Query 033515
Match_columns 117
No_of_seqs 113 out of 1198
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00162 glpE thiosulfate sulf 99.9 6.1E-22 1.3E-26 120.6 7.2 97 4-105 3-106 (108)
2 cd01533 4RHOD_Repeat_2 Member 99.9 1.1E-21 2.4E-26 119.6 7.3 91 4-99 8-109 (109)
3 cd01518 RHOD_YceA Member of th 99.9 3.4E-21 7.4E-26 115.9 7.9 86 6-96 2-100 (101)
4 cd01527 RHOD_YgaP Member of th 99.8 3.4E-21 7.4E-26 115.4 5.8 92 5-102 1-99 (99)
5 PLN02160 thiosulfate sulfurtra 99.8 6E-20 1.3E-24 116.1 7.5 100 4-109 13-133 (136)
6 cd01534 4RHOD_Repeat_3 Member 99.8 4.1E-20 8.8E-25 110.1 6.2 83 8-96 1-94 (95)
7 cd01526 RHOD_ThiF Member of th 99.8 5.6E-20 1.2E-24 114.2 6.8 93 4-101 6-117 (122)
8 cd01535 4RHOD_Repeat_4 Member 99.8 8.6E-20 1.9E-24 116.5 6.8 89 13-106 2-98 (145)
9 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.7E-19 3.6E-24 107.3 6.2 85 7-96 1-95 (96)
10 cd01523 RHOD_Lact_B Member of 99.8 1.4E-19 3E-24 108.7 5.8 83 8-96 1-99 (100)
11 cd01528 RHOD_2 Member of the R 99.8 2.7E-19 5.8E-24 107.6 6.5 86 7-97 1-98 (101)
12 KOG1530 Rhodanese-related sulf 99.8 1.7E-19 3.6E-24 110.9 5.5 95 4-103 21-135 (136)
13 cd01525 RHOD_Kc Member of the 99.8 2.7E-19 5.9E-24 108.1 6.5 84 8-96 1-104 (105)
14 cd01524 RHOD_Pyr_redox Member 99.8 3.3E-19 7.2E-24 105.2 6.1 82 8-96 1-89 (90)
15 cd01521 RHOD_PspE2 Member of t 99.8 5.2E-19 1.1E-23 108.0 6.9 92 6-102 8-110 (110)
16 cd01447 Polysulfide_ST Polysul 99.8 3E-19 6.4E-24 107.4 5.4 87 8-99 1-103 (103)
17 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 1.7E-18 3.8E-23 112.4 9.2 95 4-102 34-162 (162)
18 cd01530 Cdc25 Cdc25 phosphatas 99.8 6.1E-19 1.3E-23 109.5 6.4 90 6-96 2-120 (121)
19 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 2.6E-18 5.6E-23 105.4 8.5 89 6-96 2-112 (113)
20 cd01531 Acr2p Eukaryotic arsen 99.8 3.2E-18 7E-23 104.9 8.7 92 5-98 1-112 (113)
21 PF00581 Rhodanese: Rhodanese- 99.8 1.1E-18 2.3E-23 106.1 5.8 90 9-98 1-113 (113)
22 PRK08762 molybdopterin biosynt 99.8 1.9E-18 4.1E-23 125.2 7.8 98 5-108 2-108 (376)
23 cd01519 RHOD_HSP67B2 Member of 99.8 1.4E-18 3E-23 105.1 5.9 83 9-96 2-105 (106)
24 cd01520 RHOD_YbbB Member of th 99.8 2E-18 4.4E-23 108.0 6.7 83 8-97 1-126 (128)
25 PRK01415 hypothetical protein; 99.7 9E-18 2E-22 115.0 7.7 91 4-99 110-213 (247)
26 cd01448 TST_Repeat_1 Thiosulfa 99.7 1.6E-17 3.5E-22 102.9 7.9 89 7-99 1-122 (122)
27 PRK09629 bifunctional thiosulf 99.7 1E-17 2.2E-22 127.3 8.3 98 6-107 9-132 (610)
28 PRK11493 sseA 3-mercaptopyruva 99.7 1.4E-17 3.1E-22 116.5 7.6 100 6-109 5-140 (281)
29 cd01529 4RHOD_Repeats Member o 99.7 8.9E-18 1.9E-22 100.1 5.2 73 19-96 10-95 (96)
30 smart00450 RHOD Rhodanese Homo 99.7 9.1E-18 2E-22 99.5 5.1 78 19-101 2-100 (100)
31 PRK00142 putative rhodanese-re 99.7 2.2E-17 4.8E-22 117.0 7.8 90 4-98 110-212 (314)
32 PRK05320 rhodanese superfamily 99.7 3E-17 6.4E-22 113.5 7.9 90 4-98 108-216 (257)
33 cd01449 TST_Repeat_2 Thiosulfa 99.7 2.5E-17 5.5E-22 101.4 6.6 84 8-96 1-117 (118)
34 PLN02723 3-mercaptopyruvate su 99.7 1.7E-17 3.7E-22 118.0 6.3 98 5-106 21-153 (320)
35 cd01522 RHOD_1 Member of the R 99.7 2E-17 4.4E-22 102.1 5.5 86 8-98 1-105 (117)
36 cd01532 4RHOD_Repeat_1 Member 99.7 5.6E-17 1.2E-21 96.1 5.4 77 16-96 5-91 (92)
37 cd00158 RHOD Rhodanese Homolog 99.7 4.5E-17 9.7E-22 95.0 4.6 79 13-96 2-89 (89)
38 PRK07878 molybdopterin biosynt 99.7 2.4E-16 5.2E-21 114.8 7.2 92 5-101 286-387 (392)
39 cd01445 TST_Repeats Thiosulfat 99.6 2.8E-16 6E-21 99.6 5.6 84 8-96 1-137 (138)
40 TIGR02981 phageshock_pspE phag 99.6 4.6E-16 9.9E-21 93.7 5.8 72 20-97 17-97 (101)
41 COG0607 PspE Rhodanese-related 99.6 8E-16 1.7E-20 93.2 6.3 88 13-105 12-109 (110)
42 COG2897 SseA Rhodanese-related 99.6 8.1E-16 1.7E-20 107.2 5.7 103 4-110 9-144 (285)
43 PLN02723 3-mercaptopyruvate su 99.6 1.2E-15 2.6E-20 108.6 6.2 93 8-105 192-318 (320)
44 PRK10287 thiosulfate:cyanide s 99.6 2E-15 4.2E-20 91.4 5.8 73 19-97 18-99 (104)
45 PRK07411 hypothetical protein; 99.6 2.2E-15 4.8E-20 109.6 7.0 92 4-101 280-385 (390)
46 PRK11493 sseA 3-mercaptopyruva 99.6 4.8E-15 1.1E-19 103.7 7.4 93 8-105 155-280 (281)
47 PRK09629 bifunctional thiosulf 99.6 6.7E-15 1.5E-19 112.1 6.6 94 7-105 148-272 (610)
48 TIGR03167 tRNA_sel_U_synt tRNA 99.5 1.2E-14 2.6E-19 102.9 6.6 79 21-105 2-122 (311)
49 cd01446 DSP_MapKP N-terminal r 99.5 3.4E-14 7.3E-19 89.2 7.0 92 7-99 1-128 (132)
50 PRK05597 molybdopterin biosynt 99.5 1.7E-14 3.6E-19 104.0 5.5 85 6-97 261-354 (355)
51 COG2897 SseA Rhodanese-related 99.5 8E-14 1.7E-18 97.3 7.5 96 6-106 156-284 (285)
52 PRK11784 tRNA 2-selenouridine 99.5 5.8E-14 1.3E-18 100.7 6.4 89 8-103 3-134 (345)
53 PRK05600 thiamine biosynthesis 99.5 5.6E-14 1.2E-18 101.7 4.7 83 6-93 271-369 (370)
54 COG1054 Predicted sulfurtransf 99.4 1.7E-12 3.7E-17 90.1 6.2 88 5-97 112-212 (308)
55 KOG3772 M-phase inducer phosph 99.3 4.4E-12 9.4E-17 89.2 6.1 93 4-100 154-278 (325)
56 KOG1529 Mercaptopyruvate sulfu 99.2 1.9E-11 4.1E-16 84.5 5.6 98 6-107 5-139 (286)
57 PRK01269 tRNA s(4)U8 sulfurtra 99.1 2.2E-10 4.8E-15 85.7 5.1 65 20-89 406-481 (482)
58 KOG2017 Molybdopterin synthase 99.0 2.7E-10 5.8E-15 80.9 4.1 89 6-98 317-419 (427)
59 COG5105 MIH1 Mitotic inducer, 98.6 1.7E-07 3.6E-12 66.2 6.4 100 4-104 240-364 (427)
60 KOG1529 Mercaptopyruvate sulfu 98.5 1.1E-07 2.4E-12 66.1 3.9 75 19-99 170-277 (286)
61 KOG3636 Uncharacterized conser 96.9 0.0039 8.5E-08 46.6 6.4 90 7-96 308-427 (669)
62 PRK00142 putative rhodanese-re 96.8 0.00028 6.1E-09 50.5 -0.2 51 7-58 15-65 (314)
63 KOG1717 Dual specificity phosp 96.7 0.003 6.5E-08 44.2 4.3 40 7-50 5-44 (343)
64 KOG1093 Predicted protein kina 96.0 0.00081 1.8E-08 51.3 -1.9 84 4-94 620-717 (725)
65 COG2603 Predicted ATPase [Gene 95.5 0.0075 1.6E-07 42.7 1.4 35 13-48 8-42 (334)
66 TIGR03167 tRNA_sel_U_synt tRNA 89.3 0.4 8.7E-06 34.5 2.8 35 5-39 135-172 (311)
67 PRK07688 thiamine/molybdopteri 73.2 3.1 6.8E-05 30.3 2.3 37 5-42 276-318 (339)
68 TIGR01244 conserved hypothetic 66.0 9.1 0.0002 23.9 3.0 28 6-33 13-40 (135)
69 PF04343 DUF488: Protein of un 62.5 6.6 0.00014 24.0 1.9 23 9-31 1-24 (122)
70 PF04273 DUF442: Putative phos 62.5 9.7 0.00021 23.1 2.6 27 6-32 13-39 (110)
71 PF08756 YfkB: YfkB-like domai 60.5 2.3 5E-05 27.1 -0.4 36 2-41 7-43 (153)
72 PF07879 PHB_acc_N: PHB/PHA ac 59.0 15 0.00032 20.1 2.6 28 5-32 17-45 (64)
73 PF13350 Y_phosphatase3: Tyros 56.7 6.8 0.00015 25.1 1.3 32 4-35 26-57 (164)
74 PRK09607 rps11p 30S ribosomal 50.4 63 0.0014 20.4 5.0 29 63-91 52-80 (132)
75 COG0529 CysC Adenylylsulfate k 49.2 31 0.00067 23.2 3.4 24 68-92 38-61 (197)
76 COG2518 Pcm Protein-L-isoaspar 49.0 20 0.00044 24.4 2.6 27 72-98 109-136 (209)
77 PF07755 DUF1611: Protein of u 44.7 91 0.002 22.6 5.5 79 10-98 76-157 (301)
78 TIGR01848 PHA_reg_PhaR polyhyd 42.0 36 0.00079 20.7 2.7 29 4-32 16-45 (107)
79 PRK11784 tRNA 2-selenouridine 40.7 36 0.00079 25.0 3.1 35 9-44 153-187 (345)
80 PF14606 Lipase_GDSL_3: GDSL-l 38.3 1.2E+02 0.0026 20.2 5.9 15 76-90 130-144 (178)
81 COG1891 Uncharacterized protei 38.2 1.3E+02 0.0027 20.4 6.6 27 5-32 5-31 (235)
82 PF15052 TMEM169: TMEM169 prot 36.4 9.1 0.0002 23.9 -0.5 18 84-101 100-117 (133)
83 PF08002 DUF1697: Protein of u 33.8 56 0.0012 20.5 2.8 20 70-89 21-41 (137)
84 PF08309 LVIVD: LVIVD repeat; 29.9 64 0.0014 15.9 2.1 13 19-31 20-32 (42)
85 COG0100 RpsK Ribosomal protein 29.4 1.5E+02 0.0033 18.7 5.0 55 62-116 59-123 (129)
86 PF09992 DUF2233: Predicted pe 28.7 61 0.0013 20.7 2.4 20 76-95 124-143 (170)
87 PRK02261 methylaspartate mutas 28.5 1.5E+02 0.0034 18.5 4.6 14 16-29 26-39 (137)
88 cd02071 MM_CoA_mut_B12_BD meth 28.2 1.2E+02 0.0025 18.4 3.5 17 75-91 72-88 (122)
89 PRK03094 hypothetical protein; 28.2 64 0.0014 18.5 2.1 23 9-31 9-31 (80)
90 PF07310 PAS_5: PAS domain; I 26.6 86 0.0019 19.4 2.8 26 6-33 26-51 (137)
91 CHL00041 rps11 ribosomal prote 26.5 1.3E+02 0.0029 18.4 3.5 30 63-92 55-84 (116)
92 PF01583 APS_kinase: Adenylyls 25.7 1E+02 0.0022 20.0 3.0 23 68-91 17-39 (156)
93 PRK13245 hetR heterocyst diffe 24.9 1.8E+02 0.0038 20.4 4.1 47 66-117 179-225 (299)
94 TIGR03628 arch_S11P archaeal r 24.7 1.6E+02 0.0034 18.1 3.5 30 62-91 44-73 (114)
95 PF02776 TPP_enzyme_N: Thiamin 24.3 1.3E+02 0.0028 19.3 3.4 21 75-95 9-29 (172)
96 PRK10113 cell division modulat 24.3 15 0.00033 20.4 -0.9 27 78-104 29-55 (80)
97 PF08479 POTRA_2: POTRA domain 24.2 1.3E+02 0.0029 16.3 4.0 47 38-84 8-54 (76)
98 TIGR03632 bact_S11 30S ribosom 22.0 1.8E+02 0.0039 17.5 3.4 30 63-92 42-71 (108)
99 PF02633 Creatininase: Creatin 21.7 1.2E+02 0.0026 20.7 2.9 17 37-53 72-88 (237)
100 cd07039 TPP_PYR_POX Pyrimidine 21.2 1.5E+02 0.0031 19.1 3.1 21 73-93 6-26 (164)
101 TIGR03096 nitroso_cyanin nitro 20.9 41 0.00089 21.3 0.5 11 34-44 123-133 (135)
102 KOG1352 Vacuolar H+-ATPase V1 20.9 1.2E+02 0.0026 23.3 2.9 21 77-98 339-359 (618)
103 COG4566 TtrR Response regulato 20.9 1.3E+02 0.0028 20.4 2.8 26 7-32 34-61 (202)
104 PRK10737 FKBP-type peptidyl-pr 20.7 55 0.0012 22.1 1.1 20 22-41 134-155 (196)
105 COG1654 BirA Biotin operon rep 20.5 1.5E+02 0.0033 16.8 2.7 24 66-90 32-55 (79)
106 PTZ00090 40S ribosomal protein 20.1 2.3E+02 0.005 19.7 3.9 43 62-104 161-210 (233)
No 1
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.87 E-value=6.1e-22 Score=120.57 Aligned_cols=97 Identities=20% Similarity=0.364 Sum_probs=81.2
Q ss_pred CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHH
Q 033515 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEV 76 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~ 76 (117)
.++.++++++.++++..+.+|||||++.||..+|||||+|+|...+..++..+... | .|.+ +..++..|+.
