEEESSSSBC
T ss_pred HHHHHhCCCCCeEEEEeccccccC
Confidence 999999999999999999999999
No 5
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=100.00 E-value=2.3e-34 Score=192.51 Aligned_cols=85 Identities=24% Similarity=0.469 Sum_probs=79.4
Q ss_pred EEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCC-CCCccchHHHHHhHcCCCCCeEEEEe
Q 033514 32 VIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVTY 110 (117)
Q Consensus 32 VIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~-~p~~~~~l~~lY~~~kd~DGfLyv~Y 110 (117)
|.|.-.+.|++|+|+++||+||+++||++|+.+||++|++++++||||||||+ .|++|++||+||++| |+||||||+|
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y 80 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY 80 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence 44444556899999999999999999999999999999999999999999997 589999999999999 8999999999
Q ss_pred cCcccCC
Q 033514 111 SGENTFG 117 (117)
Q Consensus 111 s~~~~fG 117 (117)
|.++|||
T Consensus 81 s~~~afG 87 (87)
T cd01612 81 CKTVAFG 87 (87)
T ss_pred eCccccC
Confidence 9999999
No 6
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=99.93 E-value=2e-26 Score=154.04 Aligned_cols=81 Identities=23% Similarity=0.502 Sum_probs=60.0
Q ss_pred ccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCeEEEEecCcc
Q 033514 36 KAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLYVTYSGEN 114 (117)
Q Consensus 36 ~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~ 114 (117)
-.+-+++|.|+++||.|.++.|++.++.+|||+|+++++++||+|||+++ |++|+++|+||+||+ .||.|.|+||.++
T Consensus 6 fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~-~~~~Liv~Ys~t~ 84 (87)
T PF04110_consen 6 FKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG-TNGELIVSYSKTP 84 (87)
T ss_dssp EEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEEEESSS
T ss_pred EEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC-CCCEEEEEEeccc
Confidence 33448999999999999999999999999999999999999999999966 999999999999997 7999999999999
Q ss_pred cCC
Q 033514 115 TFG 117 (117)
Q Consensus 115 ~fG 117 (117)
|||
T Consensus 85 A~G 87 (87)
T PF04110_consen 85 AWG 87 (87)
T ss_dssp ---
T ss_pred ccC
Confidence 999
No 7
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.4e-25 Score=151.57 Aligned_cols=85 Identities=25% Similarity=0.497 Sum_probs=78.5
Q ss_pred EEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCeEEEEe
Q 033514 32 VIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLYVTY 110 (117)
Q Consensus 32 VIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGfLyv~Y 110 (117)
|.|.-.+-+++|.|+++||.|+.+.||+.++.+|||+|+|.+.++|||||||++ |++|+.+|+||+||+ .||.|.++|
T Consensus 31 V~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~-~d~~Lvl~Y 109 (116)
T KOG3439|consen 31 VQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG-TDGKLVLNY 109 (116)
T ss_pred EEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC-CCCEEEEEE
Confidence 334334458999999999999999999999999999999999999999999977 999999999999995 699999999
Q ss_pred cCcccCC
Q 033514 111 SGENTFG 117 (117)
Q Consensus 111 s~~~~fG 117 (117)
|...|||
T Consensus 110 c~s~A~G 116 (116)
T KOG3439|consen 110 CISVAWG 116 (116)
T ss_pred eeecccC
Confidence 9999999
No 8
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.
Probab=97.01 E-value=0.0014 Score=49.46 Aligned_cols=100 Identities=14% Similarity=0.245 Sum_probs=49.8
Q ss_pred ccHHHHHHHHHHHH---hhCCCcccEEEEccCCCCCCCCccceEEec---CCCchHHHHHHHHHhh--CCCCCceEEEEE
Q 033514 10 HEFEKRRAEAERIR---EKYPDRIPVIVEKAERSDIPTIDKKKYLVP---ADLTVGQFVYVIRKRI--KLSAEKAIFIFV 81 (117)
Q Consensus 10 ~~~e~R~~e~~~i~---~k~p~~ipVIve~~~~~~~p~l~k~Kflvp---~~~tv~~~~~~lrk~L--~l~~~~slfl~V 81 (117)
+.|++=..-..++. ..-..+|||.|-.... .|.++..--... ...|++++...+=-.+ .-+......+++
T Consensus 88 ~~~~~f~~i~~kl~~~~~~~~r~IPiRiy~~~~--~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~ii 165 (197)
T PF04106_consen 88 HDFDQFWSINSKLMPPDPSKFRHIPIRIYLPGS--VPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVII 165 (197)
T ss_dssp T-HHHHHHHHHHHS----SS-SB--EEEEE-SS----EE----B----TT---BTGGGHHHHHTTT--T------EEEEE
T ss_pred hCHHHHHHHHHHHHhhcCCCcceeEEEEEeCCC--cceEecccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEE
Confidence 44444444555555 5667899999977643 333332221211 2346776655443222 112345567888
Q ss_pred cCCCCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
++.-++.|+.|..||+++.-.||||||.-.
T Consensus 166 hGI~ipldtpl~~l~~~l~~~D~FLhivv~ 195 (197)
T PF04106_consen 166 HGIEIPLDTPLQWLYENLSYPDGFLHIVVR 195 (197)
T ss_dssp TTEEE-TTSBHHHHHHHH--TTS-EEEEEE
T ss_pred eCeeCCCCCcHHHHHHHccCCCCeEEEEEE
Confidence 998788899999999999999999999753
No 9
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=95.79 E-value=0.09 Score=42.46 Aligned_cols=87 Identities=16% Similarity=0.281 Sum_probs=71.3
Q ss_pred CCCcccEEEEccCCCCCCCCccc-----------------eEEecCCCchHHHHHHHHHhh--------------CCCCC
Q 033514 26 YPDRIPVIVEKAERSDIPTIDKK-----------------KYLVPADLTVGQFVYVIRKRI--------------KLSAE 74 (117)
Q Consensus 26 ~p~~ipVIve~~~~~~~p~l~k~-----------------Kflvp~~~tv~~~~~~lrk~L--------------~l~~~ 74 (117)
-+.||+-++.++..+..|.+... |.-.+.-+.|.-+...|-.|+ .+.++
T Consensus 211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~ 290 (331)
T PF11816_consen 211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE 290 (331)
T ss_pred CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence 34677788888875555555555 888999999999999999999 45788
Q ss_pred ceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 75 KAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 75 ~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
+.|=|+||+.+.+++++|+.|=.-+=-..|-|.+.|..
T Consensus 291 e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~ 328 (331)
T PF11816_consen 291 EWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR 328 (331)
T ss_pred ceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence 99999999999888999999988854458899999964
No 10
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=92.45 E-value=0.3 Score=30.15 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=38.8
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
+...|.|..+.+++.++...+++.++++.+++-|+.++.-..++.|++++
T Consensus 11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 35678999999999999999999999985677777777555555666654
No 11
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=91.92 E-value=1.4 Score=32.67 Aligned_cols=78 Identities=18% Similarity=0.396 Sum_probs=56.1
Q ss_pred ccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc-C-CC-CCccchHHHHHhHcCCCCCeE
Q 033514 30 IPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N-VL-PPTGAIMSTIYDEKKDEDGFL 106 (117)
Q Consensus 30 ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn-~-~~-p~~~~~l~~lY~~~kd~DGfL 106 (117)
|-|+|...+.-.+| ....+-+|.+.|++++...|..++.......++|+++ | .+ +..+..++.+...-.+. +|+
T Consensus 1 i~Vlvss~~g~~lp--~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~-~~~ 77 (162)
T PF13019_consen 1 INVLVSSFDGLTLP--PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDS-DFI 77 (162)
T ss_pred CeEEEecCCCCCCC--CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCC-Cce
Confidence 34667555432222 3446779999999999999999999988877888886 4 55 57777888888777543 676
Q ss_pred EEEe
Q 033514 107 YVTY 110 (117)
Q Consensus 107 yv~Y 110 (117)
.+..
T Consensus 78 ~l~l 81 (162)
T PF13019_consen 78 TLRL 81 (162)
T ss_pred EEEE
Confidence 6654
No 12
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.35 E-value=1.2 Score=29.37 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=42.7
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEEEc----C-CCCCccchHHHHHhHcCCCCCeEEE
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD----N-VLPPTGAIMSTIYDEKKDEDGFLYV 108 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn----~-~~p~~~~~l~~lY~~~kd~DGfLyv 108 (117)
-||.+++++++...|++||++.+ +.+-|.-. + ..|-.|+.|...+.+=+ ||-|-+
T Consensus 16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~--~~~lTL 75 (80)
T cd06406 16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAK--DGCLTL 75 (80)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhc--CCeEEE
Confidence 48999999999999999999984 45666553 2 23567889999998876 666654
No 13
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=89.19 E-value=0.91 Score=37.13 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=60.2
Q ss_pred CCCCCccceEE-ecCCCchHHHHHHHHHhhC-CCCCceEEEEEcCCCCCccchHHHHHhHcCCC--CCeEEEEecCcc
Q 033514 41 DIPTIDKKKYL-VPADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE--DGFLYVTYSGEN 114 (117)
Q Consensus 41 ~~p~l~k~Kfl-vp~~~tv~~~~~~lrk~L~-l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~--DGfLyv~Ys~~~ 114 (117)
.++.|. ++|+ ++...|+.++..++++++. ++....+=+++|+.+..-+.||.++.-.+... ||-|-+.|...+
T Consensus 159 ~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p 235 (331)
T KOG2660|consen 159 TLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVKP 235 (331)
T ss_pred cccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEecccc
Confidence 355555 5664 8999999999999999998 77777777888988899999999998887664 999999998543
No 14
>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=9.1 Score=30.53 Aligned_cols=92 Identities=14% Similarity=0.305 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHhh----CCCcccEEEEcc--CC-------CCCCCCccceEEecCCCchHHHHHHHHHhhC-------
Q 033514 11 EFEKRRAEAERIREK----YPDRIPVIVEKA--ER-------SDIPTIDKKKYLVPADLTVGQFVYVIRKRIK------- 70 (117)
Q Consensus 11 ~~e~R~~e~~~i~~k----~p~~ipVIve~~--~~-------~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~------- 70 (117)
.|++=-.-+.++..- .+-+||+.+-.. +. ...|. +. .++-...-+-.++.+++.
T Consensus 161 ~fd~F~~Is~Kl~~s~e~n~~r~IPL~iy~sq~~t~r~f~~~~~~P~-----~~-~~d~~~stlge~l~d~~~~s~~s~d 234 (278)
T KOG2976|consen 161 NFDDFWEISNKLMESVEDNRSRHIPLRIYTSQVKTARDFRTSLTFPC-----IS-QPDGSLSTLGEFLKDRLPDSLDSKD 234 (278)
T ss_pred cHHHHHHHHHHHHhhccccccccceeEeeccccccccchhhccccce-----ee-cCchhhhhhhHHHHhhcccccCccc
Confidence 344444445555554 889999999733 11 22331 11 223333444445566664
Q ss_pred -CCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEe
Q 033514 71 -LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 110 (117)
Q Consensus 71 -l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Y 110 (117)
...++. +.+.+--++..+.+..||+.....||||||+.
T Consensus 235 ~~~~~~~--viihGIei~l~tpL~~l~~~L~ypD~FLHI~l 273 (278)
T KOG2976|consen 235 DINGNDP--VIIHGIEIPLHTPLYWLYSNLSYPDGFLHIVL 273 (278)
T ss_pred cccccCc--eEEecccccccchHHHHHhhccCCCcceEEEE
Confidence 112233 44555557888899999999999999999975
No 15
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=86.89 E-value=3.4 Score=22.36 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=31.2
Q ss_pred CccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514 45 IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (117)
Q Consensus 45 l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~ 85 (117)
-....+.++.+.|++++...|..+.+.. .+...|++|+..
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~-~~~~~l~~~~~~ 46 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLP-PEQQRLLVNGKI 46 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcC-hHHeEEEECCeE
Confidence 3456678889999999999999999854 445677777754
No 16
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=86.74 E-value=2.4 Score=24.80 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=34.7
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
..+-|+.+.|++++...|.++.+++++. +=|+.++.....+.+|++
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~ 57 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD 57 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence 3467999999999999999999997664 455567765555666654
No 17
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=83.24 E-value=1.4 Score=26.68 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=37.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
.+-|+.+.||+++...|..+.++++++ +-|+.++.....+.+|+++
T Consensus 9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~-~~L~~~G~~L~d~~tL~~~ 54 (69)
T PF00240_consen 9 TLEVDPDDTVADLKQKIAEETGIPPEQ-QRLIYNGKELDDDKTLSDY 54 (69)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSTGGG-EEEEETTEEESTTSBTGGG
T ss_pred EEEECCCCCHHHhhhhccccccccccc-ceeeeeeecccCcCcHHHc
Confidence 457999999999999999999988775 4566677666777888765
No 18
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=82.66 E-value=7.9 Score=26.09 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=47.1
Q ss_pred CCCCCccceEEecCCCchHHHHHHHHHhh-CCCCCceEEEEEcCCCCCccchHHHHHhHc---------CCCCC----eE
Q 033514 41 DIPTIDKKKYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNVLPPTGAIMSTIYDEK---------KDEDG----FL 106 (117)
Q Consensus 41 ~~p~l~k~Kflvp~~~tv~~~~~~lrk~L-~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~---------kd~DG----fL 106 (117)
.+|+|.=. +--|.+.|+.++...||.++ .-.....|=|.-++.+.+.++.++..-... |..++ -.
