Query 033520
Match_columns 117
No_of_seqs 149 out of 461
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:37:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 99.8 3.5E-20 1.2E-24 128.5 4.4 54 61-114 6-71 (93)
2 1uhr_A SWI/SNF related, matrix 99.8 9.1E-20 3.1E-24 126.6 2.3 51 64-114 9-71 (93)
3 1v32_A AT5G08430, hypothetical 99.7 4E-18 1.4E-22 120.7 4.6 47 68-114 15-79 (101)
4 1z1m_A Ubiquitin-protein ligas 92.1 0.11 3.6E-06 37.9 3.1 51 64-114 25-93 (119)
5 2z5s_M MDM4 protein, zebrafish 79.5 1.6 5.6E-05 32.5 3.4 49 66-114 23-89 (140)
6 3fea_A MDM4 protein; HDMX, HDM 73.6 2.7 9.3E-05 29.7 3.1 49 66-114 15-81 (100)
7 1ycq_A MDM2, MDM2; anti-oncoge 71.6 4.6 0.00016 28.8 3.9 50 65-114 10-77 (107)
8 3dac_M MDM4 protein; MDMX, MDM 68.8 3.3 0.00011 30.5 2.7 50 65-114 23-90 (130)
9 2axi_A Ubiquitin-protein ligas 63.7 3.8 0.00013 29.6 2.2 49 66-114 11-77 (115)
10 2k5j_A Uncharacterized protein 40.8 18 0.00062 23.3 2.4 43 67-109 14-61 (80)
11 2cpg_A REPA protein, transcrip 39.7 35 0.0012 18.7 3.3 32 68-99 8-44 (45)
12 2qtr_A Nicotinate (nicotinamid 38.4 6 0.0002 27.9 -0.2 32 70-101 156-187 (189)
13 3h05_A Uncharacterized protein 38.4 3.8 0.00013 29.9 -1.3 15 87-101 156-170 (177)
14 1kqn_A Nmnat, nicotinamide mon 36.3 5.9 0.0002 30.9 -0.6 36 70-105 223-258 (279)
15 1nup_A FKSG76; NAD biosynthesi 35.0 7.4 0.00025 29.5 -0.2 35 70-104 202-236 (252)
16 2oq2_A Phosphoadenosine phosph 34.8 14 0.00049 27.9 1.4 15 89-103 193-207 (261)
17 2guj_A Phage-like element PBSX 34.7 30 0.001 25.3 3.1 30 85-114 68-106 (155)
18 3fwk_A FMN adenylyltransferase 34.6 14 0.00049 29.9 1.4 13 90-102 204-216 (308)
19 1k4m_A NAMN adenylyltransferas 34.1 7.5 0.00026 28.3 -0.3 32 70-101 181-212 (213)
20 2goy_A Adenosine phosphosulfat 31.7 20 0.00069 27.3 1.8 14 89-102 202-215 (275)
21 2h29_A Probable nicotinate-nuc 30.9 8 0.00027 27.6 -0.6 32 70-101 156-187 (189)
22 1kam_A Deamido-NAD(+), nicotin 30.5 8.2 0.00028 27.6 -0.6 32 70-101 161-192 (194)
23 2o8v_A Phosphoadenosine phosph 29.1 24 0.00082 26.4 1.8 13 89-101 188-200 (252)
24 1yum_A 'probable nicotinate-nu 28.3 11 0.00038 28.5 -0.2 32 71-102 200-231 (242)
25 2lfh_A DNA-binding protein inh 27.0 77 0.0026 20.6 3.7 38 57-97 23-64 (68)
26 2wsi_A FAD synthetase; transfe 26.9 24 0.00081 27.6 1.4 14 89-102 200-213 (306)
27 2kwl_A ACP, acyl carrier prote 25.1 66 0.0023 19.4 3.1 21 78-98 1-21 (84)
28 1zun_A Sulfate adenylyltransfe 24.9 27 0.00091 27.7 1.4 16 89-104 211-226 (325)
29 2hin_A GP39, repressor protein 23.5 46 0.0016 21.1 2.1 23 70-99 13-35 (71)
30 1z4h_A TORI, TOR inhibition pr 23.0 34 0.0012 20.6 1.4 31 71-109 14-44 (66)
31 1sur_A PAPS reductase; assimil 22.5 33 0.0011 24.6 1.4 14 89-102 187-200 (215)
32 2bj7_A Nickel responsive regul 21.5 48 0.0016 23.1 2.1 38 67-104 8-51 (138)
33 2hza_A Nickel-responsive regul 20.2 41 0.0014 23.3 1.5 38 67-104 6-49 (133)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.79 E-value=3.5e-20 Score=128.48 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=50.2
Q ss_pred CCCCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520 61 RGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI 114 (117)
Q Consensus 61 ~g~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~ 114 (117)
....+.|++|++||+|+|.++++|++|+++||+|||+||||||+| |||+|+|.|
T Consensus 6 ~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~ 71 (93)
T 1v31_A 6 SGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKF 71 (93)
