Query 033522
Match_columns 117
No_of_seqs 101 out of 724
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 2.2E-35 7.4E-40 208.3 13.7 111 5-117 15-126 (126)
2 2gow_A HCG-1 protein, ubiquiti 100.0 5.9E-32 2E-36 190.3 12.4 109 3-117 14-125 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 100.0 2.3E-27 8E-32 165.0 13.5 97 4-105 14-111 (116)
4 3phx_B Ubiquitin-like protein 99.8 2.2E-20 7.5E-25 119.2 9.9 77 5-95 3-79 (79)
5 4dwf_A HLA-B-associated transc 99.8 2.8E-20 9.5E-25 121.5 9.6 83 3-100 2-84 (90)
6 4fbj_B NEDD8; effector-HOST ta 99.8 3.2E-20 1.1E-24 121.7 8.9 82 7-102 1-82 (88)
7 3plu_A Ubiquitin-like modifier 99.8 3.4E-20 1.2E-24 124.5 8.8 74 3-90 18-91 (93)
8 3dbh_I NEDD8; cell cycle, acti 99.8 6.6E-20 2.2E-24 118.6 9.3 80 3-96 9-88 (88)
9 2lxa_A Ubiquitin-like protein 99.8 4.1E-20 1.4E-24 122.3 7.5 76 7-96 2-81 (87)
10 2kan_A Uncharacterized protein 99.8 1.3E-19 4.5E-24 120.6 9.5 82 2-98 11-93 (94)
11 3n3k_B Ubiquitin; hydrolase, p 99.8 8.6E-20 2.9E-24 117.2 8.3 82 5-100 2-83 (85)
12 4eew_A Large proline-rich prot 99.8 1.1E-19 3.8E-24 118.2 8.9 75 3-92 14-88 (88)
13 1wgd_A Homocysteine-responsive 99.8 1.1E-19 3.7E-24 119.9 8.9 84 4-99 5-92 (93)
14 1wy8_A NP95-like ring finger p 99.8 2.6E-19 9.1E-24 116.5 10.6 82 3-98 4-87 (89)
15 3mtn_B UBA80, ubcep1, ubiquiti 99.8 2.1E-19 7.1E-24 115.2 9.5 80 5-98 2-81 (85)
16 2uyz_B Small ubiquitin-related 99.8 9E-20 3.1E-24 116.3 7.5 78 5-96 2-79 (79)
17 2faz_A Ubiquitin-like containi 99.8 3E-19 1E-23 113.5 9.8 76 6-94 2-78 (78)
18 4hcn_B Polyubiquitin, ubiquiti 99.8 1.5E-19 5.2E-24 120.5 8.7 80 3-96 19-98 (98)
19 3v6c_B Ubiquitin; structural g 99.8 2.7E-19 9.3E-24 117.5 9.7 77 3-93 14-90 (91)
20 1uh6_A Ubiquitin-like 5; beta- 99.8 9.3E-20 3.2E-24 123.7 7.6 74 4-91 26-99 (100)
21 2kdb_A Homocysteine-responsive 99.8 1.1E-19 3.8E-24 122.7 7.7 75 4-90 21-99 (99)
22 1ndd_A NEDD8, protein (ubiquit 99.8 3.5E-19 1.2E-23 111.6 9.1 76 7-96 1-76 (76)
23 4a20_A Ubiquitin-like protein 99.8 5.4E-19 1.8E-23 119.2 10.5 79 4-94 17-97 (98)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 4.5E-19 1.5E-23 114.8 9.8 81 3-97 4-84 (87)
25 2wyq_A HHR23A, UV excision rep 99.8 5.2E-19 1.8E-23 113.8 10.0 81 5-96 4-84 (85)
26 2kk8_A Uncharacterized protein 99.8 2.3E-19 7.8E-24 117.2 8.2 75 5-93 9-84 (84)