T Consensus 10 sipDl~L~-I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~~~~~~~~~gk~~~~~~~~~~ 88 (97)
T PF10302_consen 10 SIPDLPLD-IPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLPTARSSKGKGKAPERQEAPRI 88 (97)
T ss_pred CCCCceee-cCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccccccCccccCcCccCCCCCeE
Confidence 67774310 01458899999999999999 445566777777887765666565554444 23333 78
Q ss_pred EEEecC
Q 033514 107 YVTYSG 112 (117)
Q Consensus 107 yv~Ys~ 112 (117)
||+++.
T Consensus 89 yIhCsI 94 (97)
T PF10302_consen 89 YIHCSI 94 (97)
T ss_pred EEEEec
Confidence 888764
No 19
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=81.10 E-value=6.5 Score=25.60 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=43.7
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC
Q 033514 43 PTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD 101 (117)
Q Consensus 43 p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd 101 (117)
|.+.-+.+-||++..+..++.+--...++++.++.-+--++.--.+.++-|+++-+|..
T Consensus 13 p~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGs 71 (76)
T PF03671_consen 13 PKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGS 71 (76)
T ss_dssp STS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-S
T ss_pred CCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCc
Confidence 56667888999999999999999999999999883332223336778899999999964
No 20
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=80.57 E-value=5.3 Score=26.63 Aligned_cols=52 Identities=12% Similarity=0.244 Sum_probs=36.1
Q ss_pred cceEEecC-----CCchHHHHHHHHHhhCCCCCceEEE-EEcC--C-C-CCccchHHHHHhH
Q 033514 47 KKKYLVPA-----DLTVGQFVYVIRKRIKLSAEKAIFI-FVDN--V-L-PPTGAIMSTIYDE 98 (117)
Q Consensus 47 k~Kflvp~-----~~tv~~~~~~lrk~L~l~~~~slfl-~Vn~--~-~-p~~~~~l~~lY~~ 98 (117)
...|.+|. +.++.++..-|++++++.+...+-| |-+. . + ...|..+.+.-+.
T Consensus 11 ~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 11 LRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 45778885 7999999999999999987444443 5442 2 2 3666666655555
No 21
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=80.11 E-value=3.5 Score=26.09 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=37.4
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEE--EcCCCCCccchHHHH
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIF--VDNVLPPTGAIMSTI 95 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~--Vn~~~p~~~~~l~~l 95 (117)
=|+.+.|+++|...|....+++++.-=.+| +.+..+..+.+++++
T Consensus 15 ~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~ 61 (74)
T cd01813 15 TTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL 61 (74)
T ss_pred EECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence 488999999999999999999988666776 456677778888876
No 22
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=78.11 E-value=7.6 Score=25.13 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=43.6
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
+.+|.|-|.-. .-+...|.|..+.+++.++..+..+.++++++--|+|- +.-...+.|+.++
T Consensus 9 ~~~i~I~v~~~------~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~-G~~L~~~~T~~~l 70 (87)
T cd01763 9 SEHINLKVKGQ------DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD-GQRIRDNQTPDDL 70 (87)
T ss_pred CCeEEEEEECC------CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC-CeECCCCCCHHHc
Confidence 35566666322 22345789999999999999999999999876666664 4434445677665
No 23
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=76.84 E-value=11 Score=22.17 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=39.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Y 110 (117)
.+-++.+.|++++...|.++.+++++.- =|..|+.....+.++++ +.-. +..+|+..
T Consensus 11 ~~~~~~~~ti~~lK~~i~~~~~~~~~~~-~l~~~g~~l~d~~~l~~----~~v~~~~~i~v~~ 68 (69)
T cd01769 11 ELEVSPDDTVAELKAKIAAKEGVPPEQQ-RLIYAGKILKDDKTLSD----YGIQDGSTLHLVL 68 (69)
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHE-EEEECCcCCCCcCCHHH----CCCCCCCEEEEEE
Confidence 4678889999999999999999877643 34557765566667755 3222 44566653
No 24
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=76.01 E-value=9.5 Score=23.22 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=41.4
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCC-eEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG-fLyv~Ys 111 (117)
.+-|+.+.|++++...|..+.++++++--.+ .++.....+.++++. .-.|| .|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~~----~i~~g~~i~l~~~ 72 (76)
T cd01806 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAADY----KLEGGSVLHLVLA 72 (76)
T ss_pred EEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHHc----CCCCCCEEEEEEE
Confidence 3568999999999999999999988754444 566655666777663 33344 6777654
No 25
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=74.10 E-value=7.1 Score=23.87 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=35.6
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
+-|.++.|++++...|-.+.++++++ .-|+.++.....+.++++
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~-q~Li~~G~~L~d~~~l~~ 56 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQ-LRVIFAGKELRNTTTIQE 56 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHH-eEEEECCeECCCCCcHHH
Confidence 45889999999999999999997654 566677766677788887
No 26
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=73.83 E-value=18 Score=22.29 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=47.6
Q ss_pred cceEEec-CCCchHHHHHHHHHhhCCCCCceEEEEEcC--C-C-CCccchHHHHHhHcCC-CCCeEEEE
Q 033514 47 KKKYLVP-ADLTVGQFVYVIRKRIKLSAEKAIFIFVDN--V-L-PPTGAIMSTIYDEKKD-EDGFLYVT 109 (117)
Q Consensus 47 k~Kflvp-~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~--~-~-p~~~~~l~~lY~~~kd-~DGfLyv~ 109 (117)
...|.++ .+.++.+|...|++++++....-.+-|.++ - + .+.|+.+...++.+.. .++.|.+.
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~ 79 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSKKLRLF 79 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEE
Confidence 4567788 999999999999999998765555556753 2 2 4777889999888864 46666654
No 27
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=73.42 E-value=22 Score=23.09 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=42.4
Q ss_pred eEEe--cCCCchHHHHHHHHHhhC-CCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 49 KYLV--PADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 49 Kflv--p~~~tv~~~~~~lrk~L~-l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
-|-| +.+.||+++...|....+ ..+.+..=|.-.+.+...+.+|+++.+.-+ .+--+++.|+
T Consensus 15 ~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~-~~~tiHLV~~ 79 (79)
T cd01790 15 DQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQD-EYHMVHLVCA 79 (79)
T ss_pred EEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhccc-CCceEEEEeC
Confidence 3666 789999999999998874 332334445455666688899999987753 2335566553
No 28
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=71.98 E-value=8 Score=23.94 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=34.3
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
+=|+.+.||+++...|..+.++++++ .-|+.++.....+.++++
T Consensus 15 l~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~~G~~L~d~~~L~~ 58 (74)
T cd01807 15 LQVSEKESVSTLKKLVSEHLNVPEEQ-QRLLFKGKALADDKRLSD 58 (74)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHH-eEEEECCEECCCCCCHHH
Confidence 45889999999999999999998754 556677766666677754
No 29
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=70.12 E-value=10 Score=23.32 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=39.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCC--CCCceEEEEEcCCCCCccchHHHHHhHcCCCCC-eEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKL--SAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l--~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG-fLyv~Y 110 (117)
.+=|+.+.||+++...|..+.++ ++++ .-|..++.....+.++++ |+-.|| .|++.-
T Consensus 14 ~l~v~~~~TV~~lK~~i~~~~~i~~~~~~-q~L~~~G~~L~d~~~L~~----~~i~~~~~i~~~~ 73 (77)
T cd01805 14 PIEVDPDDTVAELKEKIEEEKGCDYPPEQ-QKLIYSGKILKDDTTLEE----YKIDEKDFVVVMV 73 (77)
T ss_pred EEEECCCCcHHHHHHHHHHhhCCCCChhH-eEEEECCEEccCCCCHHH----cCCCCCCEEEEEE
Confidence 35588999999999999999988 6554 445567765566677766 333343 566543
No 30
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=67.93 E-value=26 Score=21.59 Aligned_cols=42 Identities=7% Similarity=0.146 Sum_probs=35.1
Q ss_pred CCccceEEecCCCchHHHHHHHHHhh-CCCCCceEEEEEcCCC
Q 033514 44 TIDKKKYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNVL 85 (117)
Q Consensus 44 ~l~k~Kflvp~~~tv~~~~~~lrk~L-~l~~~~slfl~Vn~~~ 85 (117)
.+...-+.||.+.|..++...+.+-| ........=++||+..
T Consensus 14 ~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~ 56 (65)
T PF08154_consen 14 EVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEE 56 (65)
T ss_pred cCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEE
Confidence 45667899999999999999999999 6666777778888854
No 31
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=67.20 E-value=27 Score=21.62 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=46.9
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC---CC-CCccchHHHHHhHcCCC-CCeEEE
Q 033514 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN---VL-PPTGAIMSTIYDEKKDE-DGFLYV 108 (117)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~---~~-p~~~~~l~~lY~~~kd~-DGfLyv 108 (117)
+...+.+|.+.++.+|...|.+++++..+.-..-|.++ .+ .+.++.|....+.++.. .+.|-|
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~~~l~l 78 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGSKKLRL 78 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCCceEEE
Confidence 35568899999999999999999998765555667764 23 57788888888887643 344443
No 32
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=66.69 E-value=18 Score=21.69 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=33.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
.+-++.+.|++++...|.++.+++++.- =|..++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L~d~~~L~~ 58 (72)
T cd01809 14 TFTVEEEITVLDLKEKIAEEVGIPVEQQ-RLIYSGRVLKDDETLSE 58 (72)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHe-EEEECCEECCCcCcHHH
Confidence 4678899999999999999999876643 33447766666667765
No 33
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=66.01 E-value=17 Score=22.08 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=40.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|.++.++++++ .=|+.++.....+.++++ | .-. +.-+++...
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~g~~~~~-q~L~~~g~~L~d~~~L~~-~---~i~~~~~i~l~~~ 72 (76)
T cd01803 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSD-Y---NIQKESTLHLVLR 72 (76)
T ss_pred EEEECCcCcHHHHHHHHHHHhCCCHHH-eEEEECCEECCCCCcHHH-c---CCCCCCEEEEEEE
Confidence 467899999999999999999987654 344457765566667766 3 333 336666553
No 34
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=65.92 E-value=15 Score=24.52 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=31.5
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCC--CCceEEEEEcCC
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLS--AEKAIFIFVDNV 84 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~--~~~slfl~Vn~~ 84 (117)
+-..|+.+.|..++-...-.++.+. ..-+||+||++.
