Query 033517
Match_columns 117
No_of_seqs 102 out of 149
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrw_A Phage integrase/site-sp 57.5 6 0.00021 25.4 2.2 24 44-67 84-107 (117)
2 2l6w_A Beta-type platelet-deri 60.3 2.5 8.5E-05 25.4 0.0 11 60-70 28-39 (39)
3 3lys_A Prophage PI2 protein 01 53.9 5.5 0.00019 25.2 1.5 28 44-71 80-107 (112)
4 2d4p_A Hypothetical protein TT 50.7 4.7 0.00016 29.2 0.8 47 26-72 59-118 (141)
5 3o70_A PHD finger protein 13; 48.9 6.7 0.00023 24.8 1.3 26 82-109 15-40 (68)
6 1ou8_A Stringent starvation pr 42.1 11 0.00039 26.8 1.7 14 42-55 12-25 (111)
7 1yfn_A Stringent starvation pr 40.9 12 0.00042 26.9 1.7 14 42-55 13-26 (118)
8 1ou9_A Stringent starvation pr 37.0 15 0.00052 26.8 1.7 14 42-55 12-25 (129)
9 3o7a_A PHD finger protein 13 v 35.8 11 0.00038 22.3 0.7 22 86-109 4-25 (52)
10 2kj5_A Phage integrase; GFT PS 35.1 24 0.00081 21.8 2.3 25 44-68 80-104 (116)
11 2khq_A Integrase; all-alpha, s 34.5 24 0.00083 21.4 2.2 23 44-66 76-98 (110)
12 2kkp_A Phage integrase; SAM-li 34.3 24 0.00081 21.6 2.2 24 44-67 83-106 (117)
13 2kob_A Uncharacterized protein 33.5 26 0.00087 21.2 2.2 22 44-65 74-95 (108)
14 2oxo_A Integrase; DNA-binding 33.0 16 0.00055 21.3 1.1 24 44-67 75-98 (103)
15 3epz_A DNA (cytosine-5)-methyl 33.0 22 0.00074 28.8 2.2 24 30-53 164-187 (268)
16 2key_A Putative phage integras 32.5 27 0.00091 21.4 2.2 24 44-67 83-106 (112)
17 2kiw_A INT protein; alpha, str 30.4 25 0.00084 21.5 1.7 25 44-68 73-97 (111)
18 2lv9_A Histone-lysine N-methyl 30.1 15 0.0005 24.6 0.7 22 87-110 29-50 (98)
19 2wbn_A G2P, terminase large su 29.1 12 0.0004 27.8 0.0 49 22-70 69-128 (212)
20 1we9_A PHD finger family prote 28.4 27 0.00092 21.0 1.6 26 83-109 3-29 (64)
21 2kd1_A DNA integration/recombi 27.3 30 0.001 21.3 1.8 25 44-68 81-105 (118)
22 3kqi_A GRC5, PHD finger protei 26.5 19 0.00064 22.7 0.6 27 82-109 6-32 (75)
23 1x4i_A Inhibitor of growth pro 25.2 25 0.00085 22.3 1.0 25 83-110 3-27 (70)
24 2i5u_A DNAD domain protein; st 24.1 24 0.00081 22.6 0.8 29 43-72 41-78 (83)
25 3h92_A Uncharacterized ATP-bin 21.2 37 0.0013 23.4 1.4 17 40-56 52-68 (92)
26 3i5p_A Nucleoporin NUP170; hel 20.9 40 0.0014 29.0 1.8 23 38-60 176-198 (525)
27 3a52_A Cold-active alkaline ph 20.8 34 0.0012 28.2 1.3 41 25-71 117-163 (400)
28 2hjq_A Hypothetical protein YQ 20.5 31 0.0011 24.6 0.9 20 38-57 23-42 (111)
29 2vnf_A ING 4, P29ING4, inhibit 20.4 22 0.00075 21.7 0.1 27 82-111 6-32 (60)
30 2kj9_A Integrase; DNA_BRE_C su 20.1 64 0.0022 20.4 2.3 24 44-67 84-107 (118)
No 1
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=57.53 E-value=6 Score=25.43 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCccChHHHhhcccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKP 67 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~ 67 (117)
+.+|+|++++|+++.|.++.-+.|
T Consensus 84 r~f~~~l~~~g~i~~nP~~~v~~p 107 (117)
T 3nrw_A 84 KNWLEYLARIDVVDEDLPEKVHVP 107 (117)
T ss_dssp HHHHHHHHHTTSSCTTSGGGCCCC
T ss_pred HHHHHHHHHcCCcccCHHHHccCC
Confidence 469999999999999998877655
No 2
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=60.34 E-value=2.5 Score=25.37 Aligned_cols=11 Identities=64% Similarity=1.274 Sum_probs=8.0
Q ss_pred HHhhcc-cccee
Q 033517 60 LIAKWK-KPGYE 70 (117)
Q Consensus 60 LIaKWk-K~GYE 70 (117)
||.+|+ ||-||
T Consensus 28 Li~~w~qKPrYe 39 (39)
T 2l6w_A 28 LIMLWQKKPRYE 39 (39)
Confidence 788998 55565
No 3