T ss_dssp CSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEET
T ss_pred CCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccH
Confidence 346689999999999999999999999999999999999999995 999999876
No 2
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.76 E-value=9.1e-20 Score=126.57 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520 64 MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI 114 (117)
Q Consensus 64 ~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~ 114 (117)
...|++|++||+|+|.++++|++|+++||+|||+||||||+| |||+|+|.|
T Consensus 9 p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~ 71 (93)
T 1uhr_A 9 PPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKF 71 (93)
T ss_dssp CCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEG
T ss_pred CCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccH
Confidence 457899999999999999999999999999999999999984 999999876
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.71 E-value=4e-18 Score=120.72 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=44.0
Q ss_pred CCCHHHHhhh---CC---CCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520 68 RVSPEMEAFV---GA---PEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI 114 (117)
Q Consensus 68 ~LSpeLa~~l---G~---~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~ 114 (117)
-+|++|++|| |. ++++|++|+++||+|||+||||||+| |||+|+|.|
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~ 79 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFR 79 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEET
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccH
Confidence 7899999999 87 57999999999999999999999994 999999876
No 4
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=92.09 E-value=0.11 Score=37.94 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHhhh---CC--CCcCHHHHHHHHHHHhhhcCCCCccc-------------ccCcceeEE
Q 033520 64 MKPRRVSPEMEAFV---GA--PEIPRTQALKLIWAHIKQHNLQWKTI-------------VFGKWECWI 114 (117)
Q Consensus 64 ~kp~~LSpeLa~~l---G~--~e~sR~evvK~lW~YIK~nnLQDP~N-------------vFG~d~v~~ 114 (117)
...++..++|-.+| |. +.-++-||+..+=+||-.+.|-|+.+ +||++++.+
T Consensus 25 e~~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsv 93 (119)
T 1z1m_A 25 ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSV 93 (119)
T ss_dssp CCCCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEET
T ss_pred cccccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceee
Confidence 33455555555555 53 56789999999999999999999983 888887653
No 5
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=79.50 E-value=1.6 Score=32.45 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=41.6
Q ss_pred CCCCCHHHHhhh---CC--CCcCHHHHHHHHHHHhhhcCCCCcc-------------cccCcceeEE
Q 033520 66 PRRVSPEMEAFV---GA--PEIPRTQALKLIWAHIKQHNLQWKT-------------IVFGKWECWI 114 (117)
Q Consensus 66 p~~LSpeLa~~l---G~--~e~sR~evvK~lW~YIK~nnLQDP~-------------NvFG~d~v~~ 114 (117)
.++..++|-.+| |. +.-++-||+-.+=+||-.+.|-|+. ++||++++.+
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSV 89 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSV 89 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEET
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceee
Confidence 677788888887 53 5689999999999999999999998 3888887654
No 6
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=73.59 E-value=2.7 Score=29.66 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=39.6
Q ss_pred CCCCCHHHHhhh---CC--CCcCHHHHHHHHHHHhhhcCCCCcc-------------cccCcceeEE
