Query 033514
Match_columns 117
No_of_seqs 111 out of 369
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 9.4E-56 3.2E-60 309.3 13.5 116 2-117 3-118 (118)
2 3m95_A Autophagy related prote 100.0 1.5E-55 5.1E-60 310.8 12.6 116 2-117 9-124 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 1.4E-54 4.8E-59 303.7 11.9 114 4-117 6-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 8.1E-53 2.8E-57 294.0 12.8 116 2-117 1-116 (117)
5 2zjd_A Microtubule-associated 100.0 8.7E-53 3E-57 298.5 9.9 115 2-117 9-125 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 2.6E-48 8.9E-53 268.5 12.1 110 3-112 1-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 9.9E-36 3.4E-40 199.6 10.0 85 32-117 6-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 3.5E-35 1.2E-39 198.6 8.7 85 27-117 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 9.6E-34 3.3E-38 189.9 9.2 85 27-117 6-91 (91)
10 2dyo_A Autophagy protein 5; ub 96.2 0.0073 2.5E-07 47.3 5.4 98 10-111 183-285 (297)
11 4gdk_B Autophagy protein 5; pr 95.8 0.024 8.1E-07 44.0 6.7 102 10-112 160-271 (275)
12 3vqi_A ATG5; autophagy, E3-lik 95.6 0.0097 3.3E-07 46.1 3.7 74 26-109 196-272 (274)
13 3goe_A DNA repair protein RAD6 93.8 0.088 3E-06 33.9 4.3 39 47-85 21-59 (82)
14 2uyz_B Small ubiquitin-related 85.7 1.8 6.2E-05 25.9 5.0 59 48-111 16-75 (79)
15 3a4r_A Nfatc2-interacting prot 85.2 2.5 8.7E-05 26.0 5.6 47 48-95 21-67 (79)
16 1oey_A P67-PHOX, neutrophil cy 84.5 3 0.0001 26.6 5.7 58 50-109 18-79 (83)
17 2k8h_A Small ubiquitin protein 83.5 6.3 0.00022 26.0 7.3 62 27-95 24-85 (110)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 82.3 6.2 0.00021 23.8 7.3 74 27-111 5-79 (87)
19 1wy8_A NP95-like ring finger p 82.1 3.2 0.00011 25.3 5.1 55 52-111 26-81 (89)
20 3mtn_B UBA80, ubcep1, ubiquiti 80.1 2 6.8E-05 25.8 3.6 58 49-111 17-75 (85)
21 1we7_A SF3A1 protein; structur 79.7 10 0.00034 24.6 7.5 85 22-111 18-107 (115)
22 2hj8_A Interferon-induced 17 k 79.6 3.5 0.00012 25.4 4.7 60 49-112 18-77 (88)
23 1wyw_B Ubiquitin-like protein 79.4 4.1 0.00014 25.7 5.0 76 26-111 18-93 (97)
24 3a9j_A Ubiquitin; protein comp 78.7 2.4 8.2E-05 24.7 3.5 58 49-111 14-72 (76)
25 1we6_A Splicing factor, putati 78.6 8 0.00028 24.8 6.4 81 21-111 19-103 (111)
26 3n3k_B Ubiquitin; hydrolase, p 78.2 1.9 6.4E-05 26.0 3.0 59 49-111 17-75 (85)
27 3plu_A Ubiquitin-like modifier 77.4 12 0.00041 24.2 7.7 81 19-110 11-92 (93)
28 2dzi_A Ubiquitin-like protein 77.3 2.4 8.2E-05 25.2 3.3 60 28-94 6-65 (81)
29 1ndd_A NEDD8, protein (ubiquit 77.3 2.9 0.0001 24.3 3.6 58 49-111 14-72 (76)
30 1uh6_A Ubiquitin-like 5; beta- 75.8 6.3 0.00022 25.7 5.2 59 49-111 42-100 (100)
31 1yqb_A Ubiquilin 3; structural 75.3 4.9 0.00017 25.6 4.5 74 27-112 20-94 (100)
32 4dwf_A HLA-B-associated transc 74.2 3.6 0.00012 25.2 3.6 74 27-111 3-76 (90)
33 3dbh_I NEDD8; cell cycle, acti 73.7 3.2 0.00011 25.1 3.2 58 49-110 26-83 (88)
34 2l7r_A Ubiquitin-like protein 73.1 8 0.00027 24.1 5.1 71 27-110 17-88 (93)
35 3phx_B Ubiquitin-like protein 73.0 4.8 0.00016 23.9 3.8 57 49-110 18-75 (79)
36 2kk8_A Uncharacterized protein 72.0 5.9 0.0002 24.4 4.2 56 50-110 25-82 (84)
37 2jxx_A Nfatc2-interacting prot 71.9 9.9 0.00034 24.6 5.4 47 48-95 39-85 (97)
38 3k9o_B Ubiquitin, UBB+1; E2-25 71.6 3.8 0.00013 25.3 3.3 58 49-111 15-73 (96)
39 1wx7_A Ubiquilin 3; ubiquitin- 71.4 9.8 0.00033 24.2 5.3 58 49-111 30-88 (106)
40 4eew_A Large proline-rich prot 70.8 4.9 0.00017 24.4 3.6 62 26-94 14-75 (88)
41 1yx5_B Ubiquitin; proteasome, 70.7 4.6 0.00016 25.2 3.5 59 49-112 14-73 (98)
42 2bwf_A Ubiquitin-like protein 70.5 5.2 0.00018 23.4 3.6 57 49-110 17-74 (77)
43 4dbg_A Ranbp-type and C3HC4-ty 70.4 17 0.00058 23.8 6.4 60 30-94 25-84 (105)
44 1ip9_A BEM1 protein; ubiquitin 70.3 5 0.00017 25.8 3.6 31 50-81 26-56 (85)
45 3v6c_B Ubiquitin; structural g 69.9 5.1 0.00017 24.7 3.6 56 49-109 31-87 (91)
46 4fbj_B NEDD8; effector-HOST ta 69.7 4.3 0.00015 25.1 3.2 58 49-111 14-72 (88)
47 2faz_A Ubiquitin-like containi 69.0 4.5 0.00015 23.9 3.0 56 50-110 18-75 (78)
48 1wx8_A Riken cDNA 4931431F19; 67.9 7.8 0.00027 24.0 4.2 71 28-110 16-87 (96)
49 4hcn_B Polyubiquitin, ubiquiti 67.3 5.1 0.00017 25.2 3.2 73 27-110 20-93 (98)
50 1sif_A Ubiquitin; hydrophobic 66.8 5.5 0.00019 24.5 3.2 57 49-110 23-80 (88)
51 1wm3_A Ubiquitin-like protein 66.7 9.9 0.00034 22.6 4.3 47 47-94 13-59 (72)
52 1j0g_A Hypothetical protein 18 66.4 23 0.00078 22.7 6.0 58 43-101 21-79 (92)
53 2kvr_A Ubiquitin carboxyl-term 66.4 7 0.00024 26.6 3.9 54 48-101 58-119 (130)
54 2kd0_A LRR repeats and ubiquit 66.2 5.1 0.00018 24.6 3.0 56 50-110 26-82 (85)
55 2kan_A Uncharacterized protein 66.0 9.8 0.00033 23.9 4.4 73 27-111 13-87 (94)
56 1ttn_A DC-UBP, dendritic cell- 65.9 16 0.00053 23.3 5.4 59 49-112 37-96 (106)
57 3m63_B Ubiquitin domain-contai 64.7 4.2 0.00014 26.0 2.4 66 22-95 21-86 (101)
58 2wyq_A HHR23A, UV excision rep 63.6 20 0.0007 21.2 6.7 77 27-114 3-83 (85)
59 1wju_A NEDD8 ultimate buster-1 63.1 13 0.00044 24.2 4.6 46 48-94 32-77 (100)
60 1v5t_A 8430435I17RIK protein; 62.9 15 0.00052 22.6 4.8 59 51-113 23-84 (90)
61 2ojr_A Ubiquitin; lanthide-bin 62.6 9.4 0.00032 24.5 3.9 58 49-111 49-107 (111)
62 2lxa_A Ubiquitin-like protein 62.4 18 0.00061 22.6 5.1 43 52-95 20-63 (87)
63 1x1m_A Ubiquitin-like protein 62.1 24 0.00081 22.4 5.8 54 55-112 44-100 (107)
64 1wgd_A Homocysteine-responsive 61.5 16 0.00054 22.5 4.7 75 28-110 6-84 (93)
65 1yfb_A Transition state regula 61.2 7.3 0.00025 23.0 2.8 21 63-83 28-48 (59)
66 3vdz_A Ubiquitin-40S ribosomal 60.7 8.6 0.00029 24.8 3.4 57 49-110 49-106 (111)
67 2klc_A Ubiquilin-1; ubiquitin- 60.0 7.9 0.00027 24.6 3.1 74 27-112 23-97 (101)
68 2io0_B Small ubiquitin-related 59.4 14 0.00049 23.3 4.2 48 47-95 17-64 (91)
69 3b08_A Polyubiquitin-C, ubiqui 59.2 22 0.00074 23.3 5.3 58 49-111 90-148 (152)
70 1mvf_D MAZE protein, PEMI-like 58.8 5.5 0.00019 24.5 2.1 39 63-101 19-64 (82)
71 3rt3_B Ubiquitin-like protein 58.5 11 0.00039 25.3 3.9 58 50-111 17-76 (159)
72 3m62_B UV excision repair prot 57.9 5.8 0.0002 25.5 2.2 59 50-112 16-74 (106)
73 2e5i_A Heterogeneous nuclear r 57.0 10 0.00035 25.3 3.3 41 72-112 21-71 (124)
74 2io1_B Small ubiquitin-related 56.9 14 0.00046 23.5 3.8 61 28-95 6-66 (94)
75 2l66_A SSO7C4, transcriptional 56.7 10 0.00034 21.5 2.9 21 63-83 18-38 (53)
76 3b1l_X E3 ubiquitin-protein li 61.4 2.3 7.9E-05 25.1 0.0 45 50-95 15-59 (76)
77 1v5o_A 1700011N24RIK protein; 55.4 11 0.00039 23.7 3.3 56 50-110 26-83 (102)
78 1j8c_A Ubiquitin-like protein 54.8 12 0.00042 24.8 3.5 58 49-111 45-103 (125)
79 3b08_A Polyubiquitin-C, ubiqui 52.6 10 0.00035 24.9 2.8 58 49-111 14-72 (152)
80 2kc2_A Talin-1, F1; FERM, adhe 52.0 25 0.00086 23.9 4.7 40 42-82 18-57 (128)
81 2d07_B Ubiquitin-like protein 51.9 20 0.00068 22.5 4.0 61 27-94 15-75 (93)
82 2kdi_A Ubiquitin, vacuolar pro 51.8 11 0.00038 24.5 2.8 57 50-111 24-81 (114)
83 1wxv_A BAG-family molecular ch 51.2 23 0.00077 21.6 4.1 72 28-111 6-84 (92)
84 2dzm_A FAS-associated factor 1 51.2 23 0.00079 22.8 4.3 45 50-95 23-68 (100)
85 2fnj_B Transcription elongatio 49.8 25 0.00086 23.5 4.4 63 51-116 17-85 (118)
86 1x5p_A Negative elongation fac 49.7 19 0.00065 21.8 3.6 34 79-113 18-59 (97)
87 1v86_A DNA segment, CHR 7, way 49.6 11 0.00039 23.5 2.5 45 49-95 30-74 (95)
88 3zzy_A Polypyrimidine tract-bi 49.5 15 0.0005 24.9 3.2 33 69-101 21-54 (130)
89 1uel_A HHR23B, UV excision rep 49.1 18 0.0006 22.4 3.4 59 49-112 14-76 (95)
90 2diu_A KIAA0430 protein; struc 48.8 24 0.00082 22.9 4.0 43 71-114 5-57 (96)
91 2i1s_A Hypothetical protein; m 47.9 38 0.0013 23.8 5.4 29 47-75 23-51 (188)
92 2kjr_A CG11242; UBL, ubiquitin 46.7 52 0.0018 20.7 7.6 64 27-94 13-81 (95)
93 3gs2_A E3 ubiquitin-protein li 46.2 64 0.0022 21.5 7.1 83 30-112 4-109 (111)
94 3nyi_A FAT acid-binding protei 45.8 60 0.002 24.5 6.5 60 45-113 34-95 (297)
95 1wz0_A Ubiquitin-like protein 45.8 28 0.00095 22.5 4.0 48 47-95 36-83 (104)
96 2l32_A Small archaeal modifier 45.2 22 0.00076 21.5 3.3 36 50-90 15-50 (74)
97 2kj6_A Tubulin folding cofacto 44.7 57 0.002 20.6 7.9 51 28-82 13-63 (97)
98 3rt3_B Ubiquitin-like protein 44.6 25 0.00086 23.5 3.8 58 49-111 95-153 (159)
99 2eke_C Ubiquitin-like protein 44.6 27 0.00092 22.8 3.8 48 47-95 42-89 (106)
100 2kdb_A Homocysteine-responsive 44.2 19 0.00065 23.0 3.0 67 27-97 21-88 (99)
101 1v6e_A Cytoskeleton-associated 44.2 54 0.0018 20.2 5.7 47 28-79 6-53 (95)
102 1wf9_A NPL4 family protein; be 44.2 6.2 0.00021 25.4 0.6 59 50-114 21-97 (107)
103 1pqs_A Cell division control p 44.2 15 0.00053 22.8 2.4 23 50-72 6-28 (77)
104 1sjr_A Polypyrimidine tract-bi 44.2 38 0.0013 23.8 4.8 42 72-113 42-94 (164)
105 3u5e_m 60S ribosomal protein L 43.9 4.8 0.00016 26.7 0.0 45 50-95 15-59 (128)
106 2bz2_A Negative elongation fac 43.8 21 0.0007 23.1 3.2 35 78-113 41-83 (121)
107 1vd2_A Protein kinase C, IOTA 43.7 60 0.0021 20.6 7.5 61 48-108 18-86 (89)
108 3fdj_A DEGV family protein; GU 42.7 67 0.0023 24.0 6.3 55 46-113 32-86 (278)
109 1q1o_A Cell division control p 42.2 10 0.00036 24.8 1.5 26 47-72 24-49 (98)
110 3d2w_A TAR DNA-binding protein 42.1 31 0.0011 20.8 3.6 36 79-114 14-59 (89)
111 1wjn_A Tubulin-folding protein 42.0 37 0.0013 21.0 4.1 32 50-81 27-59 (97)
112 3beg_B Splicing factor, argini 40.3 40 0.0014 21.2 4.1 36 79-114 19-62 (115)
113 3u30_A Ubiquitin, linear DI-ub 40.1 27 0.00092 23.8 3.5 58 49-111 34-92 (172)
114 4b6w_A Tubulin-specific chaper 40.1 25 0.00086 21.7 3.0 32 50-81 19-50 (86)
115 1x4c_A Splicing factor, argini 39.5 41 0.0014 20.7 4.0 35 79-113 18-60 (108)
116 4efo_A Serine/threonine-protei 38.9 51 0.0017 21.2 4.4 37 47-83 25-61 (94)
117 3u5c_f 40S ribosomal protein S 38.2 6.7 0.00023 27.3 0.0 45 50-95 15-59 (152)
118 3l0w_B Monoubiquitinated proli 38.2 35 0.0012 23.7 3.8 58 49-111 14-72 (169)
119 2daf_A FLJ35834 protein; hypot 36.6 39 0.0013 22.8 3.6 55 50-109 31-86 (118)
120 2cqh_A IGF-II mRNA-binding pro 35.1 29 0.001 20.6 2.7 16 52-67 16-31 (93)
121 2ylm_A Ubiquitin carboxyl-term 34.6 37 0.0013 28.0 3.9 59 50-110 151-216 (530)
122 2pjh_A Protein NPL4, nuclear p 34.6 23 0.00078 21.7 2.1 29 51-79 19-48 (80)
123 4a3p_A Ubiquitin carboxyl-term 34.4 1.2E+02 0.0042 21.6 6.4 60 49-111 143-208 (217)
124 2ylm_A Ubiquitin carboxyl-term 33.9 16 0.00054 30.2 1.6 51 47-97 353-410 (530)
125 3q3f_A Ribonuclease/ubiquitin 33.6 35 0.0012 24.5 3.2 57 49-110 119-176 (189)
126 2kzr_A Ubiquitin thioesterase 32.9 39 0.0013 20.4 3.0 57 52-112 17-78 (86)
127 4a20_A Ubiquitin-like protein 31.6 29 0.001 22.1 2.3 55 52-111 38-95 (98)
128 4ajy_B Transcription elongatio 31.5 36 0.0012 22.8 2.8 60 52-116 18-85 (118)
129 1wf0_A TDP-43, TAR DNA-binding 30.1 27 0.00092 20.6 1.9 25 89-113 19-52 (88)
130 3tix_A Ubiquitin-like protein 30.0 29 0.00098 25.7 2.3 51 28-85 56-106 (207)
131 2w1t_A Spovt, stage V sporulat 29.8 40 0.0014 24.2 3.0 20 63-82 20-39 (178)
132 2div_A TRNA selenocysteine ass 29.6 60 0.0021 19.3 3.5 9 104-112 53-61 (99)
133 1ryj_A Unknown; beta/alpha pro 29.3 41 0.0014 19.7 2.6 36 50-90 18-53 (70)
134 3s5o_A 4-hydroxy-2-oxoglutarat 29.3 48 0.0016 25.1 3.5 30 9-38 63-92 (307)
135 3kyd_D Small ubiquitin-related 28.9 82 0.0028 20.8 4.3 53 27-85 38-90 (115)
136 1v2y_A 3300001G02RIK protein; 28.6 20 0.00067 23.4 1.1 60 50-113 22-97 (105)
137 3eb2_A Putative dihydrodipicol 28.4 35 0.0012 25.7 2.7 100 9-113 53-168 (300)
138 3l21_A DHDPS, dihydrodipicolin 28.2 40 0.0014 25.5 2.9 99 10-113 65-179 (304)
139 2cq4_A RNA binding motif prote 28.1 82 0.0028 19.3 4.1 11 103-113 67-77 (114)
140 2l76_A Nfatc2-interacting prot 27.6 80 0.0027 20.4 3.9 48 47-95 32-79 (95)
141 2e5j_A Methenyltetrahydrofolat 27.5 79 0.0027 18.8 3.8 17 52-68 27-43 (97)
142 2yxg_A DHDPS, dihydrodipicolin 27.3 43 0.0015 25.0 2.9 98 9-113 49-165 (289)
143 2i2y_A Fusion protein consists 27.3 88 0.003 20.2 4.3 37 78-114 75-121 (150)
144 3h5d_A DHDPS, dihydrodipicolin 27.3 57 0.0019 24.8 3.7 99 9-112 56-171 (311)
145 1vjk_A Molybdopterin convertin 27.3 36 0.0012 21.3 2.1 42 49-90 30-81 (98)
146 3a5f_A Dihydrodipicolinate syn 27.1 45 0.0015 25.0 3.0 30 9-38 50-79 (291)
147 1t0y_A Tubulin folding cofacto 26.9 1.3E+02 0.0044 19.4 6.9 49 28-81 5-53 (122)
148 3e96_A Dihydrodipicolinate syn 26.9 44 0.0015 25.4 2.9 29 9-37 61-89 (316)
149 3flu_A DHDPS, dihydrodipicolin 26.7 45 0.0016 25.0 3.0 30 9-38 56-85 (297)
150 3fkr_A L-2-keto-3-deoxyarabona 26.7 45 0.0015 25.3 3.0 30 9-38 57-86 (309)
151 3cpr_A Dihydrodipicolinate syn 26.7 44 0.0015 25.2 2.9 30 10-39 66-95 (304)
152 2ehh_A DHDPS, dihydrodipicolin 26.7 45 0.0015 25.0 2.9 31 9-39 49-79 (294)
153 3b4u_A Dihydrodipicolinate syn 26.6 59 0.002 24.3 3.6 30 9-38 52-81 (294)
154 3qze_A DHDPS, dihydrodipicolin 26.6 45 0.0016 25.4 3.0 29 10-38 73-101 (314)
155 3tak_A DHDPS, dihydrodipicolin 26.5 46 0.0016 24.9 3.0 30 9-38 50-79 (291)
156 2ojp_A DHDPS, dihydrodipicolin 26.3 47 0.0016 24.9 3.0 30 9-38 50-79 (292)
157 1f6k_A N-acetylneuraminate lya 26.2 46 0.0016 24.9 2.9 30 9-38 53-82 (293)
158 2wkj_A N-acetylneuraminate lya 25.9 46 0.0016 25.1 2.9 30 9-38 60-89 (303)
159 3daq_A DHDPS, dihydrodipicolin 25.9 48 0.0016 24.8 3.0 29 10-38 52-80 (292)
160 2al3_A TUG long isoform; TUG U 25.8 79 0.0027 20.2 3.6 40 43-83 17-56 (90)
161 1iqt_A AUF1, heterogeneous nuc 25.7 90 0.0031 17.3 3.6 12 103-114 41-52 (75)
162 3na8_A Putative dihydrodipicol 25.7 42 0.0014 25.6 2.7 97 10-113 74-189 (315)
163 3d0c_A Dihydrodipicolinate syn 25.5 48 0.0016 25.2 2.9 30 9-38 61-90 (314)
164 2rdm_A Response regulator rece 25.4 62 0.0021 19.5 3.1 54 17-72 68-124 (132)
165 1xky_A Dihydrodipicolinate syn 25.1 51 0.0017 24.9 3.0 30 9-38 61-90 (301)
166 3rpf_C Molybdopterin convertin 25.0 28 0.00097 20.6 1.3 38 54-91 19-58 (74)
167 3tuo_A DNA-binding protein SAT 25.0 1.4E+02 0.0046 19.7 4.6 69 28-98 6-93 (105)
168 2rfg_A Dihydrodipicolinate syn 24.9 45 0.0015 25.1 2.7 30 9-38 49-78 (297)
169 2hvz_A Splicing factor, argini 24.7 88 0.003 18.6 3.6 17 52-68 8-24 (101)
170 1o5k_A DHDPS, dihydrodipicolin 24.7 52 0.0018 24.9 3.0 101 9-113 61-177 (306)
171 2wbr_A GW182, gawky, LD47780P; 24.6 1.2E+02 0.0042 19.1 4.3 38 76-113 7-53 (89)