27 1wyw_B Ubiquitin-like protein 99.8 2.4E-19 8.1E-24 119.7 8.3 78 5-96 20-97 (97)
28 2hj8_A Interferon-induced 17 k 99.8 2E-19 7E-24 117.7 7.7 79 6-98 4-82 (88)
29 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 4.7E-19 1.6E-23 116.7 9.4 79 7-99 2-80 (96)
30 1uel_A HHR23B, UV excision rep 99.8 1.3E-18 4.5E-23 115.4 10.8 82 7-99 1-82 (95)
31 3a9j_A Ubiquitin; protein comp 99.8 9.5E-19 3.3E-23 109.6 9.5 76 7-96 1-76 (76)
32 1wju_A NEDD8 ultimate buster-1 99.8 5.5E-19 1.9E-23 119.9 8.6 78 8-100 17-98 (100)
33 3m62_B UV excision repair prot 99.8 5.4E-19 1.8E-23 119.8 8.3 77 7-97 2-78 (106)
34 2dzi_A Ubiquitin-like protein 99.8 1E-18 3.5E-23 111.2 9.0 78 3-94 4-81 (81)
35 1sif_A Ubiquitin; hydrophobic 99.8 8.6E-19 2.9E-23 114.8 8.6 78 6-97 9-86 (88)
36 3vdz_A Ubiquitin-40S ribosomal 99.8 1.7E-18 5.9E-23 118.2 9.6 78 5-96 34-111 (111)
37 1wia_A Hypothetical ubiquitin- 99.8 4.1E-18 1.4E-22 112.6 10.5 81 3-100 4-85 (95)
38 1v2y_A 3300001G02RIK protein; 99.8 4E-19 1.4E-23 121.4 5.7 82 3-96 4-99 (105)
39 2daf_A FLJ35834 protein; hypot 99.8 1.6E-18 5.6E-23 120.6 8.8 81 3-97 12-93 (118)
40 1ttn_A DC-UBP, dendritic cell- 99.8 2.3E-18 7.8E-23 116.5 9.4 79 4-96 21-99 (106)
41 2bwf_A Ubiquitin-like protein 99.8 3.5E-18 1.2E-22 107.8 9.4 74 5-93 3-76 (77)
42 3rt3_B Ubiquitin-like protein 99.8 2.9E-18 1E-22 122.1 9.8 79 5-97 80-158 (159)
43 2l7r_A Ubiquitin-like protein 99.8 1.9E-18 6.5E-23 114.4 7.8 76 5-96 18-93 (93)
44 3l0w_B Monoubiquitinated proli 99.8 3.7E-18 1.3E-22 124.5 9.9 80 7-100 1-80 (169)
45 1yx5_B Ubiquitin; proteasome, 99.8 5.3E-18 1.8E-22 112.6 9.8 80 7-100 1-80 (98)
46 1wx8_A Riken cDNA 4931431F19; 99.8 1.8E-18 6E-23 114.4 7.1 78 5-97 16-93 (96)
47 1we6_A Splicing factor, putati 99.7 5.4E-18 1.8E-22 115.4 9.1 80 5-98 26-109 (111)
48 1yqb_A Ubiquilin 3; structural 99.7 5.2E-18 1.8E-22 114.0 8.8 80 4-98 20-99 (100)
49 1j8c_A Ubiquitin-like protein 99.7 6.8E-18 2.3E-22 117.9 9.6 79 5-98 31-109 (125)
50 2klc_A Ubiquilin-1; ubiquitin- 99.7 1E-17 3.4E-22 112.7 9.8 79 3-96 22-100 (101)
51 2kdi_A Ubiquitin, vacuolar pro 99.7 1E-17 3.6E-22 115.0 9.9 81 5-99 8-88 (114)
52 4ajy_B Transcription elongatio 99.7 5.2E-18 1.8E-22 118.2 8.4 79 6-93 2-81 (118)
