Query 033517
Match_columns 117
No_of_seqs 102 out of 149
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 04:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033517.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033517hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ou8a_ b.136.1.1 (A:) Stringe 39.8 6.2 0.00045 26.2 1.7 15 42-56 8-22 (106)
2 d1twfl_ g.41.9.2 (L:) RBP12 su 37.9 3.3 0.00024 24.0 0.1 16 96-111 15-30 (46)
3 d1yfna1 b.136.1.1 (A:4-111) St 36.9 7.3 0.00053 25.9 1.7 15 42-56 10-24 (108)
4 d1a0pa1 a.60.9.1 (A:3-100) Rec 36.1 7.3 0.00053 23.6 1.5 16 45-60 79-94 (98)
5 d2qtva4 d.109.2.1 (A:627-768) 28.6 4.5 0.00033 28.1 -0.5 12 59-70 42-53 (142)
6 d1weva_ g.50.1.2 (A:) PHD fing 28.0 10 0.00073 22.7 1.2 24 86-109 16-40 (88)
7 d1z4ea1 d.108.1.1 (A:4-153) Tr 27.2 10 0.00076 23.0 1.1 35 37-71 94-141 (150)
8 d2gana1 d.108.1.1 (A:1-182) Hy 26.5 8.6 0.00063 25.0 0.7 55 18-72 95-165 (182)
9 d1zq1c1 a.182.1.2 (C:457-512) 25.7 18 0.0013 20.5 2.0 19 45-64 31-49 (56)
10 d2prra1 a.152.1.3 (A:5-194) Un 25.1 23 0.0017 23.3 2.8 34 29-62 123-156 (190)
11 d1cjwa_ d.108.1.1 (A:) Seroton 23.5 27 0.002 21.3 2.7 43 30-72 90-147 (166)
12 d2cuja1 a.4.1.18 (A:8-108) Tra 23.2 15 0.0011 23.4 1.4 16 43-58 85-100 (101)
13 d1m0ja_ g.46.1.1 (A:) Metallot 20.7 13 0.00092 19.2 0.5 11 103-113 17-27 (28)
14 d2atra1 d.108.1.1 (A:1-137) Pr 20.3 22 0.0016 21.7 1.7 36 37-72 78-123 (137)
No 1
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=39.76 E-value=6.2 Score=26.16 Aligned_cols=15 Identities=13% Similarity=0.651 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhcCcc
Q 033517 42 ISKELYEFCLDQGYA 56 (117)
Q Consensus 42 ISkeLy~~~lk~~ya 56 (117)
+=|.+||||+++++-
T Consensus 8 LiRA~y~W~~Dn~~T 22 (106)
T d1ou8a_ 8 LLRAYYDWLVDNSFT 22 (106)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHCCCC
Confidence 447899999999963
No 2
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.91 E-value=3.3 Score=24.04 Aligned_cols=16 Identities=31% Similarity=0.850 Sum_probs=13.5
Q ss_pred cccccceeeccccccc
Q 033517 96 NLREEKVIECVHCGCR 111 (117)
Q Consensus 96 ~l~~~~~~~Cv~CGC~ 111 (117)
.|..+..+.|..||++
T Consensus 15 ~l~~~d~irCreCG~R 30 (46)
T d1twfl_ 15 SLSRTDAVRCKDCGHR 30 (46)
T ss_dssp CCCTTSTTCCSSSCCC
T ss_pred EeCCCCcEEeccCCcE
Confidence 5677788999999987
No 3
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=36.94 E-value=7.3 Score=25.87 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.4
Q ss_pred hhHHHHHHHHhcCcc
Q 033517 42 ISKELYEFCLDQGYA 56 (117)
Q Consensus 42 ISkeLy~~~lk~~ya 56 (117)
+=|.|||||+++++-
T Consensus 10 liRA~y~W~~Dn~~T 24 (108)
T d1yfna1 10 LLRAFYEWLLDNQLT 24 (108)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHCCCC
Confidence 557899999999954
No 4
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=36.05 E-value=7.3 Score=23.56 Aligned_cols=16 Identities=6% Similarity=0.397 Sum_probs=13.6
Q ss_pred HHHHHHHhcCccChHH
Q 033517 45 ELYEFCLDQGYADCNL 60 (117)
Q Consensus 45 eLy~~~lk~~yaD~~L 60 (117)
-+|.||.++|+++.|=
T Consensus 79 ~ff~~l~~~~~i~~nP 94 (98)
T d1a0pa1 79 RLFQYLYREKFREDDP 94 (98)
T ss_dssp HHHHHHHHTTSSSSCT
T ss_pred HHHHHHHHCCCcCcCc
Confidence 4699999999998763
No 5
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.59 E-value=4.5 Score=28.14 Aligned_cols=12 Identities=50% Similarity=1.212 Sum_probs=10.3
Q ss_pred HHHhhcccccee
Q 033517 59 NLIAKWKKPGYE 70 (117)
Q Consensus 59 ~LIaKWkK~GYE 70 (117)
.-||.|+|+||.
