Query 033517
Match_columns 117
No_of_seqs 102 out of 149
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3404 G10 protein/predicted 100.0 1.8E-77 3.9E-82 448.5 5.3 116 1-116 29-145 (145)
2 PF01125 G10: G10 protein; In 100.0 4E-76 8.8E-81 444.4 4.9 115 1-115 30-145 (145)
3 COG5132 BUD31 Cell cycle contr 100.0 5.5E-66 1.2E-70 385.8 2.5 116 1-117 30-146 (146)
4 PF04376 ATE_N: Arginine-tRNA- 71.2 3.3 7.1E-05 28.1 1.9 30 39-78 28-60 (80)
5 PF14553 YqbF: YqbF, hypotheti 69.2 2.5 5.4E-05 26.6 0.9 18 39-56 18-35 (43)
6 PF08513 LisH: LisH; InterPro 56.4 8.6 0.00019 21.2 1.5 19 41-59 2-20 (27)
7 smart00667 LisH Lissencephaly 51.8 11 0.00025 19.8 1.5 21 39-59 3-23 (34)
8 PF06677 Auto_anti-p27: Sjogre 48.7 7.3 0.00016 23.9 0.4 23 86-109 17-41 (41)
9 PF14077 WD40_alt: Alternative 47.3 11 0.00024 24.3 1.1 12 40-51 31-42 (48)
10 PRK01305 arginyl-tRNA-protein 47.2 14 0.00031 30.0 2.0 39 27-77 25-66 (240)
11 PF12368 DUF3650: Protein of u 45.6 9.7 0.00021 22.1 0.6 16 25-45 4-19 (28)
12 KOG2752 Uncharacterized conser 41.8 15 0.00033 31.9 1.5 58 57-114 81-164 (345)
13 PRK00420 hypothetical protein; 40.7 13 0.00027 27.4 0.7 22 87-109 24-47 (112)
14 PTZ00087 thrombosponding-relat 39.8 15 0.00033 31.6 1.2 19 31-49 314-332 (340)
15 PRK11798 ClpXP protease specif 37.1 22 0.00047 27.2 1.5 16 42-57 11-26 (138)
16 PRK12726 flagellar biosynthesi 36.5 19 0.00041 31.8 1.3 40 20-64 125-164 (407)
17 PF03604 DNA_RNApol_7kD: DNA d 35.1 14 0.0003 21.6 0.1 16 96-111 11-26 (32)
18 COG0694 Thioredoxin-like prote 34.8 15 0.00032 26.2 0.3 10 108-117 51-60 (93)
19 PF14445 Prok-RING_2: Prokaryo 33.1 9.9 0.00021 25.2 -0.8 13 103-115 23-35 (57)
20 KOG4587 Predicted membrane pro 31.8 24 0.00053 32.6 1.2 49 26-76 512-580 (605)
21 COG2969 SspB Stringent starvat 31.7 29 0.00063 27.2 1.5 14 42-55 12-25 (155)
22 PF08343 RNR_N: Ribonucleotide 30.5 51 0.0011 22.8 2.4 21 45-65 46-66 (82)
23 PF13824 zf-Mss51: Zinc-finger 29.2 23 0.00051 23.2 0.5 21 91-111 2-23 (55)
24 PF13719 zinc_ribbon_5: zinc-r 27.9 31 0.00068 20.1 0.9 19 92-110 13-33 (37)
25 COG3433 Aryl carrier domain [S 27.5 23 0.00049 24.7 0.2 12 59-70 36-47 (74)
26 TIGR02098 MJ0042_CXXC MJ0042 f 24.6 38 0.00083 19.2 0.8 18 92-109 13-32 (38)
27 PF10668 Phage_terminase: Phag 23.0 67 0.0015 21.2 1.8 30 31-68 11-46 (60)
28 PF13717 zinc_ribbon_4: zinc-r 22.6 44 0.00096 19.5 0.8 19 92-110 13-33 (36)
29 smart00659 RPOLCX RNA polymera 22.3 44 0.00096 20.5 0.8 13 99-111 16-28 (44)
30 PF13606 Ank_3: Ankyrin repeat 22.2 66 0.0014 17.6 1.4 16 43-59 14-29 (30)
31 PF07754 DUF1610: Domain of un 20.6 57 0.0012 18.1 0.9 13 97-109 11-23 (24)
No 1