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~ 54 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEET 54 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCc
Confidence 3457999999999999999999875 467899999983
No 35
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=65.10 E-value=7.3 Score=23.75 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.5
Q ss_pred cccccHHHHHHHHHHHHhh
Q 033514 7 KIEHEFEKRRAEAERIREK 25 (117)
Q Consensus 7 k~~~~~e~R~~e~~~i~~k 25 (117)
....|+|+|.++++..|++
T Consensus 35 ~~~kSlEERE~eY~~AR~R 53 (59)
T PF12752_consen 35 RPSKSLEEREAEYAEARAR 53 (59)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 4578999999999999875
No 36
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=63.83 E-value=16 Score=21.93 Aligned_cols=44 Identities=5% Similarity=0.073 Sum_probs=31.5
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
+-|+.+.|++++...|...-+++++. .=|+.++.....+.++++
T Consensus 14 i~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~~~g~~l~d~~~L~~ 57 (71)
T cd01812 14 LSISSQATFGDLKKMLAPVTGVEPRD-QKLIFKGKERDDAETLDM 57 (71)
T ss_pred EEECCCCcHHHHHHHHHHhhCCChHH-eEEeeCCcccCccCcHHH
Confidence 45889999999999999999988754 344456544444555544
No 37
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=63.54 E-value=38 Score=22.24 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=46.7
Q ss_pred ccceEEecC--CCchHHHHHHHHHhhCCCCCceEEE-EEcC----CCCCccchHHHHHhHcCCCCCeEEEEe
Q 033514 46 DKKKYLVPA--DLTVGQFVYVIRKRIKLSAEKAIFI-FVDN----VLPPTGAIMSTIYDEKKDEDGFLYVTY 110 (117)
Q Consensus 46 ~k~Kflvp~--~~tv~~~~~~lrk~L~l~~~~slfl-~Vn~----~~p~~~~~l~~lY~~~kd~DGfLyv~Y 110 (117)
+...|.++. +.++.++..-|+++.+++ ++=+ |+++ .+.+.++.+.+.++.+....+.|-|+-
T Consensus 10 d~~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~~v 78 (81)
T cd06396 10 ESQSFLVSDSENTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQMNV 78 (81)
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEEEE
Confidence 356789988 779999999999999999 3333 6653 346778888888888766566666654
No 38
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=62.14 E-value=10 Score=29.33 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=31.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc---CCC--CCccchHHH
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NVL--PPTGAIMST 94 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn---~~~--p~~~~~l~~ 94 (117)
.+.|+.+.+++++...|+++++++++..|-+|-. +.+ ..++.++.+
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~ 138 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEK 138 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhh
Confidence 4679999999999999999999999999988874 222 255666666
No 39
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=62.14 E-value=19 Score=23.36 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=38.9
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEE-EEcC----CCCCccchHHHHHhHc
Q 033514 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN----VLPPTGAIMSTIYDEK 99 (117)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl-~Vn~----~~p~~~~~l~~lY~~~ 99 (117)
+...|.+|.+.++.++...|++++++.+...+-| |.++ ...+.|+-|.+..+-+
T Consensus 10 d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~ 68 (82)
T cd06407 10 EKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVY 68 (82)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHH
Confidence 3557889999999999999999999976445555 6653 2356777776644433
No 40
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=61.98 E-value=14 Score=22.83 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=35.7
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCcc-chHHHHHhHcCCCCCeEEE
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSTIYDEKKDEDGFLYV 108 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~-~~l~~lY~~~kd~DGfLyv 108 (117)
..-|+++.||+++...|..+-++++.+ .-|+.++.....+ .++++ |. -+ ++.+|++
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~gip~~~-q~Li~~Gk~L~D~~~~L~~-~g-i~-~~~~l~l 69 (71)
T cd01796 13 SLDVDPDLELENFKALCEAESGIPASQ-QQLIYNGRELVDNKRLLAL-YG-VK-DGDLVVL 69 (71)
T ss_pred EEEECCcCCHHHHHHHHHHHhCCCHHH-eEEEECCeEccCCcccHHH-cC-CC-CCCEEEE
Confidence 356889999999999999999998765 3444555443444 33433 22 21 2446665
No 41
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=61.33 E-value=28 Score=22.00 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=32.4
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
.+-|+++.||+++...|-.+.++++..- -||-+..+-..+.+|++
T Consensus 16 ~l~v~~~~TV~~lK~kI~~~~gip~~~Q-rL~~G~~L~dD~~tL~~ 60 (75)
T cd01799 16 WLTVRPDMTVAQLKDKVFLDYGFPPAVQ-RWVIGQRLARDQETLYS 60 (75)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEcCCeeCCCcCCHHH
Confidence 3668999999999999999999987532 33444454445567765
No 42
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=60.42 E-value=23 Score=22.33 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=32.4
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
-|+++.||+++...|..+-+++++.-=.+|. +.....+.+|++
T Consensus 17 ~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-Gk~L~D~~tL~~ 59 (73)
T cd01791 17 KCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW-YTIFKDHISLGD 59 (73)
T ss_pred EeCCCCcHHHHHHHHHHHhCCChHHEEEEeC-CcCCCCCCCHHH
Confidence 5789999999999998888888776555554 555555667766
No 43
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=59.78 E-value=37 Score=20.65 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=39.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Y 110 (117)
.+-|..+.||+++...|.++.++++. .+-|..++.....+.++++. .- ++..|+|.-
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~-~~~Li~~Gk~L~d~~tL~~~----~i~~~stl~l~~ 70 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQE-QLVLIFAGKILKDTDTLTQH----NIKDGLTVHLVI 70 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHH-HEEEEECCeEcCCCCcHHHc----CCCCCCEEEEEE
Confidence 46688999999999999988887654 44554466555566677553 33 355777753
No 44
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=59.65 E-value=40 Score=20.99 Aligned_cols=66 Identities=8% Similarity=0.026 Sum_probs=45.6
Q ss_pred CCccceEEecCCCchHHHHHHHHHhhCCCCC-ceEEE--EEcC----CCCCccchHHHHHhHcCCC--CCeEEEE
Q 033514 44 TIDKKKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFI--FVDN----VLPPTGAIMSTIYDEKKDE--DGFLYVT 109 (117)
Q Consensus 44 ~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~-~slfl--~Vn~----~~p~~~~~l~~lY~~~kd~--DGfLyv~ 109 (117)
...-+.+.|+.+.|..+++..+-+++++... +...| +... ....+++..-.+....... ++.+++.
T Consensus 15 ~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~~~~~f~lr 89 (93)
T PF00788_consen 15 GSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDSQNSRFVLR 89 (93)
T ss_dssp CCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGTTTEEEEEE
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCccccCceEEEEE
Confidence 3356778999999999999999999999433 33334 2322 1246777777777777553 6666664
No 45
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=59.34 E-value=24 Score=21.89 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=34.8
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
.+-|+.+.||+++...|..+-++++.+- =|+.++.....+.++++
T Consensus 12 ~l~v~~~~TV~~lK~~I~~~~gi~~~~q-~Li~~G~~L~D~~~l~~ 56 (70)
T cd01794 12 KLSVSSKDTVGQLKKQLQAAEGVDPCCQ-RWFFSGKLLTDKTRLQE 56 (70)
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHe-EEEECCeECCCCCCHHH
Confidence 4568889999999999999989887643 34456666677788877
No 46
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=57.56 E-value=15 Score=28.79 Aligned_cols=35 Identities=20% Similarity=0.513 Sum_probs=30.1
Q ss_pred ccccccccHHHHHHHHHHHHhhCCCcccEEEEccCC
Q 033514 4 SNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAER 39 (117)
Q Consensus 4 ~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~ 39 (117)
..+++..|+|+|..-++.+++++| ..||+|..-.+
T Consensus 158 ~~i~qh~sledR~~aA~~l~~~~~-~~pi~vD~mdN 192 (237)
T PF00837_consen 158 YEIPQHRSLEDRLRAAKLLKEEFP-QCPIVVDTMDN 192 (237)
T ss_pred eeecCCCCHHHHHHHHHHHHhhCC-CCCEEEEccCC
Confidence 467889999999999999999997 58999977643
No 47
>PTZ00044 ubiquitin; Provisional
Probab=56.45 E-value=31 Score=21.09 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=32.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
.+-|+.+.|++++...|..+.++++++--.+ .++.....+.++++
T Consensus 14 ~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~l~~ 58 (76)
T PTZ00044 14 SFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSGKQMSDDLKLSD 58 (76)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCEEccCCCcHHH
Confidence 4678999999999999999999987643333 46655555666643
No 48
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=56.40 E-value=24 Score=21.73 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=41.6
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
+-|..+.||+++...|..+.++++++ .-|+.++.....+.++++ |.-. + +-.|+|.-.
T Consensus 13 l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~G~~L~D~~tL~~-~~i~-~-~~tl~l~~~ 70 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQRERVQADQ-FWLSFEGRPMEDEHPLGE-YGLK-P-GCTVFMNLR 70 (74)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHH-eEEEECCEECCCCCCHHH-cCCC-C-CCEEEEEEE
Confidence 56888999999999999998887654 455567766667788877 4322 2 447777643
No 49
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=54.22 E-value=40 Score=20.72 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=41.7
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEE
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVT 109 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~ 109 (117)
...+-|.++.||+++...|..+-++++++ .-|+.++.....+.++++ |.-- ++--|++.
T Consensus 10 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~Li~~Gk~L~D~~tL~~-~~i~--~~~tl~l~ 68 (74)
T cd01793 10 THTLEVTGQETVSDIKAHVAGLEGIDVED-QVLLLAGVPLEDDATLGQ-CGVE--ELCTLEVA 68 (74)
T ss_pred EEEEEECCcCcHHHHHHHHHhhhCCCHHH-EEEEECCeECCCCCCHHH-cCCC--CCCEEEEE
Confidence 44567899999999999999998987665 455567766677788877 4322 13355554
No 50
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=52.66 E-value=25 Score=22.10 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=38.3
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCce-EEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEecC
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAEKA-IFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYSG 112 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~~s-lfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys~ 112 (117)
-|+.+.||+++...|.++.+++++.- |.+..++.....+.+|++ |.- ++..|++.-+.
T Consensus 18 ~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~----~gi~~gs~l~l~~~~ 77 (80)
T cd01792 18 SLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVS----QGLGPGSTVLLVVQN 77 (80)
T ss_pred EcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHH----cCCCCCCEEEEEEEc
Confidence 46889999999999999988876533 321225555555667765 233 35588877553
No 51
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=52.64 E-value=30 Score=23.97 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.8
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCc
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~ 75 (117)
-.|+++.||+++...|...+++.|.+
T Consensus 19 L~V~~~~TVg~LK~lImQ~f~V~P~d 44 (107)
T cd01795 19 LLVSANQTLKELKIQIMHAFSVAPFD 44 (107)
T ss_pred EEeCccccHHHHHHHHHHHhcCCccc
Confidence 45889999999999999999887753
No 52
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=49.68 E-value=34 Score=21.26 Aligned_cols=58 Identities=7% Similarity=0.083 Sum_probs=39.2
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
+-|+.+.||++|...|....+++++. .=|..++.....+.++++. .-. ++..|+|.-.
T Consensus 12 l~v~~~~TV~~lK~~i~~~~gip~~~-q~L~~~G~~L~d~~tL~~~-~i~--~g~~l~v~~~ 69 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEETGMPAGK-QKLQYEGIFIKDSNSLAYY-NLA--NGTIIHLQLK 69 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEEcCCCCcHHHc-CCC--CCCEEEEEEe
Confidence 45889999999999999999987654 3445566655666777542 211 2446666543
No 53
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=49.65 E-value=14 Score=27.90 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=29.5
Q ss_pred CccceEEecCCCchHHHHHHHHHhhCCCCC--ceEEEE-E-cCCC---CCccchHHHH
Q 033514 45 IDKKKYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIF-V-DNVL---PPTGAIMSTI 95 (117)
Q Consensus 45 l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~--~slfl~-V-n~~~---p~~~~~l~~l 95 (117)
-+.-.++||++-||+++...++++++++++ ..|-++ | |+.+ .+.+..+++|
T Consensus 33 ~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 33 EQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp E-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 345678999999999999999999998654 233332 3 3433 5788888887
No 54
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=47.38 E-value=69 Score=20.04 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=39.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
-.-|+.+.||+++...|.++.+++++.- -|..++.....+ ++++. .- .++..|||.-+-
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~~~~~~~q-rL~~~Gk~L~d~-~L~~~--gi-~~~~~i~l~~~~ 73 (78)
T cd01804 15 DLSVPPDETVEGLKKRISQRLKVPKERL-ALLHRETRLSSG-KLQDL--GL-GDGSKLTLVPTV 73 (78)
T ss_pred EEEECCcCHHHHHHHHHHHHhCCChHHE-EEEECCcCCCCC-cHHHc--CC-CCCCEEEEEeec
Confidence 3568999999999999998888877643 444445443334 55542 12 236688887654
No 55
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=45.84 E-value=19 Score=25.12 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=33.2
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCC----ceEEEEEcCCCC----CccchHHHHHhHc
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAE----KAIFIFVDNVLP----PTGAIMSTIYDEK 99 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~----~slfl~Vn~~~p----~~~~~l~~lY~~~ 99 (117)
+-+|-|+.++|+++|+..++++.+++.. ..-.||..-..+ -.+++|.+|++.-
T Consensus 34 WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~~rl~~~i~elv~~v 94 (125)
T PF09358_consen 34 WDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHKERLKMPISELVEEV 94 (125)
T ss_dssp T-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHHHHTTSBHHHHHHHH
T ss_pred eeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhHHHhCCcHHHHHHHh
Confidence 5588999999999999999999988742 112233222001 2566899999964
No 56
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=45.62 E-value=54 Score=21.15 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=28.7
Q ss_pred ecCCCchHHHHHHHHHhhC--CC-CCceEEEEEcCCCCCccchHHH
Q 033514 52 VPADLTVGQFVYVIRKRIK--LS-AEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 52 vp~~~tv~~~~~~lrk~L~--l~-~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
-|.+.||+++...|..+.+ .. +++ .=|.-++.....+.+|++
T Consensus 17 ~~~~~TV~~LK~kI~~~~~egi~~~dq-QrLIy~GKiL~D~~TL~d 61 (75)
T cd01815 17 SPGGYQVSTLKQLIAAQLPDSLPDPEL-IDLIHCGRKLKDDQTLDF 61 (75)
T ss_pred CCccCcHHHHHHHHHHhhccCCCChHH-eEEEeCCcCCCCCCcHHH
Confidence 4899999999999999964 54 443 333344555566677765
No 57
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=43.18 E-value=27 Score=21.91 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=27.6
Q ss_pred eEEecCC-CchHHHHHHHHHhhC-C-CCCceEEEEEcCCCCC
Q 033514 49 KYLVPAD-LTVGQFVYVIRKRIK-L-SAEKAIFIFVDNVLPP 87 (117)
Q Consensus 49 Kflvp~~-~tv~~~~~~lrk~L~-l-~~~~slfl~Vn~~~p~ 87 (117)
.+-++.+ .|+.++...|..+.. + .....+.+.||+..-.
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~ 60 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT 60 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC
Confidence 3456766 899999999988864 2 2235678999986533
No 58
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=41.51 E-value=45 Score=21.88 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=46.2
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCC
Q 033514 43 PTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKD 101 (117)
Q Consensus 43 p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd 101 (117)
|.+.-+..-||++..+.-++.+--...++++..| -+.-|+-+ -.+.++-|++|=+|..
T Consensus 13 p~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~Ts-AiiTndGvGINP~qtAGnvflkhgs 71 (82)
T cd01766 13 PKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 71 (82)
T ss_pred CCCcceEEeccccCchHHHHHHHHHhcCCCccce-eEEecCccccChhhcccceeeecCC
Confidence 4455667789999999999999999999998888 44455544 7888889999998854
No 59
>PRK13669 hypothetical protein; Provisional
Probab=41.45 E-value=21 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=22.2
Q ss_pred ceEEEEEcCCC---CCccchHHHHHhHcCC
Q 033514 75 KAIFIFVDNVL---PPTGAIMSTIYDEKKD 101 (117)
Q Consensus 75 ~slfl~Vn~~~---p~~~~~l~~lY~~~kd 101 (117)
...|.+||+.. +.+++.+..||+.=++
T Consensus 45 ~~~FAlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 45 EGLFALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred cCceEEECCeEeecCCHHHHHHHHHHHHhh
Confidence 57899999943 7899999999987643
No 60
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=41.05 E-value=22 Score=22.91 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=30.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC----CCC-CccchHHHHHhHcCCCCCeEEEE
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN----VLP-PTGAIMSTIYDEKKDEDGFLYVT 109 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~----~~p-~~~~~l~~lY~~~kd~DGfLyv~ 109 (117)
..-++.+.|++++..-|...++++.. +.-||.|. .+. +.+.+|+++==+|+| .||+.