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~~~~~~~~~ivv~c~~g~~-s~~a~~~L~~- 80 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQADFDTPVMVMCYHGNS-SQGAAQYLLQ- 80 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHHHhcCCCCCEEEEeCCCCC-HHHHHHHHHH-
Confidence 46789999999998766789999999999999999999999998887777666544 4 4555 5566666666
Q ss_pred HHhCCCceEEEccccHHHHHhCCCCcccc
Q 033515 77 KEDTGINSIFVLERGFKGWEASGKPVCRC 105 (117)
Q Consensus 77 l~~~G~~~v~~l~gG~~~W~~~g~~~~~~ 105 (117)
.||++|++|.||+.+|...+.|++..
T Consensus 81 ---~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 81 ---QGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred ---CCchheEEecCCHHHHHhcCCCccCC
Confidence 99999999999999999999987753
No 2
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.86 E-value=1.1e-21 Score=119.63 Aligned_cols=91 Identities=22% Similarity=0.343 Sum_probs=75.4
Q ss_pred CCcccCHHHHHhhhcCC-CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh--------c-cChhhhHHHHHHH
Q 033515 4 SISYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--------V-RGPTCAKRLANYL 73 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~-~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~--------~-~g~~~a~~~~~~l 73 (117)
.++.++++++.++++.. +.+|||||++.||..||||||+|||...+.....++... | .|.+ +..++..|
T Consensus 8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~~~~~~~ivv~C~~G~r-s~~a~~~L 86 (109)
T cd01533 8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELAPDPRTPIVVNCAGRTR-SIIGAQSL 86 (109)
T ss_pred cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcCCCCCCeEEEECCCCch-HHHHHHHH
Confidence 67899999999988744 578999999999999999999999998887777666322 4 5666 55567777
Q ss_pred HHHHHhCCCce-EEEccccHHHHHhCC
Q 033515 74 DEVKEDTGINS-IFVLERGFKGWEASG 99 (117)
Q Consensus 74 ~~~l~~~G~~~-v~~l~gG~~~W~~~g 99 (117)
.. .||++ |++|+||+.+|..+|
T Consensus 87 ~~----~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 87 IN----AGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred HH----CCCCcceeEecCCHHHHHhcC
Confidence 66 99987 999999999998765
No 3
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.85 E-value=3.4e-21 Score=115.91 Aligned_cols=86 Identities=23% Similarity=0.470 Sum_probs=69.2
Q ss_pred cccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHH---HHHH---hhh------c-cChhhhHHHHHH
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK---IFDL---IQE------V-RGPTCAKRLANY 72 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~---~~~~---~~~------~-~g~~~a~~~~~~ 72 (117)
..|+++++.++++.++++|||||++.||..||||||+|||...+... +..+ .++ | +|.+ +..++..
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~r-s~~a~~~ 80 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGIR-CEKASAY 80 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCchh-HHHHHHH
Confidence 46899999999887788999999999999999999999999876542 2221 222 4 5777 5556666
Q ss_pred HHHHHHhCCCceEEEccccHHHHH
Q 033515 73 LDEVKEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 73 l~~~l~~~G~~~v~~l~gG~~~W~ 96 (117)
|.. +||++|+.|+||+.+|.
T Consensus 81 L~~----~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 81 LKE----RGFKNVYQLKGGILKYL 100 (101)
T ss_pred HHH----hCCcceeeechhHHHHh
Confidence 666 99999999999999996
No 4
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.84 E-value=3.4e-21 Score=115.44 Aligned_cols=92 Identities=23% Similarity=0.413 Sum_probs=74.4
Q ss_pred CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHHH
Q 033515 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEVK 77 (117)
Q Consensus 5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~l 77 (117)
+..|+++|+.++++.+ .+|||+|++++|..+|||||+|+|...+......+++. | .|.+ +..++..|.+
T Consensus 1 ~~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~~~~~~~~iv~~c~~g~~-s~~~~~~L~~-- 76 (99)
T cd01527 1 LTTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEGLPLVGANAIIFHCRSGMR-TQQNAERLAA-- 76 (99)
T ss_pred CCccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhcccccCCCCCCcEEEEeCCCch-HHHHHHHHHH--
Confidence 3578999999988754 88999999999999999999999998776543334433 4 4555 6666777777
Q ss_pred HhCCCceEEEccccHHHHHhCCCCc
Q 033515 78 EDTGINSIFVLERGFKGWEASGKPV 102 (117)
Q Consensus 78 ~~~G~~~v~~l~gG~~~W~~~g~~~ 102 (117)
.||++|++|.||+.+|...|+|+
T Consensus 77 --~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 77 --ISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred --cCCccEEEeeCCHHHHHHCcCCC
Confidence 99999999999999999988764
No 5
>PLN02160 thiosulfate sulfurtransferase
Probab=99.82 E-value=6e-20 Score=116.12 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=78.1
Q ss_pred CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCccccc--ccCCcc------chh-----HHHHH-Hhhh-------ccC
Q 033515 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGS--LHYPSD------SFT-----DKIFD-LIQE-------VRG 62 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga--~~ip~~------~l~-----~~~~~-~~~~-------~~g 62 (117)
.+..++++++.++++. +..|||||++.||..|||||| +|+|.. .+. ..... +.+. .+|
T Consensus 13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG 91 (136)
T PLN02160 13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSG 91 (136)
T ss_pred eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCc
Confidence 4788999999999874 468999999999999999999 899963 221 11112 1222 467
Q ss_pred hhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCC
Q 033515 63 PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP 109 (117)
Q Consensus 63 ~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~ 109 (117)
.+ |..++..|.+ .||++|+.|.||+.+|..+|+|+.+....|
T Consensus 92 ~R-S~~Aa~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 133 (136)
T PLN02160 92 AR-SLKATTELVA----AGYKKVRNKGGGYLAWVDHSFPINQEEEEP 133 (136)
T ss_pred HH-HHHHHHHHHH----cCCCCeeecCCcHHHHhhCCCCccccccCC
Confidence 77 6677777777 999999999999999999999999876554
No 6
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.81 E-value=4.1e-20 Score=110.10 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=66.1
Q ss_pred cCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh--h-------ccChhhhHHHHHHHHHH
Q 033515 8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ--E-------VRGPTCAKRLANYLDEV 76 (117)
Q Consensus 8 is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~--~-------~~g~~~a~~~~~~l~~~ 76 (117)
|+++++.+++... ++++||||++.||..||||||+|+|...+......+.. . ..|.+ +..++..|..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~~~~~~iv~~c~~G~r-s~~aa~~L~~- 78 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAPVRGARIVLADDDGVR-ADMTASWLAQ- 78 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcccCCCeEEEECCCCCh-HHHHHHHHHH-
Confidence 6889999988743 57899999999999999999999998877655444422 1 45666 5556666666
Q ss_pred HHhCCCceEEEccccHHHHH
Q 033515 77 KEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 77 l~~~G~~~v~~l~gG~~~W~ 96 (117)
+||+ |++|+||+.+|.
T Consensus 79 ---~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 79 ---MGWE-VYVLEGGLAAAL 94 (95)
T ss_pred ---cCCE-EEEecCcHHHhc
Confidence 9998 999999999995
No 7
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.81 E-value=5.6e-20 Score=114.20 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=75.2
Q ss_pred CCcccCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh----------h------c-cChhh
Q 033515 4 SISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ----------E------V-RGPTC 65 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~----------~------~-~g~~~ 65 (117)
.+..|+++++.+++++ .+++|||||++.||..+|||||+|||...+..+...+.. + | .|.+
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~r- 84 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGND- 84 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCCc-
Confidence 4678999999998875 578899999999999999999999999887765544422 1 4 5666
Q ss_pred hHHHHHHHHHHHHhCCC-ceEEEccccHHHHHhCCCC
Q 033515 66 AKRLANYLDEVKEDTGI-NSIFVLERGFKGWEASGKP 101 (117)
Q Consensus 66 a~~~~~~l~~~l~~~G~-~~v~~l~gG~~~W~~~g~~ 101 (117)
+..++..|.. .|| ++|++|+||+.+|..+..+
T Consensus 85 s~~aa~~L~~----~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 85 SQTAVRKLKE----LGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred HHHHHHHHHH----cCCccceeeecchHHHHHHHhCc
Confidence 6667777777 999 6899999999999876543
No 8
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.81 E-value=8.6e-20 Score=116.55 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=70.8
Q ss_pred HHhhhc-CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------cc-ChhhhHHHHHHHHHHHHhCCCce
Q 033515 13 LLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------VR-GPTCAKRLANYLDEVKEDTGINS 84 (117)
Q Consensus 13 ~~~~~~-~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~~-g~~~a~~~~~~l~~~l~~~G~~~ 84 (117)
+.+++. +.+++|||||++.+|..+|||||+|+|...|...+..+... |. |.. |..++..|.. .||++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~~l~~~~~vVv~c~~g~~-a~~aa~~L~~----~G~~~ 76 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALEKLPAAERYVLTCGSSLL-ARFAAADLAA----LTVKP 76 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHHhcCCCCCEEEEeCCChH-HHHHHHHHHH----cCCcC
Confidence 344554 33589999999999999999999999998888777666543 43 433 5555666666 99999
Q ss_pred EEEccccHHHHHhCCCCccccC
Q 033515 85 IFVLERGFKGWEASGKPVCRCT 106 (117)
Q Consensus 85 v~~l~gG~~~W~~~g~~~~~~~ 106 (117)
|++|+||+.+|...|+|+++..
T Consensus 77 v~~L~GG~~aW~~~g~pl~~~~ 98 (145)
T cd01535 77 VFVLEGGTAAWIAAGLPVESGE 98 (145)
T ss_pred eEEecCcHHHHHHCCCCcccCC
Confidence 9999999999999999998763
No 9
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.80 E-value=1.7e-19 Score=107.31 Aligned_cols=85 Identities=32% Similarity=0.498 Sum_probs=71.1
Q ss_pred ccCHHHHHhhhcC-CCeEEEecCCCCcccC--CcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHH
Q 033515 7 YISGSQLLSLKRR-PNIAVIDVRDDERSYD--GHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEV 76 (117)
Q Consensus 7 ~is~~e~~~~~~~-~~~~iiDvR~~~e~~~--ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~ 76 (117)
.|++.++.+++++ .+.+|||+|++.+|.. +|||||+|+|...+......+++. | .|.+ +..++..|..
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~~~~~~~ivv~c~~g~~-s~~a~~~l~~- 78 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGDLDRDRPVVVYCYHGNS-SAQLAQALRE- 78 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhhcCCCCCEEEEeCCCCh-HHHHHHHHHH-
Confidence 4789999998875 5689999999999999 999999999999888777666544 4 4555 6667777777
Q ss_pred HHhCCCceEEEccccHHHHH
Q 033515 77 KEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 77 l~~~G~~~v~~l~gG~~~W~ 96 (117)
.||++|++|+||+.+|.
T Consensus 79 ---~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 79 ---AGFTDVRSLAGGFEAWR 95 (96)
T ss_pred ---cCCceEEEcCCCHHHhc
Confidence 99999999999999995
No 10
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.80 E-value=1.4e-19 Score=108.66 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=66.2
Q ss_pred cCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhHH--------HHHHhhh------c-cChhhhHHHHH
Q 033515 8 ISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--------IFDLIQE------V-RGPTCAKRLAN 71 (117)
Q Consensus 8 is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~--------~~~~~~~------~-~g~~~a~~~~~ 71 (117)
|+++|+.++++. .+++|||||++.||..||||||+|+|...+... ...+++. | .|.+ +..++.
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~r-s~~aa~ 79 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEGS-SQFVAE 79 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCCc-HHHHHH
Confidence 688999998874 468899999999999999999999999876432 2333333 4 4666 667777
Q ss_pred HHHHHHHhCCCceEEEccccHHHHH
Q 033515 72 YLDEVKEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 72 ~l~~~l~~~G~~~v~~l~gG~~~W~ 96 (117)
.|.+ .||+ ++.|.||+.+|.
T Consensus 80 ~L~~----~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 80 LLAE----RGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHH----cCce-eEEeCCcHHhhc
Confidence 7777 9998 999999999995
No 11
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.79 E-value=2.7e-19 Score=107.62 Aligned_cols=86 Identities=23% Similarity=0.413 Sum_probs=70.7
Q ss_pred ccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh---h------c-cChhhhHHHHHHHH
Q 033515 7 YISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ---E------V-RGPTCAKRLANYLD 74 (117)
Q Consensus 7 ~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~---~------~-~g~~~a~~~~~~l~ 74 (117)
.|+++++.++++.+ +.+|||+|++.||..+|||||+|+|...+......+.. . | .|.+ |..++..|.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~~~~~~~vv~~c~~g~r-s~~~~~~l~ 79 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDSDNPDKDIVVLCHHGGR-SMQVAQWLL 79 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcccCCCCeEEEEeCCCch-HHHHHHHHH
Confidence 37899999988753 57899999999999999999999999888776666653 2 3 5666 556677776
Q ss_pred HHHHhCCCceEEEccccHHHHHh
Q 033515 75 EVKEDTGINSIFVLERGFKGWEA 97 (117)
Q Consensus 75 ~~l~~~G~~~v~~l~gG~~~W~~ 97 (117)
+ .||++|++|+||+.+|..
T Consensus 80 ~----~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 80 R----QGFENVYNLQGGIDAWSL 98 (101)
T ss_pred H----cCCccEEEecCCHHHHhh
Confidence 6 999999999999999965
No 12
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.7e-19 Score=110.94 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=76.6
Q ss_pred CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHH----HHHHhhh----------------ccCh
Q 033515 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK----IFDLIQE----------------VRGP 63 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~----~~~~~~~----------------~~g~ 63 (117)
.+..++.++++++++.++.++||||.++||..||||.++|||+...... -++|.+. .+|.
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~ 100 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASGV 100 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccCc
Confidence 5677889999999998789999999999999999999999999543321 1222221 5677
Q ss_pred hhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcc
Q 033515 64 TCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC 103 (117)
Q Consensus 64 ~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~ 103 (117)
| +-.+...|.. .||+||..+.||+.+|.+.+++..
