BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033517
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q65WT0|BD31B_ORYSJ Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica
GN=Os05g0446300 PE=2 SV=1
Length = 145
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/117 (91%), Positives = 113/117 (96%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAENDPHDGKRKCE LWPIF+I+HQKSRYI+DLYYRRKEISKELYEFCLDQG+AD NL
Sbjct: 29 MREAENDPHDGKRKCEALWPIFRISHQKSRYIYDLYYRRKEISKELYEFCLDQGHADKNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKNLREEKVIECVHCGCRGCASGD 117
IAKWKKPGYERLCCLRC+Q RDHNF TTCVCRVPK+LREEKVIECVHCGCRGCASGD
Sbjct: 89 IAKWKKPGYERLCCLRCIQTRDHNFATTCVCRVPKHLREEKVIECVHCGCRGCASGD 145
>sp|Q94DE2|BD31A_ORYSJ Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica
GN=Os01g0857700 PE=2 SV=1
Length = 145
Score = 224 bits (572), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 112/117 (95%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAEND HDGKRKCE LWPIF+I+HQ+SRYI+DLYYRRKEISKELYEFCLDQGYAD NL
Sbjct: 29 MREAENDTHDGKRKCEALWPIFRISHQRSRYIYDLYYRRKEISKELYEFCLDQGYADRNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKNLREEKVIECVHCGCRGCASGD 117
IAKWKKPGYERLCCLRC+Q RDHNF TTCVCRVPK+LREEKVIECVHCGCRGCASGD
Sbjct: 89 IAKWKKPGYERLCCLRCIQTRDHNFATTCVCRVPKHLREEKVIECVHCGCRGCASGD 145
>sp|P35682|BD31C_ORYSJ Protein BUD31 homolog 3 OS=Oryza sativa subsp. japonica
GN=Os12g0149800 PE=2 SV=2
Length = 145
Score = 216 bits (549), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 100/117 (85%), Positives = 110/117 (94%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAENDPHDG+RKCE LWPIFKI HQ+SRY++DLYY RKEIS+ELYEFCLDQG+AD NL
Sbjct: 29 MREAENDPHDGRRKCEALWPIFKINHQRSRYLYDLYYNRKEISQELYEFCLDQGHADRNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKNLREEKVIECVHCGCRGCASGD 117
IAKWKK GYERLCCLRC+Q RDHNF TTCVCRVPK+LREE+VIECVHCGC+GCASGD
Sbjct: 89 IAKWKKQGYERLCCLRCIQTRDHNFATTCVCRVPKHLREEQVIECVHCGCKGCASGD 145
>sp|Q962X9|BUD31_BRABE Protein BUD31 homolog OS=Branchiostoma belcheri PE=2 SV=1
Length = 144
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/116 (73%), Positives = 98/116 (84%), Gaps = 1/116 (0%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAE +PH+GKRK E LWPIFKI HQKSRYIFDL+YRRK IS+ELYE+CL +G AD NL
Sbjct: 29 MREAETEPHEGKRKVEALWPIFKIHHQKSRYIFDLFYRRKAISRELYEYCLKEGIADKNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LREEKVIECVHCGCRGCAS 115
IAKWKK GYE LCCLRC+Q RD NF T C+CRVPK+ L E +++ECVHCGCRGC+
Sbjct: 89 IAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEEGRIVECVHCGCRGCSG 144
>sp|O70454|BUD31_RAT Protein BUD31 homolog OS=Rattus norvegicus GN=Bud31 PE=2 SV=2
Length = 144
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 98/116 (84%), Gaps = 1/116 (0%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAE +PH+GKRK E+LWPIF+I HQK+RYIFDL+Y+RK IS+ELYE+C+ +GYAD NL
Sbjct: 29 MREAETEPHEGKRKVESLWPIFRIHHQKTRYIFDLFYKRKAISRELYEYCIKEGYADKNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LREEKVIECVHCGCRGCAS 115
IAKWKK GYE LCCLRC+Q RD NF T C+CRVPK+ L ++IEC HCGCRGC+
Sbjct: 89 IAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEVGRIIECTHCGCRGCSG 144
>sp|P41223|BUD31_HUMAN Protein BUD31 homolog OS=Homo sapiens GN=BUD31 PE=1 SV=2
Length = 144
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 98/116 (84%), Gaps = 1/116 (0%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAE +PH+GKRK E+LWPIF+I HQK+RYIFDL+Y+RK IS+ELYE+C+ +GYAD NL
Sbjct: 29 MREAETEPHEGKRKVESLWPIFRIHHQKTRYIFDLFYKRKAISRELYEYCIKEGYADKNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LREEKVIECVHCGCRGCAS 115
IAKWKK GYE LCCLRC+Q RD NF T C+CRVPK+ L ++IEC HCGCRGC+
Sbjct: 89 IAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEVGRIIECTHCGCRGCSG 144
>sp|Q2NKU3|BUD31_BOVIN Protein BUD31 homolog OS=Bos taurus GN=BUD31 PE=2 SV=1
Length = 144
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 98/116 (84%), Gaps = 1/116 (0%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAE +PH+GKRK E+LWPIF+I HQK+RYIFDL+Y+RK IS+ELYE+C+ +GYAD NL
Sbjct: 29 MREAETEPHEGKRKVESLWPIFRIHHQKTRYIFDLFYKRKAISRELYEYCIKEGYADKNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LREEKVIECVHCGCRGCAS 115
IAKWKK GYE LCCLRC+Q RD NF T C+CRVPK+ L ++IEC HCGCRGC+
Sbjct: 89 IAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEVGRIIECTHCGCRGCSG 144
>sp|P12805|BUD31_XENLA Protein BUD31 homolog OS=Xenopus laevis GN=bud31 PE=2 SV=1