Q 033520 66 PRRVSPEMEAFV---GA--PEIPRTQALKLIWAHIKQHNLQWKT-------------IVFGKWECWI 114 (117)
Q Consensus 66 p~~LSpeLa~~l---G~--~e~sR~evvK~lW~YIK~nnLQDP~-------------NvFG~d~v~~ 114 (117)
.++..++|-.+| |. +.-+..||+-.+=+||-.+.|-||. .+||++++.+
T Consensus 15 ~Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsv 81 (100)
T 3fea_A 15 QVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSV 81 (100)
T ss_dssp CBEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEET
T ss_pred ccCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceee
Confidence 355667777776 53 5689999999999999999999998 3889888764
No 7
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=71.59 E-value=4.6 Score=28.79 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=39.6
Q ss_pred CCCCCCHHHHhhh---CC--CCcCHHHHHHHHHHHhhhcCCCCccc-------------ccCcceeEE
Q 033520 65 KPRRVSPEMEAFV---GA--PEIPRTQALKLIWAHIKQHNLQWKTI-------------VFGKWECWI 114 (117)
Q Consensus 65 kp~~LSpeLa~~l---G~--~e~sR~evvK~lW~YIK~nnLQDP~N-------------vFG~d~v~~ 114 (117)
..++..++|-.+| |. ..-++-||+-.+=+||-.+.|-|+.+ +||++++.+
T Consensus 10 ~~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsv 77 (107)
T 1ycq_A 10 KLVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSV 77 (107)
T ss_dssp CCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEET
T ss_pred cccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceee
Confidence 3456667777776 43 56799999999999999999999983 888887653
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=68.80 E-value=3.3 Score=30.47 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=40.7
Q ss_pred CCCCCCHHHHhhh---CC--CCcCHHHHHHHHHHHhhhcCCCCccc-------------ccCcceeEE
Q 033520 65 KPRRVSPEMEAFV---GA--PEIPRTQALKLIWAHIKQHNLQWKTI-------------VFGKWECWI 114 (117)
Q Consensus 65 kp~~LSpeLa~~l---G~--~e~sR~evvK~lW~YIK~nnLQDP~N-------------vFG~d~v~~ 114 (117)
..++..++|-.+| |. +.-+..||+-.+=+||-.+.|-||.+ +||++++.+
T Consensus 23 ~~Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSV 90 (130)
T 3dac_M 23 TQVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSV 90 (130)
T ss_dssp CEEEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEET
T ss_pred eecCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceee
Confidence 3566677777776 53 56899999999999999999999983 899988764
No 9
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=63.74 E-value=3.8 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=38.9
Q ss_pred CCCCCHHHHhhh---CC--CCcCHHHHHHHHHHHhhhcCCCCcc-------------cccCcceeEE
Q 033520 66 PRRVSPEMEAFV---GA--PEIPRTQALKLIWAHIKQHNLQWKT-------------IVFGKWECWI 114 (117)
Q Consensus 66 p~~LSpeLa~~l---G~--~e~sR~evvK~lW~YIK~nnLQDP~-------------NvFG~d~v~~ 114 (117)
.++..++|-.+| |. ..-++-||+-.+=+||-.+.|-|+. ++||++++.+
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsv 77 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSV 77 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEET
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceee
Confidence 455666777776 43 5678999999999999999999998 3888887654
No 10
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=40.79 E-value=18 Score=23.27 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=29.8
Q ss_pred CCCCHHHHhhhC----CCCcCHHHHHH-HHHHHhhhcCCCCcccccCc
Q 033520 67 RRVSPEMEAFVG----APEIPRTQALK-LIWAHIKQHNLQWKTIVFGK 109 (117)
Q Consensus 67 ~~LSpeLa~~lG----~~e~sR~evvK-~lW~YIK~nnLQDP~NvFG~ 109 (117)
+.|+++|.+-|. ..-.+|++++. .|=+||..+.-..-.++||.