T Consensus 101 R-s~~A~~~l~s----~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 101 R-SLKATKILVS----AGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred c-hhHHHHHHHH----cCcccccccCccHHHHHHccCCCC
Confidence 7 7677777777 999999999999999999887753
No 13
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.79 E-value=2.7e-19 Score=108.08 Aligned_cols=84 Identities=24% Similarity=0.371 Sum_probs=64.0
Q ss_pred cCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhH---HH------HHHhh--h------c-cChhhhH
Q 033515 8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD---KI------FDLIQ--E------V-RGPTCAK 67 (117)
Q Consensus 8 is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~---~~------~~~~~--~------~-~g~~~a~ 67 (117)
||+++++++++.+ +++|||||++.||..||||||+|+|...+.. .. ..+.. . | .|.+ +.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~~g~~-s~ 79 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLENYKGKIIVIVSHSHKH-AA 79 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHhhcCCeEEEEeCCCcc-HH
Confidence 6899999998743 6899999999999999999999999875421 11 11111 1 3 4555 55
Q ss_pred HHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515 68 RLANYLDEVKEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 68 ~~~~~l~~~l~~~G~~~v~~l~gG~~~W~ 96 (117)
.++..|.. +||++|++|+||+.+|+
T Consensus 80 ~~a~~L~~----~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 80 LFAAFLVK----CGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHH----cCCCCEEEEeCcHHHhc
Confidence 56666666 99999999999999995
No 14
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.79 E-value=3.3e-19 Score=105.17 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=66.8
Q ss_pred cCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHHHHhC
Q 033515 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEVKEDT 80 (117)
Q Consensus 8 is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~l~~~ 80 (117)
++++++.++++ ++.++||+|++++|..||||||+|+|...+..+...+... | .|.+ +..++..|++ .
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~~~~~~~~~vvl~c~~g~~-a~~~a~~L~~----~ 74 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNELPKDKEIIVYCAVGLR-GYIAARILTQ----N 74 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHHHhcCCCCcEEEEcCCChh-HHHHHHHHHH----C
Confidence 47899999885 5778999999999999999999999998887766655443 3 4444 5556666666 9
Q ss_pred CCceEEEccccHHHHH
Q 033515 81 GINSIFVLERGFKGWE 96 (117)
Q Consensus 81 G~~~v~~l~gG~~~W~ 96 (117)
|| +|++|+||+.+|+
T Consensus 75 G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 75 GF-KVKNLDGGYKTYS 89 (90)
T ss_pred CC-CEEEecCCHHHhc
Confidence 99 8999999999995
No 15
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.78 E-value=5.2e-19 Score=107.99 Aligned_cols=92 Identities=23% Similarity=0.381 Sum_probs=71.5
Q ss_pred cccCHHHHHhhhcC--CCeEEEecCCCCcccCCcccccccCCccchhH-HHHHHhhh------ccCh--hhhHHHHHHHH
Q 033515 6 SYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIFDLIQE------VRGP--TCAKRLANYLD 74 (117)
Q Consensus 6 ~~is~~e~~~~~~~--~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-~~~~~~~~------~~g~--~~a~~~~~~l~ 74 (117)
..++++++.++++. .+.+|||||++.+|..||||||+|+|...+.. ....+.+. |.+. ..+..++..|+
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~ 87 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICENATAKLDKEKLFVVYCDGPGCNGATKAALKLA 87 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhHhhhcCCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 57899999998874 35899999999999999999999999988763 23333333 4432 12556666666
Q ss_pred HHHHhCCCceEEEccccHHHHHhCCCCc
Q 033515 75 EVKEDTGINSIFVLERGFKGWEASGKPV 102 (117)
Q Consensus 75 ~~l~~~G~~~v~~l~gG~~~W~~~g~~~ 102 (117)
. +||+ |++|+||+.+|...|+|+
T Consensus 88 ~----~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 88 E----LGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred H----cCCe-EEEecCCHHHHHHCCCCC
Confidence 6 9995 999999999999998874
No 16
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.78 E-value=3e-19 Score=107.40 Aligned_cols=87 Identities=24% Similarity=0.464 Sum_probs=67.2
Q ss_pred cCHHHHHhhhcCCCeEEEecCCCCcc-cCCcccccccCCccchhHHHHH--------Hhhh------c-cChhhhHHHHH
Q 033515 8 ISGSQLLSLKRRPNIAVIDVRDDERS-YDGHITGSLHYPSDSFTDKIFD--------LIQE------V-RGPTCAKRLAN 71 (117)
Q Consensus 8 is~~e~~~~~~~~~~~iiDvR~~~e~-~~ghIpga~~ip~~~l~~~~~~--------~~~~------~-~g~~~a~~~~~ 71 (117)
|+++++.+++++++.+|||+|++.+| ..||||||+|+|...+..+... +.+. | .|.+ +..++.
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~-s~~~~~ 79 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGWR-SALAGK 79 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCCc-HHHHHH
Confidence 68899999888667899999999998 5799999999998776543221 2222 4 4555 556666
Q ss_pred HHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515 72 YLDEVKEDTGINSIFVLERGFKGWEASG 99 (117)
Q Consensus 72 ~l~~~l~~~G~~~v~~l~gG~~~W~~~g 99 (117)
.|.. +||++|++|+||+.+|..+|
T Consensus 80 ~l~~----~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 80 TLQD----MGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHH----cChHHhEeecCcHHHHhhcC
Confidence 6666 99999999999999997654
No 17
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.78 E-value=1.7e-18 Score=112.36 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=69.6
Q ss_pred CCcccCHHHHHhhhcCCCeEEEecCCCC----cccC---------CcccccccCCc---cchh--------HHHHHH---
Q 033515 4 SISYISGSQLLSLKRRPNIAVIDVRDDE----RSYD---------GHITGSLHYPS---DSFT--------DKIFDL--- 56 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~----e~~~---------ghIpga~~ip~---~~l~--------~~~~~~--- 56 (117)
....|+++|+.+++++++.+|||||+.. +|.. +|||||+|+|. ..+. ..+..+
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 5788999999999987778999999875 4544 49999999984 2222 112111
Q ss_pred hhh------c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCc
Q 033515 57 IQE------V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102 (117)
Q Consensus 57 ~~~------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~ 102 (117)
.++ | +|...+..++..|.+ +||++|++|+||+.+|..+|+|+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~----~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALA----YGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHh----cCCcceEEecCCHHHHHHcCCCC
Confidence 112 4 344335566666666 99999999999999999999885
No 18
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.78 E-value=6.1e-19 Score=109.51 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=68.3
Q ss_pred cccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCcc-chhHHHHH------Hhhh------c--cChh
Q 033515 6 SYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSD-SFTDKIFD------LIQE------V--RGPT 64 (117)
Q Consensus 6 ~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~-~l~~~~~~------~~~~------~--~g~~ 64 (117)
..|+++++.+++++ ++++|||||++.||..||||||+|||.. .+...... +.++ | +|.+
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~r 81 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSKR 81 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCcccc
Confidence 57999999999874 3689999999999999999999999986 46554332 2222 4 5666
Q ss_pred hhHHHHHHHHHHHH--------hCCCceEEEccccHHHHH
Q 033515 65 CAKRLANYLDEVKE--------DTGINSIFVLERGFKGWE 96 (117)
Q Consensus 65 ~a~~~~~~l~~~l~--------~~G~~~v~~l~gG~~~W~ 96 (117)
+..++..|+...+ .+||++|++|+||+.+|.
T Consensus 82 -s~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 82 -GPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred -HHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 6666777765100 139999999999999984
No 19
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.77 E-value=2.6e-18 Score=105.37 Aligned_cols=89 Identities=26% Similarity=0.484 Sum_probs=68.4
Q ss_pred cccCHHHHHhhhcCC------CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh----h--------cc--Chhh
Q 033515 6 SYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ----E--------VR--GPTC 65 (117)
Q Consensus 6 ~~is~~e~~~~~~~~------~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~----~--------~~--g~~~ 65 (117)
..|++++++++++.+ +++|||||++ ||..||||||+|||...+..+..++.+ . |. |.+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~r- 79 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGR- 79 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCcc-
Confidence 578999999999854 5889999999 999999999999999887765544433 1 43 455
Q ss_pred hHHHHHHHHHHHHhCCC--ceEEEccccHHHHH
Q 033515 66 AKRLANYLDEVKEDTGI--NSIFVLERGFKGWE 96 (117)
Q Consensus 66 a~~~~~~l~~~l~~~G~--~~v~~l~gG~~~W~ 96 (117)
+..++..+.+.|+..|| .++++|+||+.+|.
T Consensus 80 s~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 80 GPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred cHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 44555555555555786 68999999999994
No 20
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.77 E-value=3.2e-18 Score=104.91 Aligned_cols=92 Identities=37% Similarity=0.610 Sum_probs=68.5
Q ss_pred CcccCHHHHHhhhcC--CCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh--------h----c--cChhhhHH
Q 033515 5 ISYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ--------E----V--RGPTCAKR 68 (117)
Q Consensus 5 ~~~is~~e~~~~~~~--~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~--------~----~--~g~~~a~~ 68 (117)
++.|+++++.+++.. ++++|||||++ ||..+|||||+|+|...+.....++.+ . | .|.+ +..
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r-~~~ 78 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVR-GPS 78 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcc-hHH
Confidence 468999999999874 45789999999 999999999999999887655544421 1 4 3344 444
Q ss_pred HHHHHHHHHHh----CCCceEEEccccHHHHHhC
Q 033515 69 LANYLDEVKED----TGINSIFVLERGFKGWEAS 98 (117)
Q Consensus 69 ~~~~l~~~l~~----~G~~~v~~l~gG~~~W~~~ 98 (117)
++..+.+.|.. .|+++|++|+||+.+|...
T Consensus 79 aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 79 AARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred HHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 45544432221 4999999999999999764
No 21
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.76 E-value=1.1e-18 Score=106.08 Aligned_cols=90 Identities=27% Similarity=0.489 Sum_probs=64.0
Q ss_pred CHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccch--------hHHHH----HHhh----h------c-cChhh
Q 033515 9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF--------TDKIF----DLIQ----E------V-RGPTC 65 (117)
Q Consensus 9 s~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l--------~~~~~----~~~~----~------~-~g~~~ 65 (117)
|++|+++++++++++|||||++.+|..||||||+|||...+ ..... .... . | .|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 68999999977889999999999999999999999999443 11111 1111 1 3 45553
Q ss_pred hHHHHHHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515 66 AKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 98 (117)
Q Consensus 66 a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~ 98 (117)
...++..+...|..+||++|++|+||+.+|.++
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 333333333346669999999999999999763
No 22
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.76 E-value=1.9e-18 Score=125.16 Aligned_cols=98 Identities=23% Similarity=0.386 Sum_probs=80.4
Q ss_pred CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHh--hh-------ccChhhhHHHHHHHHH
Q 033515 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI--QE-------VRGPTCAKRLANYLDE 75 (117)
Q Consensus 5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~--~~-------~~g~~~a~~~~~~l~~ 75 (117)
++.|+++++.+++++ +.+|||||++.||..||||||+|+|...+..+..++. +. ..|.+ +..++..|..
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~IvvyC~~G~r-s~~aa~~L~~ 79 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRIETHLPDRDREIVLICASGTR-SAHAAATLRE 79 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhhcCCCCCeEEEEcCCCcH-HHHHHHHHHH
Confidence 678999999999874 5899999999999999999999999988776665542 22 34555 5566766666
Q ss_pred HHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515 76 VKEDTGINSIFVLERGFKGWEASGKPVCRCTDV 108 (117)
Q Consensus 76 ~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~ 108 (117)
.||++|++|+||+.+|...|+|++..+..
T Consensus 80 ----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~ 108 (376)
T PRK08762 80 ----LGYTRVASVAGGFSAWKDAGLPLERPRLL 108 (376)
T ss_pred ----cCCCceEeecCcHHHHHhcCCccccccCC
Confidence 99999999999999999999998876543
No 23
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.76 E-value=1.4e-18 Score=105.07 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=64.1
Q ss_pred CHHHHHhhhc-CCCeEEEecCCCCcccCCcccccccCCccchhHHH-------HH-H-----hhh------c-cChhhhH
Q 033515 9 SGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI-------FD-L-----IQE------V-RGPTCAK 67 (117)
Q Consensus 9 s~~e~~~~~~-~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~-------~~-~-----~~~------~-~g~~~a~ 67 (117)
+++++.++++ .++.+|||+|++.||..||||||+|+|...+.... .. + .+. | .|.+ +.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~-s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVR-SK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHH-HH
Confidence 6789999887 67799999999999999999999999987754211 11 1 111 3 4555 55
Q ss_pred HHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515 68 RLANYLDEVKEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 68 ~~~~~l~~~l~~~G~~~v~~l~gG~~~W~ 96 (117)
.++..|.. +||++|+.|+||+.+|.
T Consensus 81 ~~~~~l~~----~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 81 AAAELARS----LGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHH----cCCccceecCCcHHHHc
Confidence 66666666 99999999999999995
No 24
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.76 E-value=2e-18 Score=108.04 Aligned_cols=83 Identities=28% Similarity=0.527 Sum_probs=62.9
Q ss_pred cCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhH------------------------------HHH---
Q 033515 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD------------------------------KIF--- 54 (117)
Q Consensus 8 is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~------------------------------~~~--- 54 (117)
|+++|+.++++ .+++|||||++.||..||||||+|||...+.. ...
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAW 79 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 68999999987 67899999999999999999999999864321 111
Q ss_pred --HHhhh------c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh
Q 033515 55 --DLIQE------V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 97 (117)
Q Consensus 55 --~~~~~------~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~ 97 (117)
.+.+. | .|.+ |..++..|.. +|| +|++|+||+.+|+.
T Consensus 80 ~~~i~~~~~vvvyC~~~G~r-s~~a~~~L~~----~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 80 EARLERDPKLLIYCARGGMR-SQSLAWLLES----LGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HhccCCCCeEEEEeCCCCcc-HHHHHHHHHH----cCC-ceeEeCCcHHHHHh
Confidence 12222 5 3566 5566666665 999 69999999999964
No 25
>PRK01415 hypothetical protein; Validated
Probab=99.74 E-value=9e-18 Score=115.00 Aligned_cols=91 Identities=16% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHH---H---HHHhhh------c-cChhhhHHHH
Q 033515 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK---I---FDLIQE------V-RGPTCAKRLA 70 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~---~---~~~~~~------~-~g~~~a~~~~ 70 (117)
....|+|+++.+++++++++|||||++.||..||||||+|+|...+... . ..+.++ | +|.+ +..++
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGiR-s~kAa 188 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGIR-CEKST 188 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCChH-HHHHH
Confidence 3468999999999988889999999999999999999999998766532 2 122222 4 5777 66777
Q ss_pred HHHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515 71 NYLDEVKEDTGINSIFVLERGFKGWEASG 99 (117)
Q Consensus 71 ~~l~~~l~~~G~~~v~~l~gG~~~W~~~g 99 (117)
..|.+ .||++|+.|.||+.+|.+..