172 1pzx_A Hypothetical protein AP 24.6 89 0.003 23.4 4.3 57 46-113 35-92 (289)
173 3ai5_A Yeast enhanced green fl 24.6 98 0.0034 23.8 4.6 56 49-109 247-303 (307)
174 3m5v_A DHDPS, dihydrodipicolin 24.6 51 0.0018 24.8 2.9 30 9-38 56-86 (301)
175 2r8w_A AGR_C_1641P; APC7498, d 24.5 51 0.0017 25.3 2.9 29 10-38 84-112 (332)
176 3si9_A DHDPS, dihydrodipicolin 24.2 47 0.0016 25.4 2.7 97 10-113 72-187 (315)
177 3qfe_A Putative dihydrodipicol 24.1 54 0.0018 25.0 3.0 100 10-113 61-179 (318)
178 2vc6_A MOSA, dihydrodipicolina 24.1 48 0.0016 24.8 2.7 30 9-38 49-78 (292)
179 3dz1_A Dihydrodipicolinate syn 23.8 68 0.0023 24.3 3.5 96 9-110 57-170 (313)
180 4dpp_A DHDPS 2, dihydrodipicol 23.5 53 0.0018 25.9 2.9 97 9-112 108-220 (360)
181 1fm0_D Molybdopterin convertin 22.9 37 0.0013 20.0 1.5 36 53-89 23-63 (81)
182 3po0_A Small archaeal modifier 22.7 34 0.0012 20.7 1.3 41 49-89 21-71 (89)
183 2v9d_A YAGE; dihydrodipicolini 22.7 59 0.002 25.1 3.0 101 9-113 80-196 (343)
184 1ug8_A Poly(A)-specific ribonu 22.2 62 0.0021 20.6 2.5 21 11-32 39-59 (87)
185 2xnq_A Nuclear polyadenylated 22.1 1E+02 0.0035 18.5 3.6 25 89-113 37-67 (97)
186 3cmm_A Ubiquitin-activating en 21.8 97 0.0033 27.8 4.5 50 49-100 921-981 (1015)
187 1s79_A Lupus LA protein; RRM, 21.6 1E+02 0.0035 19.0 3.5 36 79-114 14-63 (103)
188 2jvr_A Nucleolar protein 3; RN 21.5 1.6E+02 0.0054 18.6 4.5 42 73-114 25-78 (111)
189 2kvi_A Nuclear polyadenylated 21.5 1.1E+02 0.0038 18.1 3.6 26 88-113 24-55 (96)
190 2dt8_A DEGV family protein; fa 21.3 1.3E+02 0.0045 22.3 4.6 58 46-113 33-91 (280)
191 2dnf_A Doublecortin domain-con 21.0 1.7E+02 0.006 18.8 5.2 76 26-113 9-89 (108)
192 2lna_A AFG3-like protein 2; st 20.8 85 0.0029 20.0 3.0 29 8-36 66-95 (99)
193 2cpe_A RNA-binding protein EWS 20.8 98 0.0033 18.8 3.3 12 103-114 65-76 (113)
194 1why_A Hypothetical protein ri 20.7 95 0.0033 18.4 3.2 15 52-66 25-39 (97)
195 2krc_A DNA-directed RNA polyme 20.5 77 0.0026 20.5 2.8 48 54-117 28-76 (99)
196 2dis_A Unnamed protein product 20.5 1.3E+02 0.0046 18.0 3.9 11 103-113 52-62 (109)
197 3jyu_A Ubiquitin carboxyl-term 20.2 1.7E+02 0.0057 21.2 4.9 59 50-111 156-220 (231)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=9.4e-56 Score=309.30 Aligned_cols=116 Identities=75% Similarity=1.181 Sum_probs=112.3
Q ss_pred CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514 2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (117)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V 81 (117)
|+++||++||||+|++|+++||+|||+|||||||+++++++|+|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 999999999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=1.5e-55 Score=310.79 Aligned_cols=116 Identities=60% Similarity=1.043 Sum_probs=114.0
Q ss_pred CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514 2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (117)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V 81 (117)
|+++||++||||+|++|+++||+|||+|||||||+++++++|+|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 89 nn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG 124 (125)
T 3m95_A 89 NNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124 (125)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC-
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEecCccccC
Confidence 999999999999999999999999999999999999
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=1.4e-54 Score=303.73 Aligned_cols=114 Identities=54% Similarity=0.976 Sum_probs=111.1
Q ss_pred ccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033514 4 SNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 4 ~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~ 83 (117)
++||++||||+|++|+++||+|||+|||||||+++++++|+|+++|||||+++||+||+.+||++|+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 84 ~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
++|++|++||+||++|||+||||||+||+++|||
T Consensus 86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 9999999999999999999999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=8.1e-53 Score=293.95 Aligned_cols=116 Identities=59% Similarity=1.018 Sum_probs=114.2
Q ss_pred CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514 2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (117)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V 81 (117)
|+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|++++||||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 81 n~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG 116 (117)
T 1eo6_A 81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116 (117)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC
T ss_pred CCEecCccchHHHHHHHhCCCCCEEEEEEeCCccCC
Confidence 999999999999999999999999999999999999
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=8.7e-53 Score=298.49 Aligned_cols=115 Identities=37% Similarity=0.773 Sum_probs=113.0
Q ss_pred CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCC-CCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEE-
Q 033514 2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSD-IPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI- 79 (117)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~-~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl- 79 (117)
|+ +||++||||+|++|+++||+|||+|||||||++++++ +|.|+++||+||+++||++|+.+||++|+|++++||||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 45 8999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514 80 FVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117 (117)
Q Consensus 80 ~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG 117 (117)
||||++|++|++||+||++|||+||||||+||+++|||
T Consensus 88 ~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG 125 (130)
T 2zjd_A 88 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125 (130)
T ss_dssp ETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHH
T ss_pred EECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccC
Confidence 99999999999999999999999999999999999998
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=2.6e-48 Score=268.50 Aligned_cols=110 Identities=56% Similarity=1.028 Sum_probs=107.5
Q ss_pred CccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc
Q 033514 3 KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 82 (117)
Q Consensus 3 ~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn 82 (117)
+++||++||||+|++|+++||++||++||||||++.++++|.|+++||+||.++||++|+.+||++|++++++|||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 83 NVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 83 ~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
|++|++|++||+||++|+|+||||||+||+
T Consensus 81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 999999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=9.9e-36 Score=199.58 Aligned_cols=85 Identities=26% Similarity=0.461 Sum_probs=80.0
Q ss_pred EEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCeEEEEe
Q 033514 32 VIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLYVTY 110 (117)
Q Consensus 32 VIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGfLyv~Y 110 (117)
|+|.-.+.+++|+|+++||+||+++||++|+.+||+||++++++||||||||++ |++|++||+||++|| +||||||+|
T Consensus 6 v~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~Y 84 (91)
T 4gdk_A 6 IDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLHY 84 (91)
T ss_dssp EEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEEE
T ss_pred EEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEEE
Confidence 555555568999999999999999999999999999999999999999999975 899999999999999 899999999
Q ss_pred cCcccCC
Q 033514 111 SGENTFG 117 (117)
Q Consensus 111 s~~~~fG 117 (117)
|+++|||
T Consensus 85 s~~~afG 91 (91)
T 4gdk_A 85 CKSQAWG 91 (91)
T ss_dssp ESSCCCC
T ss_pred eCccccC
Confidence 9999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=3.5e-35 Score=198.61 Aligned_cols=85 Identities=19% Similarity=0.414 Sum_probs=80.5
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC-CCCCccchHHHHHhHcCCCCCe
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDEDGF 105 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~-~~p~~~~~l~~lY~~~kd~DGf 105 (117)
|+||+|++++. +++|.|+++||+||+++||++|+.+||+||+++ +||||||| .+|++|++||+||++||| |||
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 78999999888 779999999999999999999999999999998 99999999 679999999999999999 999
Q ss_pred EEEEecCcccCC
Q 033514 106 LYVTYSGENTFG 117 (117)
Q Consensus 106 Lyv~Ys~~~~fG 117 (117)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=9.6e-34 Score=189.93 Aligned_cols=85 Identities=14% Similarity=0.377 Sum_probs=67.0
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCe
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGF 105 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGf 105 (117)
|.||-|-.. +.+++|+|+++||+||+++||++|+.+||+||++ ++|||||||++ |++|++||+||++|| +|||
T Consensus 6 ~~Kv~vrfk--~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 6 IQKIQIKFQ--PIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp CCEEEEEEE--ECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCeEEEEEE--ecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 355555444 4489999999999999999999999999999999 69999999965 999999999999999 6999
Q ss_pred EEEEecCcccCC
Q 033514 106 LYVTYSGENTFG 117 (117)
Q Consensus 106 Lyv~Ys~~~~fG 117 (117)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=96.16 E-value=0.0073 Score=47.29 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCccceEEecC---CCchHHHHHHHHHhhC-CCCCceEEEEEcCC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAERS-DIPTIDKKKYLVPA---DLTVGQFVYVIRKRIK-LSAEKAIFIFVDNV 84 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~-~~p~l~k~Kflvp~---~~tv~~~~~~lrk~L~-l~~~~slfl~Vn~~ 84 (117)
+.|++=..-..++....+.+|||.|-..... ..+.++ -.++. ..|++++..- +..+. +-+..+..+.+.+.
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 4455544455566656678999998765332 122221 11121 2267665410 22222 22344468889998
Q ss_pred CCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 85 LPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 85 ~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
-++.++.|..||++++-.||||||.-.
T Consensus 259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 259 EIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 888999999999999999999999865
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=95.80 E-value=0.024 Score=43.97 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHHHhhCC-----CcccEEEEccCCCCCCCCccceEEe---cCCCchHHHHHHHHHhh-CCC-CCceEEE
Q 033514 10 HEFEKRRAEAERIREKYP-----DRIPVIVEKAERSDIPTIDKKKYLV---PADLTVGQFVYVIRKRI-KLS-AEKAIFI 79 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p-----~~ipVIve~~~~~~~p~l~k~Kflv---p~~~tv~~~~~~lrk~L-~l~-~~~slfl 79 (117)
|.|++=..-..++....+ .+|||.|-... ++-|.++..-=-+ ....|++++...+=-.+ .-+ ......+
T Consensus 160 ~d~~~F~~in~kL~~~~~~~~~~r~IPvRiY~~~-~~~~~iQ~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~~~~v 238 (275)
T 4gdk_B 160 DRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTT-TERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQV 238 (275)
T ss_dssp TCHHHHHHHHTGGGCCCTTSSSCSSCCEEEECTT-SSSSEECCCCCSBCTTSCBCBHHHHHHHHCGGGCC------CEEE
T ss_pred CCHHHHHHHHHhhcCCCCccCccccceEEEEecC-CCCCccccCcCCcCCCCCcccHHHHHHHhcccccCCCcccccceE
Confidence 344433333344444333 67999996431 2222222100000 12357777655431111 101 1234567
Q ss_pred EEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 80 FVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 80 ~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
++.+.-++.++.|.+||+++.-.||||||.-.-
T Consensus 239 iihGI~~pl~~pl~~l~~~l~y~DgFLhI~v~~ 271 (275)
T 4gdk_B 239 MIHGIEPMLETPLQWLSEHLSYPDNFLHISIIP 271 (275)
T ss_dssp EBTTBCCCTTSBHHHHHHHSCCTTSCEEEEEEE
T ss_pred EEeCCcCCCCCCHHHHHHhccCCCceEEEEEEe
Confidence 778877999999999999999999999997653
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=95.57 E-value=0.0097 Score=46.11 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=48.1
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEec---CCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC
Q 033514 26 YPDRIPVIVEKAERSDIPTIDKKKYLVP---ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE 102 (117)
Q Consensus 26 ~p~~ipVIve~~~~~~~p~l~k~Kflvp---~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~ 102 (117)
-...|||.|-... + |.++ -+|+ ...|++++.. ..+..- .....+++.+.-++.++.|.+||+++.-.
T Consensus 196 ~~r~IPiRIy~~~-~--~~iQ---~~i~~~~~~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~ 265 (274)
T 3vqi_A 196 KAKSLPVRVWTSN-Y--AVLQ---PTVPVTDKELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASI 265 (274)
T ss_dssp GCSBCCEEEECTT-S--CEEC---CCCBCC---CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred cccceeEEEEcCC-C--CeEe---cccCCCCccccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence 4578999986532 2 2211 1233 3667777654 334211 12345777887789999999999999999
Q ss_pred CCeEEEE
Q 033514 103 DGFLYVT 109 (117)
Q Consensus 103 DGfLyv~ 109 (117)
||||||.
T Consensus 266 DgFLhiv 272 (274)
T 3vqi_A 266 DGFLYLV 272 (274)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999986
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.84 E-value=0.088 Score=33.90 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=35.4
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~ 85 (117)
.-+|.|+.+.+|.+++..-|++-+++++.++.|..++.-
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdR 59 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEW 59 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEE
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcc
Confidence 448999999999999999999999999999999998743
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=85.68 E-value=1.8 Score=25.88 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=42.4
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEec
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS 111 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys 111 (117)
..+-|..+.||+++...+..+.++++++--++| ++.....+.+++++ .-+ +..|++...