T Consensus 14 I~Lpdel~~~Ld~la~~~g~srselireAi~~yl~~~~~~~~~~~~G~ 61 (80)
T 2k5j_A 14 LDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGI 61 (80)
T ss_dssp EEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSSCCSSSCCCC
T ss_pred EECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 456666665554 34589999998 77889988763333478874
No 11
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=39.70 E-value=35 Score=18.66 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=19.9
Q ss_pred CCCHHHHhhhC----CCCcCHHHHHH-HHHHHhhhcC
Q 033520 68 RVSPEMEAFVG----APEIPRTQALK-LIWAHIKQHN 99 (117)
Q Consensus 68 ~LSpeLa~~lG----~~e~sR~evvK-~lW~YIK~nn 99 (117)
.|+++|.+-|. ....+|++++. .|-+|+..++
T Consensus 8 ~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~~~ 44 (45)
T 2cpg_A 8 TLSESVLENLEKMAREMGLSKSAMISVALENYKKGQE 44 (45)
T ss_dssp EEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHCC-
T ss_pred ecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHcc
Confidence 34455444443 23469999997 6788887653
No 12
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=38.43 E-value=6 Score=27.86 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=20.2
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCC
Q 033520 70 SPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101 (117)
Q Consensus 70 SpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQ 101 (117)
|....+.+.....-+.-|=..+++||++|+|-
T Consensus 156 ST~IR~~l~~g~~~~~lvP~~V~~yI~~~~lY 187 (189)
T 2qtr_A 156 SSLLRERYKEKKTCKYLLPEKVQVYIERNGLY 187 (189)
T ss_dssp HHHHHHHHHTTCCCTTTSCHHHHHHHHHTTGG
T ss_pred HHHHHHHHHcCCCchhcCCHHHHHHHHHcCCc
Confidence 45566666322223334556899999999974
No 13
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=38.36 E-value=3.8 Score=29.90 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhcCCC
Q 033520 87 ALKLIWAHIKQHNLQ 101 (117)
Q Consensus 87 vvK~lW~YIK~nnLQ 101 (117)
+-..+++||++|+|-
T Consensus 156 vp~~V~~yI~~~~LY 170 (177)
T 3h05_A 156 TTPTVSELLLNEGLY 170 (177)
T ss_dssp SCHHHHHHHHC----
T ss_pred CCHHHHHHHHHcCCC
Confidence 445689999999984
No 14
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=36.31 E-value=5.9 Score=30.89 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=21.7
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc
Q 033520 70 SPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI 105 (117)
Q Consensus 70 SpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N 105 (117)
|.++++.+...+--|.-+=..+++||++|+|-..+.
T Consensus 223 ST~IR~~l~~g~si~~lvP~~V~~YI~~~~LY~~~~ 258 (279)
T 1kqn_A 223 STKIRRALRRGQSIRYLVPDLVQEYIEKHNLYSSES 258 (279)
T ss_dssp HHHHHHHHHTTCCCBTTBCHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHcCCChhhcCCHHHHHHHHHcCCcCCCc
Confidence 345555553222223334568999999999976553
No 15
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=35.04 E-value=7.4 Score=29.51 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=20.5
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCcc
Q 033520 70 SPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKT 104 (117)
Q Consensus 70 SpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~ 104 (117)
|.++.+.+.....-|.-|=..+++||++|+|-...
T Consensus 202 ST~IR~~~~~g~~i~~lvP~~V~~yI~~~~LY~~~ 236 (252)
T 1nup_A 202 ATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKG 236 (252)
T ss_dssp HHHHHHHHHTTCCCBTTBCHHHHHHHHHTTCSCC-
T ss_pred HHHHHHHHHcCCCchhcCCHHHHHHHHHcCCcCCC
Confidence 34555555322222333456899999999996543
No 16
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=34.84 E-value=14 Score=27.88 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=12.2
Q ss_pred HHHHHHhhhcCCCCc
Q 033520 89 KLIWAHIKQHNLQWK 103 (117)
Q Consensus 89 K~lW~YIK~nnLQDP 103 (117)
..||+||++|+|.-.