53 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.1E-17 3.8E-22 112.9 9.8 82 4-100 15-96 (106)
54 2ojr_A Ubiquitin; lanthide-bin 99.7 1.4E-17 4.9E-22 113.4 10.1 78 5-96 34-111 (111)
55 2fnj_B Transcription elongatio 99.7 3.5E-18 1.2E-22 119.0 6.9 80 6-96 2-83 (118)
56 3b1l_X E3 ubiquitin-protein li 99.6 1.8E-19 6.3E-24 113.8 0.0 75 7-95 1-75 (76)
57 1we7_A SF3A1 protein; structur 99.7 1.4E-17 4.8E-22 114.0 9.2 81 5-99 24-114 (115)
58 3m63_B Ubiquitin domain-contai 99.7 3.4E-18 1.2E-22 115.2 5.7 76 3-93 25-100 (101)
59 3q3f_A Ribonuclease/ubiquitin 99.7 1.7E-17 5.9E-22 123.5 9.1 81 6-100 105-185 (189)
60 1v5o_A 1700011N24RIK protein; 99.7 3.1E-17 1.1E-21 110.2 9.0 82 5-100 6-92 (102)
61 1x1m_A Ubiquitin-like protein 99.7 3.3E-17 1.1E-21 111.1 9.1 81 5-97 11-104 (107)
62 3u30_A Ubiquitin, linear DI-ub 99.7 5.2E-17 1.8E-21 117.3 9.8 81 3-97 17-97 (172)
63 4dbg_A Ranbp-type and C3HC4-ty 99.7 6.9E-17 2.4E-21 110.4 9.2 76 6-95 24-102 (105)
64 3u5c_f 40S ribosomal protein S 99.7 1.6E-18 5.4E-23 125.1 0.9 79 7-99 1-79 (152)
65 3u5e_m 60S ribosomal protein L 99.7 1.7E-18 5.8E-23 120.8 0.1 78 7-98 1-78 (128)
66 3b08_A Polyubiquitin-C, ubiqui 99.7 2.1E-16 7.2E-21 110.5 10.1 78 5-96 75-152 (152)
67 1wgg_A Ubiquitin carboxyl-term 99.7 8.4E-17 2.9E-21 107.4 7.6 77 3-94 4-80 (96)
68 3u30_A Ubiquitin, linear DI-ub 99.7 1E-16 3.6E-21 115.7 8.6 78 5-96 95-172 (172)
69 1wxv_A BAG-family molecular ch 99.7 2.7E-16 9.2E-21 103.2 9.1 78 4-96 5-88 (92)
70 3rt3_B Ubiquitin-like protein 99.7 2.4E-16 8.1E-21 112.1 9.4 74 6-93 2-77 (159)
71 1v5t_A 8430435I17RIK protein; 99.7 2.2E-16 7.5E-21 103.9 7.5 77 3-94 4-84 (90)
72 2kd0_A LRR repeats and ubiquit 99.7 3.3E-16 1.1E-20 102.1 8.0 70 10-93 15-84 (85)
73 3b08_A Polyubiquitin-C, ubiqui 99.7 6.2E-16 2.1E-20 108.1 9.5 76 7-96 1-76 (152)
74 1oqy_A HHR23A, UV excision rep 99.6 3.7E-16 1.3E-20 126.2 8.4 85 3-97 4-88 (368)
75 1v86_A DNA segment, CHR 7, way 99.6 3.1E-16 1.1E-20 104.3 6.2 75 4-94 15-89 (95)
76 2dzj_A Synaptic glycoprotein S 99.6 1.4E-15 4.9E-20 100.2 7.5 72 6-89 10-85 (88)
77 4b6w_A Tubulin-specific chaper 99.6 2.6E-15 8.9E-20 98.7 8.6 75 7-94 3-85 (86)
78 2kjr_A CG11242; UBL, ubiquitin 99.6 3.3E-15 1.1E-19 99.9 8.8 74 3-90 12-93 (95)
