BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033515
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T3K|A Chain A, Nmr Structure Of A Cdc25-Like Dual-Specificity Tyrosine
Phosphatase Of Arabidopsis Thaliana
Length = 152
Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 15/126 (11%)
Query: 1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI L+Q
Sbjct: 23 MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 82
Query: 59 -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
+VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 142
Query: 106 TDVPCK 111
+VPCK
Sbjct: 143 AEVPCK 148
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR-------GPTCAKRLANY 72
P ++DVRD DGHI G++ P + D+ +++ R G + N
Sbjct: 19 PAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNL 78
Query: 73 LDEVKEDTGINSIFVLERGFKGWEASGKPV 102
L G + L+ G W+A G P
Sbjct: 79 L----RSAGFEHVSELKGGLAAWKAIGGPT 104
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
Length = 141
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR-------GPTCAKRLANY 72
P ++DVRD DGHI G+ P + D+ +++ R G + N
Sbjct: 16 PAFTILDVRDRSTYNDGHIXGAXAXPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNL 75
Query: 73 LDEVKEDTGINSIFVLERGFKGWEASGKPV 102
L G + L+ G W+A G P
Sbjct: 76 L----RSAGFEHVSELKGGLAAWKAIGGPT 101
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR-------GPTCAKRLANY 72
P ++DVRD DGHI G+ P + D+ +++ R G + N
Sbjct: 12 PAFTILDVRDRSTYNDGHIXGAXAXPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNL 71
Query: 73 LDEVKEDTGINSIFVLERGFKGWEASGKPV 102
L G + L+ G W+A G P
Sbjct: 72 L----RSAGFEHVSELKGGLAAWKAIGGPT 97
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR-------GPTCAKRLANY 72
P ++DVRD DGHI G+ P + D+ +++ R G + N
Sbjct: 21 PAFTILDVRDRSTYNDGHIXGAXAXPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNL 80
Query: 73 LDEVKEDTGINSIFVLERGFKGWEASGKPV 102
L G + L+ G W+A G P
Sbjct: 81 L----RSAGFEHVSELKGGLAAWKAIGGPT 106
>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
pdb|3MZZ|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
Length = 103
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 16 LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-EVRGPTCA-----KRL 69
L+ +P + ++DVR DE + G+I + P D+ D + + E+ CA ++
Sbjct: 14 LESKP-VQIVDVRTDEETAXGYIPNAKLIPXDTIPDNLNSFNKNEIYYIVCAGGVRSAKV 72
Query: 70 ANYLDEVKEDTGINSIFVLERGFKGWEASG 99
YL E GI+++ V E G W G
Sbjct: 73 VEYL----EANGIDAVNV-EGGXHAWGDEG 97
>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible
Tyrosine Phosphatase, From Rhodopseudomonas Palustris
Cga009
Length = 139
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 19/115 (16%)
Query: 4 SISYISGSQLLSLKRR--PNIAVIDVRDD-ERSYDGHITGSLHY----------PSDSFT 50
SI ++ + ++L + ++ ++D+RD E DG I GS P +
Sbjct: 20 SIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGXLEFWIDPQSPYA 79
Query: 51 DKIFDLIQEVRGPT--CAKRLANYLD-EVKEDTGINSIFVLERGFKGWEASGKPV 102
IF QE + CA L + L + +D G+ + +E GF W +G P+
Sbjct: 80 KPIF---QEDKKFVFYCAGGLRSALAAKTAQDXGLKPVAHIEGGFGAWRDAGGPI 131
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 28.5 bits (62), Expect = 0.99, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 62 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK 111
P A+RL D G + + +L+ G GW +G + R +VP K
Sbjct: 76 APVAAQRL--------HDLGYSDVALLDGGLSGWRNAGGELFRDVNVPSK 117
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 24 VIDVRDDERSYDGHITGSLHYPSDSFT----DKIFD---LIQEVRGPTCAKRLANYLDEV 76
++D+RD + GH + H +D+ D FD ++ G +K A YL +
Sbjct: 23 LVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMXYHG-NSSKGAAQYLLQ- 80
Query: 77 KEDTGINSIFVLERGFKGWE 96
G + ++ ++ GF+ W+
Sbjct: 81 ---QGYDVVYSIDGGFEAWQ 97
>pdb|3MVK|A Chain A, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|B Chain B, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|C Chain C, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|D Chain D, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|E Chain E, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|F Chain F, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|G Chain G, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|H Chain H, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|I Chain I, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
pdb|3MVK|J Chain J, The Crystal Structure Of Fucu From Bifidobacterium Longum
To
Length = 148
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 35 DGHITGSLH------YPSDSFTDKIFDLIQEVRGPTCAKRLAN-YLDEVKE--DTGINSI 85
DGH G + +P D++ DK L ++V G T A + + Y +KE + G ++I
Sbjct: 48 DGHGGGEILKAILTVFPLDTYVDKPATLXEKVPGDTVATPIWDVYAGLIKEHDERGADAI 107
Query: 86 FVLERGFKGWEASGKPVCRCTDVPCKEENQQY 117
LER F +E + C V E+ QY
Sbjct: 108 GSLER-FAFYEQAKNAYC----VIASGESAQY 134
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 24 VIDVRDDERSYDGHITGSLHYPSDSFT----DKIFD---LIQEVRGPTCAKRLANYLDEV 76
++D+RD + GH + H +D+ D FD ++ G + +K A YL +
Sbjct: 23 LVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMCYHGNS-SKGAAQYLLQ- 80
Query: 77 KEDTGINSIFVLERGFKGWE 96
G + ++ ++ GF+ W+
Sbjct: 81 ---QGYDVVYSIDGGFEAWQ 97
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 24 VIDVRDDERSYDGHITGSLHYP 45
++DVR+D +GH++ ++H P
Sbjct: 390 ILDVRNDNEWNNGHLSQAVHVP 411
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 17 KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI------FDLIQEVRGPTCAKRLA 70
K PN+ ++DVR+ HI S++ P S D F+ + P AK L
Sbjct: 36 KHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELI 95
Query: 71 NY 72
Y
Sbjct: 96 FY 97
>pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
Length = 404
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 35 DGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSI--FVLERGF 92
D + SLH P+D D+I + ++ T + YL++ + G +I +L+
Sbjct: 227 DVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVN 286
Query: 93 KGWEASGKPVCRCTDVPCK 111
G E + + D PCK
Sbjct: 287 DGTEHAHQLAELLKDTPCK 305
>pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 35 DGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSI--FVLERGF 92
D + SLH P+D D+I + ++ T + YL++ + G +I +L+
Sbjct: 227 DVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVN 286
Query: 93 KGWEASGKPVCRCTDVPCK 111
G E + + D PCK
Sbjct: 287 DGTEHAHQLAELLKDTPCK 305
>pdb|2OEE|A Chain A, Yhea From Bacillus Subtilis
pdb|2OEE|B Chain B, Yhea From Bacillus Subtilis
Length = 117
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 48 SFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIF 86
+F D +DL +RG RL N DEV D F
Sbjct: 4 NFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRXF 42
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 24 VIDVRDDERSYDGHITGSLHYPSDSFTDKI 53
+IDVR+ G I GS++ P D D++
Sbjct: 506 LIDVREPNELKQGXIKGSINIPLDELRDRL 535
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,596,141
Number of Sequences: 62578
Number of extensions: 140969
Number of successful extensions: 321
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 29
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)