T Consensus 17 Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd---mlyL~ 78 (80)
T PF11543_consen 17 RIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDRNNKEELKSSDSKTLSSLGLKHGD---MLYLK 78 (80)
T ss_dssp EEEE-TTSBHHHHHHHHHHHS---TT-T---BSSGGGGGCSSS-TT-CCCCT---TT----EEE--
T ss_pred EEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecCCCCcccccCCcCCHHHcCCCCcc---EEEEe
Confidence 45688999999999999999998865 55666653 122 455666666555543 66653
No 61
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=40.84 E-value=86 Score=19.26 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=43.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC---CC-CCccchHHHHHhHcCC
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN---VL-PPTGAIMSTIYDEKKD 101 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~---~~-p~~~~~l~~lY~~~kd 101 (117)
+-++.+.++.+|...|++++++.+..-..-|.+. .+ .+.|+.+.+..+.++.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 6789999999999999999999877777778863 23 5888888888888765
No 62
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=39.70 E-value=75 Score=19.39 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=29.9
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V 81 (117)
...|-|.++.|+.++...|-++|+|...+-.=|.+
T Consensus 8 ~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 8 TKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred cEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 45688999999999999999999999777666666
No 63
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=39.67 E-value=83 Score=19.67 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=37.5
Q ss_pred CccceEEecCCCchHHHHHHHHHhhCCC---CCceEEEEEcC--C--CCCccchHHHHHhHcC
Q 033514 45 IDKKKYLVPADLTVGQFVYVIRKRIKLS---AEKAIFIFVDN--V--LPPTGAIMSTIYDEKK 100 (117)
Q Consensus 45 l~k~Kflvp~~~tv~~~~~~lrk~L~l~---~~~slfl~Vn~--~--~p~~~~~l~~lY~~~k 100 (117)
-.-+-..|+++.|.++++..+-+++++. .+=+||-.+++ . ...+++..-++.....
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~ 74 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNAP 74 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhcC
Confidence 3445678999999999999999999998 23344544555 2 2455555555544443
No 64
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=38.66 E-value=48 Score=24.91 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=36.0
Q ss_pred CCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCC-eEEEEecCcccCC
Q 033514 55 DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTYSGENTFG 117 (117)
Q Consensus 55 ~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG-fLyv~Ys~~~~fG 117 (117)
.++++.++.-|++.++++..+ .-..++++|... ..|| |+++ +.+.||
T Consensus 30 ~~~F~dii~EI~~~~~~s~~e------------i~~~i~~FYTdl-n~DgrFi~L---Gdn~Wg 77 (175)
T COG3343 30 PFNFSDIINEIQKLLGVSKEE------------IRSRIGQFYTDL-NIDGRFISL---GDNKWG 77 (175)
T ss_pred CccHHHHHHHHHHHhCcCHHH------------HHHHHHHHHHHh-ccCCceeec---cccccc
Confidence 689999999999999887554 236789999998 5565 7665 466665
No 65
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=38.33 E-value=49 Score=22.53 Aligned_cols=27 Identities=15% Similarity=0.493 Sum_probs=22.5
Q ss_pred chHHHHHHHHHhhCCCC-CceEEEEEcC
Q 033514 57 TVGQFVYVIRKRIKLSA-EKAIFIFVDN 83 (117)
Q Consensus 57 tv~~~~~~lrk~L~l~~-~~slfl~Vn~ 83 (117)
.+.-+..+++..++++| +.++|+|+|.
T Consensus 16 g~dgL~~lV~~~~~~dp~~g~~fvF~nr 43 (107)
T PF05717_consen 16 GIDGLAALVREELGLDPFSGDLFVFCNR 43 (107)
T ss_pred ChhHHHHHHHHhhcCCCCcceEEEEEec
Confidence 45778899999999874 5789999995
No 66
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=38.10 E-value=85 Score=22.30 Aligned_cols=56 Identities=29% Similarity=0.522 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCC------cccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCC----CceEEEE
Q 033514 16 RAEAERIREKYPD------RIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSA----EKAIFIF 80 (117)
Q Consensus 16 ~~e~~~i~~k~p~------~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~----~~slfl~ 80 (117)
+.|.+.+.+.-|. ++|+|+|..+. +....|.|....-+ .+|++=|+... ++.+++|
T Consensus 46 k~ELe~L~~~lp~~~~~~lrLPIile~~~~-----~~~g~~~V~g~~e~----k~i~~ilg~~~~~~~~~~l~i~ 111 (132)
T PF01886_consen 46 KEELERLAEILPEYEWSKLRLPIILEIDPT-----LGEGSYRVRGKEEV----KAISKILGKEREFEEEDELYIY 111 (132)
T ss_pred HHHHHHHHHhCCHHHHhceeccEEEEEecc-----CCCceEEEeCHHHH----HHHHHHhCCCcccccCCeEEEc
Confidence 4588888888884 59999998643 34456777777633 33444455443 5666665
No 67
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.03 E-value=74 Score=25.36 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=42.3
Q ss_pred CccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCC-----CCCccchHHHHHhHcC
Q 033514 45 IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-----LPPTGAIMSTIYDEKK 100 (117)
Q Consensus 45 l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~-----~p~~~~~l~~lY~~~k 100 (117)
|+-.|.=|.++..|..|...+|+. +.-.|-+++||. .|..|.+++++=++++
T Consensus 54 l~~~kLDV~~~~~V~~v~~evr~~----~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~ 110 (289)
T KOG1209|consen 54 LKPYKLDVSKPEEVVTVSGEVRAN----PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFK 110 (289)
T ss_pred CeeEEeccCChHHHHHHHHHHhhC----CCCceEEEEcCCCCCcccccccCCHHHHHhhhc
Confidence 455566789999999999999985 455788888872 4999999999999995
No 68
>PRK06437 hypothetical protein; Provisional
Probab=36.51 E-value=50 Score=20.37 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=26.1
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchH
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIM 92 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l 92 (117)
+-+++..|+++++. .|++++ +.+.+.+|+.+.+.+..|
T Consensus 15 ~~i~~~~tv~dLL~----~Lgi~~-~~vaV~vNg~iv~~~~~L 52 (67)
T PRK06437 15 IEIDHELTVNDIIK----DLGLDE-EEYVVIVNGSPVLEDHNV 52 (67)
T ss_pred EEcCCCCcHHHHHH----HcCCCC-ccEEEEECCEECCCceEc
Confidence 45688889998774 457865 567888999764444433
No 69
>PRK04115 hypothetical protein; Provisional
Probab=36.33 E-value=1.5e+02 Score=21.40 Aligned_cols=55 Identities=25% Similarity=0.401 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCC-----cccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCC----CCCceEEEE
Q 033514 17 AEAERIREKYPD-----RIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKL----SAEKAIFIF 80 (117)
Q Consensus 17 ~e~~~i~~k~p~-----~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l----~~~~slfl~ 80 (117)
.|.+.+.+--|. |+|+|+|..+.. ..-.|.|....-+ .+|++=|+. ..++.+++|
T Consensus 50 ~ELe~L~~~l~~~~~~lrLPIile~~~~~-----~~g~~~VrG~~ev----k~IskiLg~~~~~~e~~~l~ly 113 (137)
T PRK04115 50 RELEFLKELLDEDACRLRLPIILEIDSSL-----GEGAIVVRGKEEV----KVISKILGKEDIFSEEDILYLY 113 (137)
T ss_pred HHHHHHHHhccchhhheeeeEEEEEecCC-----CceEEEEcCHHHH----HHHHHHhCccccccCCCEEEEe
Confidence 366666665553 699999998532 2345677776643 344454543 355666665
No 70
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=36.16 E-value=63 Score=21.42 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=33.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEE-EEcC-CC--CCccchHHHHHhHcC
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN-VL--PPTGAIMSTIYDEKK 100 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl-~Vn~-~~--p~~~~~l~~lY~~~k 100 (117)
-..||++.++.+|..-||.+++++ +.+-+ |.+. -. .+.+..|....+..+
T Consensus 15 ~i~v~~~i~f~dL~~kIrdkf~~~--~~~~iKykDEGD~iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 15 YIMIGPDTGFADFEDKIRDKFGFK--RRLKIKMKDDGDMITMGDQDDLDMAIDTAR 68 (86)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCC--CceEEEEEcCCCCccccCHHHHHHHHHHHH
Confidence 347999999999999999999996 45555 3332 22 355555555554444
No 71
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=35.65 E-value=36 Score=20.83 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=28.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCC---CCCceEEEEEcCCCCCcc
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKL---SAEKAIFIFVDNVLPPTG 89 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l---~~~~slfl~Vn~~~p~~~ 89 (117)
.+-+++..|+++++..|..+..- .....+-++||+..-+.+
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~ 62 (80)
T cd00754 19 ELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLD 62 (80)
T ss_pred EEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCC
Confidence 44567789999999999877531 123567789998654333
No 72
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=35.49 E-value=49 Score=21.06 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=26.4
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCC-ceEEEE
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIF 80 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~-~slfl~ 80 (117)
..-.+|.++||+++...|-+..+++++ ..|+++
T Consensus 16 ~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 16 VEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 345789999999999999999999865 566665
No 73
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=35.19 E-value=84 Score=24.26 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=34.9
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~ 83 (117)
+||-|.+......+-| ....-++..+|..++...|-++|+++|..=-|.-+|+
T Consensus 175 nrv~V~f~~~~~~~~~---~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 175 NRVEVEFKPKDNPNDP---EFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp HEEEEEEEETTSTT------EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred CeEEEEEEECCCCCCC---CEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 5677777665444333 5566799999999999999999999998777777764
No 74
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.17 E-value=50 Score=26.23 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCccceE-EecCC---CchHHHHHHHHHhhCCCCCce
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAERSD--I-------PTIDKKKY-LVPAD---LTVGQFVYVIRKRIKLSAEKA 76 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~-------p~l~k~Kf-lvp~~---~tv~~~~~~lrk~L~l~~~~s 76 (117)
-|.|||.+-.+...+.-.+++|||+--...+- + -.+.=.-. ++|+- .+-.++..+.+.=..-.+.-.
T Consensus 58 Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lP 137 (309)
T cd00952 58 LTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMA 137 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 46799999999999999999999997764321 0 00000011 11111 122444444443332222357
Q ss_pred EEEEEcC-C--CCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 77 IFIFVDN-V--LPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 77 lfl~Vn~-~--~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
+++|=+- . .+-+-+++.+|- ++ +++.-|.+|+
T Consensus 138 v~iYn~P~~tg~~l~~~~l~~L~-~~---pnivgiKdss 172 (309)
T cd00952 138 IAIYANPEAFKFDFPRAAWAELA-QI---PQVVAAKYLG 172 (309)
T ss_pred EEEEcCchhcCCCCCHHHHHHHh-cC---CCEEEEEecC
Confidence 8888542 1 233345677774 23 5677777765
No 75
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=35.10 E-value=92 Score=21.22 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=29.0
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCC--ceEEEEEcC
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVDN 83 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~--~slfl~Vn~ 83 (117)
-+.+|-+.||+|++..|.++..+.++ -.|++.+++
T Consensus 16 Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~ 52 (97)
T cd01775 16 TLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHD 52 (97)
T ss_pred EEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECC
Confidence 46788999999999999999988764 456777777
No 76
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=34.75 E-value=42 Score=20.72 Aligned_cols=37 Identities=5% Similarity=0.090 Sum_probs=25.4
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccc
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 90 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~ 90 (117)
.+-+++..|++++.. .|++++ +.+.+.+|+.+.+.+.
T Consensus 17 ~~~~~~~~tv~~ll~----~l~~~~-~~v~v~vNg~iv~~~~ 53 (70)
T PRK08364 17 EIEWRKGMKVADILR----AVGFNT-ESAIAKVNGKVALEDD 53 (70)
T ss_pred EEEcCCCCcHHHHHH----HcCCCC-ccEEEEECCEECCCCc
Confidence 344678889988774 446765 5688899997644443
No 77
>TIGR01051 topA_bact DNA topoisomerase I, bacterial. This model describes DNA topoisomerase I among the members of bacteria. DNA topoisomerase I transiently cleaves one DNA strand and thus relaxes negatively supercoiled DNA during replication, transcription and recombination events.
Probab=34.68 E-value=1.3e+02 Score=26.48 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=37.2
Q ss_pred cCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeE-EEEecCcc
Q 033514 53 PADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFL-YVTYSGEN 114 (117)
Q Consensus 53 p~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfL-yv~Ys~~~ 114 (117)
|.-.+.++++....++++++++++ -.....||+.++-.||-+ +|+|-.+.