>KOG3404 consensus G10 protein/predicted nuclear transcription regulator [Transcription]
Probab=100.00 E-value=1.8e-77 Score=448.49 Aligned_cols=116 Identities=70% Similarity=1.431 Sum_probs=114.9
Q ss_pred CccccCCCCCCCCCCccccceeeecccchhhhhhhhhhhhhhhHHHHHHHHhcCccChHHHhhccccceeeeceecceec
Q 033517 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNLIAKWKKPGYERLCCLRCMQP 80 (117)
Q Consensus 1 mr~ae~~~~~~krk~e~lWpI~rI~hqrSRYIydlyYk~k~ISkeLy~~~lk~~yaD~~LIaKWkK~GYE~LCCl~CIq~ 80 (117)
|||||++||+|+|++|+||||||||||||||||||||||++||+|||+||++++|||++|||||||+|||+||||+||||
T Consensus 29 mReae~~~~~~~~~~E~lwpIfqlhHQrsRYiYdlyykR~~IS~eLY~~~l~~~yaD~~LiakWkk~GYE~LCClRCIq~ 108 (145)
T KOG3404|consen 29 MREAETEPHEGKRKTESLWPIFQLHHQRSRYIYDLYYKRKAISRELYDYCLKEKYADKNLIAKWKKQGYENLCCLRCIQT 108 (145)
T ss_pred HHHhhcCcccCCCcchhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHhhcCccceeeeeeccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEeeccc-cccccceeeccccccccccCC
Q 033517 81 RDHNFQTTCVCRVPK-NLREEKVIECVHCGCRGCASG 116 (117)
Q Consensus 81 ~~~n~gttCICRVPk-~l~~~~~~~Cv~CGC~GCaS~ 116 (117)
.|+|||||||||||+ +|+++.+++||||||+||||+
T Consensus 109 ~dsn~Gt~CICRVPk~~ld~~~~~~C~hCGCrGCs~~ 145 (145)
T KOG3404|consen 109 RDSNFGTTCICRVPKSKLDVERIVECVHCGCRGCSGY 145 (145)
T ss_pred cccCCCceEEEeCChhhcChhheeeeeccCcCCCCCC
Confidence 999999999999999 999999999999999999985
No 2
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=100.00 E-value=4e-76 Score=444.38 Aligned_cols=115 Identities=75% Similarity=1.473 Sum_probs=114.2
Q ss_pred CccccCCCCCCCCCCccccceeeecccchhhhhhhhhhhhhhhHHHHHHHHhcCccChHHHhhccccceeeeceecceec
Q 033517 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNLIAKWKKPGYERLCCLRCMQP 80 (117)
Q Consensus 1 mr~ae~~~~~~krk~e~lWpI~rI~hqrSRYIydlyYk~k~ISkeLy~~~lk~~yaD~~LIaKWkK~GYE~LCCl~CIq~ 80 (117)
||||||++|+|||++|+||||||||||||||||||||++|+||||||||||+++|||++|||||||+|||+||||+|||+
T Consensus 30 mr~ae~~~~~~k~k~e~lWpI~rI~hqrSRYIydlyYk~k~ISkeLY~~ll~~~yaD~~LIaKWKk~GYE~LCCl~Ciq~ 109 (145)
T PF01125_consen 30 MREAENEPHEGKRKNESLWPIFRIHHQRSRYIYDLYYKRKAISKELYDWLLKEKYADANLIAKWKKPGYEKLCCLRCIQT 109 (145)
T ss_pred HHHHhhCCCcCCCCCccccceeeecchhhhHHHHHHHHhhhccHHHHHHHHHcCCcCHHHHHHhccccHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEeeccc-cccccceeeccccccccccC
Q 033517 81 RDHNFQTTCVCRVPK-NLREEKVIECVHCGCRGCAS 115 (117)
Q Consensus 81 ~~~n~gttCICRVPk-~l~~~~~~~Cv~CGC~GCaS 115 (117)
+|+|||+|||||||+ +|+++.+++||+|||+||||
T Consensus 110 ~~~n~g~tCICRVP~~~l~~~~~~~c~~CGC~GCaS 145 (145)
T PF01125_consen 110 RDTNFGTTCICRVPKAKLEEKQFVECVHCGCRGCAS 145 (145)
T ss_pred ccccCCCceEEeCcHHHhccCcccccCCCCCCCCCC