T Consensus 189 ~~L~~----~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 189 SLLKS----IGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred HHHHH----cCCCcEEEechHHHHHHHhc
Confidence 77777 99999999999999998754
No 26
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.73 E-value=1.6e-17 Score=102.91 Aligned_cols=89 Identities=26% Similarity=0.399 Sum_probs=66.9
Q ss_pred ccCHHHHHhhhcCCCeEEEecCCC-------CcccCCcccccccCCccchhHH-------------HHH-H-----hhh-
Q 033515 7 YISGSQLLSLKRRPNIAVIDVRDD-------ERSYDGHITGSLHYPSDSFTDK-------------IFD-L-----IQE- 59 (117)
Q Consensus 7 ~is~~e~~~~~~~~~~~iiDvR~~-------~e~~~ghIpga~~ip~~~l~~~-------------~~~-~-----~~~- 59 (117)
.++++++.++++.++.+|||+|++ .+|..+|||||+|+|...+... +.. + .+.
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDD 80 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence 378999999998767899999999 9999999999999998665321 111 1 111
Q ss_pred -----ccC-hhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515 60 -----VRG-PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 99 (117)
Q Consensus 60 -----~~g-~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g 99 (117)
|.+ ...+..++..|.. +||++|++|+||+.+|..+|
T Consensus 81 ~vv~~c~~g~~~a~~~~~~l~~----~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 81 TVVVYDDGGGFFAARAWWTLRY----FGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEEECCCCCccHHHHHHHHHH----cCCCCEEEecCCHHHHHhCc
Confidence 433 2335566666666 99999999999999998764
No 27
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.73 E-value=1e-17 Score=127.32 Aligned_cols=98 Identities=23% Similarity=0.322 Sum_probs=74.0
Q ss_pred cccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccch-----------------hHHHHHHhh--h------c
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF-----------------TDKIFDLIQ--E------V 60 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l-----------------~~~~~~~~~--~------~ 60 (117)
..|++++|.+++++++++|||+|++.+|..||||||+|+|.+.+ ...+.++.- + +
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 57999999999998889999999999999999999999985421 122222211 1 3
Q ss_pred c-ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515 61 R-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD 107 (117)
Q Consensus 61 ~-g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~ 107 (117)
. |...+..+++.|.. +||++|++|+||+.+|..+|+|+++...
T Consensus 89 ~~g~~~A~R~~w~L~~----~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 89 DEGGGWAGRFIWLLDV----IGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred CCCCchHHHHHHHHHH----cCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 2 32224455555555 9999999999999999999999987643
No 28
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.73 E-value=1.4e-17 Score=116.46 Aligned_cols=100 Identities=22% Similarity=0.351 Sum_probs=73.0
Q ss_pred cccCHHHHHhhhcCCCeEEEecCC----------CCcccCCcccccccCCccchhH-----------------HHHHHh-
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRD----------DERSYDGHITGSLHYPSDSFTD-----------------KIFDLI- 57 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~----------~~e~~~ghIpga~~ip~~~l~~-----------------~~~~~~- 57 (117)
..++++++.+.+++++++|||+|+ +.+|..||||||+|+|...+.. .+.++.
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 368999999999888899999997 5789999999999998654321 111110
Q ss_pred -hh------ccC-hhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCC
Q 033515 58 -QE------VRG-PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP 109 (117)
Q Consensus 58 -~~------~~g-~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~ 109 (117)
++ |.+ ...+..++..|.. +||++|++|+||+.+|..+|+|+++....+
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 140 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRT----FGVEKVSILAGGLAGWQRDDLLLEEGAVEL 140 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHH----hcCCcEEEcCCCHHHHHHcCCCccCCCCCC
Confidence 11 333 2224444555555 999999999999999999999998775443
No 29
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.72 E-value=8.9e-18 Score=100.11 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=55.3
Q ss_pred CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHH------hhh------c-cChhhhHHHHHHHHHHHHhCCCceE
Q 033515 19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL------IQE------V-RGPTCAKRLANYLDEVKEDTGINSI 85 (117)
Q Consensus 19 ~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~------~~~------~-~g~~~a~~~~~~l~~~l~~~G~~~v 85 (117)
+++.+|||||++.+|..+|||||+|+|...+......+ .+. | .|.+ +..++..|.. .||++|
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~-s~~~~~~l~~----~G~~~v 84 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSLL-ARFAAQELLA----LGGKPV 84 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChHH-HHHHHHHHHH----cCCCCE
Confidence 46789999999999999999999999987654322222 222 4 3454 5555666665 999999
Q ss_pred EEccccHHHHH
Q 033515 86 FVLERGFKGWE 96 (117)
Q Consensus 86 ~~l~gG~~~W~ 96 (117)
++|+||+.+|.
T Consensus 85 ~~l~GG~~~W~ 95 (96)
T cd01529 85 ALLDGGTSAWV 95 (96)
T ss_pred EEeCCCHHHhc
Confidence 99999999995
No 30
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.72 E-value=9.1e-18 Score=99.48 Aligned_cols=78 Identities=29% Similarity=0.602 Sum_probs=59.1
Q ss_pred CCCeEEEecCCCCcccCCcccccccCCccchhHHHH--------------HHhhh------c-cChhhhHHHHHHHHHHH
Q 033515 19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF--------------DLIQE------V-RGPTCAKRLANYLDEVK 77 (117)
Q Consensus 19 ~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~--------------~~~~~------~-~g~~~a~~~~~~l~~~l 77 (117)
+++++|||+|+..+|..+|||||+|+|...+..... ...+. | .|.+ +..++..|..
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~-a~~~~~~l~~-- 78 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNR-SAKAAWLLRE-- 78 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcH-HHHHHHHHHH--
Confidence 357899999999999999999999999876553211 11111 3 3444 5566666666
Q ss_pred HhCCCceEEEccccHHHHHhCCCC
Q 033515 78 EDTGINSIFVLERGFKGWEASGKP 101 (117)
Q Consensus 78 ~~~G~~~v~~l~gG~~~W~~~g~~ 101 (117)
+||++|++|+||+.+|...+.+
T Consensus 79 --~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 79 --LGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred --cCCCceEEecCCHHHHHhcCCC
Confidence 9999999999999999988754
No 31
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.72 E-value=2.2e-17 Score=116.97 Aligned_cols=90 Identities=17% Similarity=0.338 Sum_probs=73.1
Q ss_pred CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHh------hh-------ccChhhhHHHH
Q 033515 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI------QE-------VRGPTCAKRLA 70 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~------~~-------~~g~~~a~~~~ 70 (117)
....++++++.+++++++++|||||++.||..||||||+|+|...+......+. ++ .+|.+ +..++
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~R-s~~aa 188 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGIR-CEKAS 188 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCcH-HHHHH
Confidence 346799999999998788999999999999999999999999987764332221 11 46788 55667
Q ss_pred HHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515 71 NYLDEVKEDTGINSIFVLERGFKGWEAS 98 (117)
Q Consensus 71 ~~l~~~l~~~G~~~v~~l~gG~~~W~~~ 98 (117)
..|.+ .||++|+.|+||+.+|...
T Consensus 189 ~~L~~----~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 189 AWMKH----EGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHH----cCCCcEEEecchHHHHHHh
Confidence 77777 9999999999999999764
No 32
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.71 E-value=3e-17 Score=113.47 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=71.3
Q ss_pred CCcccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCccchhHH---HHHHh---hh-------ccChh
Q 033515 4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK---IFDLI---QE-------VRGPT 64 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~---~~~~~---~~-------~~g~~ 64 (117)
....+++.++.+++++ ++.+|||||++.||..||||||+|||...+..+ +.... ++ ..|.+
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~R 187 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGIR 187 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCHH
Confidence 3578999999998864 247899999999999999999999999876543 22221 12 45677
Q ss_pred hhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515 65 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 98 (117)
Q Consensus 65 ~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~ 98 (117)
+..++..|++ .||++|+.|.||+.+|.++
T Consensus 188 -s~~Aa~~L~~----~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 188 -CEKAAIHMQE----VGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred -HHHHHHHHHH----cCCcceEEeccCHHHHHHh
Confidence 6667777777 9999999999999999764
No 33
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.71 E-value=2.5e-17 Score=101.36 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=63.2
Q ss_pred cCHHHHHhhhcCCCeEEEecCCCCcccC-----------CcccccccCCccchhH-------------HHHHHh--hh--
Q 033515 8 ISGSQLLSLKRRPNIAVIDVRDDERSYD-----------GHITGSLHYPSDSFTD-------------KIFDLI--QE-- 59 (117)
Q Consensus 8 is~~e~~~~~~~~~~~iiDvR~~~e~~~-----------ghIpga~~ip~~~l~~-------------~~~~~~--~~-- 59 (117)
++++++.+++++.+++|||||+..||.. ||||||+|+|...+.. .+..+. +.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 5789999988766789999999999976 9999999999875431 111111 11
Q ss_pred ----cc-ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515 60 ----VR-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 60 ----~~-g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~ 96 (117)
|. |.+ +..++..|.. +||++|++|+||+.+|.
T Consensus 81 iv~yc~~g~~-s~~~~~~l~~----~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 81 VIVYCGSGVT-ACVLLLALEL----LGYKNVRLYDGSWSEWG 117 (118)
T ss_pred EEEECCcHHH-HHHHHHHHHH----cCCCCeeeeCChHHHhc
Confidence 43 455 5556666666 99999999999999995
No 34
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.71 E-value=1.7e-17 Score=117.99 Aligned_cols=98 Identities=26% Similarity=0.375 Sum_probs=71.6
Q ss_pred CcccCHHHHHhhhcCCCeEEEecC--------C-CCcccCCcccccccCCccchhHH-----------------HHHHh-
Q 033515 5 ISYISGSQLLSLKRRPNIAVIDVR--------D-DERSYDGHITGSLHYPSDSFTDK-----------------IFDLI- 57 (117)
Q Consensus 5 ~~~is~~e~~~~~~~~~~~iiDvR--------~-~~e~~~ghIpga~~ip~~~l~~~-----------------~~~~~- 57 (117)
-..|++++|.+++++++++|||+| . ..+|..||||||+|++...+... +.++.
T Consensus 21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi 100 (320)
T PLN02723 21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI 100 (320)
T ss_pred CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence 358999999999987789999996 2 26899999999999986543321 11111
Q ss_pred -hh-------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515 58 -QE-------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT 106 (117)
Q Consensus 58 -~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~ 106 (117)
+. ..|...+..+++.|.. +||++|++|+||+.+|..+|+|+++..
T Consensus 101 ~~~~~VVvY~~~g~~~a~r~~~~L~~----~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 101 ENKDGVVVYDGKGIFSAARVWWMFRV----FGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred CCCCEEEEEcCCCcchHHHHHHHHHH----cCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 01 2333324444455555 999999999999999999999998754
No 35
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.71 E-value=2e-17 Score=102.06 Aligned_cols=86 Identities=16% Similarity=0.327 Sum_probs=66.8
Q ss_pred cCHHHHHhhhcC-CCeEEEecCCCCccc-CCcccccccCCccchhH---------HHHHH-hhh------c-cChhhhHH
Q 033515 8 ISGSQLLSLKRR-PNIAVIDVRDDERSY-DGHITGSLHYPSDSFTD---------KIFDL-IQE------V-RGPTCAKR 68 (117)
Q Consensus 8 is~~e~~~~~~~-~~~~iiDvR~~~e~~-~ghIpga~~ip~~~l~~---------~~~~~-~~~------~-~g~~~a~~ 68 (117)
|+++++.+++++ ++.+|||||++.||. .||||||+|+|...+.. .+..+ .+. | .|.+ +..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~r-s~~ 79 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNR-SIA 79 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCcc-HHH
Confidence 688999999885 578999999999999 99999999999875431 11111 111 4 4555 666
Q ss_pred HHHHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515 69 LANYLDEVKEDTGINSIFVLERGFKGWEAS 98 (117)
Q Consensus 69 ~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~ 98 (117)
++..|.+ +||++|+.|.||+.+|...
T Consensus 80 aa~~L~~----~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 80 AAEAAAQ----AGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHH----CCCCeEEECcCceecCCCC
Confidence 7777777 9999999999999999664
No 36
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.69 E-value=5.6e-17 Score=96.08 Aligned_cols=77 Identities=29% Similarity=0.424 Sum_probs=57.7
Q ss_pred hhcCCCeEEEecCCCCcccCCcccccccCCccchhH-HHHHHhh-h------c-cChhh-hHHHHHHHHHHHHhCCCceE
Q 033515 16 LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIFDLIQ-E------V-RGPTC-AKRLANYLDEVKEDTGINSI 85 (117)
Q Consensus 16 ~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-~~~~~~~-~------~-~g~~~-a~~~~~~l~~~l~~~G~~~v 85 (117)
++++.+++|||+|++.||..+|||||+|||...+.. ....++. + | .|.+. +..++..|.+ .||++|
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~----~G~~~v 80 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSE----LGYTDV 80 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHH----cCccCE
Confidence 445567899999999999999999999999887653 2222322 2 3 44432 4555666666 999999
Q ss_pred EEccccHHHHH
Q 033515 86 FVLERGFKGWE 96 (117)
Q Consensus 86 ~~l~gG~~~W~ 96 (117)
++|+||+.+|.
T Consensus 81 ~~l~GG~~~W~ 91 (92)
T cd01532 81 ALLEGGLQGWR 91 (92)
T ss_pred EEccCCHHHHc
Confidence 99999999995
No 37
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.68 E-value=4.5e-17 Score=95.01 Aligned_cols=79 Identities=27% Similarity=0.546 Sum_probs=60.9
Q ss_pred HHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHH--HHHhhh------c-cChhhhHHHHHHHHHHHHhCCCc
Q 033515 13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI--FDLIQE------V-RGPTCAKRLANYLDEVKEDTGIN 83 (117)
Q Consensus 13 ~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~--~~~~~~------~-~g~~~a~~~~~~l~~~l~~~G~~ 83 (117)
+..+++.++..|||+|++.+|..+|||||+|+|...+.... ....+. + .|.+ +..++..|.. .||+
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~~~~~~~~~~~vv~~c~~~~~-a~~~~~~l~~----~G~~ 76 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERAALLELDKDKPIVVYCRSGNR-SARAAKLLRK----AGGT 76 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHHHhhccCCCCeEEEEeCCCch-HHHHHHHHHH----hCcc
Confidence 44555567899999999999999999999999998766542 222222 3 3444 6677777777 9999
Q ss_pred eEEEccccHHHHH
Q 033515 84 SIFVLERGFKGWE 96 (117)
Q Consensus 84 ~v~~l~gG~~~W~ 96 (117)
+|++|.||+.+|.
T Consensus 77 ~v~~l~gG~~~w~ 89 (89)
T cd00158 77 NVYNLEGGMLAWK 89 (89)
T ss_pred cEEEecCChhhcC
Confidence 9999999999994
No 38
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.66 E-value=2.4e-16 Score=114.77 Aligned_cols=92 Identities=24% Similarity=0.301 Sum_probs=73.9
Q ss_pred CcccCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhH--HHHHHhhh-------ccChhhhHHHHHHHH
Q 033515 5 ISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTD--KIFDLIQE-------VRGPTCAKRLANYLD 74 (117)
Q Consensus 5 ~~~is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~--~~~~~~~~-------~~g~~~a~~~~~~l~ 74 (117)
...|+++|+.++++. .+++|||||++.||..+|||||+|+|...+.. ....+++. ..|.+ |..++..|.