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=53.94 E-value=5.5 Score=25.15 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCccChHHHhhccccceee
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKPGYER 71 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~GYE~ 71 (117)
+.+++|.+++|+++.|-++.-+.+|-|-
T Consensus 80 ~~i~~~Av~~g~i~~NP~~~v~~~~~~~ 107 (112)
T 3lys_A 80 RASIQCLIEEGRLQKDFTTRAVVKGLEH 107 (112)
T ss_dssp HHHHHHHHHTTSCSSCTTSSTTCCCCCC
T ss_pred HHHHHHHHHCCCcccCccccceeccccc
Confidence 5799999999999999999999999773
No 4
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=50.75 E-value=4.7 Score=29.24 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=36.1
Q ss_pred ccchhhhhhhhhhhhhhhHHHHH----HHHhcCcc---------ChHHHhhccccceeee
Q 033517 26 HQKSRYIFDLYYRRKEISKELYE----FCLDQGYA---------DCNLIAKWKKPGYERL 72 (117)
Q Consensus 26 hqrSRYIydlyYk~k~ISkeLy~----~~lk~~ya---------D~~LIaKWkK~GYE~L 72 (117)
=.|.=|||||+|+++-|.+.|.+ |+.++|.. +....+-|.+.||++-
T Consensus 59 dg~~~~L~dl~~R~~GIG~~Ll~~a~~~a~~~G~~rv~L~~~~~N~~a~~fye~~Gf~~~ 118 (141)
T 2d4p_A 59 EATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALG 118 (141)
T ss_dssp SSEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEECCCTTCHHHHHHHHHTTCCCC
T ss_pred CCeEEEEeHHhhccccHHHHHHHHHHHHHHHCCCCEEEEEecccCHHHHHHHHHCCCEec
Confidence 56777999999999999998876 45555532 2457788999999764
No 5
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=48.94 E-value=6.7 Score=24.83 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=18.8
Q ss_pred CCCCCcceEeeccccccccceeeccccc
Q 033517 82 DHNFQTTCVCRVPKNLREEKVIECVHCG 109 (117)
Q Consensus 82 ~~n~gttCICRVPk~l~~~~~~~Cv~CG 109 (117)
+.+.+..|||+.|.. .+.+|+|..|.
T Consensus 15 ~~~~~~~CiC~~~~~--~~~MIqCd~C~ 40 (68)
T 3o70_A 15 YFQGLVTCFCMKPFA--GRPMIECNECH 40 (68)
T ss_dssp TTTTCCCSTTCCCCT--TCCEEECTTTC
T ss_pred CCCCceEeECCCcCC--CCCEEECCCCC
Confidence 345578899998853 23589998875
No 6
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=42.08 E-value=11 Score=26.75 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhcCc
Q 033517 42 ISKELYEFCLDQGY 55 (117)
Q Consensus 42 ISkeLy~~~lk~~y 55 (117)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (111)
T 1ou8_A 12 LLRAYYDWLVDNSF 25 (111)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 45789999999996
No 7
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=40.92 E-value=12 Score=26.88 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhcCc
Q 033517 42 ISKELYEFCLDQGY 55 (117)
Q Consensus 42 ISkeLy~~~lk~~y 55 (117)
+=|.+||||+++++
T Consensus 13 LiRA~yeWi~DN~~ 26 (118)
T 1yfn_A 13 LLRAFYEWLLDNQL 26 (118)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCC
Confidence 55789999999996
No 8
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=37.04 E-value=15 Score=26.82 Aligned_cols=14 Identities=14% Similarity=0.683 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhcCc
Q 033517 42 ISKELYEFCLDQGY 55 (117)
Q Consensus 42 ISkeLy~~~lk~~y 55 (117)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (129)
T 1ou9_A 12 LLRAYYDWLVDNSF 25 (129)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 45789999999996
No 9
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=35.80 E-value=11 Score=22.25 Aligned_cols=22 Identities=36% Similarity=0.797 Sum_probs=16.1
Q ss_pred CcceEeeccccccccceeeccccc
Q 033517 86 QTTCVCRVPKNLREEKVIECVHCG 109 (117)
Q Consensus 86 gttCICRVPk~l~~~~~~~Cv~CG 109 (117)
...|||+.|.. .+.+|+|-.|.