Confidence 999999999999999 99999999999999999998
No 3
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=100.00 E-value=5.5e-66 Score=385.80 Aligned_cols=116 Identities=57% Similarity=1.160 Sum_probs=112.1
Q ss_pred CccccCCCCCCCCCCccccceeeecccchhhhhhhhhhhhhhhHHHHHHHHhcCccChHHHhhccccceeeeceecceec
Q 033517 1 MREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNLIAKWKKPGYERLCCLRCMQP 80 (117)
Q Consensus 1 mr~ae~~~~~~krk~e~lWpI~rI~hqrSRYIydlyYk~k~ISkeLy~~~lk~~yaD~~LIaKWkK~GYE~LCCl~CIq~ 80 (117)
||+|||++..+. +.|.||||||+|||||||||+|||||++||++||+||++++|||.+|||||+|+|||+||||+|||+
T Consensus 30 mRqaen~~~~~s-k~E~lwpIfQLHHQRSRYIY~LyyKR~aISt~LY~wL~k~~yaD~~LiakW~k~GYEkLCCLRCIQ~ 108 (146)
T COG5132 30 MRQAENAPLAPS-KPENLWPIFQLHHQRSRYIYNLYYKRGAISTKLYGWLSKNRYADHELIAKWDKVGYEKLCCLRCIQP 108 (146)
T ss_pred HHHHhcCCCCCC-ChHHhhHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHhcccchhHhhhhcccchhhhhhHhhcCc
Confidence 899999998654 4499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEeeccc-cccccceeeccccccccccCCC
Q 033517 81 RDHNFQTTCVCRVPK-NLREEKVIECVHCGCRGCASGD 117 (117)
Q Consensus 81 ~~~n~gttCICRVPk-~l~~~~~~~Cv~CGC~GCaS~D 117 (117)
.+++||+|||||||+ +|++.+.+.|+||||+||||.|
T Consensus 109 ~esk~GstCICRVP~~~ld~~qr~kC~hCGCrGCas~d 146 (146)
T COG5132 109 IESKHGSTCICRVPQRNLDVSQRLKCDHCGCRGCASYD 146 (146)
T ss_pred ccccCCCEEEEeCchhhcCHHHhccccccCCCcccCCC
Confidence 999999999999999 9999999999999999999987
No 4
>PF04376 ATE_N: Arginine-tRNA-protein transferase, N terminus; InterPro: IPR007471 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the N-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=71.21 E-value=3.3 Score=28.09 Aligned_cols=30 Identities=33% Similarity=0.755 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHhcCccChHHHhhccccc---eeeeceecce
Q 033517 39 RKEISKELYEFCLDQGYADCNLIAKWKKPG---YERLCCLRCM 78 (117)
Q Consensus 39 ~k~ISkeLy~~~lk~~yaD~~LIaKWkK~G---YE~LCCl~CI 78 (117)
-..++.++|+-|++.| |++.| |..-| ..|-
T Consensus 28 ~~~~~~~~y~~Ll~~G---------~RRsG~~~YrP~c-~~C~ 60 (80)
T PF04376_consen 28 SESLSPEDYQQLLDRG---------FRRSGNYFYRPNC-QSCC 60 (80)
T ss_pred cccCCHHHHHHHHHhC---------CcccCCEEecCCC-CCCc
Confidence 3558999999999999 99999 88877 6664
No 5
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=69.22 E-value=2.5 Score=26.59 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=14.4
Q ss_pred hhhhhHHHHHHHHhcCcc
Q 033517 39 RKEISKELYEFCLDQGYA 56 (117)
Q Consensus 39 ~k~ISkeLy~~~lk~~ya 56 (117)
.+.||+++|+||.++++-
T Consensus 18 ee~V~kk~y~YL~~ne~F 35 (43)
T PF14553_consen 18 EEKVSKKIYNYLNDNEFF 35 (43)
T ss_dssp EEEE-HHHHHHHHHSTTE
T ss_pred eeehhHHHHHHHhcCCcE