79 2xzm_9 RPS31E; ribosome, trans 99.6 6.2E-17 2.1E-21 120.6 0.2 73 7-98 1-73 (189)
80 2kj6_A Tubulin folding cofacto 99.6 3.4E-15 1.2E-19 100.4 8.1 75 3-91 11-94 (97)
81 3ai5_A Yeast enhanced green fl 99.6 4.5E-15 1.5E-19 117.5 9.1 75 5-93 232-306 (307)
82 2dzm_A FAS-associated factor 1 99.6 3.4E-15 1.1E-19 101.0 6.5 76 7-97 9-86 (100)
83 2io1_B Small ubiquitin-related 99.6 1.5E-14 5.1E-19 96.6 8.1 80 4-97 5-84 (94)
84 1wf9_A NPL4 family protein; be 99.5 1.6E-14 5.5E-19 97.9 7.0 77 3-94 4-96 (107)
85 2io0_B Small ubiquitin-related 99.5 9.1E-14 3.1E-18 92.3 9.5 83 1-98 1-83 (91)
86 1v6e_A Cytoskeleton-associated 99.5 1E-13 3.4E-18 91.9 9.5 74 5-92 6-87 (95)
87 2d07_B Ubiquitin-like protein 99.5 3.9E-13 1.3E-17 89.3 8.7 79 4-96 15-93 (93)
88 1t0y_A Tubulin folding cofacto 99.5 4.7E-13 1.6E-17 92.6 9.5 76 5-94 5-88 (122)
89 1wz0_A Ubiquitin-like protein 99.4 4.4E-13 1.5E-17 91.1 8.6 80 4-97 22-101 (104)
90 3shq_A UBLCP1; phosphatase, hy 99.4 1.4E-13 4.9E-18 109.1 6.6 78 3-95 2-82 (320)
91 1wm3_A Ubiquitin-like protein 99.4 6.7E-13 2.3E-17 84.0 8.0 71 7-91 2-72 (72)
92 3a4r_A Nfatc2-interacting prot 99.4 1.6E-12 5.3E-17 83.9 8.8 75 2-90 3-78 (79)
93 2kzr_A Ubiquitin thioesterase 99.4 3.9E-13 1.4E-17 87.4 5.6 72 7-93 1-78 (86)
94 2eke_C Ubiquitin-like protein 99.4 1.7E-12 5.8E-17 88.6 8.5 78 4-96 29-106 (106)
95 2k8h_A Small ubiquitin protein 99.4 9.3E-13 3.2E-17 90.4 7.2 78 5-96 25-102 (110)
96 1wjn_A Tubulin-folding protein 99.1 1.3E-09 4.3E-14 72.1 10.6 75 5-93 8-93 (97)
97 3kyd_D Small ubiquitin-related 99.1 8.5E-10 2.9E-14 76.3 9.1 77 4-94 38-114 (115)
98 3pge_A SUMO-modified prolifera 99.0 1E-09 3.4E-14 82.3 9.3 82 4-100 27-108 (200)
99 3tix_A Ubiquitin-like protein 98.9 6.5E-09 2.2E-13 77.9 7.6 80 4-98 55-134 (207)
100 3v7o_A Minor nucleoprotein VP3 98.6 7E-09 2.4E-13 78.6 0.2 79 4-97 19-97 (227)
101 3goe_A DNA repair protein RAD6 98.4 3.4E-06 1.2E-10 54.7 8.9 74 5-91 8-81 (82)
102 3uf8_A Ubiquitin-like protein 98.4 1.5E-06 5.2E-11 64.7 8.2 80 3-97 18-97 (209)
103 4efo_A Serine/threonine-protei 98.3 1.2E-06 4E-11 58.5 6.4 55 14-76 21-75 (94)
104 2pjh_A Protein NPL4, nuclear p 98.3 3.6E-07 1.2E-11 58.8 3.1 70 6-90 4-78 (80)
105 3ix6_A TS, tsase, thymidylate 98.3 8E-08 2.7E-12 77.4 -0.4 82 3-99 18-99 (360)
