BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033520
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 25/29 (86%)
Query: 73 MEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
++ F+G+ E+PRTQ +K+IW +IK+H+LQ
Sbjct: 130 LQKFLGSEELPRTQVVKMIWQYIKEHDLQ 158
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 63 IMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
+ KP ++SP++ F+G ++ R Q +K +W +IK H+LQ
Sbjct: 117 LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQ 155
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 69 VSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
+S + + +G E+ RT+ ++ +WA+IK HNLQ
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQ 158
>sp|Q6LNB3|HEM1_PHOPR Glutamyl-tRNA reductase OS=Photobacterium profundum GN=hemA PE=3
SV=1
Length = 420
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAP 80
P HL V +TASP P+ GK +K RR P + + P
Sbjct: 235 PEHLHRADIVISSTASPLPIVGKGMVEKAIKARRHQPMLFVDIAVP 280
>sp|B6EHH4|HEM1_ALISL Glutamyl-tRNA reductase OS=Aliivibrio salmonicida (strain LFI1238)
GN=hemA PE=3 SV=1
Length = 418
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAP 80
P HL + +TASP P+ GK +K RR P + + P
Sbjct: 236 PEHLSKADIIISSTASPLPIIGKGMVESALKQRRHQPMLFVDIAVP 281
>sp|Q7MMY7|HEM1_VIBVY Glutamyl-tRNA reductase OS=Vibrio vulnificus (strain YJ016) GN=hemA
PE=3 SV=1
Length = 419
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKL 90
P HL V +TASP P+ GK +K RR P + + P Q +L
Sbjct: 235 PNHLAKADIVISSTASPLPIIGKGMVETALKQRRHQPMLLVDIAVPRDVEAQVGEL 290
>sp|Q8DFF8|HEM1_VIBVU Glutamyl-tRNA reductase OS=Vibrio vulnificus (strain CMCP6) GN=hemA
PE=3 SV=1
Length = 419
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAP 80
P HL V +TASP P+ GK +K RR P + + P
Sbjct: 235 PNHLAKADIVISSTASPLPIIGKGMVETALKQRRHQPMLLVDIAVP 280
>sp|A7MY81|HEM1_VIBHB Glutamyl-tRNA reductase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=hemA PE=3 SV=1
Length = 418
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAH 94
P HL V +TASP P+ GK +K RR P + + P Q +L A+
Sbjct: 235 PDHLPRADIVISSTASPLPIIGKGMVETALKKRRHQPMLLVDIAVPRDVEAQVGELSDAY 294
Query: 95 I 95
+
Sbjct: 295 L 295
>sp|A1U368|HEM1_MARAV Glutamyl-tRNA reductase OS=Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8) GN=hemA PE=3 SV=1
Length = 429
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAP 80
P HL V V +TASP P+ GK +K R+ P + P
Sbjct: 235 PDHLSDVDIVISSTASPLPILGKGAVERALKKRKHRPYFMVDIAVP 280
>sp|C3LPI5|HEM1_VIBCM Glutamyl-tRNA reductase OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=hemA PE=3 SV=1
Length = 419
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKL 90
P +L V +TASP P+ GK +K RR P + + P Q KL
Sbjct: 235 PDYLAQADIVISSTASPLPIIGKGMVESALKARRHQPMLLVDIAVPRDIEPQVGKL 290
>sp|Q9KQ24|HEM1_VIBCH Glutamyl-tRNA reductase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=hemA PE=3 SV=1
Length = 419
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKL 90
P +L V +TASP P+ GK +K RR P + + P Q KL
Sbjct: 235 PDYLAQADIVISSTASPLPIIGKGMVESALKARRHQPMLLVDIAVPRDIEPQVGKL 290
>sp|A5F697|HEM1_VIBC3 Glutamyl-tRNA reductase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=hemA PE=3 SV=1
Length = 419
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKL 90
P +L V +TASP P+ GK +K RR P + + P Q KL
Sbjct: 235 PDYLAQADIVISSTASPLPIIGKGMVESALKARRHQPMLLVDIAVPRDIEPQVGKL 290
>sp|B7VKH2|HEM1_VIBSL Glutamyl-tRNA reductase OS=Vibrio splendidus (strain LGP32) GN=hemA
PE=3 SV=1
Length = 419
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQ 86
P HL V +TASP P+ GK +K R+ P + + P +Q
Sbjct: 235 PDHLHRADIVISSTASPLPIIGKGMVETALKTRKHQPMLLVDIAVPRDVESQ 286