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~----~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKEL----GMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHH----TCCTTEEEEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHc----CCCCCCEEEEEEe
Confidence 356799999999999999999999987655544 56555667788774 222 336666543
No 15
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=85.25 E-value=2.5 Score=25.96 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=38.0
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
..|.|..+.+++.++....++.++++++--|+| ++.-...+.|.+++
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 468999999999999999999999988666666 55444556778776
No 16
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.46 E-value=3 Score=26.65 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=44.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEc---CC-CCCccchHHHHHhHcCCCCCeEEEE
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NV-LPPTGAIMSTIYDEKKDEDGFLYVT 109 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn---~~-~p~~~~~l~~lY~~~kd~DGfLyv~ 109 (117)
.-||.+.+++++...|+++|++.+++...-|=. +. .+..|+.|...++.=+ +|-|-+.
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL~ 79 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTLW 79 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEEE
Confidence 358999999999999999999987665555554 22 3688889999998865 4455543
No 17
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=83.51 E-value=6.3 Score=26.05 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=45.0
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
+++|-|.|.-.. + ....|.|..+.+++.++....++.++++.+--|+| ++.-...+.|..++
T Consensus 24 ~~~I~IkVk~~~-g-----~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNAD-G-----AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETT-S-----CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred CCeEEEEEECCC-C-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 355666664321 2 23478999999999999999999999988666666 44444556788887
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.30 E-value=6.2 Score=23.80 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=49.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCe
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGF 105 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGf 105 (117)
|..+-|.|.... + +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .-. +..
T Consensus 5 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~----~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPD-G-----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIY----GIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHH----TCCTTEE
T ss_pred CCCEEEEEEcCC-C-----CEEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHC----CCCCCCE
Confidence 455667775432 1 1224568999999999999999999987754 344566655667788765 232 346
Q ss_pred EEEEec
Q 033514 106 LYVTYS 111 (117)
Q Consensus 106 Lyv~Ys 111 (117)
|++...
T Consensus 74 i~l~~~ 79 (87)
T 1wh3_A 74 LILSKK 79 (87)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 777654
No 19
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.08 E-value=3.2 Score=25.32 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=40.3
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 52 vp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- ++..|+|...
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L~d~~tL~~~----~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQR-LFYRGKQLENGYTLFDY----DVGLNDIIQLLVR 81 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEECCSSSBHHHH----TCCTTCEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeECCCCCCHHHC----CCCCCCEEEEEEe
Confidence 89999999999999999999877543 44466655667788765 22 2447777654
No 20
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=80.06 E-value=2 Score=25.78 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=41.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .- ++..|+|...
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~----~i~~~~~l~l~~r 75 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKWSTLFLLLR 75 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG----TCCTTCEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEEE
Confidence 4578999999999999999999987654 444577666666777653 22 3456776643
No 21
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=79.66 E-value=10 Score=24.57 Aligned_cols=85 Identities=8% Similarity=0.137 Sum_probs=55.3
Q ss_pred HHhhCCCcccEEEEccCCCCCCC--Cccc--eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHh
Q 033514 22 IREKYPDRIPVIVEKAERSDIPT--IDKK--KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYD 97 (117)
Q Consensus 22 i~~k~p~~ipVIve~~~~~~~p~--l~k~--Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~ 97 (117)
..+.+|..|.|.|.......-|. |..+ .+-|+.+.||+++...|....++++++-- |+.++.....+.+|++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK-LQYEGIFIKDSNSLAYY-- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEE-EEETTEEECTTSBHHHH--
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEE-EEECCEECCCCCCHHHC--
Confidence 56678999999886542111010 3322 35689999999999999999999876543 34466555666778764
Q ss_pred HcCCC-CCeEEEEec
Q 033514 98 EKKDE-DGFLYVTYS 111 (117)
Q Consensus 98 ~~kd~-DGfLyv~Ys 111 (117)
.-. +..|+|...
T Consensus 95 --~i~~g~~i~lv~r 107 (115)
T 1we7_A 95 --NMASGAVIHLALK 107 (115)
T ss_dssp --TCCSSCEEEEEEC
T ss_pred --CCCCCCEEEEEEE
Confidence 232 446776654
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=79.64 E-value=3.5 Score=25.39 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=42.6
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 4568999999999999999999987765444 4665556677887752 22 24478877653
No 23
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=79.36 E-value=4.1 Score=25.73 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=50.5
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCe
Q 033514 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGF 105 (117)
Q Consensus 26 ~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGf 105 (117)
-+..+-|.|.-.. ++ ...+-|..+.||+++...|..+.++++++--++| ++.....+.+++++- -+ ++..
T Consensus 18 ~~~~m~I~Vk~~~-g~-----~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~ 87 (97)
T 1wyw_B 18 EGEYIKLKVIGQD-SS-----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDV 87 (97)
T ss_dssp -CCEEEEEEECTT-CC-----EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCE
T ss_pred CCCcEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCE
Confidence 3456777775432 22 2357799999999999999999999987655554 555556677887742 11 2446
Q ss_pred EEEEec
Q 033514 106 LYVTYS 111 (117)
Q Consensus 106 Lyv~Ys 111 (117)
|++...
T Consensus 88 I~l~~~ 93 (97)
T 1wyw_B 88 IEVYQE 93 (97)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 777654
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=78.67 E-value=2.4 Score=24.69 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=40.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .-. +..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHe-EEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568999999999999999999987654 445566554556666543 332 446776543
No 25
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=78.57 E-value=8 Score=24.85 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=53.1
Q ss_pred HHHhhCCCcccEEEEccC--CCCCCCCccceEEecC-CCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHh
Q 033514 21 RIREKYPDRIPVIVEKAE--RSDIPTIDKKKYLVPA-DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYD 97 (117)
Q Consensus 21 ~i~~k~p~~ipVIve~~~--~~~~p~l~k~Kflvp~-~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~ 97 (117)
....++|.-|.|.|.... .++ ...+-|+. +.||+++...|....++++++-- |+.++.....+.+|++.
T Consensus 19 ~~l~~~~~~i~i~Vk~~~~~~g~-----~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-- 90 (111)
T 1we6_A 19 QFLAQHPGPATIRVSKPNENDGQ-----FMEITVQSLSENVGSLKEKIAGEIQIPANKQK-LSGKAGFLKDNMSLAHY-- 90 (111)
T ss_dssp HHHHHCCSCEEEEECCTTCSSSC-----CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE-EECSSSBCCTTSBTTTT--
T ss_pred HHHHhCCCcEEEEEEecccCCCc-----EEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE-EEECCEECCCCCcHHHC--
Confidence 345678888888885431 222 22466897 99999999999999999876543 34466665556666543
Q ss_pred HcCCC-CCeEEEEec
Q 033514 98 EKKDE-DGFLYVTYS 111 (117)
Q Consensus 98 ~~kd~-DGfLyv~Ys 111 (117)
.-. +..|+|...
T Consensus 91 --~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 --NVGAGEILTLSLR 103 (111)
T ss_dssp --TCSSSCEEEEECS
T ss_pred --CCCCCCEEEEEEE
Confidence 232 446776543
No 26
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=78.21 E-value=1.9 Score=25.96 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=41.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- .++..|++...
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~i~l~~r 75 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-HNHSALYLLLK 75 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETBEECCTTCBTTTT--TC-CTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCeECCCCCCHHHC--CC-CCCCEEEEEEe
Confidence 4568999999999999999999988754 444576655666676653 11 13447777653
No 27
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=77.44 E-value=12 Score=24.20 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=50.9
Q ss_pred HHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhH
Q 033514 19 AERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE 98 (117)
Q Consensus 19 ~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~ 98 (117)
+..+-...|.+|-|.|.-.. + ++..+-|.++.||++|...|..+.++++++-.-.| ++.....+.+|+ .
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~~-G-----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----d 79 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDRL-G-----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----D 79 (93)
T ss_dssp ---------CEEEEEEECTT-S-----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----G
T ss_pred cccccCCCCceEEEEEECCC-C-----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----H
Confidence 34445566788888886432 2 23457799999999999999999999987765555 666666667774 4
Q ss_pred cCCCCC-eEEEEe
Q 033514 99 KKDEDG-FLYVTY 110 (117)
Q Consensus 99 ~kd~DG-fLyv~Y 110 (117)
|.-.|| -|.+-|
T Consensus 80 Y~I~dgstLhL~~ 92 (93)
T 3plu_A 80 YEVHDQTNLELYY 92 (93)
T ss_dssp GTCCTTCEEEEEE
T ss_pred cCCCCCCEEEEEe
Confidence 543444 566655
No 28
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.32 E-value=2.4 Score=25.21 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=40.2
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
..+-|.|.... ++ ...+-|+.+.||+++...|.++.+++++.-- |+.++.....+.++++
T Consensus 6 ~~m~i~vk~~~-g~-----~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 6 SGMQLTVKALQ-GR-----ECSLQVPEDELVSTLKQLVSEKLNVPVRQQR-LLFKGKALADGKRLSD 65 (81)
T ss_dssp SSEEEEEEETT-SC-----EEEEEECSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEECCTTSBGGG
T ss_pred CcEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHH
Confidence 44566665322 22 2245689999999999999999999876543 4446655555666655
No 29
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=77.30 E-value=2.9 Score=24.30 Aligned_cols=58 Identities=5% Similarity=-0.019 Sum_probs=40.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .-. +..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998765 4455566555556666543 333 446776653
No 30
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.80 E-value=6.3 Score=25.72 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=42.8
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
.+-|.++.||++|...|..+-++++++-- |..++.....+.+|++ |.-. ++..|.|.|.
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQr-Li~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKIV-LKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCE-EEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEE-EEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 35689999999999999999999877643 4445655566778886 3321 2447888883
No 31
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=75.31 E-value=4.9 Score=25.63 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=49.5
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCe
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGF 105 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGf 105 (117)
+..+-|.|.... + +..+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .-. +..
T Consensus 20 ~~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~y----gI~~gst 87 (100)
T 1yqb_A 20 PHLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQL-VLIFAGKILKDPDSLAQC----GVRDGLT 87 (100)
T ss_dssp TTEEEEEEECSS-C------EEEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBHHHH----TCCTTCE
T ss_pred CCeEEEEEEcCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCcCcHHHC----CCCCCCE
Confidence 345666665432 1 234678999999999999999999987654 444566666667788764 232 446
Q ss_pred EEEEecC
Q 033514 106 LYVTYSG 112 (117)
Q Consensus 106 Lyv~Ys~ 112 (117)
|+|....
T Consensus 88 I~l~~r~ 94 (100)
T 1yqb_A 88 VHLVIKR 94 (100)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 7776543
No 32
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=74.15 E-value=3.6 Score=25.17 Aligned_cols=74 Identities=16% Similarity=0.291 Sum_probs=48.6
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeE
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFL 106 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfL 106 (117)
|..+-|.|.-.. ++ ...+-|+.+.||++|...|..+.++++++--. +.++.....+.+|++. .-++..|
T Consensus 3 ~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL-i~~Gk~L~d~~tL~~~----~i~g~~i 71 (90)
T 4dwf_A 3 PDSLEVLVKTLD-SQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL-IYQGRVLQDDKKLQEY----NVGGKVI 71 (90)
T ss_dssp CCEEEEEEEETT-CC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE-EETTEECCTTSBGGGG----TCTTEEE
T ss_pred CcEEEEEEEcCC-CC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE-EECCeECCCCCCHHHc----CCCCcEE
Confidence 455666664432 22 22456899999999999999999998775444 4466666667777763 2224466
Q ss_pred EEEec
Q 033514 107 YVTYS 111 (117)
Q Consensus 107 yv~Ys 111 (117)
+|...
T Consensus 72 ~l~~~ 76 (90)
T 4dwf_A 72 HLVER 76 (90)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66654
No 33
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=73.65 E-value=3.2 Score=25.08 Aligned_cols=58 Identities=3% Similarity=-0.029 Sum_probs=40.7
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Y 110 (117)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|++. .- .++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i-~~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KI-LGGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG--TC-CTTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc--CC-CCCCEEEEEE
Confidence 4578999999999999999999987654 344476665667777764 11 1344666654
No 34
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=73.09 E-value=8 Score=24.09 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=46.7
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCe
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGF 105 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGf 105 (117)
+..+-|.|.. + +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .-. +..
T Consensus 17 ~~~m~I~Vk~---g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y----~I~~gst 83 (93)
T 2l7r_A 17 RGSMQLFVRA---Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQ-VVLLAGAPLEDEATLGQC----GVEALTT 83 (93)
T ss_dssp ---CEEEEES---S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGC-EEEETTEECCTTSBHHHH----TCCSSCE
T ss_pred CCcEEEEEEC---C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHE-EEEECCEECCCCCcHHHC----CCCCCCE
Confidence 3456677764 2 2234678999999999999999999987654 344566555667788765 222 446
Q ss_pred EEEEe
Q 033514 106 LYVTY 110 (117)
Q Consensus 106 Lyv~Y 110 (117)
|++..
T Consensus 84 I~lv~ 88 (93)
T 2l7r_A 84 LEVAG 88 (93)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66654
No 35
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=72.95 E-value=4.8 Score=23.93 Aligned_cols=57 Identities=7% Similarity=0.009 Sum_probs=41.0
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Y 110 (117)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .- ++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~----~i~~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEY----GLKPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGG----TCCTTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEE
Confidence 4578999999999999999999987754 445566655666777653 22 244677654
No 36
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=71.98 E-value=5.9 Score=24.38 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=39.8
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCC-CCCeEEEEe
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKD-EDGFLYVTY 110 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd-~DGfLyv~Y 110 (117)
+-|+.+.||+++...|..+.++++++- -|+.++.. ...+.+|++. .- ++..|++..
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~lL~D~~tL~~y----~I~~gs~i~lv~ 82 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQ-TLIVDGIVILREDLTVEQC----QIVPTSDIQLEV 82 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCCSSSBHHHH----TCCTTSCEEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHE-EEEECCEEecCCcCCHHHc----CCCCCCEEEEEE
Confidence 468999999999999999999987654 34456654 6677788764 22 234566643
No 37
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=71.87 E-value=9.9 Score=24.61 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=37.5
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
..|.|..+.+++.++..-.++.+++.+.--|+| ++.-..+++|..+|
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 478999999999999999999999988655555 66444556777776
No 38
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=71.64 E-value=3.8 Score=25.33 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=42.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
.+-|+.+.||++|...|..+.+++++.- -|+.++.....+.+|+++ .- ++..|++...
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~----~i~~~~~i~l~~r 73 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 73 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhHE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEE
Confidence 4568999999999999999999987654 455577666666777663 22 2447777654
No 39
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=71.40 E-value=9.8 Score=24.18 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=41.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCC-CeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDED-GFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~D-GfLyv~Ys 111 (117)
.+-|+.+.||++|...|..+.++.+++ .-|+.++.....+.+|+++ .-.| ..|+|...
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC----GVRDGLTVHLVIK 88 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH----TCCTTEEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCEEEEEEc
Confidence 467899999999999999999998765 4445577666667777764 3333 36777654
No 40
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=70.78 E-value=4.9 Score=24.45 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=43.0
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 26 ~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
-|..+.|.|.... ++ ...+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 14 ~~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLD-SQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETT-SC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGG
T ss_pred CCCeEEEEEEcCC-CC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEECCCCCcHHH
Confidence 4566777775432 22 2245689999999999999999999877653 4446666666777765
No 41
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=70.70 E-value=4.6 Score=25.25 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=41.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEecC
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYSG 112 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys~ 112 (117)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.+|++. .- ++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEEeC
Confidence 4568899999999999999999987654 444566554556666653 23 34577776543
No 42
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=70.50 E-value=5.2 Score=23.40 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=39.7
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Y 110 (117)
.+-|+.+.||+++...|....+++++.- -|+.++.....+.++++ |+-. +..|++.-
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~q-rL~~~gk~L~d~~tL~~----~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQ-RLIYSGKILKDDQTVES----YHIQDGHSVHLVK 74 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGG----GTCCTTCEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHE-EEEECCeEcCCCCCHHH----cCCCCCCEEEEEE
Confidence 4578999999999999999999987654 44456655555666654 3332 44666654
No 43
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=70.38 E-value=17 Score=23.85 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=41.9
Q ss_pred ccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 30 IPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 30 ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
+-|.||-...+. ..-.+-|.++.||+++..-|-.+.++++..-= ++.++.+...+.+|++
T Consensus 25 l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 25 LWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 345565543222 23346789999999999999999999986554 4456677666777764
No 44
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=70.26 E-value=5 Score=25.81 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.6
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~V 81 (117)
-.||.+.+++++..-|+.||+++ +.-+|.|-
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~yk 56 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTKL 56 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEec
Confidence 36999999999999999999994 33444443
No 45
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=69.85 E-value=5.1 Score=24.68 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=39.6
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEE
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVT 109 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~ 109 (117)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .-. +..|++.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~ 87 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLV 87 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHHC----CCCCCCEEEEE
Confidence 4568999999999999999999987654 344466666666777653 333 3356654
No 46
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=69.72 E-value=4.3 Score=25.05 Aligned_cols=58 Identities=5% Similarity=0.007 Sum_probs=41.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- ++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~----~i~~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTTTT----TCCTTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEE-EEECCeECCCCCcHHHc----CCCCCCEEEEEEE
Confidence 45688999999999999999999876543 44466666667777763 22 2446776643
No 47
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=68.97 E-value=4.5 Score=23.94 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=38.3
Q ss_pred EE-ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEe
Q 033514 50 YL-VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTY 110 (117)
Q Consensus 50 fl-vp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Y 110 (117)
+- |+.+.||+++...|..+.++++++-- |+.++.....+.++++. .-. +..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qr-L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQR-LFYRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 45 88999999999999999999876543 44466544556666542 232 44666654
No 48
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.87 E-value=7.8 Score=24.00 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=46.1
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCC-eE
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FL 106 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG-fL 106 (117)
..+-|.|... ++ ...+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .-.|| .|
T Consensus 16 ~~m~i~Vk~~--g~-----~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~----gi~~g~~i 83 (96)
T 1wx8_A 16 RIIRVSVKTP--QD-----CHEFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQR----GILDGSTV 83 (96)
T ss_dssp CEEEEEEECS--SS-----EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHHH----TCCTTEEE
T ss_pred CcEEEEEEEC--Ce-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHHC----CCCCCCEE
Confidence 4455666443 21 224568999999999999999999987654333 456555667788763 33344 55
Q ss_pred EEEe
Q 033514 107 YVTY 110 (117)
Q Consensus 107 yv~Y 110 (117)
+|..