Confidence 567999999999998863
No 6
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=56.40 E-value=8.6 Score=21.19 Aligned_cols=19 Identities=21% Similarity=0.772 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHhcCccChH
Q 033517 41 EISKELYEFCLDQGYADCN 59 (117)
Q Consensus 41 ~ISkeLy~~~lk~~yaD~~ 59 (117)
.|..=+|+||+++||.+..
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA 20 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETA 20 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHCCcHHHH
Confidence 3566689999999998764
No 7
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=51.77 E-value=11 Score=19.78 Aligned_cols=21 Identities=29% Similarity=0.678 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHhcCccChH
Q 033517 39 RKEISKELYEFCLDQGYADCN 59 (117)
Q Consensus 39 ~k~ISkeLy~~~lk~~yaD~~ 59 (117)
+..+.+=+++||+++||.+..
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta 23 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETA 23 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHH
Confidence 456778899999999997765
No 8
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=48.65 E-value=7.3 Score=23.91 Aligned_cols=23 Identities=35% Similarity=0.846 Sum_probs=15.9
Q ss_pred Ccce-Eeeccc-cccccceeeccccc
Q 033517 86 QTTC-VCRVPK-NLREEKVIECVHCG 109 (117)
Q Consensus 86 gttC-ICRVPk-~l~~~~~~~Cv~CG 109 (117)
+.+| .|-+|. +...+ .+-||.|+
T Consensus 17 ~~~Cp~C~~PL~~~k~g-~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMRDKDG-KIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEEecCC-CEECCCCC
Confidence 3455 678998 64444 58899985
No 9
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=47.35 E-value=11 Score=24.32 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHH
Q 033517 40 KEISKELYEFCL 51 (117)
Q Consensus 40 k~ISkeLy~~~l 51 (117)
+.|+|+||||.-
T Consensus 31 rKINrdLfdFSt 42 (48)
T PF14077_consen 31 RKINRDLFDFST 42 (48)
T ss_pred HHHhHHHHhhhh
Confidence 459999999964
No 10
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=47.16 E-value=14 Score=30.04 Aligned_cols=39 Identities=28% Similarity=0.622 Sum_probs=28.4
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHhcCccChHHHhhccccc---eeeeceecc
Q 033517 27 QKSRYIFDLYYRRKEISKELYEFCLDQGYADCNLIAKWKKPG---YERLCCLRC 77 (117)
Q Consensus 27 qrSRYIydlyYk~k~ISkeLy~~~lk~~yaD~~LIaKWkK~G---YE~LCCl~C 77 (117)
+.+|.+|- .-...++.++|+.|+..| |++.| |+.-| ..|
T Consensus 25 r~~~~~~~--~~~~~~~~~~y~~L~~~G---------fRRsG~~~YrP~C-~~C 66 (240)
T PRK01305 25 RQERKLVA--DPSHPIAAELYDELLQAG---------FRRSGNIAYRPHC-DGC 66 (240)
T ss_pred ccceEEEe--cccccCCHHHHHHHHHcC---------cCcCCCeeecCCC-CCC