T Consensus 193 ~dV~~Yi~~~~lp~~ 207 (261)
T 2oq2_A 193 EQVKQYIDANNVPYN 207 (261)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 478999999998643
No 17
>2guj_A Phage-like element PBSX protein XKDM; X-RAY, SR353, structural genomics, PSI, protein structure initiative; 3.00A {Bacillus subtilis} SCOP: b.106.1.3
Probab=34.73 E-value=30 Score=25.34 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhc---------CCCCcccccCcceeEE
Q 033520 85 TQALKLIWAHIKQH---------NLQWKTIVFGKWECWI 114 (117)
Q Consensus 85 ~evvK~lW~YIK~n---------nLQDP~NvFG~d~v~~ 114 (117)
+...+.+.+|||.- .|.||+...|+++|.+
T Consensus 68 S~~~~~l~~~ik~G~~~~f~i~~~l~DP~s~~G~ErV~l 106 (155)
T 2guj_A 68 SKFVLLMMDYVKKGSDPYFTLQAVLDDQSSGRGTERVTL 106 (155)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEECCTTCSSSCCEEEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEeCCCCCCCceEEEEE
Confidence 34456788999986 4678887679988865
No 18
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=34.59 E-value=14 Score=29.89 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=11.3
Q ss_pred HHHHHhhhcCCCC
Q 033520 90 LIWAHIKQHNLQW 102 (117)
Q Consensus 90 ~lW~YIK~nnLQD 102 (117)
.||+||++|+|--
T Consensus 204 DVW~YI~~~~LPy 216 (308)
T 3fwk_A 204 NIWSFLLYSNEPI 216 (308)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCCC
Confidence 7999999999853
No 19
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=34.10 E-value=7.5 Score=28.30 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=19.7
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCC
Q 033520 70 SPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101 (117)
Q Consensus 70 SpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQ 101 (117)
|.+..+.+.....-|.-|=..+++||++|+|-
T Consensus 181 ST~IR~~i~~g~~i~~lvP~~V~~yI~~~~LY 212 (213)
T 1k4m_A 181 ATIIRERLQNGESCEDLLPEPVLTYINQQGLY 212 (213)
T ss_dssp HHHHHHHHHTTCCCTTTSCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCchhcCCHHHHHHHHHcCCC
Confidence 34555555322223444567899999999983
No 20
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=31.70 E-value=20 Score=27.26 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.8
Q ss_pred HHHHHHhhhcCCCC
Q 033520 89 KLIWAHIKQHNLQW 102 (117)
Q Consensus 89 K~lW~YIK~nnLQD 102 (117)
+.||+||++|+|.-
T Consensus 202 ~dV~~Yi~~~~lp~ 215 (275)
T 2goy_A 202 EEVWGYIRMLELPY 215 (275)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 37899999999853
No 21
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=30.89 E-value=8 Score=27.56 Aligned_cols=32 Identities=19% Similarity=0.036 Sum_probs=19.7
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCC
Q 033520 70 SPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101 (117)
Q Consensus 70 SpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQ 101 (117)
|.++.+.+.....-+.-|=..+++||++|+|-
T Consensus 156 ST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY 187 (189)
T 2h29_A 156 STMIRQRVSEGKSIQVLVPKSVENYIKGEGLY 187 (189)
T ss_dssp HHHHHHHHHTTCCCBTTBCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCChhhcCCHHHHHHHHHhCCc
Confidence 44555555322223334556899999999984
No 22
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=30.54 E-value=8.2 Score=27.62 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=19.5
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCC
Q 033520 70 SPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101 (117)
Q Consensus 70 SpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQ 101 (117)
|.++.+.+.....-+.-|=..+++||++|+|-
T Consensus 161 ST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY 192 (194)
T 1kam_A 161 STMIRERFKSKKPTDYLIPDKVKKYVEENGLY 192 (194)
T ss_dssp HHHHHHHHHHTCCCTTTSCHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCchhhCCHHHHHHHHHcCCc
Confidence 45555555221222333556899999999984
No 23
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=29.06 E-value=24 Score=26.42 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=11.2
Q ss_pred HHHHHHhhhcCCC
Q 033520 89 KLIWAHIKQHNLQ 101 (117)
Q Consensus 89 K~lW~YIK~nnLQ 101 (117)
+.||+||++|+|.