T Consensus 42 ~~Ia~Wrkagy~ 53 (142)
T d2qtva4 42 EQIAQWRKAGYQ 53 (142)
T ss_dssp HHHHHHHHHTGG
T ss_pred cHHHHHHHcCCc
Confidence 568999999984
No 6
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.02 E-value=10 Score=22.75 Aligned_cols=24 Identities=29% Similarity=0.730 Sum_probs=16.0
Q ss_pred Ccce-Eeeccccccccceeeccccc
Q 033517 86 QTTC-VCRVPKNLREEKVIECVHCG 109 (117)
Q Consensus 86 gttC-ICRVPk~l~~~~~~~Cv~CG 109 (117)
+.+| ||+.+-..+.+.++.|..|+
T Consensus 16 ~~~C~iC~~~~~~~~~~~v~Cd~C~ 40 (88)
T d1weva_ 16 GLACVVCRQMTVASGNQLVECQECH 40 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSC
T ss_pred cCCccCCCCccCCCCCeEEEcCCCC
Confidence 3456 89876544556688888764
No 7
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]}
Probab=27.16 E-value=10 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.363 Sum_probs=24.8
Q ss_pred hhhhhhhHHHHHHHHhc----Ccc---------ChHHHhhccccceee
Q 033517 37 YRRKEISKELYEFCLDQ----GYA---------DCNLIAKWKKPGYER 71 (117)
Q Consensus 37 Yk~k~ISkeLy~~~lk~----~ya---------D~~LIaKWkK~GYE~ 71 (117)
|+++-|.+.|++++++. |+- +...++-|+|.||++
T Consensus 94 ~rg~Gig~~l~~~~~~~a~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~ 141 (150)
T d1z4ea1 94 ARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGFKA 141 (150)
T ss_dssp STTSSHHHHHHHHHHHHHHHTTEEEEEEEEETTCTTHHHHHHHHTCEE
T ss_pred HcCCChhHHHHHHHHHHHHHcCCCEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 56777999888886553 321 344788899999975
No 8
>d2gana1 d.108.1.1 (A:1-182) Hypothetical protein PH0736 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.55 E-value=8.6 Score=24.96 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=36.0
Q ss_pred ccceeeecccchhhhhhhh----hhhhhhhHHHHHHHHh----cCc--------cChHHHhhccccceeee
Q 033517 18 LWPIFKIAHQKSRYIFDLY----YRRKEISKELYEFCLD----QGY--------ADCNLIAKWKKPGYERL 72 (117)
Q Consensus 18 lWpI~rI~hqrSRYIydly----Yk~k~ISkeLy~~~lk----~~y--------aD~~LIaKWkK~GYE~L 72 (117)
.|..+.-+..++-||..|+ |+.+-|.+.|.+++++ .|+ .+...+.-.+|.||+.+
T Consensus 95 ~~~~~~~~~~~~~~I~~l~V~p~~rg~GiG~~Ll~~~~~~ak~~G~~~~l~~~~~n~~a~~fY~k~GF~~~ 165 (182)
T d2gana1 95 WWVPEELMNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLGKDPYVVTFPNLEAYSYYYMKKGFREI 165 (182)
T ss_dssp TTCCGGGCSTTEEEEEEEEECTTSTTSSHHHHHHHHHHHHHHHTTCEEEEEECGGGSHHHHHHHTTTEEEE
T ss_pred cccccccCCCCEEEEEEEEECHhhcCCCHHHHHHHHHHHHHHHcCCeEEEEEccCCHHHHHHHHHCCCEEe
Confidence 4444445556677777776 7788888888877664 443 12334567788888764
No 9
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=25.70 E-value=18 Score=20.49 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=15.9
Q ss_pred HHHHHHHhcCccChHHHhhc
Q 033517 45 ELYEFCLDQGYADCNLIAKW 64 (117)
Q Consensus 45 eLy~~~lk~~yaD~~LIaKW 64 (117)
+.|+=.++.| +|+.|+|.|
T Consensus 31 ~~Fee~v~~~-~~pklaAnw 49 (56)
T d1zq1c1 31 ELFEELVSMG-VKPSLAASI 49 (56)
T ss_dssp HHHHHHHHTT-CSTTHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHH
Confidence 4777788766 999999999
No 10
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=25.15 E-value=23 Score=23.28 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=27.9
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhcCccChHHHh
Q 033517 29 SRYIFDLYYRRKEISKELYEFCLDQGYADCNLIA 62 (117)
Q Consensus 29 SRYIydlyYk~k~ISkeLy~~~lk~~yaD~~LIa 62 (117)
-+|+-.+--....||.++++-|...||-|+.++.