Confidence 34444443 234468999999999999 99999 88886 344
No 11
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=45.59 E-value=9.7 Score=22.06 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=11.2
Q ss_pred cccchhhhhhhhhhhhhhhHH
Q 033517 25 AHQKSRYIFDLYYRRKEISKE 45 (117)
Q Consensus 25 ~hqrSRYIydlyYk~k~ISke 45 (117)
-|.|+|||- +.-||.|
T Consensus 4 ~hprNrYV~-----eh~ls~e 19 (28)
T PF12368_consen 4 VHPRNRYVK-----EHGLSEE 19 (28)
T ss_pred cCcchhhHH-----hcCCCHH
Confidence 388999984 5556655
No 12
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=41.83 E-value=15 Score=31.86 Aligned_cols=58 Identities=28% Similarity=0.667 Sum_probs=42.1
Q ss_pred ChHHHhhccccceeeeceecceecC-----------------CCCC-CcceEeeccc-cc---cccceeeccccc----c
Q 033517 57 DCNLIAKWKKPGYERLCCLRCMQPR-----------------DHNF-QTTCVCRVPK-NL---REEKVIECVHCG----C 110 (117)
Q Consensus 57 D~~LIaKWkK~GYE~LCCl~CIq~~-----------------~~n~-gttCICRVPk-~l---~~~~~~~Cv~CG----C 110 (117)
+..|+--|-|.-|+=-|+..+..+- ++|| |.-|+|-+|- .+ +++.++||+-|- |
T Consensus 81 ~H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHc 160 (345)
T KOG2752|consen 81 GHELVELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFHC 160 (345)
T ss_pred CceeeeccccCCcccccccccccccccccccccccccchhhhhhhhcceeEEecCCCCCccccccceeeeEEeccchhcc
Confidence 4456667888888888876654332 3566 8999998877 53 445679999999 9
Q ss_pred cccc
Q 033517 111 RGCA 114 (117)
Q Consensus 111 ~GCa 114 (117)
-||.
T Consensus 161 e~c~ 164 (345)
T KOG2752|consen 161 EGCM 164 (345)
T ss_pred cccC
Confidence 9985
No 13
>PRK00420 hypothetical protein; Validated
Probab=40.68 E-value=13 Score=27.39 Aligned_cols=22 Identities=32% Similarity=0.818 Sum_probs=15.0
Q ss_pred cce-Eeeccc-cccccceeeccccc
Q 033517 87 TTC-VCRVPK-NLREEKVIECVHCG 109 (117)
Q Consensus 87 ttC-ICRVPk-~l~~~~~~~Cv~CG 109 (117)
.+| .|-.|. .+. +..+.|++||
T Consensus 24 ~~CP~Cg~pLf~lk-~g~~~Cp~Cg 47 (112)
T PRK00420 24 KHCPVCGLPLFELK-DGEVVCPVHG 47 (112)
T ss_pred CCCCCCCCcceecC-CCceECCCCC
Confidence 455 677787 663 4468888887
No 14
>PTZ00087 thrombosponding-related protein; Provisional
Probab=39.82 E-value=15 Score=31.61 Aligned_cols=19 Identities=37% Similarity=0.870 Sum_probs=16.9
Q ss_pred hhhhhhhhhhhhhHHHHHH
Q 033517 31 YIFDLYYRRKEISKELYEF 49 (117)
Q Consensus 31 YIydlyYk~k~ISkeLy~~ 49 (117)
-+|.+||++|.-.|||||=
T Consensus 314 ily~ify~~k~~ekelyen 332 (340)
T PTZ00087 314 ILYHIFYKKKGAEKELYEN 332 (340)
T ss_pred HHHHHhhhccchHHHHHHh
Confidence 3699999999999999984
No 15
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=37.11 E-value=22 Score=27.21 Aligned_cols=16 Identities=31% Similarity=0.729 Sum_probs=13.0