T Consensus 286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~~~~~l~~d~~iVvyC~~G~r-S~~aa~~L~ 364 (392)
T PRK07878 286 GSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGEALAKLPQDRTIVLYCKTGVR-SAEALAALK 364 (392)
T ss_pred CCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchhHHhhCCCCCcEEEEcCCChH-HHHHHHHHH
Confidence 467999999998874 35789999999999999999999999987654 34444433 45666 666777777
Q ss_pred HHHHhCCCceEEEccccHHHHHhCCCC
Q 033515 75 EVKEDTGINSIFVLERGFKGWEASGKP 101 (117)
Q Consensus 75 ~~l~~~G~~~v~~l~gG~~~W~~~g~~ 101 (117)
+ .||++|++|+||+.+|..+..+
T Consensus 365 ~----~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 365 K----AGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred H----cCCCcEEEecCcHHHHHHhcCC
Confidence 7 9999999999999999877543
No 39
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.65 E-value=2.8e-16 Score=99.62 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=59.7
Q ss_pred cCHHHHHhhhc----CCCeEEEecCCC--------CcccC------------CcccccccCCccchhHH-------H---
Q 033515 8 ISGSQLLSLKR----RPNIAVIDVRDD--------ERSYD------------GHITGSLHYPSDSFTDK-------I--- 53 (117)
Q Consensus 8 is~~e~~~~~~----~~~~~iiDvR~~--------~e~~~------------ghIpga~~ip~~~l~~~-------~--- 53 (117)
++++++.+.++ +++++|||+|.. .+|.. ||||||+|+|...+... .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 57899999987 467999999987 88987 99999999996543210 0
Q ss_pred HHHhhh---------------cc----ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515 54 FDLIQE---------------VR----GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 54 ~~~~~~---------------~~----g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~ 96 (117)
.++... +. |.. +..++..|. .+|+++|++|+||+.+|+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~-A~r~~~~l~----~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFT-ACHIALAAR----LCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchH-HHHHHHHHH----HcCCCCeEEeCCCHHHhh
Confidence 011111 32 333 334444444 499999999999999995
No 40
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.64 E-value=4.6e-16 Score=93.73 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=58.1
Q ss_pred CCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh--------c-cChhhhHHHHHHHHHHHHhCCCceEEEccc
Q 033515 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--------V-RGPTCAKRLANYLDEVKEDTGINSIFVLER 90 (117)
Q Consensus 20 ~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~--------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~g 90 (117)
....+||+|+++||..||||||+|||...+.....++..+ | .|.+ |..++..|.+ +||++|..+ |
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~~~~~~~vvlyC~~G~r-S~~aa~~L~~----~G~~~v~~~-G 90 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAVPDKNDTVKLYCNAGRQ-SGMAKDILLD----MGYTHAENA-G 90 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhCCCCCCeEEEEeCCCHH-HHHHHHHHHH----cCCCeEEec-C
Confidence 4567999999999999999999999998887766654322 4 4555 6667777776 999999885 9
Q ss_pred cHHHHHh
Q 033515 91 GFKGWEA 97 (117)
Q Consensus 91 G~~~W~~ 97 (117)
|+.+|..
T Consensus 91 G~~~~~~ 97 (101)
T TIGR02981 91 GIKDIAM 97 (101)
T ss_pred CHHHhhh
Confidence 9999965
No 41
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.63 E-value=8e-16 Score=93.24 Aligned_cols=88 Identities=24% Similarity=0.434 Sum_probs=71.2
Q ss_pred HHhhhcCCCeEEEecCCCCcccCCcccc-cccCCccchhHHHHHH--hhh------c-cChhhhHHHHHHHHHHHHhCCC
Q 033515 13 LLSLKRRPNIAVIDVRDDERSYDGHITG-SLHYPSDSFTDKIFDL--IQE------V-RGPTCAKRLANYLDEVKEDTGI 82 (117)
Q Consensus 13 ~~~~~~~~~~~iiDvR~~~e~~~ghIpg-a~~ip~~~l~~~~~~~--~~~------~-~g~~~a~~~~~~l~~~l~~~G~ 82 (117)
...+....+.++||||++.||..+|||+ ++|+|...+....... .++ | +|.+ +..++..|.. .||
T Consensus 12 ~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~~~~~~~ivv~C~~G~r-S~~aa~~L~~----~G~ 86 (110)
T COG0607 12 AALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLELPDDDPIVVYCASGVR-SAAAAAALKL----AGF 86 (110)
T ss_pred HHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccccCCCCeEEEEeCCCCC-hHHHHHHHHH----cCC
Confidence 3334445678999999999999999999 9999999988765554 222 4 5666 7788888887 999
Q ss_pred ceEEEccccHHHHHhCCCCcccc
Q 033515 83 NSIFVLERGFKGWEASGKPVCRC 105 (117)
Q Consensus 83 ~~v~~l~gG~~~W~~~g~~~~~~ 105 (117)
++++.+.||+.+|...+.++...
T Consensus 87 ~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 87 TNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred ccccccCCcHHHHHhcCCCcccC
Confidence 98889999999999999887653
No 42
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.62 E-value=8.1e-16 Score=107.25 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=75.1
Q ss_pred CCcccCHHHHHhhhcCC-----CeEEEecCCC--CcccCCcccccccCCccchhHHH----------HHHhhh-------
Q 033515 4 SISYISGSQLLSLKRRP-----NIAVIDVRDD--ERSYDGHITGSLHYPSDSFTDKI----------FDLIQE------- 59 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~-----~~~iiDvR~~--~e~~~ghIpga~~ip~~~l~~~~----------~~~~~~------- 59 (117)
....+++++|.+.+.++ +..+++++.. .+|..+|||||++++.+.+.... ..|.+.
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~ 88 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR 88 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 35678999999988755 5667777666 88999999999999876543211 111111
Q ss_pred ---------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCCC
Q 033515 60 ---------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPC 110 (117)
Q Consensus 60 ---------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~ 110 (117)
..+...|..+++.|+. +|+++|++|+||+.+|.++|+|+++.+..+.
T Consensus 89 ~d~tVVvYdd~~~~~A~ra~W~l~~----~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~ 144 (285)
T COG2897 89 NDDTVVVYDDGGGFFAARAWWLLRY----LGHENVRILDGGLPAWKAAGLPLETEPPEPP 144 (285)
T ss_pred CCCEEEEECCCCCeehHHHHHHHHH----cCCCceEEecCCHHHHHHcCCCccCCCCCCC
Confidence 2333335566666666 9999999999999999999999998655443
No 43
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.61 E-value=1.2e-15 Score=108.59 Aligned_cols=93 Identities=26% Similarity=0.301 Sum_probs=67.3
Q ss_pred cCHHHHHhhhcCCCeEEEecCCCCcc-----------cCCcccccccCCccchhH---------HHHH-H-----hhh--
Q 033515 8 ISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFTD---------KIFD-L-----IQE-- 59 (117)
Q Consensus 8 is~~e~~~~~~~~~~~iiDvR~~~e~-----------~~ghIpga~~ip~~~l~~---------~~~~-~-----~~~-- 59 (117)
++.+++...++.++++|||+|++.|| ..||||||+|||...+.. .+.. + .++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 57888988887677899999999888 569999999999854321 1111 1 111
Q ss_pred ----c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC-CCCcccc
Q 033515 60 ----V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRC 105 (117)
Q Consensus 60 ----~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~-g~~~~~~ 105 (117)
| +|.+ |..++..|.. +||++|++|+|||.+|... ..|++++
T Consensus 272 iv~yC~sG~~-A~~~~~~L~~----~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 272 IVASCGTGVT-ACILALGLHR----LGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred EEEECCcHHH-HHHHHHHHHH----cCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 3 4555 4444555555 9999999999999999875 5777754
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.60 E-value=2e-15 Score=91.39 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=58.2
Q ss_pred CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh--------c-cChhhhHHHHHHHHHHHHhCCCceEEEcc
Q 033515 19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--------V-RGPTCAKRLANYLDEVKEDTGINSIFVLE 89 (117)
Q Consensus 19 ~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~--------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~ 89 (117)
...-+|||+|++.||..+|||||+|+|...+..++..+... | .|.+ |..++..|.+ .||++|++ .
T Consensus 18 ~~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~~~~~~~IVlyC~~G~r-S~~aa~~L~~----~G~~~v~~-~ 91 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKLYCNAGRQ-SGQAKEILSE----MGYTHAEN-A 91 (104)
T ss_pred cCCCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcCCCCCCeEEEEeCCChH-HHHHHHHHHH----cCCCeEEe-c
Confidence 34567999999999999999999999998887766665322 4 4555 6667777776 99999977 6
Q ss_pred ccHHHHHh
Q 033515 90 RGFKGWEA 97 (117)
Q Consensus 90 gG~~~W~~ 97 (117)
||+.+|..
T Consensus 92 GG~~~~~~ 99 (104)
T PRK10287 92 GGLKDIAM 99 (104)
T ss_pred CCHHHHhh
Confidence 99999964
No 45
>PRK07411 hypothetical protein; Validated
Probab=99.60 E-value=2.2e-15 Score=109.65 Aligned_cols=92 Identities=23% Similarity=0.385 Sum_probs=71.9
Q ss_pred CCcccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhH-----HHHHHhhh-------ccChhhhHHH
Q 033515 4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----KIFDLIQE-------VRGPTCAKRL 69 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-----~~~~~~~~-------~~g~~~a~~~ 69 (117)
.+..|+++|+.++++.. +.+|||||++.||..||||||+|||...+.. .+.++.++ .+|.+ |..+
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l~~l~~d~~IVvyC~~G~R-S~~a 358 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKVKELLNGHRLIAHCKMGGR-SAKA 358 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHHhhcCCCCeEEEECCCCHH-HHHH
Confidence 56789999999988743 5789999999999999999999999887653 23333333 45676 6667
Q ss_pred HHHHHHHHHhCCCceEEEccccHHHHHhCCCC
Q 033515 70 ANYLDEVKEDTGINSIFVLERGFKGWEASGKP 101 (117)
Q Consensus 70 ~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~ 101 (117)
+..|++ .||++ +.|.||+.+|.++..|
T Consensus 359 a~~L~~----~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 359 LGILKE----AGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred HHHHHH----cCCCe-EEecchHHHHHHhcCC
Confidence 777777 99975 5799999999887554
No 46
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.59 E-value=4.8e-15 Score=103.75 Aligned_cols=93 Identities=20% Similarity=0.333 Sum_probs=66.5
Q ss_pred cCHHHHHhhhcCCCeEEEecCCCCccc-----------CCcccccccCCccchhHH-----HHHH---------hhh---
Q 033515 8 ISGSQLLSLKRRPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFTDK-----IFDL---------IQE--- 59 (117)
Q Consensus 8 is~~e~~~~~~~~~~~iiDvR~~~e~~-----------~ghIpga~~ip~~~l~~~-----~~~~---------~~~--- 59 (117)
.+.+++...++..+++|||+|++.||. .||||||+|+|...+... ..++ ..+
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~i 234 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPI 234 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCE
Confidence 344566666665678999999999984 699999999997654320 1122 111
Q ss_pred ---c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCcccc
Q 033515 60 ---V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC 105 (117)
Q Consensus 60 ---~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~ 105 (117)
| +|.+ |..++..|.. +||++|++|+|||.+|.. .++|++++
T Consensus 235 i~yC~~G~~-A~~~~~~l~~----~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 235 IASCGSGVT-AAVVVLALAT----LDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred EEECCcHHH-HHHHHHHHHH----cCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 4 4666 4455555555 999999999999999987 68898754
No 47
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.56 E-value=6.7e-15 Score=112.10 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=68.6
Q ss_pred ccCHHHHHhhhcCCCeEEEecCCCCccc--------CCcccccccCCccchh---------HHHHHHh------hh----
Q 033515 7 YISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSFT---------DKIFDLI------QE---- 59 (117)
Q Consensus 7 ~is~~e~~~~~~~~~~~iiDvR~~~e~~--------~ghIpga~~ip~~~l~---------~~~~~~~------~~---- 59 (117)
.++.+++.+.+++++++|||+|+++||. .||||||+|||...+. ..+..+- .+
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV 227 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI 227 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence 5788999998887788999999999994 6999999999975321 1121111 11
Q ss_pred --c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC-CCCcccc
Q 033515 60 --V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRC 105 (117)
Q Consensus 60 --~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~-g~~~~~~ 105 (117)
| +|.+ |..++..|+. +||++|++|+|||.+|... +.|+++.
T Consensus 228 vYC~sG~r-Aa~~~~~L~~----lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 228 THCQTHHR-SGFTYLVAKA----LGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred EECCCChH-HHHHHHHHHH----cCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 3 4555 4444555554 9999999999999999875 6787754
No 48
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.55 E-value=1.2e-14 Score=102.91 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=58.1
Q ss_pred CeEEEecCCCCcccCCcccccccCCccchh------------------------------HHHHHH----hhh------c
Q 033515 21 NIAVIDVRDDERSYDGHITGSLHYPSDSFT------------------------------DKIFDL----IQE------V 60 (117)
Q Consensus 21 ~~~iiDvR~~~e~~~ghIpga~~ip~~~l~------------------------------~~~~~~----~~~------~ 60 (117)
+..|||||++.||..||||||+|||+.... ..+.++ ... |
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 457999999999999999999999995421 111111 111 4
Q ss_pred --cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcccc
Q 033515 61 --RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105 (117)
Q Consensus 61 --~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~ 105 (117)
.|.+ |..++..|.. +|| +|++|+||+.+|...+.+....
T Consensus 82 ~~gG~R-S~~aa~~L~~----~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 82 WRGGMR-SGSLAWLLAQ----IGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred CCCChH-HHHHHHHHHH----cCC-CEEEecChHHHHHHhhhhhhhc
Confidence 3556 7677777777 999 6999999999999887655543
No 49
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.53 E-value=3.4e-14 Score=89.21 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=62.4
Q ss_pred ccCHHHHHhhhcC--CCeEEEecCCCCcccCCcccccccCCccchhHHH------------------HHHh---hh----
Q 033515 7 YISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI------------------FDLI---QE---- 59 (117)
Q Consensus 7 ~is~~e~~~~~~~--~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~------------------~~~~---~~---- 59 (117)
.|+++++.++++. ++++|||||+..+|..+|||||+|+|...+.... ..+. ..
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VVv 80 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGESLAVVV 80 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCCCeEEE
Confidence 4799999999974 4789999999999999999999999987533110 0111 11
Q ss_pred --ccCh-----hhhHHHHHHHHHHHHh--CCCceEEEccccHHHHHhCC
Q 033515 60 --VRGP-----TCAKRLANYLDEVKED--TGINSIFVLERGFKGWEASG 99 (117)
Q Consensus 60 --~~g~-----~~a~~~~~~l~~~l~~--~G~~~v~~l~gG~~~W~~~g 99 (117)
..+. .++..+...+. .|.. .++.+|++|+||+.+|....