T Consensus 84 ~l~~ 87 (96)
T 1wx8_A 84 HVVV 87 (96)
T ss_dssp ECCB
T ss_pred EEEE
Confidence 5543
No 49
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=67.32 E-value=5.1 Score=25.19 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=46.6
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCe
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGF 105 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGf 105 (117)
+..+-|.|.... ++ ...+-|+.+.||++|...|..+.++++++- -|+.++.....+.+|++. .-. +..
T Consensus 20 ~~~m~I~Vk~~~-g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLT-GK-----TITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKEST 88 (98)
T ss_dssp --CCEEEEEETT-CC-----EEEEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGGG----TCCTTEE
T ss_pred CCeEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHHC----CCCCCCE
Confidence 345667675432 22 234568999999999999999999987654 344566655666676653 333 335
Q ss_pred EEEEe
Q 033514 106 LYVTY 110 (117)
Q Consensus 106 Lyv~Y 110 (117)
|++..
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66543
No 50
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=66.84 E-value=5.5 Score=24.53 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=38.8
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Y 110 (117)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .-. +..|++..
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~ 80 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVL 80 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBSGGG----TCCTTCEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEE
Confidence 3568999999999999999999987644 344466554556666543 333 33666654
No 51
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=66.69 E-value=9.9 Score=22.62 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=35.8
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
...|.|..+.+++.++....++.++++++--|+|=+..+ .++.|.++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~ 59 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQ 59 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHH
Confidence 346899999999999999999999998877777754454 33344443
No 52
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=66.44 E-value=23 Score=22.74 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCC
Q 033514 43 PTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKD 101 (117)
Q Consensus 43 p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd 101 (117)
|.+.-+..-||++..+..++.+--...++++..+ -+.-|+-+ -.++++-|++|=+|..
T Consensus 21 pklpfkvlsVPE~~PftAVlkfaaEeF~vp~~Ts-AiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 21 PRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp TTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSE-EEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCCCceEEecCccCchHHHHHHHHHHcCCCccce-EEEecCCcccChhhccchhhhhcCc
Confidence 4555677789999999999999999999998776 44455544 7888999999999965
No 53
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=66.39 E-value=7 Score=26.55 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=39.7
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCC-ceEEEEEc--C-CC----CCccchHHHHHhHcCC
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVD--N-VL----PPTGAIMSTIYDEKKD 101 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~-~slfl~Vn--~-~~----p~~~~~l~~lY~~~kd 101 (117)
.-|.|.+++|+++|...|-+.+|++++ ..|+..+| | +. +.++.+++..+....+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 358999999999999999999999764 66777775 3 32 3445666666665433
No 54
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.22 E-value=5.1 Score=24.65 Aligned_cols=56 Identities=9% Similarity=0.024 Sum_probs=38.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCC-CeEEEEe
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDED-GFLYVTY 110 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~D-GfLyv~Y 110 (117)
.-|+.+.||+++...|....+++++.- =|+.++.....+.+|+++ .-.| ..|+|..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQ-KLIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTC-EEEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 468999999999999999999987643 334566555556666543 3333 3566654
No 55
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=66.04 E-value=9.8 Score=23.86 Aligned_cols=73 Identities=12% Similarity=0.007 Sum_probs=47.8
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCcc-chHHHHHhHcCC-CCC
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSTIYDEKKD-EDG 104 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~-~~l~~lY~~~kd-~DG 104 (117)
+..+.|.|.... + ....-|+.+.||+++...|..+.++++++- -|+.++.....+ .+|++. .- ++.
T Consensus 13 ~~~~~I~Vk~~~-~------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~~tL~~y----gI~~gs 80 (94)
T 2kan_A 13 VRKIHVTVKFPS-K------QFTVEVDRTETVSSLKDKIHIVENTPIKRM-QLYYSGIELADDYRNLNEY----GITEFS 80 (94)
T ss_dssp SCCEEEEEECSS-C------EEEEEECTTCBHHHHHHHHHHHSSSCTTTE-EEEETTEEECCTTSBHHHH----TCCTTE
T ss_pred CCCEEEEEEcCC-c------EEEEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCEECCCCcccHHHC----CCCCCC
Confidence 455667775431 1 234568999999999999999999987654 344566555555 677764 22 244
Q ss_pred eEEEEec
Q 033514 105 FLYVTYS 111 (117)
Q Consensus 105 fLyv~Ys 111 (117)
.|+|...
T Consensus 81 tl~lv~r 87 (94)
T 2kan_A 81 EIVVFLK 87 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 6776654
No 56
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.95 E-value=16 Score=23.26 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=41.8
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEecC
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYSG 112 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys~ 112 (117)
.+-|+.+.||+++...|..+.++.++.--.+ .++.....+.+|++. .- ++..|+|....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEEL----KIPKDYVVQVIVSQ 96 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHC----CCSSSCEEEEECCC
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHc----CCCCCCEEEEEEeC
Confidence 4679999999999999999999987654443 466555666777653 33 24477776643
No 57
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=64.70 E-value=4.2 Score=26.04 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=40.0
Q ss_pred HHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 22 IREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 22 i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
++-+-.-.|-|.|.. .++. ..+-|+.+.||++|...|..+.++++++--.+ .++.....+.+|++.
T Consensus 21 l~l~~~m~i~I~Vk~--~g~~-----~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 21 LYFQGAMSLNIHIKS--GQDK-----WEVNVAPESTVLQFKEAINKANGIPVANQRLI-YSGKILKDDQTVESY 86 (101)
T ss_dssp --------CCEEEEC--SSCC-----CCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ETTEECCTTSBTTTT
T ss_pred ecccCCcEEEEEEEE--CCEE-----EEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE-ECCEECCCcCcHHHC
Confidence 333333456777764 2321 12457899999999999999999987654333 466666666677653
No 58
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=63.63 E-value=20 Score=21.18 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHh---hCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-C
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKR---IKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-E 102 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~---L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~ 102 (117)
|..+-|.|.... ++ ...+-|+.+.||+++...|..+ -++++++- -|+.++.....+.+|++ |.- +
T Consensus 3 ~~~m~i~vk~~~-g~-----~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~----~~i~~ 71 (85)
T 2wyq_A 3 PMAVTITLKTLQ-QQ-----TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQ-KLIYAGKILSDDVPIRD----YRIDE 71 (85)
T ss_dssp -CCEEEEEEETT-SC-----EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGE-EEEETTEECCTTSBGGG----GCCCT
T ss_pred CceEEEEEEECC-CC-----EEEEEECCCCCHHHHHHHHHhhccccCCCHHHe-EEEECCEECcCCCCHHH----cCCCC
Confidence 566777776542 22 2245689999999999999998 46765543 44456665566667665 333 3
Q ss_pred CCeEEEEecCcc
Q 033514 103 DGFLYVTYSGEN 114 (117)
Q Consensus 103 DGfLyv~Ys~~~ 114 (117)
+..|++..+...
T Consensus 72 g~~i~l~~~~~~ 83 (85)
T 2wyq_A 72 KNFVVVMVTKTK 83 (85)
T ss_dssp TSEEEEEEC---
T ss_pred CCEEEEEEcCCC
Confidence 557888766543
No 59
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.12 E-value=13 Score=24.19 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=36.1
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
...-|+.+.||++|...|..+.++++.+- -|..++.....+.+|++
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQ-rLI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYI-KIVINKKQLQLGKTLEE 77 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTC-EEEETTEECCTTSBHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHe-EEEeCCeECCCCCcHHH
Confidence 34558999999999999999999987654 44456766677788876
No 60
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=62.93 E-value=15 Score=22.59 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=39.8
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEE--EcCCCCCccchHHHHHhHcCCC-CCeEEEEecCc
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIF--VDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYSGE 113 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~--Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys~~ 113 (117)
-|+.+.||++|...|..+.++++++--.+. .++.....+.+|+++ +-. +..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~----~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL----KLKPNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH----TCCTTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc----CCCCCCEEEEEecCc
Confidence 468999999999999999999876543330 466555666777763 222 34666655443
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=62.58 E-value=9.4 Score=24.55 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=40.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|++. .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEE-EEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 45689999999999999999999877543 44466554556666543 22 2446766543
No 62
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=62.43 E-value=18 Score=22.58 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=32.2
Q ss_pred ecCCCchHHHHHHH-HHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 52 VPADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 52 vp~~~tv~~~~~~l-rk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
++++.||++|...| ..+-++++++-- |+.++.....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEE-EEETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEE-EEECCEECcCcCCHHHc
Confidence 34899999999999 777788877644 44466666777888854
No 63
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.06 E-value=24 Score=22.45 Aligned_cols=54 Identities=6% Similarity=0.001 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHhh--CCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEecC
Q 033514 55 DLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYSG 112 (117)
Q Consensus 55 ~~tv~~~~~~lrk~L--~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys~ 112 (117)
+.||++|...|..+. ++++++..=|+.++.....+.+|++. .-. +-.|+|.-..
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y----~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY----GIQPGSTVHVLRKS 100 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH----TCCTTCEEEEEESS
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc----CCCCCCEEEEEeCC
Confidence 599999999999999 88877612334456555666788764 333 3356665543
No 64
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.54 E-value=16 Score=22.47 Aligned_cols=75 Identities=8% Similarity=0.145 Sum_probs=46.1
Q ss_pred CcccEEEEccCCCCCCCCccceEE--ecCCCchHHHHHHHHHhh--CCCCCceEEEEEcCCCCCccchHHHHHhHcCCCC
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYL--VPADLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDED 103 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kfl--vp~~~tv~~~~~~lrk~L--~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~D 103 (117)
..+.|.|.... +. ...+- |+.+.||++|...|.... ++++++-- |+.++.....+.+|++....-+ ++
T Consensus 6 ~~m~i~Vk~~~-~~-----~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~Qr-Li~~Gk~L~D~~tL~~~~~~i~-~~ 77 (93)
T 1wgd_A 6 SGVTLLVKSPN-QR-----HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQR-LIYSGKLLLDHQCLRDLLPKQE-KR 77 (93)
T ss_dssp CCCEEEEECSS-SS-----CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCE-EEETTEECCSSSCHHHHSCSSS-CS
T ss_pred cEEEEEEEeCC-CC-----eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeE-EEECCEECcCcCCHHHHhcCCC-CC
Confidence 45667775432 21 11233 559999999999999998 88766443 3446666666778877532122 23
Q ss_pred CeEEEEe
Q 033514 104 GFLYVTY 110 (117)
Q Consensus 104 GfLyv~Y 110 (117)
..|+|..
T Consensus 78 ~~i~lv~ 84 (93)
T 1wgd_A 78 HVLHLVC 84 (93)
T ss_dssp EEEEEEC
T ss_pred CEEEEEe
Confidence 3566654
No 65
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=61.17 E-value=7.3 Score=23.00 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCceEEEEEcC
Q 033514 63 YVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 63 ~~lrk~L~l~~~~slfl~Vn~ 83 (117)
.-+|++|++.+++.|.+.+.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 457999999999999998864
No 66
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=60.69 E-value=8.6 Score=24.84 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=40.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Y 110 (117)
.+-|+.+.||++|...|..+.+++++.- -|+.++.....+.+|+++ .- ++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~----gI~~gs~I~l~~ 106 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTT----TCCTTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEE
Confidence 4568999999999999999999987654 444566655566666653 22 244666654
No 67
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=60.04 E-value=7.9 Score=24.59 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCe
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGF 105 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGf 105 (117)
+..+-|.|... ++ ...+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|++. .-. +..
T Consensus 23 ~~~m~I~Vk~~--g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----gI~~g~~ 90 (101)
T 2klc_A 23 PKIMKVTVKTP--KE-----KEEFAVPENSSVQQFKEEISKRFKSHTDQL-VLIFAGKILKDQDTLSQH----GIHDGLT 90 (101)
T ss_dssp CCCEEEEEECS--SC-----EEEEEECSCCCHHHHHHHHHHHHTCCGGGE-EEEETTEEECTTCCTGGG----TCCTTCE
T ss_pred CCeEEEEEEeC--Cc-----EEEEEECCCCCHHHHHHHHHHHHCcChhhE-EEEECCEECCCcCcHHHc----CCCCCCE
Confidence 56788888654 22 234678999999999999999999987654 344466554556666553 333 446
Q ss_pred EEEEecC
Q 033514 106 LYVTYSG 112 (117)
Q Consensus 106 Lyv~Ys~ 112 (117)
|+|....
T Consensus 91 I~l~~~~ 97 (101)
T 2klc_A 91 VHLVIKT 97 (101)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 7766543
No 68
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=59.43 E-value=14 Score=23.26 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=36.1
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
...|.|.++.+++.++....++.++++++--|+|=+..+ .++.|.+++
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 447899999999999999999999998776666644444 334455443
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=59.22 E-value=22 Score=23.29 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=40.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|.++.+++++.--. +.++.....+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL-~~~g~~L~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEEE-EECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 456889999999999999999998775444 4466544556666543 32 3446777654
No 70
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=58.83 E-value=5.5 Score=24.46 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=19.5
Q ss_pred HHHHHhhCCCCCceEEEEEcC-CC---CCcc---chHHHHHhHcCC
Q 033514 63 YVIRKRIKLSAEKAIFIFVDN-VL---PPTG---AIMSTIYDEKKD 101 (117)
Q Consensus 63 ~~lrk~L~l~~~~slfl~Vn~-~~---p~~~---~~l~~lY~~~kd 101 (117)
.-+|+.|++.+++.+.+.+.+ .+ |... .++.++++.+.+
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~ 64 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP 64 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC-----------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc
Confidence 456899999999999998864 32 5443 478888888853
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=58.46 E-value=11 Score=25.28 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=40.7
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEE-EEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl-~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
+-|+.+.||+++...|....++++++--.+ |-++.....+.+|++. .- ++..|++...
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y----~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ----GLGPGSTVLLVVD 76 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG----TCCTTCEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc----CCCCCCEEEEEcc
Confidence 468899999999999999999998655444 5255555666677653 22 2446666554
No 72
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=57.91 E-value=5.8 Score=25.49 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=41.3
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
+-|+.+.||++|...|..+.++++++- -|+.++.....+.+|+++ .-+ ++..|++..+.
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~ 74 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQI-KLIYSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQ 74 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGC-EEEETTEECCTTSBTTTT--TCC-TTCEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhE-EEEECCEECCCcCCHHHc--CCC-CCCEEEEEEcC
Confidence 458899999999999999999987654 344466666667777763 122 24477776543
No 73
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.96 E-value=10 Score=25.26 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCceEEEEEcC-CCCCccchHHHHHhHcCCC--------CCe-EEEEecC
Q 033514 72 SAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDE--------DGF-LYVTYSG 112 (117)
Q Consensus 72 ~~~~slfl~Vn~-~~p~~~~~l~~lY~~~kd~--------DGf-Lyv~Ys~ 112 (117)
.++..|+|||+| ..+-..+.|.++|..|..- .|| =+|.|.+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~ 71 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFES 71 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESS
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECC
Confidence 467889999998 3456667889999988652 254 5666654
No 74
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=56.93 E-value=14 Score=23.45 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=41.6
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
++|-|.|.-.. + +...|.|..+.+++.++....++.++++++--|+|=+..+ ..+.|.+++
T Consensus 6 ~~i~ikVk~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 66 (94)
T 2io1_B 6 DHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 66 (94)
T ss_dssp CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CeEEEEEECCC-C-----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 45556564321 2 2346889999999999999999999998876666654454 334444443
No 75
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=56.68 E-value=10 Score=21.50 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCceEEEEEcC
Q 033514 63 YVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 63 ~~lrk~L~l~~~~slfl~Vn~ 83 (117)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 457999999999999998864
No 76
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=61.37 E-value=2.3 Score=25.09 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=31.9
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
+-|+.+.||+++...|....++++++--.+ .++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVI-FAGKELPNHLTVQNC 59 (76)
Confidence 457889999999999999999887654333 455444555666553
No 77
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.44 E-value=11 Score=23.75 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=37.6
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCcc-chHHHHHhHcCCC-CCeEEEEe
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSTIYDEKKDE-DGFLYVTY 110 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~-~~l~~lY~~~kd~-DGfLyv~Y 110 (117)
.-|+.+.||++|...|....++++++-- |+.++.....+ .+|++. .-. +..|+|.-
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~y----gI~~g~~l~l~~ 83 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGSY----GLKDGDMVVLLQ 83 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHHH----TCCTTEEEEECB
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHHC----CCCCCCEEEEEE
Confidence 4589999999999999999999876543 34455544444 467654 222 33566654
No 78
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.80 E-value=12 Score=24.79 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=40.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCC-eEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG-fLyv~Ys 111 (117)
.+-|+.+.||++|...|..+.++.+++- -|+.++.....+.+|++ |.-.|| .|+|...
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d----ygI~~gstI~lv~~ 103 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQL-VLIFAGKILKDQDTLIQ----HGIHDGLTVHLVIK 103 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSE-EEEETTEEESTTSCGGG----TTCSSSEEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceE-EEEECCEEcCCCCCHHH----cCCCCCCEEEEEec
Confidence 4568999999999999999999987654 34446655555666655 333344 5666553
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=52.58 E-value=10 Score=24.92 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=38.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys 111 (117)
.+-|+.+.|++++...|..+.+++++.--.+ .++.....+.++++. .-. +..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECCeECcCcccHHHh----ccCCCCeeEEEee
Confidence 4568999999999999999999987754444 455444555666543 222 345666543
No 80
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=51.96 E-value=25 Score=23.93 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=33.0
Q ss_pred CCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc
Q 033514 42 IPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 82 (117)
Q Consensus 42 ~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn 82 (117)
+|+..-....|..+.+|++++..|.+++++...+- |-+|.