Q ss_pred hhHHHHHHHHhcCccC
Q 033517 42 ISKELYEFCLDQGYAD 57 (117)
Q Consensus 42 ISkeLy~~~lk~~yaD 57 (117)
+=|.|||||+++++--
T Consensus 11 LlRA~yeW~~Dn~~TP 26 (138)
T PRK11798 11 LLRALYEWIVDNGLTP 26 (138)
T ss_pred HHHHHHHHHhhCCCCc
Confidence 5578999999999643
No 16
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.48 E-value=19 Score=31.81 Aligned_cols=40 Identities=10% Similarity=0.287 Sum_probs=31.4
Q ss_pred ceeeecccchhhhhhhhhhhhhhhHHHHHHHHhcCccChHHHhhc
Q 033517 20 PIFKIAHQKSRYIFDLYYRRKEISKELYEFCLDQGYADCNLIAKW 64 (117)
Q Consensus 20 pI~rI~hqrSRYIydlyYk~k~ISkeLy~~~lk~~yaD~~LIaKW 64 (117)
.|-++|++-+ -+| +..|+=++|+|++|+++| +|..++..+
T Consensus 125 ~~~~~~~~~~---~~~-~~~~~~~~~~~~~L~~~g-V~~~~~~~l 164 (407)
T PRK12726 125 ELAALNRELA---VKM-REEREQNSDFVKFLKGRG-ISDTYVADF 164 (407)
T ss_pred HHHHHHHHHH---HHh-hhhhcccHHHHHHHHHcC-CCHHHHHHH
Confidence 4667788777 788 777776789999999999 666666655
No 17
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=35.12 E-value=14 Score=21.59 Aligned_cols=16 Identities=38% Similarity=0.854 Sum_probs=11.1
Q ss_pred cccccceeeccccccc
Q 033517 96 NLREEKVIECVHCGCR 111 (117)
Q Consensus 96 ~l~~~~~~~Cv~CGC~ 111 (117)
+++....+.|..||.+
T Consensus 11 ~~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 11 ELKPGDPIRCPECGHR 26 (32)
T ss_dssp -BSTSSTSSBSSSS-S
T ss_pred EcCCCCcEECCcCCCe
Confidence 3555667999999986
No 18
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=34.79 E-value=15 Score=26.21 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=7.6
Q ss_pred cccccccCCC
Q 033517 108 CGCRGCASGD 117 (117)
Q Consensus 108 CGC~GCaS~D 117 (117)
=+|.||+|++
T Consensus 51 GaC~gC~sS~ 60 (93)
T COG0694 51 GACSGCPSST 60 (93)
T ss_pred CcCCCCcccH
Confidence 3689999874
No 19
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=33.07 E-value=9.9 Score=25.21 Aligned_cols=13 Identities=46% Similarity=1.038 Sum_probs=11.5
Q ss_pred eeccccccccccC
Q 033517 103 IECVHCGCRGCAS 115 (117)
Q Consensus 103 ~~Cv~CGC~GCaS 115 (117)
-+||-||=.+|+|
T Consensus 23 RQCvlCGRWaC~s 35 (57)
T PF14445_consen 23 RQCVLCGRWACNS 35 (57)
T ss_pred HHHhhhchhhhhh
Confidence 4899999999987
No 20
>KOG4587 consensus Predicted membrane protein [Function unknown]
Probab=31.83 E-value=24 Score=32.57 Aligned_cols=49 Identities=35% Similarity=0.865 Sum_probs=32.7
Q ss_pred ccchhhhhhhhhhhhhhhHHHHHH---------------HHhcCccChHHHhhcc-----ccceeeeceec
Q 033517 26 HQKSRYIFDLYYRRKEISKELYEF---------------CLDQGYADCNLIAKWK-----KPGYERLCCLR 76 (117)
Q Consensus 26 hqrSRYIydlyYk~k~ISkeLy~~---------------~lk~~yaD~~LIaKWk-----K~GYE~LCCl~ 76 (117)
.+|+--||.|| .||++| |+|.- |.+|-=-|-.|.+-|- -+||-.||=+.