T Consensus 250 P~pf~l~~Lq~~a~~~~g~S~~~t------------l~iaQ~LYe~~~~~~~~~g~iSYPRTd 300 (610)
T TIGR01051 250 PPPFTTSTLQQEASRKLGFSAKKT------------MMIAQRLYEGVSTGDGTIGLITYMRTD 300 (610)
T ss_pred CCCcCHHHHHHHHHHhcCCCHHHH------------HHHHHHHHhcccccCCceeEEeecCcC
Confidence 556788899999999999998775 356789999754445445 78887654
No 78
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=34.52 E-value=83 Score=21.09 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=46.1
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeE
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFL 106 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfL 106 (117)
++.+-|.|.-.. ++ ...+-|..+.||+++...|..+-++++.+- =|+.++.....+.++++ |. - .++.-|
T Consensus 25 ~~~M~I~Vk~l~-G~-----~~~leV~~~~TV~~lK~kI~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d-y~-I-~~~stL 94 (103)
T cd01802 25 YDTMELFIETLT-GT-----CFELRVSPFETVISVKAKIQRLEGIPVAQQ-HLIWNNMELEDEYCLND-YN-I-SEGCTL 94 (103)
T ss_pred CCCEEEEEEcCC-CC-----EEEEEeCCCCcHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHH-cC-C-CCCCEE
Confidence 455556664332 11 223468999999999999999999887643 33456655566677755 22 1 124467
Q ss_pred EEEec
Q 033514 107 YVTYS 111 (117)
Q Consensus 107 yv~Ys 111 (117)
+|.-.
T Consensus 95 ~l~~~ 99 (103)
T cd01802 95 KLVLA 99 (103)
T ss_pred EEEEe
Confidence 76543
No 79
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=34.10 E-value=20 Score=22.99 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=13.8
Q ss_pred cCCCCCeEEEEecCcc
Q 033514 99 KKDEDGFLYVTYSGEN 114 (117)
Q Consensus 99 ~kd~DGfLyv~Ys~~~ 114 (117)
+-|+||-+|+.|+.++
T Consensus 42 wiDe~G~vYi~~s~ee 57 (76)
T PF06970_consen 42 WIDENGNVYIIFSIEE 57 (76)
T ss_pred cCCCCCCEEEEeeHHH
Confidence 5689999999999875
No 80
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=32.70 E-value=55 Score=23.19 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=34.9
Q ss_pred cCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 53 PADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 53 p~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
...+++.+++.-+.+.++++.++ ....++++|-.- ..||- ..+.+++.||
T Consensus 17 ~~~m~f~dL~~ev~~~~~~s~e~------------~~~~iaq~YtdL-n~DGR--Fi~lG~n~Wg 66 (129)
T PRK02363 17 KEPMSFYDLVNEIQKYLGKSDEE------------IRERIAQFYTDL-NLDGR--FISLGDNKWG 66 (129)
T ss_pred CCcccHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHH-hccCC--eeEcCCCcee
Confidence 45678888888888888765433 136788999888 56773 2345677776
No 81
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=32.60 E-value=84 Score=26.45 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCC
Q 033514 12 FEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLP 86 (117)
Q Consensus 12 ~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p 86 (117)
|+-.....+.++++|...||+++ +.+..|-.+...++++.-+++.+ +++|..+.+|
T Consensus 88 ldl~~~qi~~l~~~~~~~iPl~i-----------------MtS~~T~~~T~~~l~kyfg~~~~--v~~F~Q~~~P 143 (420)
T PF01704_consen 88 LDLIVEQIEALNKKYGVDIPLYI-----------------MTSFNTHEDTRKFLEKYFGLDVD--VFFFKQSKLP 143 (420)
T ss_dssp HHHHHHHHHHHHHHHTTT-EEEE-----------------EEETTTHHHHHHHHHHGCGSSCC--EEEEEE-EEE
T ss_pred HHHHHHHHHHHhccccccceEEE-----------------ecCcccHHHHHHHHHHhcCCCcc--eEEEeecCcc
Confidence 45556667778888877777655 45667888899999996677655 7776655544
No 82
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=32.36 E-value=54 Score=21.47 Aligned_cols=45 Identities=13% Similarity=0.303 Sum_probs=29.7
Q ss_pred EecCCCchHHHHHHHHHh--hCCC------CCceEEEEE-----cCCCCCccchHHHH
Q 033514 51 LVPADLTVGQFVYVIRKR--IKLS------AEKAIFIFV-----DNVLPPTGAIMSTI 95 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~--L~l~------~~~slfl~V-----n~~~p~~~~~l~~l 95 (117)
-|+++.|+++|+..|..+ +++. .+.+||+=. ..+-|..+.+|.+|
T Consensus 2 ~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL 59 (84)
T PF08825_consen 2 EVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL 59 (84)
T ss_dssp EESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT
T ss_pred CcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH
Confidence 378999999999999988 6654 245555511 11226677788888
No 83
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=31.65 E-value=61 Score=25.50 Aligned_cols=102 Identities=10% Similarity=0.073 Sum_probs=54.8
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCc-cceEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD--I-------PTID-KKKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~-------p~l~-k~Kflvp~~~---tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.+||.+-.+...+...+++|||+--...+- + -.+. .--.++|+-. +-.++..+.+.=..-.+.-
T Consensus 49 ~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~l 128 (294)
T TIGR02313 49 SLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDF 128 (294)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCC
Confidence 347799999999999989999999986654221 0 0000 0011222211 1134444443332222345
Q ss_pred eEEEEEcCC---CCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 76 AIFIFVDNV---LPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 76 slfl~Vn~~---~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
.+++|=+-. ..-+.+.+.+|-+++ .++..|..|+.
T Consensus 129 pv~iYn~P~~tg~~l~~~~l~~L~~~~---pnv~giK~ss~ 166 (294)
T TIGR02313 129 PIIIYNIPGRAAQEIAPKTMARLRKDC---PNIVGAKESNK 166 (294)
T ss_pred CEEEEeCchhcCcCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 688883322 122244667776655 45777777653
No 84
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=31.38 E-value=63 Score=24.77 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=54.3
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCCC---------CCCcc-ceEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSDI---------PTIDK-KKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~---------p~l~k-~Kflvp~~~---tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.+||+.-.+..++.-.+++|||+--...+.. -.+.- --.++|+.. +-.++..+.+.=..- ..-
T Consensus 46 ~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~-~~~ 124 (281)
T cd00408 46 TLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA-SDL 124 (281)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-CCC
Confidence 3467999999999999888999999977653210 00000 011222211 224444444433322 245
Q ss_pred eEEEEEcCC---CCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 76 AIFIFVDNV---LPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 76 slfl~Vn~~---~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
.+++|=+-. .+-+.+.+.+|-+ .+.+..+.+++
T Consensus 125 pi~iYn~P~~tg~~l~~~~~~~L~~----~~~v~giK~s~ 160 (281)
T cd00408 125 PVILYNIPGRTGVDLSPETIARLAE----HPNIVGIKDSS 160 (281)
T ss_pred CEEEEECccccCCCCCHHHHHHHhc----CCCEEEEEeCC
Confidence 688884422 2222346666653 35677777776
No 85
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=31.25 E-value=62 Score=25.29 Aligned_cols=99 Identities=10% Similarity=0.086 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCC----------Cccc-eEEecCCC---chHHHHHHHHHhhCCCCC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPT----------IDKK-KYLVPADL---TVGQFVYVIRKRIKLSAE 74 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~----------l~k~-Kflvp~~~---tv~~~~~~lrk~L~l~~~ 74 (117)
.-|.|||..-.+...+.-.+++|||+--.. +..+ +.-. -.++|+-. +-.++..+.+.=..-. +
T Consensus 49 ~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~--~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~-~ 125 (289)
T cd00951 49 SLTPDEYAQVVRAAVEETAGRVPVLAGAGY--GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST-D 125 (289)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC-C
Confidence 357799999999999888899999996643 2110 0000 11222221 2244444444333222 3
Q ss_pred ceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 75 KAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 75 ~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
-.+++|=+....-+.+.+.+|-+++ +.+..|.+|+.
T Consensus 126 ~pi~lYn~~g~~l~~~~l~~L~~~~---pnivgiKds~~ 161 (289)
T cd00951 126 LGVIVYNRANAVLTADSLARLAERC---PNLVGFKDGVG 161 (289)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC---CCEEEEEeCCC
Confidence 5688884322222244677776434 45777777653
No 86
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=30.98 E-value=1e+02 Score=23.36 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCCCCCceEEEEEcCCC---CCccchHHHHHhHcCCCCCeEEEEec
Q 033514 59 GQFVYVIRKRIKLSAEKAIFIFVDNVL---PPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 59 ~~~~~~lrk~L~l~~~~slfl~Vn~~~---p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
+.|...+++.|.-.+.+.+.+||.+.- ...-...++|....+- +| ..|.|+
T Consensus 2 ~~~~~~~~~~l~~~~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~-~~-~~i~Fs 55 (233)
T PF05990_consen 2 AAFQAQLNQRLAKSPDKEVLVFVHGYNNSFEDALRRAAQLAHDLGF-PG-VVILFS 55 (233)
T ss_pred hHHHHHHHHHHhhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-Cc-eEEEEE
Confidence 356778888988888899999997633 2333467777777743 44 444443
No 87
>COG2002 AbrB Regulators of stationary/sporulation gene expression [Transcription]
Probab=30.77 E-value=60 Score=21.09 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.7
Q ss_pred HHHHHhhCCCCCceEEEEEcC
Q 033514 63 YVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 63 ~~lrk~L~l~~~~slfl~Vn~ 83 (117)
.-+|++|++.+++.|-++++.
T Consensus 20 keiR~~lgi~~Gd~lei~~~~ 40 (89)
T COG2002 20 KEIREALGIKEGDVLEIIVDG 40 (89)
T ss_pred HHHHHHhCCCCCCEEEEEEeC
Confidence 457999999999999999985
No 88
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=30.71 E-value=1.6e+02 Score=19.26 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=42.6
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEEEc---C-CC-CCc-cchHHHHHhHcCCCCCeEEE
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---N-VL-PPT-GAIMSTIYDEKKDEDGFLYV 108 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn---~-~~-p~~-~~~l~~lY~~~kd~DGfLyv 108 (117)
.+|....++++...|+++|.+.++..-.=|-. + .+ |-. ++.|.+.+.+=++.=.-|.+
T Consensus 12 ~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v~~~~ltLwc 75 (78)
T cd06411 12 RAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDVADGPRGLQL 75 (78)
T ss_pred EccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhccCCceEEEE
Confidence 47889999999999999999998765444543 2 23 644 88999999988754333433
No 89
>PF04441 Pox_VERT_large: Poxvirus early transcription factor (VETF), large subunit ; InterPro: IPR007532 The poxvirus early transcription factor (VETF), in addition to the viral RNA polymerase, is required for efficient transcription of early genes in vitro. VETF is a heterodimeric protein that binds specifically to early gene promoters. The heterodimer is comprised of an 82 kDa (this family) subunit and a 70 kDa subunit.; GO: 0045893 positive regulation of transcription, DNA-dependent
Probab=30.65 E-value=58 Score=29.08 Aligned_cols=54 Identities=26% Similarity=0.462 Sum_probs=35.7
Q ss_pred CCchHHHHHHHHHhhCCCCCceEE--------EEEcCCC--CCc-cchHHHHHhHcCCCCCeEEEEecCc
Q 033514 55 DLTVGQFVYVIRKRIKLSAEKAIF--------IFVDNVL--PPT-GAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 55 ~~tv~~~~~~lrk~L~l~~~~slf--------l~Vn~~~--p~~-~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
++++.|+.-.|+.-|+++.+--+| =||+|+. |=. .+..--+ ..|||||..|.+-
T Consensus 59 Tlki~QlkGYl~nlL~i~edIIiyShkNNLeYsYvdNtIFnPf~~tQkktLI-----ksd~fLYNiY~~a 123 (700)
T PF04441_consen 59 TLKISQLKGYLCNLLNINEDIIIYSHKNNLEYSYVDNTIFNPFTHTQKKTLI-----KSDSFLYNIYPDA 123 (700)
T ss_pred EEEHHHhhhHHHHhhCCCccEEEEEeccCceEEeecCcccCCcchhhhceEe-----ccCceEEEecccc
Confidence 578899999999999998654443 4888854 522 2211100 2479999888653
No 90
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=30.35 E-value=80 Score=19.67 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=26.0
Q ss_pred CCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCC
Q 033514 44 TIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV 84 (117)
Q Consensus 44 ~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~ 84 (117)
.-.+.++.|.++.++.++..---++.++++++ --|.-|+.
T Consensus 5 ~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~-~~L~h~~k 44 (65)
T PF11470_consen 5 NFRRFKVKVTPNTTLNQVLEEACKKFGLDPSS-YDLKHNNK 44 (65)
T ss_dssp TS-EEEE---TTSBHHHHHHHHHHHTT--GGG--EEEETTE
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHcCCCccc-eEEEECCE
Confidence 34678899999999999999999999999883 34444443
No 91
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.21 E-value=87 Score=20.71 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=46.2
Q ss_pred CCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCC
Q 033514 42 IPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKD 101 (117)
Q Consensus 42 ~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd 101 (117)
-|.|.-+.+-||+...+..+..+--...+.++..|- +..|+-+ ..+.++-|++|=++.+
T Consensus 23 dpklpfkv~svpestpftavlkfaaeefkvpaatsa-iitndgiginpaq~agnvflkhgs 82 (94)
T KOG3483|consen 23 DPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSA-IITNDGIGINPAQTAGNVFLKHGS 82 (94)
T ss_pred CCCCccceecCCCCCchHHHHHHHHHHccCCcccee-EEecCccccCccccccceeeccCC
Confidence 466777888899999999999999999999887764 4455544 6777788888888765
No 92
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=29.89 E-value=93 Score=19.59 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=39.4
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 52 vp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
+..+.||+++...|..+.++++.+- =|+.++.....+.+|++ |.-. ++.++++.-..