T Consensus 81 Yd~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~v~~L~GG~~~w~~~~ 128 (132)
T cd01446 81 YDESSSDRERLREDSTAESVLG-KLLRKLQEGCSVYLLKGGFEQFSSEF 128 (132)
T ss_pred EeCCCcchhhccccchHHHHHH-HHHHhcCCCceEEEEcchHHHHHhhC
Confidence 1221 12223333333 3444 36678999999999997753
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.52 E-value=1.7e-14 Score=103.98 Aligned_cols=85 Identities=18% Similarity=0.330 Sum_probs=65.1
Q ss_pred cccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHH--Hhhh-------ccChhhhHHHHHHHHHH
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFD--LIQE-------VRGPTCAKRLANYLDEV 76 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~--~~~~-------~~g~~~a~~~~~~l~~~ 76 (117)
..++++++.... .+.+|||||++.||..+|||||+|||...+...... +.+. ..|.+ +..++..|.+
T Consensus 261 ~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~~~~~~~~~IvvyC~~G~r-S~~Aa~~L~~- 336 (355)
T PRK05597 261 EVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANPPSVSAGDEVVVYCAAGVR-SAQAVAILER- 336 (355)
T ss_pred cccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhccccccCCCCCeEEEEcCCCHH-HHHHHHHHHH-
Confidence 467778888553 357899999999999999999999998876543211 2222 45566 6667777776
Q ss_pred HHhCCCceEEEccccHHHHHh
Q 033515 77 KEDTGINSIFVLERGFKGWEA 97 (117)
Q Consensus 77 l~~~G~~~v~~l~gG~~~W~~ 97 (117)
.||++|++|+||+.+|.+
T Consensus 337 ---~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 337 ---AGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred ---cCCCCEEEecCcHHHHhh
Confidence 999999999999999965
No 51
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.50 E-value=8e-14 Score=97.30 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=70.0
Q ss_pred cccCHHHHHhhhcCCCeEEEecCCCCcccC----------CcccccccCCccchhH---------HHHHHhhh-------
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYD----------GHITGSLHYPSDSFTD---------KIFDLIQE------- 59 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~----------ghIpga~~ip~~~l~~---------~~~~~~~~------- 59 (117)
...+.++++..++.....|||+|++.+|.. ||||||+|||.+.+.. .+..+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~ 235 (285)
T COG2897 156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDK 235 (285)
T ss_pred ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCC
Confidence 345667788888777888999999999988 9999999999987654 22222211
Q ss_pred ------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC-CCCccccC
Q 033515 60 ------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRCT 106 (117)
Q Consensus 60 ------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~-g~~~~~~~ 106 (117)
.+|.+++ ...-.|+. +|+.++++|+|+|..|... +.|+++++
T Consensus 236 ~vI~yCgsG~~As-~~~~al~~----lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 236 EVIVYCGSGVRAS-VTWLALAE----LGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred CEEEEcCCchHHH-HHHHHHHH----hCCCCcccccChHHHhhcCCCCccccCC
Confidence 4566633 33334444 8888889999999999875 56887764
No 52
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.49 E-value=5.8e-14 Score=100.67 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=64.7
Q ss_pred cCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhH------------------------------HHH---
Q 033515 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD------------------------------KIF--- 54 (117)
Q Consensus 8 is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~------------------------------~~~--- 54 (117)
....++.+++. .+.+|||||++.||..||||||+|+|...... ...
T Consensus 3 ~~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~ 81 (345)
T PRK11784 3 PDAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW 81 (345)
T ss_pred CcHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence 34677887765 57899999999999999999999999954211 111
Q ss_pred -HHh-hh------c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcc
Q 033515 55 -DLI-QE------V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC 103 (117)
Q Consensus 55 -~~~-~~------~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~ 103 (117)
.++ +. | .|.+ |..++..|.. +|| +|+.|+||+.+|...+.+..
T Consensus 82 ~~~~~~~~~ivvyC~rgG~R-S~~aa~~L~~----~G~-~v~~L~GG~~awr~~~~~~~ 134 (345)
T PRK11784 82 ADFPRANPRGLLYCWRGGLR-SGSVQQWLKE----AGI-DVPRLEGGYKAYRRFVIDTL 134 (345)
T ss_pred HhcccCCCeEEEEECCCChH-HHHHHHHHHH----cCC-CcEEEcCCHHHHHHhhHHHH
Confidence 111 12 5 3566 6666777766 999 58999999999988765443
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.46 E-value=5.6e-14 Score=101.68 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=66.1
Q ss_pred cccCHHHHHhhhcCCCeEEEecCCCCcccCCccc---ccccCCccchhHH------HHHHhhh------ccChhhhHHHH
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHIT---GSLHYPSDSFTDK------IFDLIQE------VRGPTCAKRLA 70 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIp---ga~~ip~~~l~~~------~~~~~~~------~~g~~~a~~~~ 70 (117)
.+++++++.+++++++.+|||||++.||..+||| ||+|||...+... ...+++. .+|.+ |..++
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l~~~~~~~Ivv~C~sG~R-S~~Aa 349 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHALSPIDGDNVVVYCASGIR-SADFI 349 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhccccCCCcEEEECCCChh-HHHHH
Confidence 3688999999988667899999999999999998 5999999887532 2222222 56777 66777
Q ss_pred HHHHHHHHhCCCce-EEEccccHH
Q 033515 71 NYLDEVKEDTGINS-IFVLERGFK 93 (117)
Q Consensus 71 ~~l~~~l~~~G~~~-v~~l~gG~~ 93 (117)
..|++ .||++ |+.|.||+.
T Consensus 350 ~~L~~----~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 350 EKYSH----LGHELTLHNLPGGVN 369 (370)
T ss_pred HHHHH----cCCCCceEEeccccC
Confidence 87777 99986 999999975
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.36 E-value=1.7e-12 Score=90.12 Aligned_cols=88 Identities=23% Similarity=0.416 Sum_probs=72.2
Q ss_pred CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------------ccChhhhHHHHH
Q 033515 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------------VRGPTCAKRLAN 71 (117)
Q Consensus 5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------------~~g~~~a~~~~~ 71 (117)
-..|+|.++.+++.++++++||+|+..||+-||..||++.+..++....+++... ..|+||- .+..
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGIRCE-Kas~ 190 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGIRCE-KASA 190 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCceeeh-hhHH
Confidence 4689999999999999999999999999999999999999998877644443322 4568855 5566
Q ss_pred HHHHHHHhCCCceEEEccccHHHHHh
Q 033515 72 YLDEVKEDTGINSIFVLERGFKGWEA 97 (117)
Q Consensus 72 ~l~~~l~~~G~~~v~~l~gG~~~W~~ 97 (117)
++.. .||++|+.|+||+-.+.+
T Consensus 191 ~m~~----~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 191 WMKE----NGFKEVYHLEGGILKYLE 212 (308)
T ss_pred HHHH----hcchhhhcccchHHHHhh
Confidence 6666 999999999999987654
No 55
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=4.4e-12 Score=89.19 Aligned_cols=93 Identities=23% Similarity=0.367 Sum_probs=65.4
Q ss_pred CCcccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCccchhHHH----HHHhhh--------------
Q 033515 4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI----FDLIQE-------------- 59 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~----~~~~~~-------------- 59 (117)
.+..|+++.|+.++++ ...+|||+|-+.||..|||+||+||+.......+ ......
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefSq 233 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFSQ 233 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeecc
Confidence 6789999999999983 1367999999999999999999999987544321 111110
Q ss_pred ccChhhhHHHHHHHHH---HH-----HhCCCceEEEccccHHHHHhCCC
Q 033515 60 VRGPTCAKRLANYLDE---VK-----EDTGINSIFVLERGFKGWEASGK 100 (117)
Q Consensus 60 ~~g~~~a~~~~~~l~~---~l-----~~~G~~~v~~l~gG~~~W~~~g~ 100 (117)
.+|.+ ++..|+. .+ -.+-|..+++|+||+..|...-.
T Consensus 234 ~RGP~----mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~ 278 (325)
T KOG3772|consen 234 ERGPK----MARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP 278 (325)
T ss_pred ccCHH----HHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc
Confidence 34444 4444442 11 12466789999999999977644
No 56
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.23 E-value=1.9e-11 Score=84.53 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=73.3
Q ss_pred cccCHHHHHhhhcCCCeEEEecC---------CCCcccCCcccccccCCccchhHHH----------HHHhhh-------
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVR---------DDERSYDGHITGSLHYPSDSFTDKI----------FDLIQE------- 59 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR---------~~~e~~~ghIpga~~ip~~~l~~~~----------~~~~~~------- 59 (117)
..+++..+.+.+.+.+++|||+. ...||...|||||.+++.+.+.... ..|...
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 35788899998887789999993 2367888999999999887764211 112111
Q ss_pred ---------c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515 60 ---------V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD 107 (117)
Q Consensus 60 ---------~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~ 107 (117)
. .|...|..+++.++- +|+++|.+|+||+.+|+..|+|+.+...
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~W~fr~----fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVWWTFRV----FGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHHHHHHH----hCccEEEEecCcHHHHHHcCCccccccc
Confidence 2 344445566665555 9999999999999999999999998765
No 57
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.06 E-value=2.2e-10 Score=85.66 Aligned_cols=65 Identities=26% Similarity=0.350 Sum_probs=54.0
Q ss_pred CCeEEEecCCCCcccCCcccc----cccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHHHHhCCCceEEEc
Q 033515 20 PNIAVIDVRDDERSYDGHITG----SLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEVKEDTGINSIFVL 88 (117)
Q Consensus 20 ~~~~iiDvR~~~e~~~ghIpg----a~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l 88 (117)
++.++||||+++||..+|||| |+|+|...+......++++ .+|.+ |..++..|.+ .||++|+++
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~~~l~~~~~iivyC~~G~r-S~~aa~~L~~----~G~~nv~~y 480 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQFGDLDQSKTYLLYCDRGVM-SRLQALYLRE----QGFSNVKVY 480 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHHhhcCCCCeEEEECCCCHH-HHHHHHHHHH----cCCccEEec
Confidence 578999999999999999999 9999999887766666544 46777 7777887777 999999876
Q ss_pred c
Q 033515 89 E 89 (117)
Q Consensus 89 ~ 89 (117)
.
T Consensus 481 ~ 481 (482)
T PRK01269 481 R 481 (482)
T ss_pred C
Confidence 4
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.02 E-value=2.7e-10 Score=80.90 Aligned_cols=89 Identities=20% Similarity=0.254 Sum_probs=70.6
Q ss_pred cccCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhHHHH-----HHhhh--------ccChhhhHHHHH
Q 033515 6 SYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-----DLIQE--------VRGPTCAKRLAN 71 (117)
Q Consensus 6 ~~is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~-----~~~~~--------~~g~~~a~~~~~ 71 (117)
.+||..|++.+++. ...++||||++.||.-.|+|.|+|||+..+..... .+... .+|+. |+.+++
T Consensus 317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGNd-SQ~Av~ 395 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGND-SQRAVR 395 (427)
T ss_pred hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCCc-hHHHHH
Confidence 57889999999985 67899999999999999999999999988876554 11111 57887 888888
Q ss_pred HHHHHHHhCCCceEEEccccHHHHHhC
Q 033515 72 YLDEVKEDTGINSIFVLERGFKGWEAS 98 (117)
Q Consensus 72 ~l~~~l~~~G~~~v~~l~gG~~~W~~~ 98 (117)
.|+. ..+...|+.+.||+.+|..+
T Consensus 396 ~Lre---~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 396 ILRE---KFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred HHHh---hCCchhhhhhhhHHHHHHHh
Confidence 8875 23334688889999999765
No 59
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.59 E-value=1.7e-07 Score=66.24 Aligned_cols=100 Identities=22% Similarity=0.258 Sum_probs=68.7
Q ss_pred CCcccCHHHHHhhhcCC------CeEEEecCCCCcccCCcccccccCCccc-hhHHHHHHhhh----------ccChhhh
Q 033515 4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDS-FTDKIFDLIQE----------VRGPTCA 66 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~------~~~iiDvR~~~e~~~ghIpga~~ip~~~-l~~~~~~~~~~----------~~g~~~a 66 (117)
.+++|+++.++.+++.. +-.|||+|-+.||..|||-+|+||.... |....-.-+.. -+..+ +
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~~F~hkplThp~aLifHCEfSshR-a 318 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGLLFRHKPLTHPRALIFHCEFSSHR-A 318 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHHHHHHhccccCceeEEEEeeccccc-c
Confidence 46899999999998831 3469999999999999999999998753 44332211111 23445 5
Q ss_pred HHHHHHHHH--HHHh------CCCceEEEccccHHHHHhCCCCccc
Q 033515 67 KRLANYLDE--VKED------TGINSIFVLERGFKGWEASGKPVCR 104 (117)
Q Consensus 67 ~~~~~~l~~--~l~~------~G~~~v~~l~gG~~~W~~~g~~~~~ 104 (117)
..++.+|+. .+++ +=|+.|++|+||+.++......++.
T Consensus 319 P~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~p~lCd 364 (427)
T COG5105 319 PRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLCD 364 (427)
T ss_pred hhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcCccccC
Confidence 566666655 1111 2356899999999998776554443
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.52 E-value=1.1e-07 Score=66.08 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=53.2
Q ss_pred CCCeEEEecCCCCcc-----------cCCcccccccCCccchhHH------HHHHhhh----------------ccChhh
Q 033515 19 RPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFTDK------IFDLIQE----------------VRGPTC 65 (117)
Q Consensus 19 ~~~~~iiDvR~~~e~-----------~~ghIpga~~ip~~~l~~~------~~~~~~~----------------~~g~~~ 65 (117)
.+++..||.|...+| ..||||||+|+|...+-.. ..++... ..|..
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gis- 248 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGIS- 248 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchh-
Confidence 357899999998776 5699999999999865421 1222221 35666
Q ss_pred hHHHHHHHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515 66 AKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 99 (117)
Q Consensus 66 a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g 99 (117)
+...+-.+.+ .| .++.+++|++..|...+
T Consensus 249 a~~i~~al~r----~g-~~~~lYdGS~~Ew~~~~ 277 (286)
T KOG1529|consen 249 ASIIALALER----SG-PDAKLYDGSWTEWALRA 277 (286)
T ss_pred HHHHHHHHHh----cC-CCcceecccHHHHhhcC
Confidence 4445555555 89 78999999999997643
No 61
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=96.91 E-value=0.0039 Score=46.57 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=55.1
Q ss_pred ccCHHHHHhhhc--CC--CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-----------------------
Q 033515 7 YISGSQLLSLKR--RP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE----------------------- 59 (117)
Q Consensus 7 ~is~~e~~~~~~--~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~----------------------- 59 (117)
.|+..|+...-+ .+ ...|||+|+.+.|..||+..|.|.+-..+.+....|...