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 56777778899999999999999999999986544 55554
No 81
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=51.86 E-value=20 Score=22.52 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=41.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 94 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~ 94 (117)
+++|-|.|.-. .+ ....|.|..+.+++.++....++.++++++--|+|=+..+ ..+.|..+
T Consensus 15 ~~~i~ikV~~~-~g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~d 75 (93)
T 2d07_B 15 NDHINLKVAGQ-DG-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQ 75 (93)
T ss_dssp CCEEEEEEECT-TS-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTT
T ss_pred CCeEEEEEECC-CC-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc-CCCCCHHH
Confidence 45666666432 12 2346899999999999999999999998865566544444 33444443
No 82
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=51.82 E-value=11 Score=24.51 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=39.4
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- ++..|+|...
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y----gI~~gstI~l~~~ 81 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIWAGKQLEDGRTLSDY----NIQRESTLHLVLR 81 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCSSCEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEEE
Confidence 458899999999999999999987654 344566544556666543 23 2446777654
No 83
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.25 E-value=23 Score=21.62 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=43.6
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCC-----CchHHHHHHHHHhhCCCCCceEEEEEcCCCCCc-cchHHHHHhHcCC
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPAD-----LTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT-GAIMSTIYDEKKD 101 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~-----~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~-~~~l~~lY~~~kd 101 (117)
..|-|.|... +. ...+-|+.+ .||++|...|..+.+++++.-- |+.++..... +.+|+++ .-
T Consensus 6 ~~~~v~Vk~~--~~-----~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qr-L~~~Gk~L~D~~~~L~~~----~i 73 (92)
T 1wxv_A 6 SGLTVTVTHS--NE-----KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQK-LIFKGKSLKEMETPLSAL----GI 73 (92)
T ss_dssp SSEEEEEECS--SS-----EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEEECCSSSBHHHH----TC
T ss_pred CeEEEEEEEC--CE-----EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEE-EEECCeecCCCcccHHHC----CC
Confidence 4566767542 21 223457774 9999999999999999876443 3345544333 5577764 23
Q ss_pred CCC-eEEEEec
Q 033514 102 EDG-FLYVTYS 111 (117)
Q Consensus 102 ~DG-fLyv~Ys 111 (117)
.|| .|+|.-+
T Consensus 74 ~~g~~i~l~~~ 84 (92)
T 1wxv_A 74 QDGCRVMLIGK 84 (92)
T ss_dssp CSSEEEEEESC
T ss_pred CCCCEEEEEec
Confidence 333 5666543
No 84
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.24 E-value=23 Score=22.76 Aligned_cols=45 Identities=9% Similarity=0.237 Sum_probs=33.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEc-CCCCCccchHHHH
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTI 95 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn-~~~p~~~~~l~~l 95 (117)
+-|+.+.||++|...|..+-++++.+.-.++.. +. ...+.+|+++
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~ 68 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL 68 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc
Confidence 458899999999999999999987755444332 34 4556677765
No 85
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=49.83 E-value=25 Score=23.51 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=44.7
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC------CCCeEEEEecCcccC
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD------EDGFLYVTYSGENTF 116 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd------~DGfLyv~Ys~~~~f 116 (117)
-|..+.||+++...|..+.++++.+-- |+.++.....+.+|++ |.-. + .+--|++......+|
T Consensus 17 ev~~sdTV~~lK~kI~~~egIP~~qQr-Li~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 17 DAKESSTVFELKRIVEGILKRPPEEQR-LYKDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCB
T ss_pred EeCCcChHHHHHHHHHHHhCCCHHHeE-EEECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCce
Confidence 488999999999999999999876543 3357776677788887 3222 1 244677777654443
No 86
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.70 E-value=19 Score=21.80 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=20.4
Q ss_pred EEEcCCCCCccchHHHHHhHcCC--------CCCeEEEEecCc
Q 033514 79 IFVDNVLPPTGAIMSTIYDEKKD--------EDGFLYVTYSGE 113 (117)
Q Consensus 79 l~Vn~~~p~~~~~l~~lY~~~kd--------~DGfLyv~Ys~~ 113 (117)
|||.| +--..+.|.+++..|.. ..||-+|.|.+.
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 45566 44445566777776642 357777777654
No 87
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.58 E-value=11 Score=23.52 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=31.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
.+-|+.+.||++|...|..+.++++++--.+ .++... .|.+|++.
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGLVP-EDKTLREI 74 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCC-SSSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeC-CcCcHHHC
Confidence 3568999999999999999999987643333 355443 45566653
No 88
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=49.53 E-value=15 Score=24.87 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=24.3
Q ss_pred hCCCCCceEEEEEcC-CCCCccchHHHHHhHcCC
Q 033514 69 IKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKD 101 (117)
Q Consensus 69 L~l~~~~slfl~Vn~-~~p~~~~~l~~lY~~~kd 101 (117)
+.-.++.-|.|||+| ..+-..+.|.+||..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 344578899999999 457777889999999864
No 89
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.11 E-value=18 Score=22.43 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=39.5
Q ss_pred eEEecCCCchHHHHHHHHHh---hCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEecC
Q 033514 49 KYLVPADLTVGQFVYVIRKR---IKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYSG 112 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~---L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys~ 112 (117)
.+-|+.+.||+++...|..+ -++++++- -|+.++.....+.+|++ |+-. +..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~----ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQ-KLIYAGKILNDDTALKE----YKIDEKNFVVVMVTK 76 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTE-EEEETTEECCTTSBGGG----GTCCSSSEEEEEESS
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhE-EEEECCEECCCcCcHHH----CCCCCCCEEEEEEeC
Confidence 35688999999999999998 45766543 34446655556666654 3333 4477776544
No 90
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.78 E-value=24 Score=22.90 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=28.5
Q ss_pred CCCCceEEEEEcC-CC-CCcc---chHHHHHhHcC-C----CCCeEEEEecCcc
Q 033514 71 LSAEKAIFIFVDN-VL-PPTG---AIMSTIYDEKK-D----EDGFLYVTYSGEN 114 (117)
Q Consensus 71 l~~~~slfl~Vn~-~~-p~~~---~~l~~lY~~~k-d----~DGfLyv~Ys~~~ 114 (117)
++|.+++ |||+| .. -..+ ..|.+|+.+|. . ..||=||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4567775 78887 22 2222 24779999995 2 3689999987754
No 91
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=47.86 E-value=38 Score=23.84 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=26.0
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCc
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~ 75 (117)
...+.||++.|+.+|-.+|+.-++.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 67899999999999999999999987543
No 92
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=46.75 E-value=52 Score=20.66 Aligned_cols=64 Identities=19% Similarity=0.110 Sum_probs=41.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc-CC----CCCccchHHH
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NV----LPPTGAIMST 94 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn-~~----~p~~~~~l~~ 94 (117)
++.|.|.|.... ++. ...-.-|+.+.||+++...|..+.++++.+---+|.+ +. +...+.+|++
T Consensus 13 ~~~v~l~It~s~-~~~---~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSH-NDA---VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESS-CSC---EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECC-CCc---eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 466777775422 110 1334569999999999999999999987654334443 32 3355567765
No 93
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=46.16 E-value=64 Score=21.54 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=56.3
Q ss_pred ccEEEEccCCCCCC-CCccceE-EecCCCchHHHHHHHHHhhCCCC------------------CceEEEEEc-CCC--C
Q 033514 30 IPVIVEKAERSDIP-TIDKKKY-LVPADLTVGQFVYVIRKRIKLSA------------------EKAIFIFVD-NVL--P 86 (117)
Q Consensus 30 ipVIve~~~~~~~p-~l~k~Kf-lvp~~~tv~~~~~~lrk~L~l~~------------------~~slfl~Vn-~~~--p 86 (117)
|-++..+++.--.. .....+| +-+.+.||.++...|.-||.|+. +-.||+.-+ |.+ .
T Consensus 4 iELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L 83 (111)
T 3gs2_A 4 IELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVL 83 (111)
T ss_dssp EEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEEC
T ss_pred eEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEc
Confidence 45667777633111 2235566 47899999999999988876651 223444433 333 7
Q ss_pred CccchHHHHHhHcCCCCCeEEEEecC
Q 033514 87 PTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 87 ~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
+.++++.++-++|=-.+-=|-|-||-
T Consensus 84 ~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 84 DGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred cCcccHHHHhhhhccCCCCeeEEecc
Confidence 89999999999995557788888874
No 94
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=45.84 E-value=60 Score=24.53 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=40.0
Q ss_pred CccceE-EecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEecCc
Q 033514 45 IDKKKY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYSGE 113 (117)
Q Consensus 45 l~k~Kf-lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys~~ 113 (117)
++..-| .=..+++..+|...++..-+-.|+.| .|++. .+-++|++..++ |..|+++.|+.
T Consensus 34 ~~~~~y~~D~~di~~~efy~~~~~~~~~~p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 34 FDGETYYRDGVDITRDECYQRMVDDPKLFPKTS--------LPSVE-SYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSSSCEEEBTTTBCHHHHHHHHHHCTTCCCEEE--------CCCHH-HHHHHHHHHHTTTCCEEEEESCTT
T ss_pred ECCEEEecCCCCCCHHHHHHHHHhCCCCCceec--------CCCHH-HHHHHHHHHHHCCCeEEEEECCCc
Confidence 445556 55568899999999976411223332 35443 677888887554 78999998864
No 95
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.82 E-value=28 Score=22.49 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=36.3
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
...|.|..+.++..++....++.++++.+--|+|=+..+ ..+.|..++
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 346899999999999999999999998876677655454 334444443
No 96
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=45.20 E-value=22 Score=21.52 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=27.7
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccc
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 90 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~ 90 (117)
.=+|+..|+++++ ++|++++++. -+.+|+...+.|.
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 5688999998855 6889999887 4889987655554
No 97
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=44.72 E-value=57 Score=20.60 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=35.6
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 82 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn 82 (117)
+-|+|.|.... ... .....-|+.+.||++|...|..+.++++.+---+|.+
T Consensus 13 ~~v~l~It~s~-~~~---~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 13 DSVHLHITHAN-LKS---FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp CCEEEEEEETT-SSC---CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred ceEEEEEEECC-CCc---eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 56778885522 110 1234579999999999999999999997754444444
No 98
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=44.59 E-value=25 Score=23.50 Aligned_cols=58 Identities=7% Similarity=-0.023 Sum_probs=40.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++. .- ++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~-L~~~G~~L~d~~tL~~y----~i~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKPLEDQLPLGEY----GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEE-EEECCeecCCCCCHHHc----CCCCCCEEEEEEe
Confidence 35689999999999999999999877544 44466555556666643 22 3446776643
No 99
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=44.58 E-value=27 Score=22.78 Aligned_cols=48 Identities=6% Similarity=0.108 Sum_probs=36.0
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
...|.|..+.++..++....++.++++++--|+|-+..+ ..+.|.++|
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl-~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc-CCCCCHHHc
Confidence 346889999999999999999999998866677644444 334454444
No 100
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=44.24 E-value=19 Score=23.01 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=39.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhh-CCCCCceEEEEEcCCCCCccchHHHHHh
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNVLPPTGAIMSTIYD 97 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L-~l~~~~slfl~Vn~~~p~~~~~l~~lY~ 97 (117)
+..|.|.|.-. .++.. ...+-|+.+.||++|...|..++ +..+.+..=|..++.....+.+|++...
T Consensus 21 ~~~m~I~VK~~-~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 21 GHPVTLIIKAP-NQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp --CEEEEEECT-TSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHT
T ss_pred CCeEEEEEEcC-CCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhc
Confidence 35577777532 22211 11345799999999999999876 3332122233346666667778887643
No 101
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.21 E-value=54 Score=20.16 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=33.0
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCc-eEEE
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEK-AIFI 79 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~-slfl 79 (117)
..|.|.|.... .+ .....-|+.+.||+++...|..+.++++++ .|++
T Consensus 6 ~~v~l~I~~~~---~~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 6 SGVMVFISSSL---NS--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CCEEEEEEETT---SS--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred cEEEEEEEECC---CC--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 45777775432 11 234457999999999999999999998654 4444
No 102
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=44.20 E-value=6.2 Score=25.43 Aligned_cols=59 Identities=17% Similarity=0.371 Sum_probs=38.6
Q ss_pred EEec-CCCchHHHHHHHHHhhCCCCC-ceEEEEEcCC------------C---CCccchHHHHHhHcCCC-CCeEEEEec
Q 033514 50 YLVP-ADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNV------------L---PPTGAIMSTIYDEKKDE-DGFLYVTYS 111 (117)
Q Consensus 50 flvp-~~~tv~~~~~~lrk~L~l~~~-~slfl~Vn~~------------~---p~~~~~l~~lY~~~kd~-DGfLyv~Ys 111 (117)
.-|. .+.||++|...|..+.++++. +.|++ ++. + ...+.+|+++ .-. +..|||.|.
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~----gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSL----NLAHGSMVYLAYE 94 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGT----CCCTTCEEECCCS
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHC----CCCCCCEEEEEeC
Confidence 4578 899999999999999998754 34332 332 2 2344456543 322 447888887
Q ss_pred Ccc
Q 033514 112 GEN 114 (117)
Q Consensus 112 ~~~ 114 (117)
.+.
T Consensus 95 ~~~ 97 (107)
T 1wf9_A 95 GER 97 (107)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 103
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=44.20 E-value=15 Score=22.78 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEecCCCchHHHHHHHHHhhCCC
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLS 72 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~ 72 (117)
..||.+.++.+|..-|++++++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46899999999999999999864
No 104
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=44.15 E-value=38 Score=23.76 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=29.8
Q ss_pred CCCceEEEEEcCC-CCCccchHHHHHhHcCCC----------CCeEEEEecCc
Q 033514 72 SAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDE----------DGFLYVTYSGE 113 (117)
Q Consensus 72 ~~~~slfl~Vn~~-~p~~~~~l~~lY~~~kd~----------DGfLyv~Ys~~ 113 (117)
.++..+.|||+|- .+-....|.++|..|..- .||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 4667889999984 456667899999998641 34666666543
No 105
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=43.93 E-value=4.8 Score=26.73 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEE-EEECCEECCCCCchhhh
Confidence 4578889999999999998888876543 33455544555666653
No 106
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=43.79 E-value=21 Score=23.09 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=22.8
Q ss_pred EEEEcCCCCCccchHHHHHhHcCCC--------CCeEEEEecCc
Q 033514 78 FIFVDNVLPPTGAIMSTIYDEKKDE--------DGFLYVTYSGE 113 (117)
Q Consensus 78 fl~Vn~~~p~~~~~l~~lY~~~kd~--------DGfLyv~Ys~~ 113 (117)
=|||+| +.-..+.|.+++..|..- -||-+|.|.+.
T Consensus 41 ~lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 41 TLYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 83 (121)
T ss_dssp EEEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSH
T ss_pred EEEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCH
Confidence 355666 555566777777777542 47778887654
No 107
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=43.66 E-value=60 Score=20.57 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=43.9
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEE-EEcC----CCCCccchHH---HHHhHcCCCCCeEEE
Q 033514 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN----VLPPTGAIMS---TIYDEKKDEDGFLYV 108 (117)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl-~Vn~----~~p~~~~~l~---~lY~~~kd~DGfLyv 108 (117)
..+.+|.+.++.++..-||.++++.+.+.+-+ |++. ...+.|+.|. ++|+-.++..=.|||
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 36789999999999999999999988887766 4442 2247777665 466666654434444
No 108
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=42.66 E-value=67 Score=23.98 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=32.1
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
+..-|.=..+++..+|...+++.=.+ |+.| .|++. ..-++|+ +-|..|+++.|+.
T Consensus 32 ~~~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~---~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 32 DNEEFCDDGQLDIHRMLDILEKHKGR-SYTA--------CPGID-AWLEAFG---DDDEIFVVTITAG 86 (278)
T ss_dssp SSCEEECSTTCCHHHHHHHHHTCCSC-CEEE--------CCCHH-HHHHHHT---TCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-ceec--------CCCHH-HHHHHHh---cCCcEEEEECCCc
Confidence 34445555678888988888753111 2222 34433 3444554 4577999998864
No 109
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=42.24 E-value=10 Score=24.81 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.9
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCC
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLS 72 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~ 72 (117)
-...+||.+.++.+|..-|++++++.
T Consensus 24 ~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 24 IFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 34568999999999999999999875
No 110
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=42.12 E-value=31 Score=20.78 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=24.3
Q ss_pred EEEcCCCC-CccchHHHHHhHcCC---------CCCeEEEEecCcc
Q 033514 79 IFVDNVLP-PTGAIMSTIYDEKKD---------EDGFLYVTYSGEN 114 (117)
Q Consensus 79 l~Vn~~~p-~~~~~l~~lY~~~kd---------~DGfLyv~Ys~~~ 114 (117)
|||+|--+ ..++.|.+++.+|.. .-||-+|.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 55666322 445678888888863 2489999988654
No 111
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.98 E-value=37 Score=21.01 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=26.1
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCC-ceEEEEE
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFV 81 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~-~slfl~V 81 (117)
.-+|.++||++|...|.+..++++. +.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 3589999999999999999999864 5555553
No 112
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=40.29 E-value=40 Score=21.22 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=23.1
Q ss_pred EEEcCCC-CCccchHHHHHhHcCC-------CCCeEEEEecCcc
Q 033514 79 IFVDNVL-PPTGAIMSTIYDEKKD-------EDGFLYVTYSGEN 114 (117)
Q Consensus 79 l~Vn~~~-p~~~~~l~~lY~~~kd-------~DGfLyv~Ys~~~ 114 (117)
|||.|-- -...+.|.+++..|.. .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 5555522 2455678888888854 2488888887643
No 113
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=40.13 E-value=27 Score=23.81 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=40.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- ++..|++...