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~Q-rLi~~Gk~L~D~~tL~~-y~i~--~~~~i~l~~~~ 75 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQ-RLFYRGKQMEDGHTLFD-YNVG--LNDIIQLLVRQ 75 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHe-EEEeCCEECCCCCCHHH-cCCC--CCCEEEEEEec
Confidence 5788999999999999988876543 33346666677788866 3222 35577776543
No 93
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=29.58 E-value=69 Score=25.14 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=54.6
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCC---CchHHHHHHHHHhhCCCCCce
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAERSD--IPTIDK--------KKYLVPAD---LTVGQFVYVIRKRIKLSAEKA 76 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~p~l~k--------~Kflvp~~---~tv~~~~~~lrk~L~l~~~~s 76 (117)
-|.|||++-.+...+.-.+++|||+--...+- +-.+-+ --.++|+. .+-.+++.+.+.=..-.++-.
T Consensus 51 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lp 130 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLN 130 (290)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 47899999999999988999999997653221 000000 01122221 123555555554333233467
Q ss_pred EEEEEcCCC---CCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 77 IFIFVDNVL---PPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 77 lfl~Vn~~~---p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
+++|=+-.. +-+.+.+.+|-+ + +.+..|.+|+.
T Consensus 131 v~lYn~P~~tg~~l~~~~i~~L~~-~---pnv~giK~s~~ 166 (290)
T TIGR00683 131 MIVYSIPFLTGVNMGIEQFGELYK-N---PKVLGVKFTAG 166 (290)
T ss_pred EEEEeCccccccCcCHHHHHHHhc-C---CCEEEEEeCCC
Confidence 888844222 222335555642 2 45777777643
No 94
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=29.39 E-value=69 Score=22.35 Aligned_cols=33 Identities=6% Similarity=0.155 Sum_probs=28.8
Q ss_pred cCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514 53 PADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (117)
Q Consensus 53 p~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~ 85 (117)
....++.+++..|++-|.-.+.+.+.|-+++..
T Consensus 66 ~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~~ 98 (135)
T smart00148 66 TLPIKLSEVLEAIKDFAFVTSPYPVILSLENHC 98 (135)
T ss_pred cccEEHHHHHHHHHHHHHhCCCCcEEEeehhhC
Confidence 345789999999999999999999999998754
No 95
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=29.36 E-value=1.5e+02 Score=19.48 Aligned_cols=22 Identities=5% Similarity=0.363 Sum_probs=16.9
Q ss_pred eEEecCC-CchHHHHHHHHHhhC
Q 033514 49 KYLVPAD-LTVGQFVYVIRKRIK 70 (117)
Q Consensus 49 Kflvp~~-~tv~~~~~~lrk~L~ 70 (117)
.+-+|.+ .|+.+++..+.+..+
T Consensus 13 ~~~~~~~~~t~~~L~~~v~~~F~ 35 (81)
T cd06401 13 RIPIHNEDITYDELLLMMQRVFR 35 (81)
T ss_pred EEeccCccccHHHHHHHHHHHhc
Confidence 3667764 799999999987665
No 96
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=28.92 E-value=1.1e+02 Score=21.99 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=22.1
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCc
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~ 75 (117)
...+.||.+.|+++|-.+|..-++.....
T Consensus 19 wRri~Vp~~~tl~~Lh~~Iq~afgw~~~H 47 (179)
T PF07929_consen 19 WRRIEVPADITLADLHEVIQAAFGWDDDH 47 (179)
T ss_dssp EEEEEEETT-BHHHHHHHHHHHTT----S
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCcCCCE
Confidence 67889999999999999999999987554
No 97
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=28.56 E-value=72 Score=24.75 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC---------CCCCccc-eEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD---------IPTIDKK-KYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~---------~p~l~k~-Kflvp~~~---tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.+||++-.+..++..++++|||+--...+- +-.+.-. -.++|+.. +-.++..+.+.=..-. .-
T Consensus 50 ~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~-~~ 128 (292)
T PRK03170 50 TLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT-DL 128 (292)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CC
Confidence 457899999999999999999999986654221 0001101 12223322 2244544444333222 35
Q ss_pred eEEEEEcCC---CCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 76 AIFIFVDNV---LPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 76 slfl~Vn~~---~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
.+++|=+-. ..-+.+.+.+| .++ ..+..+.+++.
T Consensus 129 pv~lYn~P~~~g~~l~~~~~~~L-~~~---p~v~giK~s~~ 165 (292)
T PRK03170 129 PIILYNVPGRTGVDILPETVARL-AEH---PNIVGIKEATG 165 (292)
T ss_pred CEEEEECccccCCCCCHHHHHHH-HcC---CCEEEEEECCC
Confidence 788884311 12223566777 333 45777777654
No 98
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=28.52 E-value=72 Score=24.91 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
-|.|||..-.+...+.-++++|||+--..
T Consensus 54 Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 54 LSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 46799999999999999999999997654
No 99
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=28.50 E-value=78 Score=26.93 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCC
Q 033514 1 MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSD 41 (117)
Q Consensus 1 ~~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~ 41 (117)
||+..|....+.++|..++.+.....|+++||=+|-+.-.+
T Consensus 216 mm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~~d 256 (445)
T cd01938 216 MMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELASTVD 256 (445)
T ss_pred hhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEeccccc
Confidence 56666767777899999999999999999999999976433
No 100
>PRK11347 antitoxin ChpS; Provisional
Probab=28.32 E-value=1.3e+02 Score=19.61 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHHhhCCCCCceEEEEEcC-CC---C-CccchHHHHHhHcC
Q 033514 63 YVIRKRIKLSAEKAIFIFVDN-VL---P-PTGAIMSTIYDEKK 100 (117)
Q Consensus 63 ~~lrk~L~l~~~~slfl~Vn~-~~---p-~~~~~l~~lY~~~k 100 (117)
..+.++|++..++.+.+-|.+ .+ | ...-++.+|...+.
T Consensus 18 k~il~~l~l~~G~~v~i~v~~~~iii~p~~~~~tL~eLla~~~ 60 (83)
T PRK11347 18 NIVMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCD 60 (83)
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCCHHHHHhcCC
Confidence 456799999999999999875 33 4 34468999999884
No 101
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=28.30 E-value=1.6e+02 Score=18.51 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.1
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhCCCCC---ceEEEEE
Q 033514 43 PTIDKKKYLVPADLTVGQFVYVIRKRIKLSAE---KAIFIFV 81 (117)
Q Consensus 43 p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~---~slfl~V 81 (117)
|.-.-+-..|+.+.|.++++..+-++++++.. =+||..+
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 44556677899999999999999999999763 4566665
No 102
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=27.64 E-value=78 Score=24.95 Aligned_cols=99 Identities=10% Similarity=0.100 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCC----------Cc-cceEEecCCC---chHHHHHHHHHhhCCCCC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPT----------ID-KKKYLVPADL---TVGQFVYVIRKRIKLSAE 74 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~----------l~-k~Kflvp~~~---tv~~~~~~lrk~L~l~~~ 74 (117)
.-|.|||++-.+...+.-.+++|||+--.. ++.+ +. .--.++|+.. +=.++..+.+.=..-. .
T Consensus 56 ~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~--~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~-~ 132 (303)
T PRK03620 56 SLTPDEYSQVVRAAVETTAGRVPVIAGAGG--GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKST-D 132 (303)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-C
Confidence 346799999999999988999999986643 2110 00 0012222221 1233333333222211 2
Q ss_pred ceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 75 KAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 75 ~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
-.+++|=+....-+.+.+.+|-+++ +++..|.+|+.
T Consensus 133 lpi~lYn~~g~~l~~~~l~~L~~~~---pni~giK~s~~ 168 (303)
T PRK03620 133 LGVIVYNRDNAVLTADTLARLAERC---PNLVGFKDGVG 168 (303)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 4578874322332345677776555 45777777653
No 103
>PHA01078 putative upper collar protein
Probab=27.40 E-value=95 Score=24.32 Aligned_cols=45 Identities=22% Similarity=0.524 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCCCceEEEEEcCCCCCcc-chHHHHHhHcCCCCCeEEE
Q 033514 60 QFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSTIYDEKKDEDGFLYV 108 (117)
Q Consensus 60 ~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~-~~l~~lY~~~kd~DGfLyv 108 (117)
.+..-++++| .++-+++.+++.+|+.+ ..+-.+|+.+-. ..|.++
T Consensus 20 n~~~~~~~~l---~~~di~fi~~~~l~~~~~~~~~~~~d~~~~-GnfVV~ 65 (249)
T PHA01078 20 NFNFQFQKRL---TKEDIYFIVPDYLIPDDCLQIHKLYDNCMS-GNFVVM 65 (249)
T ss_pred ccchhhhccc---cCCceEEEecCccCCchHHHHHHHhccccc-CCEEEE
Confidence 3445566776 34578999999998777 478888887754 335444
No 104
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=26.95 E-value=67 Score=24.85 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC---------CCCCccc-eEEecCC---CchHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD---------IPTIDKK-KYLVPAD---LTVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~---------~p~l~k~-Kflvp~~---~tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.+||+.-.+...+.-++++|||+--...+- +-.+.-. -.++|+- .+-.++..+.+.=.. ..+-
T Consensus 50 ~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~-~~~~ 128 (289)
T PF00701_consen 50 SLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIAD-ATDL 128 (289)
T ss_dssp GS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHH-HSSS
T ss_pred cCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHh-hcCC
Confidence 457899999999999988999999997664321 0001101 1223322 234445555543331 2345
Q ss_pred eEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 76 AIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 76 slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
.+++|-+- ...-+.+++.+|.+ + +++-.+.+++-
T Consensus 129 pi~iYn~P~~tg~~ls~~~l~~L~~-~---~nv~giK~s~~ 165 (289)
T PF00701_consen 129 PIIIYNNPARTGNDLSPETLARLAK-I---PNVVGIKDSSG 165 (289)
T ss_dssp EEEEEEBHHHHSSTSHHHHHHHHHT-S---TTEEEEEESSS
T ss_pred CEEEEECCCccccCCCHHHHHHHhc-C---CcEEEEEcCch
Confidence 78888764 12333345666666 4 45666666543
No 105
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=26.92 E-value=1.3e+02 Score=20.95 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=28.1
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCC------CCceEEEEEcC
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLS------AEKAIFIFVDN 83 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~------~~~slfl~Vn~ 83 (117)
+..-|++++|..+++..|-++...+ ++=|||....|
T Consensus 38 K~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~n 79 (112)
T cd01782 38 KCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHEN 79 (112)
T ss_pred EEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecC
Confidence 3446999999999999999888733 56788887654
No 106
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=26.84 E-value=1.6e+02 Score=18.70 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=26.6
Q ss_pred EecCCCchHHHHHHHHHhhCCCCC-ceEEEEEcC
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDN 83 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~-~slfl~Vn~ 83 (117)
.+|.++|++++..-|-+..+++++ +.|.+|-+.
T Consensus 18 r~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~ 51 (84)
T cd01789 18 KYSRGLTIAELKKKLELVVGTPASSMRLQLFDGD 51 (84)
T ss_pred ecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC
Confidence 589999999999999999999765 555556654
No 107
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=26.58 E-value=63 Score=20.23 Aligned_cols=18 Identities=39% Similarity=0.528 Sum_probs=14.4
Q ss_pred HHHHhhCCCcccEEEEcc
Q 033514 20 ERIREKYPDRIPVIVEKA 37 (117)
Q Consensus 20 ~~i~~k~p~~ipVIve~~ 37 (117)
..+.++|..+|||+.-..
T Consensus 40 ~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 40 PELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp HHHHHHSCTSTSEEEETT
T ss_pred HHHHHHhcCCCCEEEEcC
Confidence 347889999999987554
No 108
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=26.20 E-value=4.5e+02 Score=23.10 Aligned_cols=87 Identities=11% Similarity=0.243 Sum_probs=57.3
Q ss_pred CCCcccEEEEccCCCCCCC-CccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCC
Q 033514 26 YPDRIPVIVEKAERSDIPT-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 104 (117)
Q Consensus 26 ~p~~ipVIve~~~~~~~p~-l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG 104 (117)
-.+.|+|-+.+...=.+|. -++.-.+|-.-.=++-|..+|+.+......-.+.||.++.-...|-.-.+=.+.+. .+|
T Consensus 432 ~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~-~~g 510 (600)
T PRK10953 432 EEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYV-KEG 510 (600)
T ss_pred CCCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHH-HcC
Confidence 3577888775543335663 34556678888889999999998886655456778887766666655555555553 244
Q ss_pred e---EEEEecCc
Q 033514 105 F---LYVTYSGE 113 (117)
Q Consensus 105 f---Lyv~Ys~~ 113 (117)
. |.+.||.+
T Consensus 511 ~l~~l~~afSRd 522 (600)
T PRK10953 511 LLTRIDLAWSRD 522 (600)
T ss_pred CcceEEEEECCC
Confidence 3 56777744
No 109
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=26.02 E-value=95 Score=17.49 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.7
Q ss_pred HHHHHhhCCCCCceEEEEEcC
Q 033514 63 YVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 63 ~~lrk~L~l~~~~slfl~Vn~ 83 (117)
.-+|+.+++.+++.+.+.+++
T Consensus 13 k~~~~~l~l~~Gd~v~i~~~~ 33 (47)
T PF04014_consen 13 KEIREKLGLKPGDEVEIEVEG 33 (47)
T ss_dssp HHHHHHTTSSTTTEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEeC
Confidence 457899999999999998864
No 110
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=25.83 E-value=82 Score=16.61 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHhhCCC
Q 033514 11 EFEKRRAEAERIREKYPD 28 (117)
Q Consensus 11 ~~e~R~~e~~~i~~k~p~ 28 (117)
.|-+|.++....-++||+
T Consensus 11 eFY~rlk~Ike~Hrr~Pn 28 (28)
T PF12108_consen 11 EFYERLKEIKEYHRRYPN 28 (28)
T ss_dssp HHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 367899999999899986
No 111
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=25.72 E-value=1.9e+02 Score=20.38 Aligned_cols=51 Identities=4% Similarity=0.032 Sum_probs=35.1
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCc--eEEEEEcC----CCCCccchHHHHHh
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEK--AIFIFVDN----VLPPTGAIMSTIYD 97 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~--slfl~Vn~----~~p~~~~~l~~lY~ 97 (117)
...+.+.+..|+.+++..+.+++++...+ +||....+ ..+.++.+|.+.-.