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHl 387 (669)
T KOG3636|consen 308 PISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHL 387 (669)
T ss_pred chhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceE
Confidence 345555544322 22 346999999999999999999998655433211111110
Q ss_pred ---ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515 60 ---VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 96 (117)
Q Consensus 60 ---~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~ 96 (117)
.+|...-......+.+++..-+-..|..+.||+....
T Consensus 388 cfmGsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 388 CFMGSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred EEeccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 4444323344444444555567667999999998765
No 62
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.80 E-value=0.00028 Score=50.50 Aligned_cols=51 Identities=6% Similarity=-0.068 Sum_probs=41.6
Q ss_pred ccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh
Q 033515 7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ 58 (117)
Q Consensus 7 ~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~ 58 (117)
.-+++++.+.+. ....++|+|....|+.+||||++++|...+..+..++..
T Consensus 15 i~~~~~~~~~l~-~~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~ 65 (314)
T PRK00142 15 IEDPEAFRDEHL-ALCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKA 65 (314)
T ss_pred CCCHHHHHHHHH-HHHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhh
Confidence 446778888776 356799999999999999999999999878877766644
No 63
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.72 E-value=0.003 Score=44.17 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=32.9
Q ss_pred ccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchh
Q 033515 7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT 50 (117)
Q Consensus 7 ~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~ 50 (117)
.++.+++.+.+..+++.++|+|+ ...||.+|+++-+..+.
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalm 44 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALM 44 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHH
Confidence 46788899988888899999999 57899999997665443
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=95.96 E-value=0.00081 Score=51.34 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=56.6
Q ss_pred CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------------ccChh--hhHHH
Q 033515 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------------VRGPT--CAKRL 69 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------------~~g~~--~a~~~ 69 (117)
.+++|++++++.+ +...++|.|...||..+|+++++|+|...-+.....+... +.|.. -+...
T Consensus 620 ~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~l~~~~~~~~~~~v~~~~~~K~~~e~ 696 (725)
T KOG1093|consen 620 HCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRFLPGIVCSEGKKCVVVGKNDKHAAER 696 (725)
T ss_pred cCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhcchHhHHhhCCeEEEeccchHHHHHH
Confidence 6788898888876 5678999999999999999999999998544444433322 33332 12222
Q ss_pred HHHHHHHHHhCCCceEEEccccHHH
Q 033515 70 ANYLDEVKEDTGINSIFVLERGFKG 94 (117)
Q Consensus 70 ~~~l~~~l~~~G~~~v~~l~gG~~~ 94 (117)
...+.. +-+.++-++.+|+.+
T Consensus 697 ~~~~~~----mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 697 LTELYV----MKVPRICILHDGFNN 717 (725)
T ss_pred hhHHHH----hcccHHHHHHHHHhh
Confidence 223333 446677788888773
No 65
>COG2603 Predicted ATPase [General function prediction only]
Probab=95.45 E-value=0.0075 Score=42.70 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=28.6
Q ss_pred HHhhhcCCCeEEEecCCCCcccCCcccccccCCccc
Q 033515 13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDS 48 (117)
Q Consensus 13 ~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~ 48 (117)
...++. .+..+||||.+-||..|+.|+++|+|.-.
T Consensus 8 ~~~~~~-~~~~lid~rap~ef~~g~~~ia~nl~~~n 42 (334)
T COG2603 8 YRALLL-ADTPLIDVRAPIEFENGAMPIAINLPLMN 42 (334)
T ss_pred HHHHHh-cCCceeeccchHHHhcccchhhhcccccc
Confidence 334443 56789999999999999999999999753
No 66
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=89.28 E-value=0.4 Score=34.46 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=29.2
Q ss_pred CcccCHHHHHhhhcCCCeEEEecCCCCcccC---Cccc
Q 033515 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYD---GHIT 39 (117)
Q Consensus 5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~---ghIp 39 (117)
...+...++...+...+..|||+|+..+|.. |||+
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 3456778888888777789999999999988 8988
No 67
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.22 E-value=3.1 Score=30.28 Aligned_cols=37 Identities=14% Similarity=-0.037 Sum_probs=29.2
Q ss_pred CcccCHHHHHhhhc------CCCeEEEecCCCCcccCCcccccc
Q 033515 5 ISYISGSQLLSLKR------RPNIAVIDVRDDERSYDGHITGSL 42 (117)
Q Consensus 5 ~~~is~~e~~~~~~------~~~~~iiDvR~~~e~~~ghIpga~ 42 (117)
...++++++.+.++ ..+..+||||++. |.-.++|+..
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 45789999988773 2467899999998 9888887543
No 68
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=66.03 E-value=9.1 Score=23.88 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=21.4
Q ss_pred cccCHHHHHhhhcCCCeEEEecCCCCcc
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRDDERS 33 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~ 33 (117)
..++++++..+.+.+=-.|||.|+..|-
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~ 40 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREE 40 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence 5678899988766444479999998764
No 69
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=62.53 E-value=6.6 Score=23.98 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.4
Q ss_pred CHHHHHhhhcCCCe-EEEecCCCC
Q 033515 9 SGSQLLSLKRRPNI-AVIDVRDDE 31 (117)
Q Consensus 9 s~~e~~~~~~~~~~-~iiDvR~~~ 31 (117)
+.++|.+++...++ +|||||...
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCC
Confidence 45677777765555 799999754
No 70
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=62.51 E-value=9.7 Score=23.09 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=17.2
Q ss_pred cccCHHHHHhhhcCCCeEEEecCCCCc
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRDDER 32 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~~~e 32 (117)
..++++++..+.+.+=-.||+.|+..|
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E 39 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGE 39 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCC
Confidence 468999999988755457999999865
No 71
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=60.45 E-value=2.3 Score=27.08 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=27.6
Q ss_pred CCCCcccCHHHHHhhhcCCCeEEEecCCCCcccC-Cccccc
Q 033515 2 ARSISYISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGS 41 (117)
Q Consensus 2 ~~~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~-ghIpga 41 (117)
|+.++.++-+|+++.+. .++|+|.++-|.- |.+|=-
T Consensus 7 As~L~vLsL~e~r~aIh----~LLd~Rd~~~WMLFGTLPfy 43 (153)
T PF08756_consen 7 ASNLEVLSLDEMREAIH----RLLDIRDPNVWMLFGTLPFY 43 (153)
T ss_pred hhhCccCCHHHHHHHHH----HHHhccCCCeeEEecccccc
Confidence 55678888899888776 4899999988863 666643
No 72
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=58.96 E-value=15 Score=20.15 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=22.7
Q ss_pred CcccCHHHHHhhhc-CCCeEEEecCCCCc
Q 033515 5 ISYISGSQLLSLKR-RPNIAVIDVRDDER 32 (117)
Q Consensus 5 ~~~is~~e~~~~~~-~~~~~iiDvR~~~e 32 (117)
...|+.+++..++. ..++.|+|..+.++
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 46788999999887 45788999998764
No 73
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=56.71 E-value=6.8 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=18.5
Q ss_pred CCcccCHHHHHhhhcCCCeEEEecCCCCcccC
Q 033515 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYD 35 (117)
Q Consensus 4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ 35 (117)
.+..++.++...+.+-+=-.|||.|++.|...
T Consensus 26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~ 57 (164)
T PF13350_consen 26 NLSNLTEADLERLRELGIRTIIDLRSPTERER 57 (164)
T ss_dssp --TT--HHHHHHHHHTT--EEEE-S-HHHHHH
T ss_pred CcCcCCHHHHHHHHhCCCCEEEECCCcccccc
Confidence 45678899888877544447999999988643
No 74
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=50.42 E-value=63 Score=20.42 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHhCCCceEEEcccc
Q 033515 63 PTCAKRLANYLDEVKEDTGINSIFVLERG 91 (117)
Q Consensus 63 ~~~a~~~~~~l~~~l~~~G~~~v~~l~gG 91 (117)
.++++.+++.+.+..+++|++.|.+.--|
T Consensus 52 pyAAq~aae~~~~~~~~~Gi~~v~v~vkG 80 (132)
T PRK09607 52 PYAAMQAAEKAAEDAKEKGITGVHIKVRA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEEe
Confidence 45566666666666667999988855533
No 75
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=49.22 E-value=31 Score=23.23 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCceEEEccccH
Q 033515 68 RLANYLDEVKEDTGINSIFVLERGF 92 (117)
Q Consensus 68 ~~~~~l~~~l~~~G~~~v~~l~gG~ 92 (117)
..+..|.+.|..+|+ ++++|+|.-
T Consensus 38 TiA~ale~~L~~~G~-~~y~LDGDn 61 (197)
T COG0529 38 TIANALEEKLFAKGY-HVYLLDGDN 61 (197)
T ss_pred HHHHHHHHHHHHcCC-eEEEecChh
Confidence 445666666777998 799999853
No 76
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=20 Score=24.41 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCceEEEcc-ccHHHHHhC
Q 033515 72 YLDEVKEDTGINSIFVLE-RGFKGWEAS 98 (117)
Q Consensus 72 ~l~~~l~~~G~~~v~~l~-gG~~~W~~~ 98 (117)
..++.|+.+||.||.+.. .|..+|...
T Consensus 109 ~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 109 QARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 334457789999887544 667788654
No 77
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=44.72 E-value=91 Score=22.57 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=33.7
Q ss_pred HHHHHhhhcCCCeEEEecCCCCcccCCcc-ccccc-CCccchhHHHHHHhhh-ccChhhhHHHHHHHHHHHHhCCCceEE
Q 033515 10 GSQLLSLKRRPNIAVIDVRDDERSYDGHI-TGSLH-YPSDSFTDKIFDLIQE-VRGPTCAKRLANYLDEVKEDTGINSIF 86 (117)
Q Consensus 10 ~~e~~~~~~~~~~~iiDvR~~~e~~~ghI-pga~~-ip~~~l~~~~~~~~~~-~~g~~~a~~~~~~l~~~l~~~G~~~v~ 86 (117)
-.+|.++.+..++.|+|||.+. ... ++ .|... ++...+ ..+..+ ..|.+ ..+..|.+.|++.|++-.+
T Consensus 76 dpel~~~A~~~g~~i~DvR~p~-~~~-~~~~g~~~~~~~~rv----~~vGTDcavGK~---tTal~L~~~l~~~G~~a~f 146 (301)
T PF07755_consen 76 DPELAAAAKKNGVRIIDVRKPP-KDL-PVASGRIREVKAKRV----LTVGTDCAVGKM---TTALELRRALRERGINAGF 146 (301)
T ss_dssp HHHHHCCHHCCT--EEETTS---SS------SGGGG-SSEEE----EEEESSSSSSHH---HHHHHHHHHHHHTT--EEE
T ss_pred CHHHHHHHHHcCCeEeeccCCC-ccc-ccccCccccCCCCEE----EEEccCccccHH---HHHHHHHHHHHHcCCCceE
Confidence 3567776666789999999983 222 22 12211 111110 011111 23433 2334444556669996444
Q ss_pred EccccHHHHHhC
Q 033515 87 VLERGFKGWEAS 98 (117)
Q Consensus 87 ~l~gG~~~W~~~ 98 (117)
+ -=|-.+|...
T Consensus 147 v-aTGQTGimia 157 (301)
T PF07755_consen 147 V-ATGQTGIMIA 157 (301)
T ss_dssp E-E-SHHHHHCH
T ss_pred E-ecCCceEEEe
Confidence 4 4456777554
No 78
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=42.02 E-value=36 Score=20.66 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCcccCHHHHHhhhc-CCCeEEEecCCCCc
Q 033515 4 SISYISGSQLLSLKR-RPNIAVIDVRDDER 32 (117)
Q Consensus 4 ~~~~is~~e~~~~~~-~~~~~iiDvR~~~e 32 (117)
....|+.+++..++. ..++.|+|+.+.++
T Consensus 16 tS~YITLedi~~lV~~g~~f~V~DakTgeD 45 (107)
T TIGR01848 16 TSSYVTLEDIRDLVREGREFQVVDSKSGDD 45 (107)
T ss_pred ccceeeHHHHHHHHHCCCeEEEEECCCCch
Confidence 346789999999887 45789999998775
No 79
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=40.70 E-value=36 Score=24.96 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=23.5
Q ss_pred CHHHHHhhhcCCCeEEEecCCCCcccCCcccccccC
Q 033515 9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHY 44 (117)
Q Consensus 9 s~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~i 44 (117)
...++...+.+.+..+||+|...+|. |+.-|.+..
T Consensus 153 GKT~iL~~L~~~~~~vlDlE~~aehr-GS~fG~~~~ 187 (345)
T PRK11784 153 GKTELLQALANAGAQVLDLEGLANHR-GSSFGRLGG 187 (345)
T ss_pred cHHHHHHHHHhcCCeEEECCchhhhc-cccccCCCC
Confidence 34566666665678899999999985 334444444
No 80
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=38.29 E-value=1.2e+02 Score=20.16 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHhCCCceEEEccc
Q 033515 76 VKEDTGINSIFVLER 90 (117)
Q Consensus 76 ~l~~~G~~~v~~l~g 90 (117)
.|++.|.+|+++++|
T Consensus 130 ~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 130 QLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHTT-TTEEEE-H
T ss_pred HHHHcCCCcEEEeCc
Confidence 355589999999986
No 81
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.24 E-value=1.3e+02 Score=20.38 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=21.8
Q ss_pred CcccCHHHHHhhhcCCCeEEEecCCCCc
Q 033515 5 ISYISGSQLLSLKRRPNIAVIDVRDDER 32 (117)
Q Consensus 5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e 32 (117)
+..|+.+|..+.+. .+.-||||.+|.|
T Consensus 5 vSPin~eEA~eAie-GGAdIiDVKNP~E 31 (235)
T COG1891 5 VSPINREEAIEAIE-GGADIIDVKNPAE 31 (235)
T ss_pred eccCCHHHHHHHhh-CCCceEeccCccc
Confidence 45677888888886 5788999999986
No 82
>PF15052 TMEM169: TMEM169 protein family
Probab=36.43 E-value=9.1 Score=23.93 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=11.6
Q ss_pred eEEEccccHHHHHhCCCC
Q 033515 84 SIFVLERGFKGWEASGKP 101 (117)
Q Consensus 84 ~v~~l~gG~~~W~~~g~~ 101 (117)
.|..++-|+-+|.=..+.
T Consensus 100 ~v~D~EKGF~GWlCs~L~ 117 (133)
T PF15052_consen 100 EVRDFEKGFYGWLCSKLG 117 (133)
T ss_pred HhhHhhcchhhhhcccCC
Confidence 566777778888544443
No 83
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=33.76 E-value=56 Score=20.52 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCCceEE-Ecc
Q 033515 70 ANYLDEVKEDTGINSIF-VLE 89 (117)
Q Consensus 70 ~~~l~~~l~~~G~~~v~-~l~ 89 (117)
...|+..|...||++|. ++.