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Qr-L~~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 92 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 92 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCccccccCCHhHc----CCcccceeeeeec
Confidence 35689999999999999999999886543 34466555667777652 22 2345666543
No 114
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=40.06 E-value=25 Score=21.74 Aligned_cols=32 Identities=6% Similarity=-0.060 Sum_probs=25.6
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~V 81 (117)
--++.+.||+++..-|..+.++++++---+|.
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 35899999999999999999998764444443
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.53 E-value=41 Score=20.73 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=18.7
Q ss_pred EEEcCCCC-CccchHHHHHhHcCC-------CCCeEEEEecCc
Q 033514 79 IFVDNVLP-PTGAIMSTIYDEKKD-------EDGFLYVTYSGE 113 (117)
Q Consensus 79 l~Vn~~~p-~~~~~l~~lY~~~kd-------~DGfLyv~Ys~~ 113 (117)
|||.|--+ ...+.|.+++..|.+ .|||=+|.|.+.
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 18 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 45555222 333456666666643 137777777654
No 116
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=38.89 E-value=51 Score=21.18 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=32.7
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~ 83 (117)
--++.|..+.|+..|...|.++-++.+.+-..||=+.
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 3468899999999999999999999998888888774
No 117
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=38.22 E-value=6.7 Score=27.27 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEEccccCcHHHc
Confidence 4578899999999999999999876543 33455555666777764
No 118
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=38.17 E-value=35 Score=23.68 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=40.7
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys 111 (117)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- ++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y----~I~~gstI~Lvlr 72 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 72 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHEE-EEECCccccCcCcHHHc----CCCCCCEEEEEEE
Confidence 35689999999999999999999887654 44466555666777763 22 2346666543
No 119
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.60 E-value=39 Score=22.76 Aligned_cols=55 Identities=5% Similarity=-0.033 Sum_probs=39.2
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCC-CeEEEE
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDED-GFLYVT 109 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~D-GfLyv~ 109 (117)
.-++.+.||++|...|-..++++++.-- |.-++.....+++|.+ |+-.| +-++|.
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qr-LIy~GKiLKD~eTL~~----~gIk~g~TIhLv 86 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQ-IRYSGKILKNNETLVQ----HGVKPQEIVQVE 86 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEE-EEETTEEECSSCCHHH----HSCCSSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEE-EEECCeEcCCcchHHH----cCCCCCCEEEEE
Confidence 3589999999999999999998877644 4445655577788865 45543 344443
No 120
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.08 E-value=29 Score=20.61 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=8.2
Q ss_pred ecCCCchHHHHHHHHH
Q 033514 52 VPADLTVGQFVYVIRK 67 (117)
Q Consensus 52 vp~~~tv~~~~~~lrk 67 (117)
+|.+.|-.++..++.+
T Consensus 16 Lp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4555555555555443
No 121
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=34.58 E-value=37 Score=27.98 Aligned_cols=59 Identities=14% Similarity=0.282 Sum_probs=42.5
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEc---CCC--CC-ccchHHHHHhHcCCCCC-eEEEEe
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NVL--PP-TGAIMSTIYDEKKDEDG-FLYVTY 110 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn---~~~--p~-~~~~l~~lY~~~kd~DG-fLyv~Y 110 (117)
..|+.+.+++++...|+++++++++..|=||=. +.. .. ++.++.+.+++-. || .|+.+=
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~--~GdII~fQ~ 216 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM--DGDIIVFQK 216 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC--TTEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhccc--CCCEEEEEe
Confidence 678999999999999999999999988888742 212 23 5667777765553 34 454443
No 122
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=34.58 E-value=23 Score=21.66 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=22.6
Q ss_pred EecCCCchHHHHHHHHHhhCCCC-CceEEE
Q 033514 51 LVPADLTVGQFVYVIRKRIKLSA-EKAIFI 79 (117)
Q Consensus 51 lvp~~~tv~~~~~~lrk~L~l~~-~~slfl 79 (117)
-|+.+.|+++|...|.+.++++. .+++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 36788999999999999999863 344444
No 123
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=34.36 E-value=1.2e+02 Score=21.62 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=41.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCC--ceEEEEEc-CC---CCCccchHHHHHhHcCCCCCeEEEEec
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVD-NV---LPPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~--~slfl~Vn-~~---~p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
...+++..|+.+|...+++.++++++ -.|+.+-+ ++ +-..+.+|.++. =.+|..|.|-..
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~---l~~~Q~illE~r 208 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG---LYQGQVLVIEQK 208 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT---CCTTCEEEEEEC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC---CCCCCEEEEEEe
Confidence 46789999999999999999999875 56666554 33 234556777652 233555555554
No 124
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=33.87 E-value=16 Score=30.18 Aligned_cols=51 Identities=8% Similarity=0.114 Sum_probs=37.5
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCC--CceEEE--EEcCCC---CCccchHHHHHh
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSA--EKAIFI--FVDNVL---PPTGAIMSTIYD 97 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~--~~slfl--~Vn~~~---p~~~~~l~~lY~ 97 (117)
.-.++||++-||++++.-++++.++++ ...|-+ ..|+.+ .+.+..+..|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 556789999999999999999999974 333433 334443 577778877766
No 125
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=33.55 E-value=35 Score=24.47 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=39.4
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEe
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTY 110 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Y 110 (117)
.+-|+.+.||++|...|..+.++++++--. +.++.....+.+|++. .-. +..|+|..
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~QrL-i~~Gk~L~D~~tL~dy----gI~~gstI~Lvl 176 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDY----NIQKESTLHLVL 176 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCE-EETTEECCTTCBGGGG----TCCTTCEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHEEE-EECCEECCCCCCHHHC----CCCCCCEEEEEE
Confidence 356899999999999999999998765433 3466655667777663 222 33565543
No 126
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=32.90 E-value=39 Score=20.38 Aligned_cols=57 Identities=7% Similarity=0.042 Sum_probs=35.1
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCceEEEEEc--CCCC-C-ccchHHHHHhHcCC-CCCeEEEEecC
Q 033514 52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVD--NVLP-P-TGAIMSTIYDEKKD-EDGFLYVTYSG 112 (117)
Q Consensus 52 vp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn--~~~p-~-~~~~l~~lY~~~kd-~DGfLyv~Ys~ 112 (117)
++.+.||+++...|..+.++.+..--.+|-. ..+. + .+.+|+++ +- ....|+|....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~----gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDL----PIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTS----SCCTTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHc----CCCCCCEEEEEeCC
Confidence 6889999999999999999875433233321 1231 2 45566543 22 23467776654
No 127
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=31.63 E-value=29 Score=22.08 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=37.4
Q ss_pred ecCCCchHHHHHHH-HHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC--CCCeEEEEec
Q 033514 52 VPADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD--EDGFLYVTYS 111 (117)
Q Consensus 52 vp~~~tv~~~~~~l-rk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd--~DGfLyv~Ys 111 (117)
|+.+.||++|...| ...-++++++-- |..++.....+.+|++ |+- ++.+|++--+
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d----y~I~~~g~ti~lmvs 95 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSD----LKVTPANSTITVMIK 95 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGEE-EEETTEEECTTCBGGG----SCCBTTBCEEEEEEC
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhEE-EEECCEECcCcCCHHH----cCcCCCCCEEEEEEe
Confidence 56999999999999 777688776544 4446665566677775 333 3557766543
No 128
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=31.47 E-value=36 Score=22.80 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=43.3
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-C-------CCeEEEEecCcccC
Q 033514 52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-E-------DGFLYVTYSGENTF 116 (117)
Q Consensus 52 vp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~-------DGfLyv~Ys~~~~f 116 (117)
+..+.||+++...|..+.++++.+--.+| ++.....+.+|++ |+- . +--|++.+...++|
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQrLI~-~Gk~LeD~kTL~d----y~I~~~ta~~q~~atl~Lvlr~~~~f 85 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQRLYK-DDQLLDDGKTLGE----CGFTSQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTTT----TTCCGGGSBTTBCEEEEEEECCSSCC
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeEEEe-CCeECCCcCCHHH----cCCCcCcccCCCCCEEEEEEecCCCc
Confidence 78999999999999999999987654444 5666666667765 221 2 44788887766655
No 129
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.11 E-value=27 Score=20.60 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=14.5
Q ss_pred cchHHHHHhHcCC---------CCCeEEEEecCc
Q 033514 89 GAIMSTIYDEKKD---------EDGFLYVTYSGE 113 (117)
Q Consensus 89 ~~~l~~lY~~~kd---------~DGfLyv~Ys~~ 113 (117)
.+.|.+++..|.. .-||-+|.|.+.
T Consensus 19 e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~ 52 (88)
T 1wf0_A 19 EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADD 52 (88)
T ss_dssp HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCH
T ss_pred HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCH
Confidence 3456666666632 246777777654
No 130
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=30.00 E-value=29 Score=25.69 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=38.3
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~ 85 (117)
++|-|-|. . .+ ....|.|..+.++..++....++.+++...--|+|=+..+
T Consensus 56 e~InLKVk-~-dG-----~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI 106 (207)
T 3tix_A 56 THINLKVS-D-GS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEI 106 (207)
T ss_dssp CEEEEEEE-C-SS-----CEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEEC
T ss_pred CcEEEEEe-c-CC-----CEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeec
Confidence 45666663 2 22 3457999999999999999999999999877777743344
No 131
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=29.84 E-value=40 Score=24.21 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.1
Q ss_pred HHHHHhhCCCCCceEEEEEc
Q 033514 63 YVIRKRIKLSAEKAIFIFVD 82 (117)
Q Consensus 63 ~~lrk~L~l~~~~slfl~Vn 82 (117)
.-||++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45799999999999999996
No 132
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.57 E-value=60 Score=19.31 Aligned_cols=9 Identities=22% Similarity=0.921 Sum_probs=4.8
Q ss_pred CeEEEEecC
Q 033514 104 GFLYVTYSG 112 (117)
Q Consensus 104 GfLyv~Ys~ 112 (117)
||-+|.|.+
T Consensus 53 g~afV~f~~ 61 (99)
T 2div_A 53 GYCFVEFAD 61 (99)
T ss_dssp EEEEEECSC
T ss_pred CEEEEEeCC
Confidence 455555544
No 133
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=29.31 E-value=41 Score=19.73 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=24.7
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccc
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 90 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~ 90 (117)
+-++...|++++... |++++. .+.+.||+.+.+.++
T Consensus 18 ~~~~~~~tv~~Ll~~----l~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 18 LESGAPRRIKDVLGE----LEIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEESSCCBHHHHHHH----TTCCTT-TEEEEETTEECCTTS
T ss_pred EECCCCCcHHHHHHH----hCCCCC-CEEEEECCEECCCcc
Confidence 567888899997664 466654 456889997644443
No 134
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=29.26 E-value=48 Score=25.08 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||..-.+...+.-..++|||+--..
T Consensus 63 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 92 (307)
T 3s5o_A 63 FLTSSERLEVVSRVRQAMPKNRLLLAGSGC 92 (307)
T ss_dssp GSCHHHHHHHHHHHHHTSCTTSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHcCCCCcEEEecCC
Confidence 346799999999999988999999996543
No 135
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=28.88 E-value=82 Score=20.84 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=38.9
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514 27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (117)
Q Consensus 27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~ 85 (117)
+++|-|.|.-.. ++ ...|.|..+.++..++....++.+++...--|+|=+..+
T Consensus 38 ~~~I~LKV~~qd-g~-----ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI 90 (115)
T 3kyd_D 38 GEYIKLKVIGQD-SS-----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI 90 (115)
T ss_dssp -CEEEEEEECTT-SC-----EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC
T ss_pred CCeEEEEEEcCC-CC-----EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC
Confidence 467777774321 22 247899999999999999999999998877777744444
No 136
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.65 E-value=20 Score=23.40 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=39.4
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCC--------------ceEEEEEcCCCC-CccchHHHHHhHcCC-CCCeEEEEecCc
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAE--------------KAIFIFVDNVLP-PTGAIMSTIYDEKKD-EDGFLYVTYSGE 113 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~--------------~slfl~Vn~~~p-~~~~~l~~lY~~~kd-~DGfLyv~Ys~~ 113 (117)
.-|+.+.||+++...|..+.++++. ...-|..++... ..+.+|++ |+- ++.+|++.-...
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d----ygI~~g~~l~lv~~lr 97 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD----YGIRNRDEVSFIKKLG 97 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH----HTCCSSEEEEEEECSC
T ss_pred EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH----cCCCCCCEEEEEehhc
Confidence 3488999999999999999877552 234454566544 45578886 233 244677665443
No 137
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=28.42 E-value=35 Score=25.74 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=54.1
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCc--------cceEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD--IPTID--------KKKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~p~l~--------k~Kflvp~~~---tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.+||..-.+...+.-.+++|||+--...+- +-.+- .--.++|+-. +-.++....+.=..-. .-
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~l 131 (300)
T 3eb2_A 53 YLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAV-EI 131 (300)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SS
T ss_pred ccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CC
Confidence 346799999999999888899999996654321 00000 0012222221 3344444443222111 24
Q ss_pred eEEEEEcCC---CCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 76 AIFIFVDNV---LPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 76 slfl~Vn~~---~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
.+++|=+-. ..-..+++.+|- ++ +.+.-|.+|+-
T Consensus 132 PiilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 168 (300)
T 3eb2_A 132 PVVIYTNPQFQRSDLTLDVIARLA-EH---PRIRYIKDAST 168 (300)
T ss_dssp CEEEEECTTTCSSCCCHHHHHHHH-TS---TTEEEEEECSS
T ss_pred CEEEEECccccCCCCCHHHHHHHH-cC---CCEEEEEcCCC
Confidence 688886522 122235777773 33 56888888764
No 138
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=28.17 E-value=40 Score=25.54 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCc--------cceEEecCC---CchHHHHHHHHHhhCCCCCce
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAERSD--IPTID--------KKKYLVPAD---LTVGQFVYVIRKRIKLSAEKA 76 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~p~l~--------k~Kflvp~~---~tv~~~~~~lrk~L~l~~~~s 76 (117)
-|.|||++-.+...+.-.+++|||+--...+- +-.+- .--.++|+- .+-.++..+.+.=..-. .-.
T Consensus 65 Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lP 143 (304)
T 3l21_A 65 TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-ELP 143 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 46799999999999988899999997643321 00000 001223222 13345555554333222 446
Q ss_pred EEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 77 IFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 77 lfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
+++|=+- ...-..+++.+|- ++ +++.-|.+|+-
T Consensus 144 iilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 179 (304)
T 3l21_A 144 MLLYDIPGRSAVPIEPDTIRALA-SH---PNIVGVXDAKA 179 (304)
T ss_dssp EEEEECHHHHSSCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred EEEEeCccccCCCCCHHHHHHHh-cC---CCEEEEECCCC
Confidence 8888541 1222335667776 33 45777777754
No 139
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.10 E-value=82 Score=19.30 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=6.4
Q ss_pred CCeEEEEecCc
Q 033514 103 DGFLYVTYSGE 113 (117)
Q Consensus 103 DGfLyv~Ys~~ 113 (117)
-||-+|.|.+.
T Consensus 67 ~g~afV~f~~~ 77 (114)
T 2cq4_A 67 KGIAYVEFCEI 77 (114)
T ss_dssp CCCEEEEESCG
T ss_pred CcEEEEEeCcH
Confidence 35666666554
No 140
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=27.63 E-value=80 Score=20.39 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=38.2
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 95 (117)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l 95 (117)
-..|.|..+..+..++...-+|.+++++.-.|||=+..+ ++++|-.+|
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L 79 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTL 79 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHH
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHc
Confidence 457899999999999999999999999988888766555 334444555
No 141
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.49 E-value=79 Score=18.82 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=10.2
Q ss_pred ecCCCchHHHHHHHHHh
Q 033514 52 VPADLTVGQFVYVIRKR 68 (117)
Q Consensus 52 vp~~~tv~~~~~~lrk~ 68 (117)
+|.+.|-.++..++.+.
T Consensus 27 L~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 27 LPRDARVSDLKRALREL 43 (97)
T ss_dssp CCTTCCHHHHHHHHHHT
T ss_pred CCCcCcHHHHHHHHHhc
Confidence 56666666666666544
No 142
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=27.35 E-value=43 Score=25.05 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=54.1
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCCC---chHHHHHHHH---HhhCCC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD--IPTIDK--------KKYLVPADL---TVGQFVYVIR---KRIKLS 72 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~p~l~k--------~Kflvp~~~---tv~~~~~~lr---k~L~l~ 72 (117)
.-|.|||..-.+...+.-.+++|||+--...+- +-.+-+ --.++|+-. +-.++..+.+ ....
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~-- 126 (289)
T 2yxg_A 49 TLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESIN-- 126 (289)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS--
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC--
Confidence 347799999999998888899999997664321 000000 012222221 3334443333 3333
Q ss_pred CCceEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 73 AEKAIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 73 ~~~slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
-.+++|=+- ...-..+++.+|-+++ +++.-|..|+-
T Consensus 127 --lPiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 127 --LPIVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp --SCEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred --CCEEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 357777642 1222345788887555 45777777653
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=27.31 E-value=88 Score=20.25 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=23.1
Q ss_pred EEEEcCCCC-CccchHHHHHhHcCC---------CCCeEEEEecCcc
Q 033514 78 FIFVDNVLP-PTGAIMSTIYDEKKD---------EDGFLYVTYSGEN 114 (117)
Q Consensus 78 fl~Vn~~~p-~~~~~l~~lY~~~kd---------~DGfLyv~Ys~~~ 114 (117)
=|||+|--+ -.+..|.+++..|.. .-||-+|.|.+.+
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPR 121 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHH
Confidence 355666322 345578888888743 2578888887643
No 144
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=27.31 E-value=57 Score=24.78 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC---------CCCCc--cceEEecCCC---chHHHHHHHHHhhCCCCC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD---------IPTID--KKKYLVPADL---TVGQFVYVIRKRIKLSAE 74 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~---------~p~l~--k~Kflvp~~~---tv~~~~~~lrk~L~l~~~ 74 (117)
.-|.+||+.-.+...+.-.+++|||+--...+- +-.+. .--.++|+-. +-.++..+.+.=..-. .