T Consensus 188 ~dV~~y~~~~~lp 200 (252)
T 2o8v_A 188 RTIYQYLQKHGLK 200 (252)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 3689999999984
No 24
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=28.27 E-value=11 Score=28.53 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=19.4
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCC
Q 033520 71 PEMEAFVGAPEIPRTQALKLIWAHIKQHNLQW 102 (117)
Q Consensus 71 peLa~~lG~~e~sR~evvK~lW~YIK~nnLQD 102 (117)
.+..+.+.....-+.-|=..+++||++|+|-.
T Consensus 200 T~IR~~i~~g~~i~~lVP~~V~~yI~~~~LY~ 231 (242)
T 1yum_A 200 TQIRALLGAGRSVRFLVPDAVLNYIEAHHLYR 231 (242)
T ss_dssp HHHHHHHHTTCCCBTTBCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHcCCChhHcCCHHHHHHHHHhCCcC
Confidence 44555552222233445568999999999853
No 25
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.98 E-value=77 Score=20.59 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCCCHHHHhhhC----CCCcCHHHHHHHHHHHhhh
Q 033520 57 KREPRGIMKPRRVSPEMEAFVG----APEIPRTQALKLIWAHIKQ 97 (117)
Q Consensus 57 ~k~~~g~~kp~~LSpeLa~~lG----~~e~sR~evvK~lW~YIK~ 97 (117)
+++-..++..| ++|.+.|= ...+|+.|+++..++||..
T Consensus 23 R~Rm~~lN~aF---~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~ 64 (68)
T 2lfh_A 23 LSLLDDMNHCY---SRLRELVPGVPRGTQLSQVEILQRVIDYILD 64 (68)
T ss_dssp SCSSSHHHHHH---HHHHHHCCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 34444444444 66777762 4689999999999999975
No 26
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=26.95 E-value=24 Score=27.62 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.8
Q ss_pred HHHHHHhhhcCCCC
Q 033520 89 KLIWAHIKQHNLQW 102 (117)
Q Consensus 89 K~lW~YIK~nnLQD 102 (117)
..||+||+.|+|--
T Consensus 200 ~DVw~Yi~~~~lpy 213 (306)
T 2wsi_A 200 TNIWSFLLYSNEPI 213 (306)
T ss_dssp HHHHHHHHHHCCCB
T ss_pred HHHHHHHHHcCCCC
Confidence 37899999999864
No 27
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=25.15 E-value=66 Score=19.35 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=18.0
Q ss_pred CCCCcCHHHHHHHHHHHhhhc
Q 033520 78 GAPEIPRTQALKLIWAHIKQH 98 (117)
Q Consensus 78 G~~e~sR~evvK~lW~YIK~n 98 (117)
|...|+|.++..+|.+.|.+.
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~ 21 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQ 21 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 567899999999999998875
No 28
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=24.92 E-value=27 Score=27.67 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=12.7
Q ss_pred HHHHHHhhhcCCCCcc
Q 033520 89 KLIWAHIKQHNLQWKT 104 (117)
Q Consensus 89 K~lW~YIK~nnLQDP~ 104 (117)
..||+||++++|.-..