T Consensus 15 ~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~ 71 (207)
T smart00295 15 TLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDV 71 (207)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcC
Confidence 45688999999999999999999996543 33443332 12455666665543
No 112
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=25.60 E-value=1.4e+02 Score=17.76 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=24.5
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~ 85 (117)
.+.+-+++..|+.++... |++++ +.+-+-||+.+
T Consensus 5 g~~~~~~~~~tv~~ll~~----l~~~~-~~v~v~vN~~i 38 (64)
T TIGR01683 5 GEPVEVEDGLTLAALLES----LGLDP-RRVAVAVNGEI 38 (64)
T ss_pred CeEEEcCCCCcHHHHHHH----cCCCC-CeEEEEECCEE
Confidence 445667888898887664 45665 57788899865
No 113
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=25.49 E-value=1.6e+02 Score=18.37 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=38.6
Q ss_pred eEEecCCCchHHHHHHHHHhhC---CCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIK---LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~---l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
+|.-....++.++..-||+.-= +.....+|+.-||.- +-=.||..+||-+..+|.
T Consensus 5 ~~vp~~~~~v~d~K~~Lr~y~~~~I~~d~tGfYIvF~~~~--------Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 5 KFVPVHGVTVEDFKKRLRKYRWDRIRDDRTGFYIVFNDSK--------EAERCFRAEDGTLFFTYR 62 (66)
T ss_pred ccCCCCCccHHHHHHHHhcCCcceEEecCCEEEEEECChH--------HHHHHHHhcCCCEEEEEE
Confidence 3444556788888777775431 445678888877643 777888888999988885
No 114
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=25.34 E-value=75 Score=19.99 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=23.9
Q ss_pred CCCchHHHHHHHHHhhC-----CCCCceEEEEEcCCCCCccc
Q 033514 54 ADLTVGQFVYVIRKRIK-----LSAEKAIFIFVDNVLPPTGA 90 (117)
Q Consensus 54 ~~~tv~~~~~~lrk~L~-----l~~~~slfl~Vn~~~p~~~~ 90 (117)
...|++++...|..+.. +. ...+-++||..+-+.+.
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~-~~~~~~aVN~~~~~~~~ 64 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALE-DGKLLAAVNQTLVSFDH 64 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhc-CCCEEEEECCEEcCCCC
Confidence 35799999999987742 22 34466889986544443
No 115
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=25.22 E-value=91 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.6
Q ss_pred ccchHHHHHhHcCCCCCeEEEEec
Q 033514 88 TGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 88 ~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
....+..+|++|++.+|+.+++-+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~i~ 43 (155)
T PF14060_consen 20 QGQSLQKYFDKYSENKGVTSVNIS 43 (155)
T ss_pred cchhHHHHHHHhCCCCCeEEEEEC
Confidence 357889999999999999998765
No 116
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.09 E-value=93 Score=23.95 Aligned_cols=100 Identities=9% Similarity=0.078 Sum_probs=55.0
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC---------CCCCccc-eEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD---------IPTIDKK-KYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~---------~p~l~k~-Kflvp~~~---tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.+||++-.+..++...+++|||+--...+- +-.+.-. -.++|+.. +-.++..+.++=..- .+-
T Consensus 49 ~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~-~~~ 127 (284)
T cd00950 49 TLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA-TDL 127 (284)
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc-CCC
Confidence 457899999999999999999999986654211 0001100 12222221 224455555443332 246
Q ss_pred eEEEEEcCC-C--CCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 76 AIFIFVDNV-L--PPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 76 slfl~Vn~~-~--p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
.+++|=+-. . .-+.+.+.+|-+ .+.+..+.+|+.
T Consensus 128 pi~lYn~P~~~g~~ls~~~~~~L~~----~p~v~giK~s~~ 164 (284)
T cd00950 128 PVILYNVPGRTGVNIEPETVLRLAE----HPNIVGIKEATG 164 (284)
T ss_pred CEEEEEChhHhCCCCCHHHHHHHhc----CCCEEEEEECCC
Confidence 788884422 1 112235566653 256777777653
No 117
>PLN02417 dihydrodipicolinate synthase
Probab=24.97 E-value=94 Score=24.21 Aligned_cols=97 Identities=8% Similarity=0.052 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCc-cceEEecCC---CchHHHHHHHHHhhCCCCCce
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAERSD--I-------PTID-KKKYLVPAD---LTVGQFVYVIRKRIKLSAEKA 76 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~-------p~l~-k~Kflvp~~---~tv~~~~~~lrk~L~l~~~~s 76 (117)
-|.+||.+-.+...+.-++++|||+--...+- + -.+. .--.++|+. .+-.++..+.+.-... . .
T Consensus 51 ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~--~-p 127 (280)
T PLN02417 51 MSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM--G-P 127 (280)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh--C-C
Confidence 46799999998888888999999997764321 0 0000 001122221 1224455554443332 2 7
Q ss_pred EEEEEcCC---CCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 77 IFIFVDNV---LPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 77 lfl~Vn~~---~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
+++|=+-. ..-+.+++.+|- + .+.+..|.+++.
T Consensus 128 i~lYn~P~~tg~~l~~~~l~~l~-~---~pni~giKdss~ 163 (280)
T PLN02417 128 TIIYNVPGRTGQDIPPEVIFKIA-Q---HPNFAGVKECTG 163 (280)
T ss_pred EEEEEChhHhCcCCCHHHHHHHh-c---CCCEEEEEeCCC
Confidence 88884321 122234666664 2 256777777653
No 118
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=24.77 E-value=76 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhCCCcccE
Q 033514 13 EKRRAEAERIREKYPDRIPV 32 (117)
Q Consensus 13 e~R~~e~~~i~~k~p~~ipV 32 (117)
.++++..+.|++|+.+.|||
T Consensus 35 q~~q~Wl~sI~ekd~nlvPI 54 (92)
T PF15243_consen 35 QQHQAWLQSIAEKDNNLVPI 54 (92)
T ss_pred HHHHHHHHHHHHhccCcCcc
Confidence 46788999999999999886
No 119
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=24.68 E-value=1.4e+02 Score=19.83 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=30.3
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEEEc-CC---CCCccchHHH
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NV---LPPTGAIMST 94 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn-~~---~p~~~~~l~~ 94 (117)
..++..||+.+...+|+.+.++.+..|+-+-+ |. |..++.+|.+
T Consensus 19 ~FSk~DTI~~v~~~~rklf~i~~E~RLW~~~~~~~~e~L~~~~~Tv~d 66 (88)
T PF14836_consen 19 QFSKTDTIGFVEKEMRKLFNIQEETRLWNKYSENSYELLNNPEITVED 66 (88)
T ss_dssp EE-TTSBHHHHHHHHHHHCT-TS-EEEEEECTTTCEEEE--TTSBTTT
T ss_pred hccccChHHHHHHHHHHHhCCCccceehhccCCcchhhhCCCCccHHH
Confidence 57889999999999999999977778887665 33 3355556654
No 120
>PRK08577 hypothetical protein; Provisional
Probab=24.56 E-value=80 Score=21.84 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCceEEEEEcC
Q 033514 63 YVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 63 ~~lrk~L~l~~~~slfl~Vn~ 83 (117)
.-+|+.|++.+++.+-+++++
T Consensus 19 ~~~r~~l~~~~g~~~~~~~~~ 39 (136)
T PRK08577 19 LEIREALGIREGMYVLLIADT 39 (136)
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 357999999999999999875
No 121
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.1e+02 Score=23.00 Aligned_cols=36 Identities=14% Similarity=0.359 Sum_probs=26.1
Q ss_pred EEEEEcC-C----CCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 77 IFIFVDN-V----LPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 77 lfl~Vn~-~----~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
+-|+||= + .++.=..|.+||++|++ .||..+.+--.
T Consensus 36 V~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~-~Gl~ILaFPCN 76 (171)
T KOG1651|consen 36 VVLIVNVASQCGLTESQYTELNELYEKYKD-QGLEILAFPCN 76 (171)
T ss_pred EEEEEEcccccccchhcchhHHHHHHHHhh-CCeEEEEeccc
Confidence 4566773 1 25566799999999976 88999887543
No 122
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=24.19 E-value=68 Score=22.21 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHHHHhhCCCc
Q 033514 10 HEFEKRRAEAERIREKYPDR 29 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ 29 (117)
..||.|...-+..|-|||+.
T Consensus 33 l~fek~i~kN~e~R~K~~dd 52 (108)
T PF08216_consen 33 LSFEKRINKNQEMRIKYPDD 52 (108)
T ss_pred HHHHHHHHHhHHHHHhCCCC
Confidence 46899999999999999974
No 123
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=24.18 E-value=3e+02 Score=20.36 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccC-CCCCCCCccceEEe--cCCCchHHHHHHHHHhhCCCCCc
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAE-RSDIPTIDKKKYLV--PADLTVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~-~~~~p~l~k~Kflv--p~~~tv~~~~~~lrk~L~l~~~~ 75 (117)
.+|+.|.+...+....--....+|+.... .+.++.-..--.+| |++.+.+.-++-+|.+.+++|=+
T Consensus 54 ~p~~~R~~~l~~fl~~~~~~~~~iv~i~Dp~G~t~~~~~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~ 122 (158)
T COG1019 54 EPYEVRLRNLRNFLESIKADYEEIVPIDDPYGPTVEDPDFEAIVVSPETYPGALKINEIREKRGLPPLE 122 (158)
T ss_pred CcHHHHHHHHHHHHHHhcCCcceEEEecCCCCCCCCcCceeEEEEccccchhHHHHHHHHHHCCCCCeE
Confidence 47999999998877665555556666554 34554443333443 55667888899999999999654
No 124
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=24.17 E-value=62 Score=21.03 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=22.0
Q ss_pred ceEEEEEcCCC---CCccchHHHHHhHcCC
Q 033514 75 KAIFIFVDNVL---PPTGAIMSTIYDEKKD 101 (117)
Q Consensus 75 ~slfl~Vn~~~---p~~~~~l~~lY~~~kd 101 (117)
...|.+||+.. +++++.+..|++.=++
T Consensus 45 ~~pFAlVnG~~V~A~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 45 KKPFALVNGEIVAAETAEELLEKIKEKIEE 74 (78)
T ss_pred CCccEEECCEEEecCCHHHHHHHHHHHHhc
Confidence 57899999953 7888999999987654
No 125
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=23.80 E-value=78 Score=21.74 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=19.4
Q ss_pred CceEEEEEcCCC---CCccchHHHHHhHc
Q 033514 74 EKAIFIFVDNVL---PPTGAIMSTIYDEK 99 (117)
Q Consensus 74 ~~slfl~Vn~~~---p~~~~~l~~lY~~~ 99 (117)
.+..|+|||+.. +.....+.+.|..+
T Consensus 47 ~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~ 75 (127)
T cd03483 47 KIIFILFINNRLVECSALRRAIENVYANY 75 (127)
T ss_pred CceEEEEEcCCEecCHHHHHHHHHHHHHh
Confidence 567899999964 45566777778776
No 126
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=23.69 E-value=2.1e+02 Score=18.47 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=41.0
Q ss_pred cEEEEccCCCCCCCCccceEEecC--CCchHHHHHHHHH--hhCCC-CCceEEEEEcC-CCCCccchHHHHHhHcCCCCC
Q 033514 31 PVIVEKAERSDIPTIDKKKYLVPA--DLTVGQFVYVIRK--RIKLS-AEKAIFIFVDN-VLPPTGAIMSTIYDEKKDEDG 104 (117)
Q Consensus 31 pVIve~~~~~~~p~l~k~Kflvp~--~~tv~~~~~~lrk--~L~l~-~~~slfl~Vn~-~~p~~~~~l~~lY~~~kd~DG 104 (117)
|-.|--+.+++.. -...+++|+. -.++.+|...|.+ .|.+. +-..||=. ++ .+.+ +.+| +||
T Consensus 5 ~k~i~~~rNGD~~-~~g~~~~v~~~~~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~-~G~~v~~----l~~l------~~g 72 (89)
T smart00537 5 PKRIRFYRNGDRF-FKGVRLVVNRKRFKSFEALLQDLTEVVKLDLPHGVRKLYTL-DGKKVTS----LDEL------EDG 72 (89)
T ss_pred ceEEEEEeCCCCC-CCCEEEEEChhhcCCHHHHHHHHhhhcccCCCCCeeEEEcC-CCCEECC----HHHh------CcC
Confidence 4344445556643 3567888886 4589999999999 55444 22233211 11 1222 2222 378
Q ss_pred eEEEEecCc
Q 033514 105 FLYVTYSGE 113 (117)
Q Consensus 105 fLyv~Ys~~ 113 (117)
-.||..+.+
T Consensus 73 ~~yVa~g~e 81 (89)
T smart00537 73 GSYVASGTE 81 (89)
T ss_pred CEEEEEcCC
Confidence 889988877
No 127
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=23.57 E-value=1e+02 Score=21.07 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=23.8
Q ss_pred ccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCC
Q 033514 8 IEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDI 42 (117)
Q Consensus 8 ~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~ 42 (117)
.+.||++-......++...++.+|+|+= ..+.++
T Consensus 84 ~~~sf~~~~~~~~~~~~~~~~~~~iilv-gnK~Dl 117 (161)
T cd04117 84 SERSYQHIMKWVSDVDEYAPEGVQKILI-GNKADE 117 (161)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCeEEEE-EECccc
Confidence 4567888777778787777788998873 334443
No 128
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=23.56 E-value=1.1e+02 Score=24.03 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCchHHHHHHHHHhhCCCCCceEEEEEcCCC-C--CccchHHHHHhHcCCCCCeEEE
Q 033514 55 DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-P--PTGAIMSTIYDEKKDEDGFLYV 108 (117)
Q Consensus 55 ~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p--~~~~~l~~lY~~~kd~DGfLyv 108 (117)
..++.+++..|++-|.-.+.+.+.|-+++.. + .....|.+.+.... +.+||.