>sp|A1SV88|HEM1_PSYIN Glutamyl-tRNA reductase OS=Psychromonas ingrahamii (strain 37)
GN=hemA PE=3 SV=1
Length = 419
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAP 80
P HL + +TASP P+ GK +K RR P + + P
Sbjct: 235 PNHLAQADIIISSTASPLPIIGKGMVERALKARRNRPMLFIDIAVP 280
>sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 OS=Homo
sapiens GN=TCEB3B PE=1 SV=2
Length = 753
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 15 PETASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSP 71
PE A++ PS SP H RT R P P + REPR K R++P
Sbjct: 113 PENATAPRSPS-------HSPEHRRTARRTPPGQQRPHPRSHSREPRAERKCPRIAP 162
>sp|P15711|104K_THEPA 104 kDa microneme/rhoptry antigen OS=Theileria parva GN=TP04_0437
PE=2 SV=1
Length = 924
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 23 KPSSSGKPG---QFSPVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGA 79
KP S KPG + P + T+ PK +EPR PR SP +
Sbjct: 546 KPGSGKKPGPAREHKPSKIPTLSKKPSGPKDPKHPRDPKEPRKSKSPRTASPTRRP---S 602
Query: 80 PEIPRTQAL 88
P++P+ L
Sbjct: 603 PKLPQLSKL 611
>sp|P17924|NFIB_CHICK Nuclear factor 1 B-type OS=Gallus gallus GN=NFIB PE=1 SV=1
Length = 560
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 14/56 (25%)
Query: 14 SPETASSFLKPSSSGK-----PGQFSPV-----HLRTVRTVTLATASPKPVTGKRE 59
SP+T+ +P+SSG+ PG F+PV H VR VTL KP+T E
Sbjct: 409 SPQTS----QPNSSGQVVGKVPGHFTPVLAPSPHHSAVRPVTLTMTDTKPITTSTE 460
>sp|Q32GZ7|HEM1_SHIDS Glutamyl-tRNA reductase OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B7LSI0|HEM1_ESCF3 Glutamyl-tRNA reductase OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|Q1RCM8|HEM1_ECOUT Glutamyl-tRNA reductase OS=Escherichia coli (strain UTI89 / UPEC)
GN=hemA PE=3 SV=2
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B1LH90|HEM1_ECOSM Glutamyl-tRNA reductase OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|Q8FI03|HEM1_ECOL6 Glutamyl-tRNA reductase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=hemA PE=3 SV=2
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|Q0TIG0|HEM1_ECOL5 Glutamyl-tRNA reductase OS=Escherichia coli O6:K15:H31 (strain 536
/ UPEC) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|A1AAD7|HEM1_ECOK1 Glutamyl-tRNA reductase OS=Escherichia coli O1:K1 / APEC GN=hemA
PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B7MTZ4|HEM1_ECO81 Glutamyl-tRNA reductase OS=Escherichia coli O81 (strain ED1a)
GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B7NUX6|HEM1_ECO7I Glutamyl-tRNA reductase OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B7MKB2|HEM1_ECO45 Glutamyl-tRNA reductase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B7UQ98|HEM1_ECO27 Glutamyl-tRNA reductase OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|A8AG01|HEM1_CITK8 Glutamyl-tRNA reductase OS=Citrobacter koseri (strain ATCC BAA-895
/ CDC 4225-83 / SGSC4696) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B7N421|HEM1_ECOLU Glutamyl-tRNA reductase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|P0A6X1|HEM1_ECOLI Glutamyl-tRNA reductase OS=Escherichia coli (strain K12) GN=hemA
PE=1 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B1XAQ1|HEM1_ECODH Glutamyl-tRNA reductase OS=Escherichia coli (strain K12 / DH10B)
GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|C4ZTQ1|HEM1_ECOBW Glutamyl-tRNA reductase OS=Escherichia coli (strain K12 / MC4100 /
BW2952) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B5YXM8|HEM1_ECO5E Glutamyl-tRNA reductase OS=Escherichia coli O157:H7 (strain EC4115
/ EHEC) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|P0A6X2|HEM1_ECO57 Glutamyl-tRNA reductase OS=Escherichia coli O157:H7 GN=hemA PE=3
SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|Q3Z0S8|HEM1_SHISS Glutamyl-tRNA reductase OS=Shigella sonnei (strain Ss046) GN=hemA
PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|Q83RP1|HEM1_SHIFL Glutamyl-tRNA reductase OS=Shigella flexneri GN=hemA PE=3 SV=2
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|Q0T5I5|HEM1_SHIF8 Glutamyl-tRNA reductase OS=Shigella flexneri serotype 5b (strain
8401) GN=hemA PE=3 SV=2
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|Q31ZQ3|HEM1_SHIBS Glutamyl-tRNA reductase OS=Shigella boydii serotype 4 (strain
Sb227) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B2TZV8|HEM1_SHIB3 Glutamyl-tRNA reductase OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B6I9S5|HEM1_ECOSE Glutamyl-tRNA reductase OS=Escherichia coli (strain SE11) GN=hemA
PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B7LXC5|HEM1_ECO8A Glutamyl-tRNA reductase OS=Escherichia coli O8 (strain IAI1)
GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|B7LGX1|HEM1_ECO55 Glutamyl-tRNA reductase OS=Escherichia coli (strain 55989 / EAEC)
GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|A7ZKY4|HEM1_ECO24 Glutamyl-tRNA reductase OS=Escherichia coli O139:H28 (strain
E24377A / ETEC) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|O23324|APS3_ARATH ATP-sulfurylase 3, chloroplastic OS=Arabidopsis thaliana GN=APS3
PE=1 SV=1
Length = 465
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 1 MAVSSGVFT--TTFLSPETASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKR 58
MA S VF T+F+S S S + S R++RT+++ +P GK
Sbjct: 1 MASMSTVFPKPTSFISQPLTKSHKSDSVTTSISFPSNSKTRSLRTISVRAGLIEPDGGKL 60
Query: 59 EPRGIMKPRRVSPEMEAFVGAPEIPRTQ--ALKLIWAHI 95
+ +PRR + E A ++PR + A+ L W H+
Sbjct: 61 VDLVVPEPRRREKKHE----AADLPRVRLTAIDLQWMHV 95
>sp|B1IU83|HEM1_ECOLC Glutamyl-tRNA reductase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|A7ZZE6|HEM1_ECOHS Glutamyl-tRNA reductase OS=Escherichia coli O9:H4 (strain HS)
GN=hemA PE=3 SV=1
Length = 418
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 38 LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHI 95
LR + +TASP P+ GK +K RR P + + P + KL A++
Sbjct: 240 LREADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYL 297
>sp|P13622|NFIB_MESAU Nuclear factor 1 B-type OS=Mesocricetus auratus GN=NFIB PE=2 SV=1
Length = 561
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 14/56 (25%)
Query: 14 SPETASSFLKPSSSGK-----PGQFSPV-----HLRTVRTVTLATASPKPVTGKRE 59
SP+T+ +P+SSG+ PG F+PV H VR VTL KP+T E
Sbjct: 410 SPQTS----QPNSSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTE 461
>sp|P97863|NFIB_MOUSE Nuclear factor 1 B-type OS=Mus musculus GN=Nfib PE=1 SV=2
Length = 570
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 14/56 (25%)
Query: 14 SPETASSFLKPSSSGK-----PGQFSPV-----HLRTVRTVTLATASPKPVTGKRE 59
SP+T+ +P+SSG+ PG F+PV H VR VTL KP+T E
Sbjct: 410 SPQTS----QPNSSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTE 461
>sp|Q60A20|HEM1_METCA Glutamyl-tRNA reductase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=hemA PE=3 SV=1
Length = 420
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 35 PVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGA-----PEIPRTQALK 89
P HL + +T SP P+ GK ++ RR P + PE+ + Q +
Sbjct: 235 PKHLAKADIIVASTGSPLPILGKGSFESALRSRRHKPMFIVDLAVPRDIEPEVEQLQDVY 294
Query: 90 LIWAHIKQHNLQ 101
L QH ++
Sbjct: 295 LYTVDDLQHTVE 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,979,645
Number of Sequences: 539616
Number of extensions: 1793201
Number of successful extensions: 4606
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4524
Number of HSP's gapped (non-prelim): 96
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)