T Consensus 512 reRT~~VYSmy-Srk~~~-ev~~~~~~lkvnY~i~~l~~C~~e~rp~C~~~~iWD~edPan~g~t~lC~ll 580 (605)
T KOG4587|consen 512 RERTEHVYSMY-SRKQSS-EVYNQCAQLKVNYLIISLDECTNEVRPDCDLLAIWDDEDPANQGYTQLCHLL 580 (605)
T ss_pred HHHHHHHHHHh-ccccHH-HHHHHHHHhCCcEEEEEhhhhhcccCCCCCchhhccCcCccccCCchhHHHH
Confidence 37999999999 566554 66654 4445455677777774 35666666443
No 21
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=31.68 E-value=29 Score=27.16 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhcCc
Q 033517 42 ISKELYEFCLDQGY 55 (117)
Q Consensus 42 ISkeLy~~~lk~~y 55 (117)
+=|.|||||+++++
T Consensus 12 LlRA~yeWl~DN~~ 25 (155)
T COG2969 12 LLRALYEWLLDNQL 25 (155)
T ss_pred HHHHHHHHHhcCCC
Confidence 56789999999985
No 22
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=30.47 E-value=51 Score=22.76 Aligned_cols=21 Identities=14% Similarity=0.495 Sum_probs=16.7
Q ss_pred HHHHHHHhcCccChHHHhhcc
Q 033517 45 ELYEFCLDQGYADCNLIAKWK 65 (117)
Q Consensus 45 eLy~~~lk~~yaD~~LIaKWk 65 (117)
|=.+||+++||-|+.++++-.
T Consensus 46 Erl~yLv~~~YYe~~~l~~Ys 66 (82)
T PF08343_consen 46 ERLDYLVENDYYEKEVLDKYS 66 (82)
T ss_dssp HHHHHHHHTTSB-HHHHTTS-
T ss_pred HHHHHHHHcCcHHHHHHHhCC
Confidence 567999999999999988653
No 23
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=29.20 E-value=23 Score=23.19 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=16.0
Q ss_pred eeccc-cccccceeeccccccc
Q 033517 91 CRVPK-NLREEKVIECVHCGCR 111 (117)
Q Consensus 91 CRVPk-~l~~~~~~~Cv~CGC~ 111 (117)
|.||+ ++......+|..||=.
T Consensus 2 Cpv~~~~~~~~v~~~Cp~cGip 23 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDCGIP 23 (55)
T ss_pred CCCCccccccccCCcCCCCCCc
Confidence 77888 7766667899999843
No 24
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=27.94 E-value=31 Score=20.11 Aligned_cols=19 Identities=37% Similarity=0.892 Sum_probs=14.3
Q ss_pred eccc-cccc-cceeecccccc
Q 033517 92 RVPK-NLRE-EKVIECVHCGC 110 (117)
Q Consensus 92 RVPk-~l~~-~~~~~Cv~CGC 110 (117)
+||. +|.+ +..+.|.+||-
T Consensus 13 ~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 13 RVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EcCHHHcccCCcEEECCCCCc
Confidence 5788 6644 56799999974
No 25
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.48 E-value=23 Score=24.70 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=10.1
Q ss_pred HHHhhcccccee
Q 033517 59 NLIAKWKKPGYE 70 (117)
Q Consensus 59 ~LIaKWkK~GYE 70 (117)
.|.++|||.|++
T Consensus 36 ~L~~~wR~~G~~ 47 (74)
T COG3433 36 ALLERWRKRGAD 47 (74)
T ss_pred HHHHHHHHcCCc
Confidence 577999999975
No 26
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=24.60 E-value=38 Score=19.19 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=12.3