T Consensus 73 ~~~f~dvl~~i~~fl~~~p~e~vIlsl~~~~~~~~~~q~~~~~~~~~~~--g~~l~~ 127 (274)
T cd00137 73 DIFLKEVIEAIAQFLKKNPPETIIMSLKNEVDSMDSFQAKMAEYCRTIF--GDMLLT 127 (274)
T ss_pred CcCHHHHHHHHHHHHHHCCCCeEEEEEEecCCCcHHHHHHHHHHHHHhh--hhhhcc
Confidence 6789999999999999999999999998744 3 55567777777663 335543
No 129
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.13 E-value=3.2e+02 Score=22.71 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=41.8
Q ss_pred EEecCCCchHHHHHHHHHhhC---CCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 50 YLVPADLTVGQFVYVIRKRIK---LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~---l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
+-|..+.||++|...|...-+ +..++ +=|..++.+...+.+|++ |. - .++.+|++--+.
T Consensus 15 IeV~~~~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GkiL~Dd~tL~d-y~-I-~e~~~Ivvmv~k 76 (378)
T TIGR00601 15 IDMEPDETVKELKEKIEAEQGKDAYPVAQ-QKLIYSGKILSDDKTVRE-YK-I-KEKDFVVVMVSK 76 (378)
T ss_pred EEeCCcChHHHHHHHHHHhhCCCCCChhH-eEEEECCEECCCCCcHHH-cC-C-CCCCEEEEEecc
Confidence 347899999999999998876 65543 455667777777778876 32 2 246688877654
No 130
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=22.78 E-value=59 Score=21.74 Aligned_cols=23 Identities=13% Similarity=0.420 Sum_probs=17.8
Q ss_pred CchHHHHHHHHHhhCCCCCceEEE
Q 033514 56 LTVGQFVYVIRKRIKLSAEKAIFI 79 (117)
Q Consensus 56 ~tv~~~~~~lrk~L~l~~~~slfl 79 (117)
..+.+|+...++.|++++++ +|.
T Consensus 44 ~ai~~Fi~ack~~L~~~~~e-~Ft 66 (89)
T PF06395_consen 44 KAIYKFIQACKQELGFPDEE-LFT 66 (89)
T ss_pred HHHHHHHHHHHHhcCCCccc-eee
Confidence 46789999999999997554 454
No 131
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=22.44 E-value=1.1e+02 Score=23.80 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||..-.+...+.-.+++|||+--..
T Consensus 50 ~Lt~~Er~~~~~~~~~~~~~~~~viagv~~ 79 (288)
T cd00954 50 LLSVEERKQIAEIVAEAAKGKVTLIAHVGS 79 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEeccCC
Confidence 456899999999888888899999996543
No 132
>COG2879 Uncharacterized small protein [Function unknown]
Probab=22.16 E-value=64 Score=20.41 Aligned_cols=14 Identities=43% Similarity=0.840 Sum_probs=11.4
Q ss_pred HHHHHhhCCCcccE
Q 033514 19 AERIREKYPDRIPV 32 (117)
Q Consensus 19 ~~~i~~k~p~~ipV 32 (117)
++-.|.+||+++|.
T Consensus 29 Vehmr~~hPd~p~m 42 (65)
T COG2879 29 VEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHhCcCCCcc
Confidence 56778999999875
No 133
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=21.94 E-value=2e+02 Score=22.45 Aligned_cols=48 Identities=29% Similarity=0.491 Sum_probs=33.3
Q ss_pred HHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHH-------HHHHHHhhCCCCCceEEEEEcCC
Q 033514 20 ERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQF-------VYVIRKRIKLSAEKAIFIFVDNV 84 (117)
Q Consensus 20 ~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~-------~~~lrk~L~l~~~~slfl~Vn~~ 84 (117)
++..+++|+++.+|- . . ...+|.+|+ -..|+ ++++++++.+-++++|.
T Consensus 2 ~~~a~~~pd~~a~~~--~--~------------~~~~Ty~~l~~~v~~la~~L~-~~g~~~~~~V~i~~~n~ 56 (417)
T PF00501_consen 2 ERQAQRYPDRIALID--D--E------------GRSLTYKQLYERVRKLAAALR-KLGVKKGDRVAILLPNS 56 (417)
T ss_dssp HHHHHHSTTSEEEEE--T--T------------TEEEEHHHHHHHHHHHHHHHH-HTTSSTTSEEEEEESSS
T ss_pred hhHHhhCCCceEEEE--C--C------------CEEEEHHHHHHHHHHHhhHHH-HhCCCccccccccCCcc
Confidence 345678999999988 1 1 123444444 45555 67899999999999885
No 134
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=21.87 E-value=1.4e+02 Score=17.88 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=30.2
Q ss_pred cceEEecCCCchHHHHHHHHHhhC-CCCCceEEEEEcCCCC
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLP 86 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~-l~~~~slfl~Vn~~~p 86 (117)
.....++...|++++...|..+.. +...+.+-+.||+...
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v 53 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIV 53 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEc
Confidence 345678999999999999987762 2233678899998663
No 135
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.85 E-value=92 Score=23.74 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=10.8
Q ss_pred CCCCeEEEEecCcccCC
Q 033514 101 DEDGFLYVTYSGENTFG 117 (117)
Q Consensus 101 d~DGfLyv~Ys~~~~fG 117 (117)
..|||||| +..+.+|
T Consensus 151 ~~~~~l~m--sv~~~~g 165 (244)
T PRK13125 151 LSPLFIYY--GLRPATG 165 (244)
T ss_pred hCCCEEEE--EeCCCCC
Confidence 46999999 5565555
No 136
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.25 E-value=1.2e+02 Score=24.13 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAER 39 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~ 39 (117)
.-|.|||++-.+..++---+|||||+--..+
T Consensus 53 ~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~ 83 (299)
T COG0329 53 TLTLEERKEVLEAVVEAVGGRVPVIAGVGSN 83 (299)
T ss_pred hcCHHHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 3577999999999999999999999976654
No 137
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=21.22 E-value=1.2e+02 Score=23.72 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=25.3
Q ss_pred cCCCchHHHHHHHH--------HhhCCCCCceEEEEEcC
Q 033514 53 PADLTVGQFVYVIR--------KRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 53 p~~~tv~~~~~~lr--------k~L~l~~~~slfl~Vn~ 83 (117)
..+.|...|..+|+ +.|...+++.||+|..+
T Consensus 77 g~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~ 115 (256)
T PF01650_consen 77 GEDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTG 115 (256)
T ss_pred ccccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEec
Confidence 34788999999999 45567899999999964
No 138
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=21.01 E-value=68 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=26.7
Q ss_pred CCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514 54 ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (117)
Q Consensus 54 ~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~ 85 (117)
...++.++...+++-|.-.|++.+.|-+++..
T Consensus 65 ~~~~~~dvL~~i~~fl~~~p~E~VIl~~~~~~ 96 (146)
T PF00388_consen 65 SGITFEDVLNDIRDFLFEHPSEPVILSLKHEY 96 (146)
T ss_dssp -EEEHHHHHHHHHHHTTHSTTS-EEEEEEEES
T ss_pred eeEeHHHHHHHHHHHHhcCCCeEEEEEeeccc
Confidence 45799999999999999999999999998643
No 139
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.00 E-value=1.6e+02 Score=18.10 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=14.1
Q ss_pred chHHHHHhHcCCCCCeEEEEec
Q 033514 90 AIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 90 ~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
..|.++|++|++.+++=.|.-+
T Consensus 21 ~~l~~l~~~~~~~~~v~~v~Vs 42 (95)
T PF13905_consen 21 PKLKELYKKYKKKDDVEFVFVS 42 (95)
T ss_dssp HHHHHHHHHHTTTTTEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEEE
Confidence 4778888888865554444443
No 140
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=20.99 E-value=1.3e+02 Score=23.61 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=24.6
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEcc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKA 37 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~ 37 (117)
.-|.|||..-.+...+.-.+++|||+--.
T Consensus 54 ~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~ 82 (296)
T TIGR03249 54 SLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 34679999999989888899999999764
No 141
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=20.79 E-value=1.7e+02 Score=25.53 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=40.9
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCC
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 104 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG 104 (117)
|.-|-|+.+.||.+|...|-++.+.++++ +-|.-.+++...+.++. .|+-.||
T Consensus 26 k~~~~V~~~ssV~qlKE~I~~~f~a~~dq-lvLIfaGrILKD~dTL~----~~gI~Dg 78 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKELIAQRFGAPPDQ-LVLIYAGRILKDDDTLK----QYGIQDG 78 (493)
T ss_pred ceeEecccchHHHHHHHHHHHhcCCChhH-eeeeecCccccChhhHH----HcCCCCC
Confidence 67789999999999999999999887665 44544566666777775 3566677
No 142
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=20.41 E-value=71 Score=21.49 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=19.1
Q ss_pred CCCceEEEEEcCCC---CCccchHHHHHhHc
Q 033514 72 SAEKAIFIFVDNVL---PPTGAIMSTIYDEK 99 (117)
Q Consensus 72 ~~~~slfl~Vn~~~---p~~~~~l~~lY~~~ 99 (117)
...+..|+|||+.. +.....+.++|...
T Consensus 37 ~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~ 67 (119)
T PF01119_consen 37 SSRDRQFIFVNGRPVENKALSKAINEAYRER 67 (119)
T ss_dssp SSCTCEEEEETTEEE--HHHHHHHHHHHHCT
T ss_pred CCCCcEEEEeCCCeEeChHHHHHHHHHHhhc
Confidence 34578999999965 44555666777643
No 143
>PRK08123 histidinol-phosphatase; Reviewed
Probab=20.32 E-value=1.2e+02 Score=23.35 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHhhCCCcccEEE
Q 033514 11 EFEKRRAEAERIREKYPDRIPVIV 34 (117)
Q Consensus 11 ~~e~R~~e~~~i~~k~p~~ipVIv 34 (117)
.+++-..+..+++++|+++|.|.+
T Consensus 63 ~~~~Y~~~i~~l~~ky~~~i~i~~ 86 (270)
T PRK08123 63 QLERYLKELNELKKKYAGQIDIRI 86 (270)
T ss_pred HHHHHHHHHHHHHHHccCCCeEEE
Confidence 588889999999999999988765
No 144
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=20.18 E-value=53 Score=22.20 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=19.2
Q ss_pred eEEec---CCCchHHHHHHHHHhhCCCCCceEEE
Q 033514 49 KYLVP---ADLTVGQFVYVIRKRIKLSAEKAIFI 79 (117)
Q Consensus 49 Kflvp---~~~tv~~~~~~lrk~L~l~~~~slfl 79 (117)
+.-+| ...|+++++..||+.+--+ ...+|+
T Consensus 21 ~v~l~~~~~~~ti~~Li~~l~~nll~~-r~elF~ 53 (96)
T PF09138_consen 21 KVSLPSDGEPATIKDLIDYLRDNLLKE-RPELFL 53 (96)
T ss_dssp EEEE-SSCSC-BHHHHHHHHCCCT-SS-GHHHHB
T ss_pred EEEcCCCCCCcCHHHHHHHHHHhccCC-CHhHEe
Confidence 45577 8889999999999877322 334443
No 145
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=20.04 E-value=1e+02 Score=23.87 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=35.5
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC--CCCeEEEEecCc
Q 033514 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD--EDGFLYVTYSGE 113 (117)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd--~DGfLyv~Ys~~ 113 (117)
+..-|.-..+++..+|...+++.-.++ + +.++.-..+.++|+++.+ -|..|+++.|+.
T Consensus 32 ~~~~y~D~~~i~~~efy~~l~~~~~~p-~---------TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~ 91 (280)
T PF02645_consen 32 DGKEYRDGVDISPEEFYEKLRESGEIP-K---------TSQPSPGEFEEAFEKLLEEGYDEIIVITISSG 91 (280)
T ss_dssp TTEEEETTTTSCHHHHHHHHHHTTSEE-E---------EE---HHHHHHHHHHHHHTTTSEEEEEES-TT
T ss_pred CCeEEecCCCCCHHHHHHHHHhcCCCc-e---------ecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcc
Confidence 344555556899999999887652221 1 134444577888887323 367999998864
Done!