T Consensus 211 ~dIw~Yi~~~~lp~~~ 226 (325)
T 1zun_A 211 LDIWQYIYLEGIPIVP 226 (325)
T ss_dssp HHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhCCCcch
Confidence 3789999999986544
No 29
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=23.47 E-value=46 Score=21.14 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=18.3
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHhhhcC
Q 033520 70 SPEMEAFVGAPEIPRTQALKLIWAHIKQHN 99 (117)
Q Consensus 70 SpeLa~~lG~~e~sR~evvK~lW~YIK~nn 99 (117)
-.+||+.||++.. .||.+|+.+.
T Consensus 13 ~~~lA~~lGVs~~-------aVs~W~~g~~ 35 (71)
T 2hin_A 13 VEKAAVGVGVTPG-------AVYQWLQAGE 35 (71)
T ss_dssp HHHHHHHHTSCHH-------HHHHHHHHTS
T ss_pred HHHHHHHHCCCHH-------HHHHHHhCCC
Confidence 3689999998877 7888887644
No 30
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=23.02 E-value=34 Score=20.56 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=23.9
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCcccccCc
Q 033520 71 PEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTIVFGK 109 (117)
Q Consensus 71 peLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~NvFG~ 109 (117)
+|+++++|.+.. .||.+|++..+--|-.| |.
T Consensus 14 ~eva~~lgvsrs-------tiy~~~~~g~fP~pikl-G~ 44 (66)
T 1z4h_A 14 KFIMADTGFGKT-------FIYDRIKSGDLPKAKVI-HG 44 (66)
T ss_dssp HHHHHHHSSCHH-------HHHHHHHHHHCCCSEES-SS
T ss_pred HHHHHHHCcCHH-------HHHHHHHCCCCCCCEEe-CC
Confidence 688999997655 78999999887666554 54
No 31
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=22.55 E-value=33 Score=24.57 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=11.5
Q ss_pred HHHHHHhhhcCCCC
Q 033520 89 KLIWAHIKQHNLQW 102 (117)
Q Consensus 89 K~lW~YIK~nnLQD 102 (117)
+.||+|+++++|.-
T Consensus 187 ~dI~~y~~~~~lp~ 200 (215)
T 1sur_A 187 RTIYQYLQKHGLKY 200 (215)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 36899999999843
No 32
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=21.48 E-value=48 Score=23.12 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=27.7
Q ss_pred CCCCHHHHhhhCC-----CCcCHHHHHH-HHHHHhhhcCCCCcc
Q 033520 67 RRVSPEMEAFVGA-----PEIPRTQALK-LIWAHIKQHNLQWKT 104 (117)
Q Consensus 67 ~~LSpeLa~~lG~-----~e~sR~evvK-~lW~YIK~nnLQDP~ 104 (117)
+.|+++|.+.+.. ...+|+|++. .+-+|+.++..+..+
T Consensus 8 VsLp~~l~~~ld~~v~~~~y~sRSe~Ir~air~~l~~~~~~~~~ 51 (138)
T 2bj7_A 8 ISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDFIIRHEWEVGN 51 (138)
T ss_dssp EEEEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTSCCCS
T ss_pred EEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhccc
Confidence 3566777776652 3489999998 577899998876544
No 33
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=20.17 E-value=41 Score=23.31 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=27.1
Q ss_pred CCCCHHHHhhhC----C-CCcCHHHHHH-HHHHHhhhcCCCCcc
Q 033520 67 RRVSPEMEAFVG----A-PEIPRTQALK-LIWAHIKQHNLQWKT 104 (117)
Q Consensus 67 ~~LSpeLa~~lG----~-~e~sR~evvK-~lW~YIK~nnLQDP~ 104 (117)
+.|+++|.+.+. . ...+|++++. .+-+|+.++..++++
T Consensus 6 VsLp~~ll~~lD~~v~~~~y~sRSe~Ir~air~~l~~~~~~~~~ 49 (133)
T 2hza_A 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHG 49 (133)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred EEECHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhccC
Confidence 356677777765 2 3489999998 577899987766543
Done!