T Consensus 123 l~~a~~~~~~~~~v~d~~~~~L~~~g~s~~eive 156 (190)
T d2prra1 123 LDFALKVCKASHEVNEADFEALREHGFTDEDAWD 156 (190)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHcCCCHHHHHH
Confidence 4677777666778999999999999999987753
No 11
>d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis aries) [TaxId: 9940]}
Probab=23.51 E-value=27 Score=21.26 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=30.6
Q ss_pred hhhhhhh----hhhhhhhHHHHHHHHh----cCcc-------ChHHHhhccccceeee
Q 033517 30 RYIFDLY----YRRKEISKELYEFCLD----QGYA-------DCNLIAKWKKPGYERL 72 (117)
Q Consensus 30 RYIydly----Yk~k~ISkeLy~~~lk----~~ya-------D~~LIaKWkK~GYE~L 72 (117)
-||.+++ |+++-|.+.|++.+++ ++-+ +.+.|+-|+|.||+..
T Consensus 90 ~~i~~l~V~p~~rg~GiG~~Ll~~~~~~~~~~~~~~~i~l~~~~~ai~fY~k~GF~~~ 147 (166)
T d1cjwa_ 90 AHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPA 147 (166)
T ss_dssp EEEEEEEECTTSTTSSHHHHHHHHHHHHHHTSTTCCEEEEEECGGGHHHHHTTTEEEE
T ss_pred EEEEEEEECHHHccCCHHHHHHHHHHHHHHHhCCCceEEEecCHHHHHHHHHCCCEEE
Confidence 3455554 6788899998877654 3322 6778899999999875
No 12
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.18 E-value=15 Score=23.43 Aligned_cols=16 Identities=25% Similarity=0.816 Sum_probs=12.6
Q ss_pred hHHHHHHHHhcCccCh
Q 033517 43 SKELYEFCLDQGYADC 58 (117)
Q Consensus 43 SkeLy~~~lk~~yaD~ 58 (117)
...||||++++|++.+
T Consensus 85 ~~rIydfl~~~GWi~~ 100 (101)
T d2cuja1 85 TRKIYDFLIREGYITK 100 (101)
T ss_dssp HHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHccCccc
Confidence 3568999999998764
No 13
>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=20.73 E-value=13 Score=19.23 Aligned_cols=11 Identities=36% Similarity=1.497 Sum_probs=8.4
Q ss_pred eeccccccccc
Q 033517 103 IECVHCGCRGC 113 (117)
Q Consensus 103 ~~Cv~CGC~GC 113 (117)
-.|.+|.|++|
T Consensus 17 ctctncscksc 27 (28)
T d1m0ja_ 17 CTCTNCSCKSC 27 (28)
T ss_dssp CCSSSCCCTTT
T ss_pred eeecCcccccC
Confidence 46788888877
No 14
>d2atra1 d.108.1.1 (A:1-137) Probable acetyltransferase SP0256 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.34 E-value=22 Score=21.74 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=27.7
Q ss_pred hhhhhhhHHHHHHHHhcC----------ccChHHHhhccccceeee
Q 033517 37 YRRKEISKELYEFCLDQG----------YADCNLIAKWKKPGYERL 72 (117)
Q Consensus 37 Yk~k~ISkeLy~~~lk~~----------yaD~~LIaKWkK~GYE~L 72 (117)
|+++-|.+.|.+.+++.= .++...+.-|+|.||+.+
T Consensus 78 ~rg~GiG~~Ll~~~~~~~~~~~~~~i~l~~~~~a~~fY~k~GF~~~ 123 (137)
T d2atra1 78 YQRQGIGSSLMKEALGNFKEAYQVQLATEETEKNVGFYRSMGFEIL 123 (137)
T ss_dssp SCSSSHHHHHHHHHHGGGTTCSEEECCCCCCHHHHHHHHHTTCCCG
T ss_pred HcCchHHHHHHHHHHHHHHHCCCeEEEEeecHHHHHHHHhCCCEEC
Confidence 578889999999987752 245667888999999763
Done!