Q ss_pred eccc-ccc-ccceeeccccc
Q 033517 92 RVPK-NLR-EEKVIECVHCG 109 (117)
Q Consensus 92 RVPk-~l~-~~~~~~Cv~CG 109 (117)
+||. ++. .+..+.|.+||
T Consensus 13 ~v~~~~~~~~~~~v~C~~C~ 32 (38)
T TIGR02098 13 RVVDSQLGANGGKVRCGKCG 32 (38)
T ss_pred EeCHHHcCCCCCEEECCCCC
Confidence 5676 553 34468999997
No 27
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.97 E-value=67 Score=21.20 Aligned_cols=30 Identities=33% Similarity=0.645 Sum_probs=19.8
Q ss_pred hhhhhhhh------hhhhhHHHHHHHHhcCccChHHHhhccccc
Q 033517 31 YIFDLYYR------RKEISKELYEFCLDQGYADCNLIAKWKKPG 68 (117)
Q Consensus 31 YIydlyYk------~k~ISkeLy~~~lk~~yaD~~LIaKWkK~G 68 (117)
--|+||.. -+.|..+| | +...-|.+||.++
T Consensus 11 kA~e~y~~~~g~i~lkdIA~~L-------g-vs~~tIr~WK~~d 46 (60)
T PF10668_consen 11 KAFEIYKESNGKIKLKDIAEKL-------G-VSESTIRKWKSRD 46 (60)
T ss_pred HHHHHHHHhCCCccHHHHHHHH-------C-CCHHHHHHHhhhc
Confidence 45777753 23444444 5 7889999999774
No 28
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.62 E-value=44 Score=19.47 Aligned_cols=19 Identities=16% Similarity=0.651 Sum_probs=13.1
Q ss_pred eccc-cccc-cceeecccccc
Q 033517 92 RVPK-NLRE-EKVIECVHCGC 110 (117)
Q Consensus 92 RVPk-~l~~-~~~~~Cv~CGC 110 (117)
+||. ++.+ +..+.|.+||-
T Consensus 13 ~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 13 EIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred eCCHHHCCCCCcEEECCCCCC
Confidence 4666 5543 46799999984
No 29
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=22.26 E-value=44 Score=20.49 Aligned_cols=13 Identities=38% Similarity=1.050 Sum_probs=10.4
Q ss_pred ccceeeccccccc
Q 033517 99 EEKVIECVHCGCR 111 (117)
Q Consensus 99 ~~~~~~Cv~CGC~ 111 (117)
....+.|..||.+
T Consensus 16 ~~~~irC~~CG~r 28 (44)
T smart00659 16 SKDVVRCRECGYR 28 (44)
T ss_pred CCCceECCCCCce
Confidence 4567999999976
No 30
>PF13606 Ank_3: Ankyrin repeat
Probab=22.21 E-value=66 Score=17.55 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=13.0
Q ss_pred hHHHHHHHHhcCccChH
Q 033517 43 SKELYEFCLDQGYADCN 59 (117)
Q Consensus 43 SkeLy~~~lk~~yaD~~ 59 (117)
+.|+-+|||+.| +|.|
T Consensus 14 ~~e~v~~Ll~~g-advn 29 (30)
T PF13606_consen 14 NIEIVKYLLEHG-ADVN 29 (30)
T ss_pred CHHHHHHHHHcC-CCCC
Confidence 578999999988 7754
No 31
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.57 E-value=57 Score=18.08 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.2
Q ss_pred ccccceeeccccc
Q 033517 97 LREEKVIECVHCG 109 (117)
Q Consensus 97 l~~~~~~~Cv~CG 109 (117)
++......|.+||
T Consensus 11 r~~~v~f~CPnCG 23 (24)
T PF07754_consen 11 REQAVPFPCPNCG 23 (24)
T ss_pred cccCceEeCCCCC
Confidence 3335668999997
Done!