T Consensus 4 ~~~C~C~~~~~--~~~MI~Cd~C~ 25 (52)
T 3o7a_A 4 LVTCFCMKPFA--GRPMIECNECH 25 (52)
T ss_dssp CBCSTTCCBCT--TCCEEECTTTC
T ss_pred CeEEEeCCcCC--CCCEEEcCCCC
Confidence 45799998863 34689998875
No 10
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=35.10 E-value=24 Score=21.76 Aligned_cols=25 Identities=12% Similarity=0.359 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCccChHHHhhccccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKPG 68 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~G 68 (117)
+.+++|++++|+++.|-+..-+.+.
T Consensus 80 ~~~~~~A~~~~~i~~NP~~~i~~p~ 104 (116)
T 2kj5_A 80 KRMFNYAIKRHIIEYNPAAAFDPGD 104 (116)
T ss_dssp HHHHHHHHHTTSCSSCGGGGSCCCC
T ss_pred HHHHHHHHHcCccccCchhhCCCCC
Confidence 4789999999999988877666543
No 11
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=34.47 E-value=24 Score=21.41 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCccChHHHhhccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKK 66 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK 66 (117)
+.+|+|++++|+++.|-+..-+.
T Consensus 76 ~~~~~~a~~~~~i~~NP~~~v~~ 98 (110)
T 2khq_A 76 RNAFDDAIHEGYVIKNPTYKAEL 98 (110)
T ss_dssp HHHHHHHHHTTCCCCCGGGGCCC
T ss_pred HHHHHHHHHCCCcccCccccccc
Confidence 47899999999999887765543
No 12
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=34.28 E-value=24 Score=21.63 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCccChHHHhhcccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKP 67 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~ 67 (117)
+.+|+|++++|+++.|-...-+.+
T Consensus 83 ~~~~~~A~~~~~i~~nP~~~i~~~ 106 (117)
T 2kkp_A 83 HEAMSQARESGLLLQNPTEAAKPP 106 (117)
T ss_dssp HHHHHHHHTTTSCSSCGGGGSCCC
T ss_pred HHHHHHHHHCCCcccCccccCCCC
Confidence 467899999998888777655543
No 13
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=33.50 E-value=26 Score=21.15 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCccChHHHhhcc
Q 033517 44 KELYEFCLDQGYADCNLIAKWK 65 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWk 65 (117)
+.+|+|.+++|+++.|-+..-+
T Consensus 74 ~~~~~~A~~~~~i~~NP~~~v~ 95 (108)
T 2kob_A 74 SQIFRLAIENRAIDFNPADYVR 95 (108)
T ss_dssp HHHHHHHHHTTSSSSCGGGTCC
T ss_pred HHHHHHHHHcCCcccCccccCc
Confidence 4689999999998887766443
No 14
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=33.04 E-value=16 Score=21.32 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCccChHHHhhcccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKP 67 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~ 67 (117)
+.+|+|++++|+++.|-...-+.+
T Consensus 75 ~~~~~~a~~~~~i~~nP~~~v~~~ 98 (103)
T 2oxo_A 75 SDAFREAIAEGHITTNHVAATRAA 98 (103)
T ss_dssp HHHHHHHHHTTSCSSCTTC-----
T ss_pred HHHHHHHHHcCCCCCChHhhcCCC
Confidence 578999999999988776654443
No 15
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=33.04 E-value=22 Score=28.85 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.8
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhc
Q 033517 30 RYIFDLYYRRKEISKELYEFCLDQ 53 (117)
Q Consensus 30 RYIydlyYk~k~ISkeLy~~~lk~ 53 (117)
+=+|+.||.+--+|+++|++|.++
T Consensus 164 k~~~~~f~eK~~~s~~Vie~L~~~ 187 (268)
T 3epz_A 164 APIFGLMQEKIYISKIVVEFLQSN 187 (268)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 337999999999999999999997
No 16
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=32.52 E-value=27 Score=21.44 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCccChHHHhhcccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKP 67 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~ 67 (117)
+.+|+|++++|+++.|-...-+.|
T Consensus 83 r~~~~~a~~~~~i~~nP~~~v~~p 106 (112)
T 2key_A 83 KIYVSAAIKKGYMENDPFKDFGLE 106 (112)
T ss_dssp HHHHHHHHHTTSCCSCHHHHHTCC
T ss_pred HHHHHHHHHCCCcccCCcccCCCc
Confidence 368999999999998877665544
No 17
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=30.36 E-value=25 Score=21.50 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCccChHHHhhccccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKPG 68 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~G 68 (117)
+.+++|++++|+++.|-+..-+.+.