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~-~ 134 (311)
T 3h5d_A 56 TLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADAS-D 134 (311)
T ss_dssp GSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSC-S
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhC-C
Confidence 346799999999999998999999997654211 00111 1112333221 3344444444322211 3
Q ss_pred ceEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 75 KAIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 75 ~slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
-.+++|=+- ...-..+++.+|-+ + +++.-|.+|+
T Consensus 135 lPiilYn~P~~tg~~l~~~~~~~La~-~---pnIvgiKdss 171 (311)
T 3h5d_A 135 LPIIIYNIPGRVVVELTPETMLRLAD-H---PNIIGVKECT 171 (311)
T ss_dssp SCEEEEECHHHHSSCCCHHHHHHHHT-S---TTEEEEEECS
T ss_pred CCEEEEecccccCCCCCHHHHHHHhc-C---CCEEEEEeCC
Confidence 468887541 12222345667753 2 5577777776
No 145
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=27.31 E-value=36 Score=21.25 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=28.0
Q ss_pred eEEecCCCchHHHHHHHHHhhC-CC---------CCceEEEEEcCCCCCccc
Q 033514 49 KYLVPADLTVGQFVYVIRKRIK-LS---------AEKAIFIFVDNVLPPTGA 90 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~-l~---------~~~slfl~Vn~~~p~~~~ 90 (117)
.+-++...|+++++..|..+.. +. ....+-++||+...+.+.
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~ 81 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE 81 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC
Confidence 3456788999999999987631 11 124577999986644343
No 146
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=27.07 E-value=45 Score=24.98 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||.+-.+...+.-.+++|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~ 79 (291)
T 3a5f_A 50 TMTETERKETIKFVIDKVNKRIPVIAGTGS 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 346799999999988888899999987654
No 147
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=26.93 E-value=1.3e+02 Score=19.38 Aligned_cols=49 Identities=4% Similarity=0.043 Sum_probs=33.7
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514 28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (117)
Q Consensus 28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V 81 (117)
+.|.|.|..... + ...-.-|+.+.||++|...|..+.++++..---+|.
T Consensus 5 ~~v~l~V~~~~~---~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 5 EVYDLEITTNAT---D--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEEEESSC---C--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred CEEEEEEEECCC---C--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 457777754321 1 123456899999999999999999998765433333
No 148
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=26.89 E-value=44 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEcc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKA 37 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~ 37 (117)
.-|.+||..-.+...+.-.+++|||+--.
T Consensus 61 ~Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 61 ALSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 34679999999999988889999999764
No 149
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=26.74 E-value=45 Score=25.05 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.+||.+-.+...+.-.+++|||+--..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 85 (297)
T 3flu_A 56 TLSVEEHTAVIEAVVKHVAKRVPVIAGTGA 85 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 346799999999999888899999996654
No 150
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=26.71 E-value=45 Score=25.29 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||.+-.+...+.-.+++|||+--..
T Consensus 57 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 86 (309)
T 3fkr_A 57 AITDDERDVLTRTILEHVAGRVPVIVTTSH 86 (309)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 346799999999998888899999997654
No 151
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=26.65 E-value=44 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAER 39 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~ 39 (117)
-|.|||..-.+...+.-.+++|||+--...
T Consensus 66 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 95 (304)
T 3cpr_A 66 TTAAEKLELLKAVREEVGDRAKLIAGVGTN 95 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEecCCCC
Confidence 467999999999998888999999976643
No 152
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=26.65 E-value=45 Score=25.00 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAER 39 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~ 39 (117)
.-|.|||.+-.+...+.-.+++|||+--...
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 79 (294)
T 2ehh_A 49 TLTFEEHEKVIEFAVKRAAGRIKVIAGTGGN 79 (294)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 3577999999999888888999999876653
No 153
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=26.61 E-value=59 Score=24.35 Aligned_cols=30 Identities=7% Similarity=-0.117 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||..-.+...+.-.+++|||+--..
T Consensus 52 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 81 (294)
T 3b4u_A 52 SVGSRERQAILSSFIAAGIAPSRIVTGVLV 81 (294)
T ss_dssp GSCHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 346799999999999888899999997665
No 154
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=26.60 E-value=45 Score=25.38 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
-|.+||.+-.+...+.-.+++|||+--..
T Consensus 73 Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 101 (314)
T 3qze_A 73 LDVEEHIQVIRRVVDQVKGRIPVIAGTGA 101 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999999999888899999996654
No 155
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=26.49 E-value=46 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.+||++-.+...+.-.+++|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (291)
T 3tak_A 50 TLSMEEHTQVIKEIIRVANKRIPIIAGTGA 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 346799999999999888899999996654
No 156
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=26.29 E-value=47 Score=24.86 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||..-.+...+.-.+++|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (292)
T 2ojp_A 50 TLNHDEHADVVMMTLDLADGRIPVIAGTGA 79 (292)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 346799999999988888899999987654
No 157
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=26.20 E-value=46 Score=24.92 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||..-.+...+.-.+++|||+--..
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 53 MLSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 346799999999988888899999997654
No 158
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=25.95 E-value=46 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||+.-.+...+.-.+++|||+--..
T Consensus 60 ~Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 89 (303)
T 2wkj_A 60 VQSLSEREQVLEIVAEEAKGKIKLIAHVGC 89 (303)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 347799999999988888899999997654
No 159
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=25.89 E-value=48 Score=24.84 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
-|.|||.+-.+...+.-.+++|||+--..
T Consensus 52 Lt~~Er~~v~~~~~~~~~grvpviaGvg~ 80 (292)
T 3daq_A 52 LTTDEKELILKTVIDLVDKRVPVIAGTGT 80 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 46799999999988888899999997653
No 160
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=25.83 E-value=79 Score=20.19 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=31.3
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033514 43 PTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 83 (117)
Q Consensus 43 p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~ 83 (117)
|...+.+..|.++.++.|+..--.+++++++++- -|.-|+
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~-~Lkh~~ 56 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEY-DLKFQR 56 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGC-EEEETT
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhC-eEEeCC
Confidence 3456888999999999999999999999987643 343344
No 161
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=25.70 E-value=90 Score=17.32 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=8.3
Q ss_pred CCeEEEEecCcc
Q 033514 103 DGFLYVTYSGEN 114 (117)
Q Consensus 103 DGfLyv~Ys~~~ 114 (117)
-|+-+|.|.+.+
T Consensus 41 ~g~afV~f~~~~ 52 (75)
T 1iqt_A 41 RGFCFITFKEEE 52 (75)
T ss_dssp CCCEEEECSSSH
T ss_pred CCEEEEEECCHH
Confidence 467788877654
No 162
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=25.67 E-value=42 Score=25.57 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCc-cceEEecCC---CchHHHHHHHH---HhhCCCC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAERSD--I-------PTID-KKKYLVPAD---LTVGQFVYVIR---KRIKLSA 73 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~-------p~l~-k~Kflvp~~---~tv~~~~~~lr---k~L~l~~ 73 (117)
-|.+||++-.+...+.-.+++|||+--...+- + -.+. .--.++|+- .+-.++..+.+ ....
T Consensus 74 Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~--- 150 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIG--- 150 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS---
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC---
Confidence 46799999999999888899999996653321 0 0000 001122221 12234444443 3333
Q ss_pred CceEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 74 EKAIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 74 ~~slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
-.+++|=+- ...-..+++.+|-.++ +.+.-|.+++-
T Consensus 151 -lPiilYn~P~~tg~~l~~~~~~~L~a~~---pnIvgiKdssg 189 (315)
T 3na8_A 151 -VPVMLYNNPGTSGIDMSVELILRIVREV---DNVTMVKESTG 189 (315)
T ss_dssp -SCEEEEECHHHHSCCCCHHHHHHHHHHS---TTEEEEEECSS
T ss_pred -CcEEEEeCcchhCcCCCHHHHHHHHhcC---CCEEEEECCCC
Confidence 468887642 1222235788886555 45777777754
No 163
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=25.47 E-value=48 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||+.-.+...+.-.+++|||+--..
T Consensus 61 ~Ls~eEr~~vi~~~~~~~~grvpViaGvg~ 90 (314)
T 3d0c_A 61 ALTIEEAKQVATRVTELVNGRATVVAGIGY 90 (314)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEEECS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEecCCc
Confidence 347799999999888888899999997654
No 164
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=25.41 E-value=62 Score=19.49 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=31.0
Q ss_pred HHHHHHHhhCCCcccEEEEccCCCCC---CCCccceEEecCCCchHHHHHHHHHhhCCC
Q 033514 17 AEAERIREKYPDRIPVIVEKAERSDI---PTIDKKKYLVPADLTVGQFVYVIRKRIKLS 72 (117)
Q Consensus 17 ~e~~~i~~k~p~~ipVIve~~~~~~~---p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~ 72 (117)
.-.+.+++.+| .+|||+=......- ..++.. -.+.+..+..++...|++-+.-.
T Consensus 68 ~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 68 QVARVAREIDP-NMPIVYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHHHHHHCT-TCCEEEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-CCCEEEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhcC
Confidence 34566777766 68877754332110 011111 24666788888888888776543
No 165
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=25.05 E-value=51 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||+.-.+...+.-.+++|||+--..
T Consensus 61 ~Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 90 (301)
T 1xky_A 61 TLTSEEKVALYRHVVSVVDKRVPVIAGTGS 90 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCceEEeCCCC
Confidence 346799999999988888899999997654
No 166
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=25.02 E-value=28 Score=20.56 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=26.0
Q ss_pred CCCchHHHHHHHHHhhCCCCC-ceEEEEEcCCC-CCccch
Q 033514 54 ADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVL-PPTGAI 91 (117)
Q Consensus 54 ~~~tv~~~~~~lrk~L~l~~~-~slfl~Vn~~~-p~~~~~ 91 (117)
...|++++...|..+-++... +.+-+.||+.. +..+..
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~ 58 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTP 58 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcC
Confidence 567999999998765333321 46788999876 654443
No 167
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=24.96 E-value=1.4e+02 Score=19.74 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=46.1
Q ss_pred Cccc--EEEEccCCCCCCCCcc-----ceEEecCCCchHHHHHHHHHhhCCCCC----ceEEEEEcC--C-----C-CCc
Q 033514 28 DRIP--VIVEKAERSDIPTIDK-----KKYLVPADLTVGQFVYVIRKRIKLSAE----KAIFIFVDN--V-----L-PPT 88 (117)
Q Consensus 28 ~~ip--VIve~~~~~~~p~l~k-----~Kflvp~~~tv~~~~~~lrk~L~l~~~----~slfl~Vn~--~-----~-p~~ 88 (117)
..+| .+||..... +..+. .--+||++..+.|++...=.+|+-+.+ ..=-+-|+| - + +.+
T Consensus 6 ~mlPV~CVVE~~~~~--~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p 83 (105)
T 3tuo_A 6 TMLPVFCVVEHYENA--IEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAP 83 (105)
T ss_dssp SEEEEEEEEEEECCC--SSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCT
T ss_pred cceeeEEEEEecccc--cccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCc
Confidence 3456 477777432 12221 223899999999999999999998743 222456776 2 2 578
Q ss_pred cchHHHHHhH
Q 033514 89 GAIMSTIYDE 98 (117)
Q Consensus 89 ~~~l~~lY~~ 98 (117)
+.++|++-.+
T Consensus 84 ~~TV~d~L~e 93 (105)
T 3tuo_A 84 DATVADMLQD 93 (105)
T ss_dssp TCBHHHHHTT
T ss_pred hhhHHHHHHH
Confidence 8899988654
No 168
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=24.88 E-value=45 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||..-.+...+.-.+++|||+--..
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 78 (297)
T 2rfg_A 49 TLTEEEHKRVVALVAEQAQGRVPVIAGAGS 78 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCBEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEccCC
Confidence 347799999999988888899999997664
No 169
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=24.69 E-value=88 Score=18.64 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=9.2
Q ss_pred ecCCCchHHHHHHHHHh
Q 033514 52 VPADLTVGQFVYVIRKR 68 (117)
Q Consensus 52 vp~~~tv~~~~~~lrk~ 68 (117)
+|.+.|-.++..++.+.
T Consensus 8 Lp~~~t~~~l~~~F~~~ 24 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYY 24 (101)
T ss_dssp CCSSCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 35555656655555443
No 170
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=24.68 E-value=52 Score=24.87 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD--IPTIDK--------KKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~p~l~k--------~Kflvp~~~---tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.|||+.-.+...+.-.+++|||+--...+- +-.+-+ --.++|+-. +-.++....+.=..-. .-
T Consensus 61 ~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~l 139 (306)
T 1o5k_A 61 TVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERT-DL 139 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC-SS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CC
Confidence 346799999999988888899999997654321 000000 012233322 3345555554333211 34
Q ss_pred eEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 76 AIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 76 slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
.+++|=+- ...-..+++.+|-+++ +++.-|.+|+-
T Consensus 140 PiilYn~P~~tg~~l~~~~~~~La~~~---pnIvgiKdssg 177 (306)
T 1o5k_A 140 GIVVYNVPGRTGVNVLPETAARIAADL---KNVVGIXEANP 177 (306)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCC
T ss_pred CEEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEeCCCC
Confidence 67777642 1222335677786444 45777777653
No 171
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=24.65 E-value=1.2e+02 Score=19.05 Aligned_cols=38 Identities=13% Similarity=0.353 Sum_probs=28.4
Q ss_pred eEEEEEcCCCC-CccchHHHHHhHcCC--------CCCeEEEEecCc
Q 033514 76 AIFIFVDNVLP-PTGAIMSTIYDEKKD--------EDGFLYVTYSGE 113 (117)
Q Consensus 76 slfl~Vn~~~p-~~~~~l~~lY~~~kd--------~DGfLyv~Ys~~ 113 (117)
+-.|||.|--+ ...+.|.+|+.+|.. .-||=.|.|++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 55788988666 455699999999854 467777777765
No 172
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=24.61 E-value=89 Score=23.40 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=36.9
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEecCc
Q 033514 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYSGE 113 (117)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys~~ 113 (117)
+..-|.-..+++..+|...++.. + -|+.| .|++. .+-++|++..+ .|..|+++.|+.
T Consensus 35 ~~~~y~D~~di~~~efy~~~~~~-~-~p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 35 NGQDYKDGITIEPKQVYDAMRQG-H-TVKTA--------QPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp TTEEEEBTTTBCHHHHHHHHTTT-C-CCEEE--------CCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhC-C-CCeeC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 44455555678889999888753 2 23433 45544 47778877643 367999998864
No 173
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=24.57 E-value=98 Score=23.84 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=37.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEE
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVT 109 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~ 109 (117)
..-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++. .-. +..|+|.
T Consensus 247 ~leV~~s~TV~dLK~kI~~~~GIp~~~QR-Li~~Gk~L~D~~TLsdy----gI~~gstL~Lv 303 (307)
T 3ai5_A 247 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLV 303 (307)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEE-EEeCCeecCCCCCHHHc----CCCCCCEEEEE
Confidence 34589999999999999999999876543 34466555556666543 333 3356654
No 174
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=24.57 E-value=51 Score=24.79 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHHhhCCC-cccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPD-RIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~-~ipVIve~~~ 38 (117)
.-|.|||++-.+...+.-.+ ++|||+--..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~ 86 (301)
T 3m5v_A 56 TLTHEEHRTCIEIAVETCKGTKVKVLAGAGS 86 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCCeEEEeCCC
Confidence 34679999999999988888 9999996654
No 175
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=24.48 E-value=51 Score=25.33 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
-|.|||+.-.+...+.-.+++|||+--..
T Consensus 84 Ls~eEr~~vi~~~ve~~~grvpViaGvg~ 112 (332)
T 2r8w_A 84 LTREERRRAIEAAATILRGRRTLMAGIGA 112 (332)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999999999888899999997654
No 176
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=24.24 E-value=47 Score=25.36 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCc-cceEEecCCC---chHHHHHHHH---HhhCCCC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAERSD--I-------PTID-KKKYLVPADL---TVGQFVYVIR---KRIKLSA 73 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~-------p~l~-k~Kflvp~~~---tv~~~~~~lr---k~L~l~~ 73 (117)
-|.+||++-.+...+.-.+++|||+--...+- + -.+. .--.++|+-. +-..+..+.+ ...
T Consensus 72 Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~---- 147 (315)
T 3si9_A 72 LTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI---- 147 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC----
T ss_pred cCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC----
Confidence 46799999999999888899999996654321 0 0000 0012222211 2233333333 333
Q ss_pred CceEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 74 EKAIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 74 ~~slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
.-.+++|=+- ...-..+++.+|-+++ +++.-|.+|+.
T Consensus 148 ~lPiilYn~P~~tg~~l~~~~~~~La~~~---pnIvgiKdssg 187 (315)
T 3si9_A 148 SIPIIIYNIPSRSVIDMAVETMRDLCRDF---KNIIGVKDATG 187 (315)
T ss_dssp SSCEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECSC
T ss_pred CCCEEEEeCchhhCCCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 3457887541 1222235778887655 45777777754
No 177
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=24.12 E-value=54 Score=25.00 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCc--------cceEEecCC-----CchHHHHHHHHHhhCCCCC
Q 033514 10 HEFEKRRAEAERIREKYPDRIPVIVEKAERSD--IPTID--------KKKYLVPAD-----LTVGQFVYVIRKRIKLSAE 74 (117)
Q Consensus 10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~p~l~--------k~Kflvp~~-----~tv~~~~~~lrk~L~l~~~ 74 (117)
-|.+||.+-.+...+.-.+++|||+--...+- +-.+- .--.++|.. .+-..+..+.+.=..- ..