T Consensus 21 MaeLr~~l~~~Gf~~V~Tyi~ 41 (137)
T PF08002_consen 21 MAELREALEDLGFTNVRTYIQ 41 (137)
T ss_dssp HHHHHHHHHHCT-EEEEEETT
T ss_pred HHHHHHHHHHcCCCCceEEEe
Confidence 44555567779999888 444
No 84
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=29.94 E-value=64 Score=15.89 Aligned_cols=13 Identities=8% Similarity=0.468 Sum_probs=10.5
Q ss_pred CCCeEEEecCCCC
Q 033515 19 RPNIAVIDVRDDE 31 (117)
Q Consensus 19 ~~~~~iiDvR~~~ 31 (117)
..+..|||+.++.
T Consensus 20 ~~Gl~IvDISnPs 32 (42)
T PF08309_consen 20 NNGLVIVDISNPS 32 (42)
T ss_pred CCCEEEEECCCCC
Confidence 3578999999875
No 85
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=29.43 E-value=1.5e+02 Score=18.67 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=31.8
Q ss_pred ChhhhHHHHHHHHHHHHhCCCceEEEcccc--------HHHHHhCCCCcccc--CCCCCchhhhc
Q 033515 62 GPTCAKRLANYLDEVKEDTGINSIFVLERG--------FKGWEASGKPVCRC--TDVPCKEENQQ 116 (117)
Q Consensus 62 g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG--------~~~W~~~g~~~~~~--~~~~~~~~~~~ 116 (117)
-.++++.++..+.+..+++|..+|.+.-.| +.+....|+.+..- ......+.|.|
T Consensus 59 tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~DvTPiphnG~Rp 123 (129)
T COG0100 59 TPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIEDVTPIPHNGCRP 123 (129)
T ss_pred CHHHHHHHHHHHHHHHHHhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEEEcCCCCCCCCCC
Confidence 345566666666666667999988855544 23455667665532 22333344655
No 86
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=28.65 E-value=61 Score=20.70 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=10.9
Q ss_pred HHHhCCCceEEEccccHHHH
Q 033515 76 VKEDTGINSIFVLERGFKGW 95 (117)
Q Consensus 76 ~l~~~G~~~v~~l~gG~~~W 95 (117)
+|+.+|..+...||||-+.-
T Consensus 124 ~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 124 LLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp HHHHHT-SEEEE---GGG--
T ss_pred HHHHcCcCeEEEecCCcceE
Confidence 44449999999999997653
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.51 E-value=1.5e+02 Score=18.48 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=8.2
Q ss_pred hhcCCCeEEEecCC
Q 033515 16 LKRRPNIAVIDVRD 29 (117)
Q Consensus 16 ~~~~~~~~iiDvR~ 29 (117)
+++..++.+||...
T Consensus 26 ~lr~~G~eVi~LG~ 39 (137)
T PRK02261 26 ALTEAGFEVINLGV 39 (137)
T ss_pred HHHHCCCEEEECCC
Confidence 34455666777654
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.25 E-value=1.2e+02 Score=18.38 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=12.1
Q ss_pred HHHHhCCCceEEEcccc
Q 033515 75 EVKEDTGINSIFVLERG 91 (117)
Q Consensus 75 ~~l~~~G~~~v~~l~gG 91 (117)
..|++.|++++.++-||
T Consensus 72 ~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 72 ELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHhcCCCCCEEEEEC
Confidence 34566888778877776
No 89
>PRK03094 hypothetical protein; Provisional
Probab=28.25 E-value=64 Score=18.54 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=18.2
Q ss_pred CHHHHHhhhcCCCeEEEecCCCC
Q 033515 9 SGSQLLSLKRRPNIAVIDVRDDE 31 (117)
Q Consensus 9 s~~e~~~~~~~~~~~iiDvR~~~ 31 (117)
+-.++++.|+.+++.++|.++..
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~~ 31 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSEQ 31 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCccc
Confidence 34568888888899999999854
No 90
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=26.59 E-value=86 Score=19.39 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=20.2
Q ss_pred cccCHHHHHhhhcCCCeEEEecCCCCcc
Q 033515 6 SYISGSQLLSLKRRPNIAVIDVRDDERS 33 (117)
Q Consensus 6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~ 33 (117)
..|+|.++..++ +.+.|||+..+..|
T Consensus 26 ~didP~~i~~~L--p~i~ile~~~~~~~ 51 (137)
T PF07310_consen 26 SDIDPADIPRLL--PHIFILEVDDPGDF 51 (137)
T ss_pred hcCCHHHHHHHh--CCeEEEEEeCCCce
Confidence 468899999887 47999998765554
No 91
>CHL00041 rps11 ribosomal protein S11
Probab=26.54 E-value=1.3e+02 Score=18.36 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHHHHhCCCceEEEccccH
Q 033515 63 PTCAKRLANYLDEVKEDTGINSIFVLERGF 92 (117)
Q Consensus 63 ~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~ 92 (117)
..+++.++..+.+.+.+.|++.|.++--|+
T Consensus 55 ~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~ 84 (116)
T CHL00041 55 PFAAQTAAENAIRTVIDQGMKRAEVMIKGP 84 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEECC
Confidence 445555565555556668999888666554
No 92
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=25.75 E-value=1e+02 Score=19.96 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCCceEEEcccc
Q 033515 68 RLANYLDEVKEDTGINSIFVLERG 91 (117)
Q Consensus 68 ~~~~~l~~~l~~~G~~~v~~l~gG 91 (117)
.++..|.+.|...|+ ++++|+|.
T Consensus 17 TlA~~L~~~L~~~g~-~~~~LDgD 39 (156)
T PF01583_consen 17 TLARALERRLFARGI-KVYLLDGD 39 (156)
T ss_dssp HHHHHHHHHHHHTTS--EEEEEHH
T ss_pred HHHHHHHHHHHHcCC-cEEEecCc
Confidence 456666667777997 69999975
No 93
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=24.92 E-value=1.8e+02 Score=20.41 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCCCchhhhcC
Q 033515 66 AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEENQQY 117 (117)
Q Consensus 66 a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~~~~~~~~ 117 (117)
+...+..+++.|...| .|.-++ .-|..-.+.+.....+|.++...+|
T Consensus 179 SeAlaEHIkRRLlysg--TVtrid---~pwGmPfYaLtr~sYsP~~~~erty 225 (299)
T PRK13245 179 SEALAEHIKRRLLYSG--TVTRID---SPWGMPFYALTRPFYAPADDQERTY 225 (299)
T ss_pred HHHHHHHHHHHHhhcc--ceeecc---CCCCCchhheeccccCCCCcccccc
Confidence 5677888887777777 355555 2354455556666566666554443
No 94
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=24.71 E-value=1.6e+02 Score=18.12 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=19.7
Q ss_pred ChhhhHHHHHHHHHHHHhCCCceEEEcccc
Q 033515 62 GPTCAKRLANYLDEVKEDTGINSIFVLERG 91 (117)
Q Consensus 62 g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG 91 (117)
-.++++.+++.+.+..+++|++.|.+.--|
T Consensus 44 TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG 73 (114)
T TIGR03628 44 SPYAAMQAAGRAAEKAKERGITGLHIKVRA 73 (114)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEEe
Confidence 345566666666666667999988855533
No 95
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=24.33 E-value=1.3e+02 Score=19.26 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=12.1
Q ss_pred HHHHhCCCceEEEccccHHHH
Q 033515 75 EVKEDTGINSIFVLERGFKGW 95 (117)
Q Consensus 75 ~~l~~~G~~~v~~l~gG~~~W 95 (117)
+.|+..|.+.|+.+.|+...+
T Consensus 9 ~~L~~~Gv~~vfgvpG~~~~~ 29 (172)
T PF02776_consen 9 EALKANGVTHVFGVPGSGNLP 29 (172)
T ss_dssp HHHHHTT-SEEEEE--GGGHH
T ss_pred HHHHHCCCeEEEEEeChhHhH
Confidence 344449999999888775433
No 96
>PRK10113 cell division modulator; Provisional
Probab=24.29 E-value=15 Score=20.35 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=18.9
Q ss_pred HhCCCceEEEccccHHHHHhCCCCccc
Q 033515 78 EDTGINSIFVLERGFKGWEASGKPVCR 104 (117)
Q Consensus 78 ~~~G~~~v~~l~gG~~~W~~~g~~~~~ 104 (117)
+.-||++|.+|.|-+.++..-|.....
T Consensus 29 kmd~frDVW~LrGKYVAFvl~ge~FrR 55 (80)
T PRK10113 29 KMDSFRDVWMLRGKYVAFVLMGESFLR 55 (80)
T ss_pred hhcchhhhheeccceEEEEEechhhcc
Confidence 347888899998887777655544443
No 97
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=24.19 E-value=1.3e+02 Score=16.32 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=25.4
Q ss_pred ccccccCCccchhHHHHHHhhhccChhhhHHHHHHHHHHHHhCCCce
Q 033515 38 ITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINS 84 (117)
Q Consensus 38 Ipga~~ip~~~l~~~~~~~~~~~~g~~~a~~~~~~l~~~l~~~G~~~ 84 (117)
+.|.-.++...+......+...+.+...-..++..+...++..||-.
T Consensus 8 ~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~ 54 (76)
T PF08479_consen 8 FEGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYIT 54 (76)
T ss_dssp EES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT
T ss_pred EECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceE
Confidence 45555566666665555444434444334556666666677799963
No 98
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=22.00 E-value=1.8e+02 Score=17.46 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHhCCCceEEEccccH
Q 033515 63 PTCAKRLANYLDEVKEDTGINSIFVLERGF 92 (117)
Q Consensus 63 ~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~ 92 (117)
..+++.++..+.+.++++|+..|.+.--|+
T Consensus 42 ~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~ 71 (108)
T TIGR03632 42 PYAAQLAAEDAAKKAKEFGMKTVDVYVKGP 71 (108)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEECC
Confidence 344555555555556669999888665444
No 99
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=21.74 E-value=1.2e+02 Score=20.71 Aligned_cols=17 Identities=6% Similarity=0.339 Sum_probs=8.4
Q ss_pred cccccccCCccchhHHH
Q 033515 37 HITGSLHYPSDSFTDKI 53 (117)
Q Consensus 37 hIpga~~ip~~~l~~~~ 53 (117)
+.||+++++.+.+...+
T Consensus 72 ~fpGTisl~~~t~~~~l 88 (237)
T PF02633_consen 72 GFPGTISLSPETLIALL 88 (237)
T ss_dssp TSTT-BBB-HHHHHHHH
T ss_pred CCCCeEEeCHHHHHHHH
Confidence 35666666666555433
No 100
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=21.20 E-value=1.5e+02 Score=19.06 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=15.3
Q ss_pred HHHHHHhCCCceEEEccccHH
Q 033515 73 LDEVKEDTGINSIFVLERGFK 93 (117)
Q Consensus 73 l~~~l~~~G~~~v~~l~gG~~ 93 (117)
+.+.|++.|.+.|+-+.|+..
T Consensus 6 l~~~L~~~Gv~~vFgipG~~~ 26 (164)
T cd07039 6 IVETLENWGVKRVYGIPGDSI 26 (164)
T ss_pred HHHHHHHCCCCEEEEcCCCch
Confidence 333455599999999998844
No 101
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=20.95 E-value=41 Score=21.32 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=7.9
Q ss_pred cCCcccccccC
Q 033515 34 YDGHITGSLHY 44 (117)
Q Consensus 34 ~~ghIpga~~i 44 (117)
..-||||++|+
T Consensus 123 ~~~H~~~~~~~ 133 (135)
T TIGR03096 123 KNIHLPGSLNV 133 (135)
T ss_pred hhhcCCCcccc
Confidence 34788888875
No 102
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=20.92 E-value=1.2e+02 Score=23.28 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=16.9
Q ss_pred HHhCCCceEEEccccHHHHHhC
Q 033515 77 KEDTGINSIFVLERGFKGWEAS 98 (117)
Q Consensus 77 l~~~G~~~v~~l~gG~~~W~~~ 98 (117)
++.+|| ||..+....+.|.++
T Consensus 339 fRDmG~-nVsMmADStSRWAEA 359 (618)
T KOG1352|consen 339 FRDMGY-NVSMMADSTSRWAEA 359 (618)
T ss_pred HHhcCc-ceeeeecchhHHHHH
Confidence 455999 899999999999654
No 103
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=20.88 E-value=1.3e+02 Score=20.45 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=18.1
Q ss_pred ccCHHHHHhhh--cCCCeEEEecCCCCc
Q 033515 7 YISGSQLLSLK--RRPNIAVIDVRDDER 32 (117)
Q Consensus 7 ~is~~e~~~~~--~~~~~~iiDvR~~~e 32 (117)
.-|.++|.... ..++..|+|+|.|..
T Consensus 34 ~~s~~~fL~~~~~~~pGclllDvrMPg~ 61 (202)
T COG4566 34 FASAEEFLAAAPLDRPGCLLLDVRMPGM 61 (202)
T ss_pred ecCHHHHHhhccCCCCCeEEEecCCCCC
Confidence 45667766643 246889999998854
No 104
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=20.75 E-value=55 Score=22.07 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=15.5
Q ss_pred eEEEecCCC--CcccCCccccc
Q 033515 22 IAVIDVRDD--ERSYDGHITGS 41 (117)
Q Consensus 22 ~~iiDvR~~--~e~~~ghIpga 41 (117)
+.|++||+. +|.+.||+.|.
T Consensus 134 veV~~vr~at~eEi~~gh~hg~ 155 (196)
T PRK10737 134 VEVVAIREATEEELAHGHVHGA 155 (196)
T ss_pred EEEEEeccCCHHHHhcCCccCC
Confidence 568999986 66778888765
No 105
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=20.54 E-value=1.5e+02 Score=16.84 Aligned_cols=24 Identities=8% Similarity=0.064 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEEccc
Q 033515 66 AKRLANYLDEVKEDTGINSIFVLER 90 (117)
Q Consensus 66 a~~~~~~l~~~l~~~G~~~v~~l~g 90 (117)
++.+.+..-+.|++.|++ |....+
T Consensus 32 SRtaVwK~Iq~Lr~~G~~-I~s~~~ 55 (79)
T COG1654 32 SRTAVWKHIQQLREEGVD-IESVRG 55 (79)
T ss_pred cHHHHHHHHHHHHHhCCc-eEecCC
Confidence 344444444458889995 665444
No 106
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=20.08 E-value=2.3e+02 Score=19.67 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=26.5
Q ss_pred ChhhhHHHHHHHHHHHHhCCCceEEEccccHH-------HHHhCCCCccc
Q 033515 62 GPTCAKRLANYLDEVKEDTGINSIFVLERGFK-------GWEASGKPVCR 104 (117)
Q Consensus 62 g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~-------~W~~~g~~~~~ 104 (117)
-.+||+.+++.+.+-.+..|+..|.++.-|.. +....|..+..
T Consensus 161 TpfAAQ~aae~aakka~~~GIk~V~V~vKGpGgREtALRaL~~~GLkIt~ 210 (233)
T PTZ00090 161 SERCAYRIGENIAKKCRRLGIFAVDIKFRRIMRVETVLQAFYANGLQVTQ 210 (233)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEEeCCChHHHHHHHHHHCCCEEEE
Confidence 34566666666655566699998886664442 34455665543
Done!