T Consensus 73 r~~~~~A~~~~~i~~nP~~~i~~pk 97 (111)
T 2kiw_A 73 NMIFKYAYDTRLIKAMPSEGIKRPK 97 (111)
T ss_dssp HHHHHHHHHTTSCSCCTTTTCCCCS
T ss_pred HHHHHHHHHhCChhhCccccCCCCC
Confidence 4688999999988887766555443
No 18
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.13 E-value=15 Score=24.55 Aligned_cols=22 Identities=27% Similarity=0.816 Sum_probs=16.3
Q ss_pred cceEeeccccccccceeecccccc
Q 033517 87 TTCVCRVPKNLREEKVIECVHCGC 110 (117)
Q Consensus 87 ttCICRVPk~l~~~~~~~Cv~CGC 110 (117)
+.|||++|.. .+.+|+|-.|.-
T Consensus 29 vrCiC~~~~~--~~~mi~Cd~C~~ 50 (98)
T 2lv9_A 29 TRCICGFTHD--DGYMICCDKCSV 50 (98)
T ss_dssp CCCTTSCCSC--SSCEEEBTTTCB
T ss_pred EEeECCCccC--CCcEEEcCCCCC
Confidence 6799999852 356899988753
No 19
>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A
Probab=29.07 E-value=12 Score=27.79 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=37.8
Q ss_pred eeecc-cchhhhhhhhhhhhhhhHHHHHHHHhcCc---------cChHHHhhcccc-cee
Q 033517 22 FKIAH-QKSRYIFDLYYRRKEISKELYEFCLDQGY---------ADCNLIAKWKKP-GYE 70 (117)
Q Consensus 22 ~rI~h-qrSRYIydlyYk~k~ISkeLy~~~lk~~y---------aD~~LIaKWkK~-GYE 70 (117)
+.+.. .+.=||++-||.++....++.+++.+.+| |.+.+|+-.++. |+.
T Consensus 69 ~~~d~~~~~lyi~~E~y~~~~~~~~~a~~i~~~~~~~~~i~~DsA~~~~I~~l~~~~G~~ 128 (212)
T 2wbn_A 69 WHYDKRKNRIYAIDELVDHKVSLKRTADFVRKNKYESARIIADSSEPRSIDALKLEHGIN 128 (212)
T ss_dssp EEEETTTTEEEEEEEEEESSCCHHHHHHHHHHTTCTTSCEEECTTCHHHHHHHHHTTCCT
T ss_pred EEEECCCCEEEEEEehhhcCCCHHHHHHHHHHcCCCCceeeeCCcCHHHHHHHHHhCCcc
Confidence 34443 46679999999888888889998887665 577899999886 873
No 20
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.42 E-value=27 Score=21.00 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCCCcce-Eeeccccccccceeeccccc
Q 033517 83 HNFQTTC-VCRVPKNLREEKVIECVHCG 109 (117)
Q Consensus 83 ~n~gttC-ICRVPk~l~~~~~~~Cv~CG 109 (117)
.+.++.| ||+-|-. ..+.+|+|..|.