Length = 144
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 97/116 (83%), Gaps = 1/116 (0%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAE DPH+GKRK E+LWPIF+I HQK+RYIFDL+Y+RK IS+ELY++C+ +GYAD NL
Sbjct: 29 MREAETDPHEGKRKVESLWPIFRIHHQKTRYIFDLFYKRKAISRELYDYCIREGYADKNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LREEKVIECVHCGCRGCAS 115
IAKWKK GYE LCCLRC+Q RD NF T C+CRVPK L ++IEC HCGCRGC+
Sbjct: 89 IAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKTKLEVGRIIECTHCGCRGCSG 144
>sp|Q567Z7|BUD31_DANRE Protein BUD31 homolog OS=Danio rerio GN=bud31 PE=2 SV=1
Length = 144
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAE +PH+GKRK E+LWPIF++ HQ+SRYIFDL+Y+RK IS+ELY++C+ GYAD NL
Sbjct: 29 MREAETEPHEGKRKVESLWPIFRLHHQRSRYIFDLFYKRKAISRELYKYCIRGGYADKNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LREEKVIECVHCGCRGCAS 115
IAKWKK GYE LCCLRC+Q RD NF T C+CRVPK L ++IEC HCGCRGC+
Sbjct: 89 IAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKGKLEVGRIIECTHCGCRGCSG 144
>sp|P34313|BUD31_CAEEL Protein BUD31 homolog OS=Caenorhabditis elegans GN=C07A9.2 PE=2
SV=1
Length = 147
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 93/116 (80%), Gaps = 1/116 (0%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MREAE +PH+GKRK E WPIF+I HQ+SRY++D+YY++ EIS+ELYEFCL +AD L
Sbjct: 32 MREAETEPHEGKRKTEINWPIFRIHHQRSRYVYDMYYKKAEISRELYEFCLTAKFADAAL 91
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LREEKVIECVHCGCRGCAS 115
IAKWKK GYE LCC++C+ RD NF T C+CRVPK+ L E+VIECVHCGC GC+
Sbjct: 92 IAKWKKQGYENLCCVKCVNTRDSNFGTACICRVPKSKLDAERVIECVHCGCHGCSG 147
>sp|O74772|CWF14_SCHPO Pre-mRNA-splicing factor cwf14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf14 PE=1 SV=1
Length = 146
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
Query: 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNL 60
MR+ EN G K E L PIF++ HQ+SRYI+DLYY+R+ IS ELY + L Q YAD NL
Sbjct: 30 MRQIENTMGKGT-KTEMLAPIFQLHHQRSRYIYDLYYKREAISTELYNWLLKQNYADGNL 88
Query: 61 IAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LREEKVIECVHCGCRGCASGD 117
IAKWKKPGYE+LCCLRC+Q + F +TC+CRVPK+ L +++ + C HCGC GCAS D
Sbjct: 89 IAKWKKPGYEKLCCLRCIQTAESKFGSTCICRVPKSKLDKDQRVRCTHCGCNGCASCD 146
>sp|P25337|BUD31_YEAST Pre-mRNA-splicing factor BUD31 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUD31 PE=1 SV=1
Length = 157
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 86/128 (67%), Gaps = 11/128 (8%)
Query: 1 MREAENDPHD--GKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADC 58
+R+A+ D + E LW I ++ HQ+SRYI+ LYY+RK ISK+LY++ + + YAD
Sbjct: 30 LRDAQKDKSSKLAAKSNEQLWEIMQLHHQRSRYIYTLYYKRKAISKDLYDWLIKEKYADK 89
Query: 59 NLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKNLREEKVI---------ECVHCG 109
LIAKW+K GYE+LCCLRC+Q + N +TC+CRVP+ EE+ +CVHCG
Sbjct: 90 LLIAKWRKTGYEKLCCLRCIQKNETNNGSTCICRVPRAQLEEEARKKGTQVSFHQCVHCG 149
Query: 110 CRGCASGD 117
CRGCAS D
Sbjct: 150 CRGCASTD 157
>sp|Q6PGH1|BUD31_MOUSE Protein BUD31 homolog OS=Mus musculus GN=Bud31 PE=2 SV=1
Length = 103
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 40 KEISKELYEFCLDQGYADCNLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKN-LR 98
+++ +ELYE+C+ +GYAD NLIAKWKK GYE LCCLRC+Q RD NF T C+CRVPK+ L
Sbjct: 27 QKMREELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLE 86
Query: 99 EEKVIECVHCGCRGCAS 115
++IEC HCGCRGC+
Sbjct: 87 VGRIIECTHCGCRGCSG 103
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum
lycopersicum GN=CAB6A PE=2 SV=1
Length = 246
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 59 NLIAKWKKPGYERLCCLRCMQPRDHNFQTTCVCRVPKNLREEKVIECVHC 108
++ A W PG R L P D F + + VP NL K E +HC
Sbjct: 44 SMSADWM-PGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHC 92
>sp|Q9Z6W4|PRIM_CHLPN DNA primase OS=Chlamydia pneumoniae GN=dnaG PE=3 SV=1
Length = 590
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 20 PIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADC 58
PIFK KSR +F L + R+ I+KE + L +G ADC
Sbjct: 231 PIFK----KSRILFGLNFSRRRIAKE-KKVILVEGQADC 264
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.494
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,311,159
Number of Sequences: 539616
Number of extensions: 1815542
Number of successful extensions: 4442
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4418
Number of HSP's gapped (non-prelim): 18
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)