T Consensus 61 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a-~~ 139 (318)
T 3qfe_A 61 LTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQ-SP 139 (318)
T ss_dssp SCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHH-CS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhh-CC
Confidence 46799999999999888999999996654221 00000 001233331 2334444444322111 12
Q ss_pred ceEEEEEcC--C--CCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 75 KAIFIFVDN--V--LPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 75 ~slfl~Vn~--~--~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
-.+++|=+- + ..-..+++.+|-+++ +++.-|.+++-
T Consensus 140 lPiilYn~P~~t~g~~l~~~~~~~La~~~---pnIvgiKdssg 179 (318)
T 3qfe_A 140 LPVVIYNFPGVCNGIDLDSDMITTIARKN---PNVVGVKLTCA 179 (318)
T ss_dssp SCEEEEECCC----CCCCHHHHHHHHHHC---TTEEEEEESSC
T ss_pred CCEEEEeCCcccCCCCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 468888652 1 222235788887655 45777777653
No 178
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=24.08 E-value=48 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAE 38 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~ 38 (117)
.-|.|||..-.+...+.-.+++|||+--..
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 78 (292)
T 2vc6_A 49 TLSKSEHEQVVEITIKTANGRVPVIAGAGS 78 (292)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCBEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 357799999999999888899999997654
No 179
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.78 E-value=68 Score=24.27 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=51.9
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCc-cceEEecCCC--chHHHHHHHH---HhhCCCC
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD--I-------PTID-KKKYLVPADL--TVGQFVYVIR---KRIKLSA 73 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~-------p~l~-k~Kflvp~~~--tv~~~~~~lr---k~L~l~~ 73 (117)
.-|.+||.+-.+...+.- .++|||+--...+- + -.+. .--.++|.-. +-..+....+ .... +
T Consensus 57 ~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~--~ 133 (313)
T 3dz1_A 57 KLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIG--D 133 (313)
T ss_dssp GSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHC--T
T ss_pred hCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCC--C
Confidence 346799999999999988 99999996654311 0 0000 0001121111 2233333333 3432 2
Q ss_pred CceEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEe
Q 033514 74 EKAIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTY 110 (117)
Q Consensus 74 ~~slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Y 110 (117)
+-.+++|=+- ...-..+++.+|-+++ +++.-|.+
T Consensus 134 ~lPiilYn~P~~tg~~l~~~~~~~La~~~---pnIvgiKd 170 (313)
T 3dz1_A 134 DVPWVLQDYPLTLSVVMTPKVIRQIVMDS---ASCVMLKH 170 (313)
T ss_dssp TSCEEEEECHHHHCCCCCHHHHHHHHHHC---SSEEEEEE
T ss_pred CCcEEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEc
Confidence 2458887541 1222235888888766 44777777
No 180
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=23.54 E-value=53 Score=25.86 Aligned_cols=97 Identities=6% Similarity=-0.015 Sum_probs=53.0
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCC---CchHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD--IPTIDK--------KKYLVPAD---LTVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~p~l~k--------~Kflvp~~---~tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.|||.+-.+...+.-.+++|||+--...+- +-.+-+ --.++|+- .+-.++....+.=.. .-
T Consensus 108 ~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~---a~ 184 (360)
T 4dpp_A 108 LMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLH---MG 184 (360)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTGG---GS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH---hC
Confidence 346799999999999888999999996653221 000000 01223321 133455555543221 13
Q ss_pred eEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514 76 AIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSG 112 (117)
Q Consensus 76 slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~ 112 (117)
.+++|=+- ...-..+++.+|- ++ +++.-|.+|+
T Consensus 185 PiilYNiP~rTg~~ls~e~l~~La-~~---pnIvGIKdss 220 (360)
T 4dpp_A 185 PTIIYNVPGRTGQDIPPRAIFKLS-QN---PNLAGVKECV 220 (360)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHT-TS---TTEEEEEECS
T ss_pred CEEEEeCCcccCCCCCHHHHHHHh-cC---CCEEEEEeCC
Confidence 68887541 1222235677774 22 5577777765
No 181
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=22.94 E-value=37 Score=20.01 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=23.2
Q ss_pred cCCCchHHHHHHHHHhhC-----CCCCceEEEEEcCCCCCcc
Q 033514 53 PADLTVGQFVYVIRKRIK-----LSAEKAIFIFVDNVLPPTG 89 (117)
Q Consensus 53 p~~~tv~~~~~~lrk~L~-----l~~~~slfl~Vn~~~p~~~ 89 (117)
+...|+++++..|..+.. +. ...+.+.||+...+.+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~-~~~~~v~vN~~~v~~~ 63 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALE-DGKLLAAVNQTLVSFD 63 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHC-CTTCEEEETTEECCTT
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhc-CCCEEEEECCEECCCC
Confidence 466799999998875521 22 2346799998653333
No 182
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=22.75 E-value=34 Score=20.74 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.2
Q ss_pred eEEecCCCchHHHHHHHHHhhC------CCCC----ceEEEEEcCCCCCcc
Q 033514 49 KYLVPADLTVGQFVYVIRKRIK------LSAE----KAIFIFVDNVLPPTG 89 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~------l~~~----~slfl~Vn~~~p~~~ 89 (117)
.+-+|...|+++++..|..+.. +..+ ..+-++||+.....+
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~ 71 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG 71 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC
Confidence 3456778899999999987652 1211 237889998654333
No 183
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=22.71 E-value=59 Score=25.13 Aligned_cols=101 Identities=11% Similarity=0.151 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033514 9 EHEFEKRRAEAERIREKYPDRIPVIVEKAERSD--IPTIDK--------KKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (117)
Q Consensus 9 ~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~--~p~l~k--------~Kflvp~~~---tv~~~~~~lrk~L~l~~~~ 75 (117)
.-|.|||..-.+...+.-.+++|||+--...+- +-.+-+ --.++|+-. +-.++..+.+.=..- ..-
T Consensus 80 ~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a-~~l 158 (343)
T 2v9d_A 80 QLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADS-VTL 158 (343)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHT-CSS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCC
Confidence 346799999999999888899999997664321 000000 012233321 334444444332211 124
Q ss_pred eEEEEEcC---CCCCccchHHHHHhHcCCCCCeEEEEecCc
Q 033514 76 AIFIFVDN---VLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 113 (117)
Q Consensus 76 slfl~Vn~---~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~ 113 (117)
.++||=+- ...-..+++.+|-+++ +++.-|.+|+-
T Consensus 159 PiilYn~P~~tg~~l~~e~~~~La~~~---pnIvgiKdssg 196 (343)
T 2v9d_A 159 PVMLYNFPALTGQDLTPALVKTLADSR---SNIIGIKDTID 196 (343)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred CEEEEeCchhcCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 57777642 1222335677776444 45666776653
No 184
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=22.18 E-value=62 Score=20.62 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHhhCCCcccE
Q 033514 11 EFEKRRAEAERIREKYPDRIPV 32 (117)
Q Consensus 11 ~~e~R~~e~~~i~~k~p~~ipV 32 (117)
+| +|+--+|.++.+||++|-|
T Consensus 39 ~f-~RkLIYQ~~~~kfp~~i~v 59 (87)
T 1ug8_A 39 GF-QRKLIYQTLSWKYPKGIHV 59 (87)
T ss_dssp SH-HHHHHHHHHHHHSSSSEEE
T ss_pred HH-HHHHHHHHHHHhcCCceEE
Confidence 44 4556899999999999843
No 185
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=22.12 E-value=1e+02 Score=18.51 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=13.3
Q ss_pred cchHHHHHhHcCCC------CCeEEEEecCc
Q 033514 89 GAIMSTIYDEKKDE------DGFLYVTYSGE 113 (117)
Q Consensus 89 ~~~l~~lY~~~kd~------DGfLyv~Ys~~ 113 (117)
.+.|.+++..|..- -||-+|.|.+.
T Consensus 37 ~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~ 67 (97)
T 2xnq_A 37 KEDLFRIFSPYGHIMQINIKNAFGFIQFDNP 67 (97)
T ss_dssp HHHHHHHHGGGSCEEEEEECSSEEEEEESSH
T ss_pred HHHHHHHHHhcCCEEEEEEeCCEEEEEECCH
Confidence 34555566655431 36666666543
No 186
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=21.79 E-value=97 Score=27.78 Aligned_cols=50 Identities=8% Similarity=0.252 Sum_probs=34.8
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCC-----ceEEEEEcCCCC------CccchHHHHHhHcC
Q 033514 49 KYLVPADLTVGQFVYVIRKRIKLSAE-----KAIFIFVDNVLP------PTGAIMSTIYDEKK 100 (117)
Q Consensus 49 Kflvp~~~tv~~~~~~lrk~L~l~~~-----~slfl~Vn~~~p------~~~~~l~~lY~~~k 100 (117)
+|-|+.++|+.+|+..++++++++.. .+ -||.. ..| ..+.+|.+|++.-.
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~-~ly~~-~~~~~~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVS-LLYAS-FFPPKKLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTE-EEEET-TCCHHHHHHHTTSBHHHHHHHHS
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCc-EEEec-CCCchhhHHhccCCHHHHHHhhc
Confidence 66787899999999999999887532 11 12322 233 35678999998753
No 187
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.58 E-value=1e+02 Score=19.04 Aligned_cols=36 Identities=11% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEcCCCC-CccchHHHHHhHcCC-------------CCCeEEEEecCcc
Q 033514 79 IFVDNVLP-PTGAIMSTIYDEKKD-------------EDGFLYVTYSGEN 114 (117)
Q Consensus 79 l~Vn~~~p-~~~~~l~~lY~~~kd-------------~DGfLyv~Ys~~~ 114 (117)
|||+|--+ .....|.+++..|.. .-||-+|.|.+.+
T Consensus 14 lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e 63 (103)
T 1s79_A 14 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIE 63 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHH
T ss_pred EEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHH
Confidence 44554222 333466666666642 2478888887653
No 188
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=21.54 E-value=1.6e+02 Score=18.62 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCC-CccchHHHHHhHcC-C----------CCCeEEEEecCcc
Q 033514 73 AEKAIFIFVDNVLP-PTGAIMSTIYDEKK-D----------EDGFLYVTYSGEN 114 (117)
Q Consensus 73 ~~~slfl~Vn~~~p-~~~~~l~~lY~~~k-d----------~DGfLyv~Ys~~~ 114 (117)
+....=|||.|--+ ...+.|.+++..|. + ..||=+|.|.+.+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e 78 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEE 78 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHH
Confidence 33444566666322 34457777777775 1 2577788877643
No 189
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=21.54 E-value=1.1e+02 Score=18.09 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=16.3
Q ss_pred ccchHHHHHhHcCCC------CCeEEEEecCc
Q 033514 88 TGAIMSTIYDEKKDE------DGFLYVTYSGE 113 (117)
Q Consensus 88 ~~~~l~~lY~~~kd~------DGfLyv~Ys~~ 113 (117)
..+.|.+++..|..- -||-+|.|.+.
T Consensus 24 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~ 55 (96)
T 2kvi_A 24 SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNP 55 (96)
T ss_dssp CHHHHHHHHTTTCCCCEEEEETTEEEEEESCH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCH
Confidence 445667777777542 36777777654
No 190
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=21.30 E-value=1.3e+02 Score=22.31 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=37.9
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEecCc
Q 033514 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYSGE 113 (117)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys~~ 113 (117)
+..-|.-..+++..+|...+++.-.+ |+.| .|++. .+-++|++..++ |..|+++.|+.
T Consensus 33 ~~~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 33 SGAIYRDWEEITPTEIFQKVREGAAF-PTTS--------QPSPE-DFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp TTEEEETTTTCCHHHHHHHHHTTCCC-CEEE--------CCCHH-HHHHHHHHHTTSCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-cccC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 44455555678999999988753222 2332 34443 677888887554 77999998864
No 191
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=21.04 E-value=1.7e+02 Score=18.76 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=48.4
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEecC--CCchHHHHHHHHHhhCCCCC--ceEEEEEcCC-CCCccchHHHHHhHcC
Q 033514 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPA--DLTVGQFVYVIRKRIKLSAE--KAIFIFVDNV-LPPTGAIMSTIYDEKK 100 (117)
Q Consensus 26 ~p~~ipVIve~~~~~~~p~l~k~Kflvp~--~~tv~~~~~~lrk~L~l~~~--~slfl~Vn~~-~p~~~~~l~~lY~~~k 100 (117)
-|-.-|..|--+.+++.+ -.-.+++|+. -.|+.+|...|-++++++.+ ..||-. ++. +-+.+ + .
T Consensus 9 ~~~~~pk~I~v~rNGD~~-~~g~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~-~G~~V~~l~----d----l- 77 (108)
T 2dnf_A 9 KPLQEPCTIFLIANGDLI-NPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTL-EGKLVESGA----E----L- 77 (108)
T ss_dssp CCCCCCEEEEECBTTCSS-SCCEEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEET-TCCEESSTT----S----C-
T ss_pred cCCCcceEEEEEeCCCCC-CCCEEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcC-CCCEeCCHH----H----h-
Confidence 345556667677777643 4446778875 45899999999999999853 555542 332 22322 1 1
Q ss_pred CCCCeEEEEecCc
Q 033514 101 DEDGFLYVTYSGE 113 (117)
Q Consensus 101 d~DGfLyv~Ys~~ 113 (117)
.||-.||+.+.|
T Consensus 78 -~dg~~YVa~g~E 89 (108)
T 2dnf_A 78 -ENGQFYVAVGRD 89 (108)
T ss_dssp -CSSCBEEEECSS
T ss_pred -CCCCEEEEeCCC
Confidence 366699998754
No 192
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=20.83 E-value=85 Score=19.95 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=20.9
Q ss_pred ccccHHHHHHHHHHHHhhCC-CcccEEEEc
Q 033514 8 IEHEFEKRRAEAERIREKYP-DRIPVIVEK 36 (117)
Q Consensus 8 ~~~~~e~R~~e~~~i~~k~p-~~ipVIve~ 36 (117)
.--+||++..+++.-..-.| ++|||.-+.
T Consensus 66 Svd~FE~~Le~aQ~el~i~~~~~ipV~Y~~ 95 (99)
T 2lna_A 66 SVDTFERNLETLQQELGIEGENRVPVVYIA 95 (99)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTTCCCEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCcccccCeEEee
Confidence 44579999988877665544 799997654
No 193
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.81 E-value=98 Score=18.84 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=8.4
Q ss_pred CCeEEEEecCcc
Q 033514 103 DGFLYVTYSGEN 114 (117)
Q Consensus 103 DGfLyv~Ys~~~ 114 (117)
-||-+|.|.+.+
T Consensus 65 ~g~afV~f~~~~ 76 (113)
T 2cpe_A 65 KGDATVSYEDPP 76 (113)
T ss_dssp CSEEEEEBSSHH
T ss_pred eeEEEEEECCHH
Confidence 368888887653
No 194
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.72 E-value=95 Score=18.37 Aligned_cols=15 Identities=0% Similarity=0.093 Sum_probs=7.7
Q ss_pred ecCCCchHHHHHHHH
Q 033514 52 VPADLTVGQFVYVIR 66 (117)
Q Consensus 52 vp~~~tv~~~~~~lr 66 (117)
+|.+.|-.++..++.
T Consensus 25 lp~~~t~~~l~~~F~ 39 (97)
T 1why_A 25 LGPNTSLAALAREFD 39 (97)
T ss_dssp CCSSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 455555555555444
No 195
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=20.53 E-value=77 Score=20.46 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=33.1
Q ss_pred CCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCC-eEEEEecCcccCC
Q 033514 54 ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTYSGENTFG 117 (117)
Q Consensus 54 ~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG-fLyv~Ys~~~~fG 117 (117)
..+++.+++.-+.+.++++.++ ....++++|-.- .-|| |++ .+++.||
T Consensus 28 ~~~~F~dL~~eV~~~~~~s~ee------------~~~~iaqfYTdL-n~DGRFi~---lGen~Wg 76 (99)
T 2krc_A 28 KPVPFQELLNEIASLLGVKKEE------------LGDRIAQFYTDL-NIDGRFLA---LSDQTWG 76 (99)
T ss_dssp SCEEHHHHHHHHHHHHTSCGGG------------GTHHHHHHHHHH-HTCSSCEE---SSSSEEE
T ss_pred CcccHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHH-hccCCeeE---CCCCcee
Confidence 5678889998888888776443 136789999887 4566 443 3455554
No 196
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.50 E-value=1.3e+02 Score=17.98 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=7.7
Q ss_pred CCeEEEEecCc
Q 033514 103 DGFLYVTYSGE 113 (117)
Q Consensus 103 DGfLyv~Ys~~ 113 (117)
-||-+|.|.+.
T Consensus 52 ~g~afV~f~~~ 62 (109)
T 2dis_A 52 RGFAFVEYESH 62 (109)
T ss_dssp CCEEEEEESSH
T ss_pred CcEEEEEecCH
Confidence 46778877654
No 197
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=20.23 E-value=1.7e+02 Score=21.16 Aligned_cols=59 Identities=10% Similarity=0.047 Sum_probs=38.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCC--ceEEEEEcC-CC---CCccchHHHHHhHcCCCCCeEEEEec
Q 033514 50 YLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVDN-VL---PPTGAIMSTIYDEKKDEDGFLYVTYS 111 (117)
Q Consensus 50 flvp~~~tv~~~~~~lrk~L~l~~~--~slfl~Vn~-~~---p~~~~~l~~lY~~~kd~DGfLyv~Ys 111 (117)
..+++..|+.++...+++.++++++ -.|+.|-++ .. -..+.+|.++ .=.+|..|.|-..
T Consensus 156 ~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~---~L~~~Q~illE~r 220 (231)
T 3jyu_A 156 CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDA---GLYQGQVLVIEPQ 220 (231)
T ss_dssp EEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTT---TCCTTEEEEEEEC
T ss_pred EEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHh---CCCCCCEEEEEEe
Confidence 5679999999999999999999875 455555533 22 3455666553 1123444455443
Done!