T Consensus 3 ~~e~~~C~~C~~~~~-~~~~mI~Cd~C~ 29 (64)
T 1we9_A 3 SGSSGQCGACGESYA-ADEFWICCDLCE 29 (64)
T ss_dssp CSSCCCCSSSCCCCC-SSSCEEECSSSC
T ss_pred CCCCCCCCCCCCccC-CCCCEEEccCCC
Confidence 3557789 9998852 124578988763
No 21
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=27.34 E-value=30 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCccChHHHhhccccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKPG 68 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~G 68 (117)
+.+|+|++++|+++.|-+..-+.+.
T Consensus 81 ~~~~~~a~~~~~i~~nP~~~i~~~k 105 (118)
T 2kd1_A 81 RNSLEHAIDLELITKNVAAKTKLPK 105 (118)
T ss_dssp HHHHHHHHHTTSCSSCTTTTCCCCS
T ss_pred HHHHHHHHHcCCcccCccccccCCC
Confidence 4688999999988887766555443
No 22
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=26.49 E-value=19 Score=22.71 Aligned_cols=27 Identities=33% Similarity=0.759 Sum_probs=19.0
Q ss_pred CCCCCcceEeeccccccccceeeccccc
Q 033517 82 DHNFQTTCVCRVPKNLREEKVIECVHCG 109 (117)
Q Consensus 82 ~~n~gttCICRVPk~l~~~~~~~Cv~CG 109 (117)
..+.+..|||+.|-.- .+.+|+|..|.
T Consensus 6 ~~~~~~yCiC~~~~~~-~~~MI~Cd~C~ 32 (75)
T 3kqi_A 6 MATVPVYCVCRLPYDV-TRFMIECDACK 32 (75)
T ss_dssp TCCCCEETTTTEECCT-TSCEEECTTTC
T ss_pred CCCCeeEEECCCcCCC-CCCEEEcCCCC
Confidence 3456789999988521 34589998875
No 23
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.18 E-value=25 Score=22.27 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=18.8
Q ss_pred CCCCcceEeeccccccccceeecccccc
Q 033517 83 HNFQTTCVCRVPKNLREEKVIECVHCGC 110 (117)
Q Consensus 83 ~n~gttCICRVPk~l~~~~~~~Cv~CGC 110 (117)
.+-..-|||+-|. .+.+|+|-+|.|
T Consensus 3 ~~~~~yC~C~~~~---~g~MI~CD~cdC 27 (70)
T 1x4i_A 3 SGSSGYCICNQVS---YGEMVGCDNQDC 27 (70)
T ss_dssp CSCCCCSTTSCCC---CSSEECCSCTTC
T ss_pred CCCCeEEEcCCCC---CCCEeEeCCCCC
Confidence 4556789998773 346899999887
No 24
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=24.14 E-value=24 Score=22.57 Aligned_cols=29 Identities=24% Similarity=0.680 Sum_probs=18.8
Q ss_pred hHHH----HHHHHhcC-----ccChHHHhhccccceeee
Q 033517 43 SKEL----YEFCLDQG-----YADCNLIAKWKKPGYERL 72 (117)
Q Consensus 43 SkeL----y~~~lk~~-----yaD~~LIaKWkK~GYE~L 72 (117)
|.|| ++.++.++ |+|+=|.. |+++|...+
T Consensus 41 ~~elI~~A~~~av~~~~~~~~Yi~~IL~~-W~~~gi~T~ 78 (83)
T 2i5u_A 41 AEQLIVKAIEIAIDANARNYNYINAILKD-WEQRGFKSV 78 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHH-HHHHTCCC-
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCCCH
Confidence 6666 67776655 66665544 999987643
No 25
>3h92_A Uncharacterized ATP-binding protein mjecl15; protein with unknown function, structural genomics, PSI; HET: PG6; 2.20A {Methanocaldococcus jannaschii}
Probab=21.22 E-value=37 Score=23.40 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHhcCcc
Q 033517 40 KEISKELYEFCLDQGYA 56 (117)
Q Consensus 40 k~ISkeLy~~~lk~~ya 56 (117)
..|++++|.||++++..
T Consensus 52 ~~I~~~i~~~LIk~NIL 68 (92)
T 3h92_A 52 SKIKRKIRIFLIKENIL 68 (92)
T ss_dssp GGSCHHHHHHHHHTTSE
T ss_pred hhccHHHHHHHHHhcee
Confidence 34999999999998753
No 26
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=20.93 E-value=40 Score=28.99 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=17.4
Q ss_pred hhhhhhHHHHHHHHhcCccChHH
Q 033517 38 RRKEISKELYEFCLDQGYADCNL 60 (117)
Q Consensus 38 k~k~ISkeLy~~~lk~~yaD~~L 60 (117)
+.+.+--.||+|++.+|..|.-|
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL 198 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLL 198 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGG
T ss_pred ChHHHHHHHHHHHHhCCCcchhh
Confidence 44455567999999999887654
No 27
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Probab=20.82 E-value=34 Score=28.22 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=26.9
Q ss_pred cccchhhhhhhhhhhhhhhHHHHHHHHhc------CccChHHHhhccccceee
Q 033517 25 AHQKSRYIFDLYYRRKEISKELYEFCLDQ------GYADCNLIAKWKKPGYER 71 (117)
Q Consensus 25 ~hqrSRYIydlyYk~k~ISkeLy~~~lk~------~yaD~~LIaKWkK~GYE~ 71 (117)
.|..+|-=| ..|..+|.+-=++- .|.+.+||..|+.+||.-
T Consensus 117 ah~~~R~~~------~~IA~ql~~~~~dv~~GGG~~~f~~~L~~~~~~~Gy~~ 163 (400)
T 3a52_A 117 THNESRKNY------EAIAADMLKSDADVILGGGRKYFSEALVSQFSAKGYQH 163 (400)
T ss_dssp CCBSCTTCH------HHHHHHHHHHTCSEEEEECGGGCCHHHHHHHHHTTCEE
T ss_pred cCCCccccH------HHHHHHHhhcCCeEEEeCChhccChHHHHHHHHCCCEE
Confidence 456666433 36777776532221 345889999999999974
No 28
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=20.49 E-value=31 Score=24.58 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.3
Q ss_pred hhhhhhHHHHHHHHhcCccC
Q 033517 38 RRKEISKELYEFCLDQGYAD 57 (117)
Q Consensus 38 k~k~ISkeLy~~~lk~~yaD 57 (117)
..+.+++++|+||-++.|.+
T Consensus 23 ~Ee~V~Kk~Y~YL~~Ne~F~ 42 (111)
T 2hjq_A 23 VSQTVPKKLYEYLNENPYFI 42 (111)
T ss_dssp CEEEECHHHHHHHHHSTTEE
T ss_pred chhhhhHHHHHHhcCCCcEE
Confidence 45679999999999987643
No 29
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=20.45 E-value=22 Score=21.71 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=17.9
Q ss_pred CCCCCcceEeeccccccccceeeccccccc
Q 033517 82 DHNFQTTCVCRVPKNLREEKVIECVHCGCR 111 (117)
Q Consensus 82 ~~n~gttCICRVPk~l~~~~~~~Cv~CGC~ 111 (117)
|.+-...|||+-|. .+.++.|-+|.|.
T Consensus 6 d~~e~~~C~C~~~~---~g~mi~CD~cdC~ 32 (60)
T 2vnf_A 6 DPNEPTYCLCHQVS---YGEMIGCDNPDCS 32 (60)
T ss_dssp ---CCEETTTTEEC---CSEEEECSCTTCS
T ss_pred CCCCCCEEECCCcC---CCCEEEeCCCCCC
Confidence 45667789998764 2568999997764
No 30
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=20.14 E-value=64 Score=20.38 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCccChHHHhhcccc
Q 033517 44 KELYEFCLDQGYADCNLIAKWKKP 67 (117)
Q Consensus 44 keLy~~~lk~~yaD~~LIaKWkK~ 67 (117)
+.+|+|.++.|+++.|-++.-+.+
T Consensus 84 ~~if~~Av~~g~i~~NP~~~v~~~ 107 (118)
T 2kj9_A 84 TAIMRYAVQQKMIRFNPAYDLEGA 107 (118)
T ss_dssp HHHHHHHHHTTSSSSCHHHHCCSC
T ss_pred HHHHHHHHHcCCcccCchHHHHHH
Confidence 478999999999998877765544
Done!