106 2jxx_A Nfatc2-interacting prot 98.2 7.5E-06 2.6E-10 54.7 8.6 69 3-79 22-91 (97)
107 4da1_A Protein phosphatase 1K, 97.9 1.3E-06 4.3E-11 69.9 0.0 79 4-97 28-106 (389)
108 2l76_A Nfatc2-interacting prot 97.8 0.00015 5.2E-09 48.3 8.2 72 5-91 20-91 (95)
109 3qx1_A FAS-associated factor 1 97.8 0.00017 5.8E-09 46.1 8.2 73 3-90 4-81 (84)
110 1wj4_A KIAA0794 protein; UBX d 97.3 0.0017 5.8E-08 44.7 8.6 67 4-79 41-112 (124)
111 2bps_A YUKD protein; ubiquitin 97.3 0.0012 4.1E-08 42.7 7.0 72 5-79 3-76 (81)
112 3ivf_A Talin-1; FERM domain, c 97.2 0.0032 1.1E-07 49.6 10.6 69 6-79 3-77 (371)
113 2dzk_A UBX domain-containing p 97.2 0.0018 6.3E-08 43.4 7.9 76 4-93 11-91 (109)
114 1s3s_G P47 protein; AAA ATPase 97.0 0.0032 1.1E-07 43.4 7.8 68 4-78 50-120 (127)
115 2kc2_A Talin-1, F1; FERM, adhe 96.9 0.0012 4.1E-08 46.1 5.0 66 8-79 13-115 (128)
116 2cr5_A Reproduction 8; UBX dom 96.9 0.0083 2.8E-07 40.1 8.6 73 4-91 21-97 (109)
117 4e71_A Plexin-B2, MM1; transme 96.5 0.013 4.3E-07 40.0 7.4 78 5-92 10-110 (111)
118 3h6n_A Plexin-D1; structural g 96.1 0.057 1.9E-06 37.5 9.2 67 21-94 20-106 (127)
119 2al3_A TUG long isoform; TUG U 96.1 0.033 1.1E-06 36.6 7.3 78 5-96 8-85 (90)
120 2r2o_A Plexin-B1; effector dom 95.6 0.11 3.6E-06 36.6 8.9 82 5-94 23-130 (138)
121 4e74_A Plexin-A4; RBD, structu 95.3 0.11 3.8E-06 35.5 8.0 78 6-93 13-115 (117)
122 3kuz_A Plexin-C1; structural g 94.3 0.47 1.6E-05 32.8 9.2 61 21-90 42-124 (126)
123 1vjk_A Molybdopterin convertin 94.1 0.65 2.2E-05 29.8 9.1 70 5-79 8-87 (98)
124 1wgk_A Riken cDNA 2900073H19 p 92.9 1 3.5E-05 30.1 8.8 81 5-97 10-109 (114)
125 2l32_A Small archaeal modifier 92.3 0.57 2E-05 29.0 6.4 50 7-68 1-50 (74)
126 3hm6_X Plexin-B1; structural g 91.6 1.2 4.1E-05 38.2 9.5 82 5-94 256-363 (644)
127 2inc_C TOUB protein; DIIRON, 4 91.0 2.1 7.1E-05 27.5 8.1 56 22-79 17-75 (83)
128 3ge3_C Toluene-4-monooxygenase 90.7 1.2 4.1E-05 28.7 6.7 56 22-79 19-76 (84)
129 3ig3_A Plxna3 protein; plexin 90.2 2.1 7.3E-05 36.6 9.7 82 5-94 232-336 (627)
130 1ryj_A Unknown; beta/alpha pro 89.4 2.3 7.9E-05 25.6 9.1 55 7-79 5-59 (70)
131 3po0_A Small archaeal modifier 89.2 2.7 9.1E-05 26.1 8.7 67 15-92 15-85 (89)
132 2v1y_A Phosphatidylinositol-4, 88.4 0.83 2.8E-05 30.7 4.9 35 5-40 18-52 (108)
133 4a3p_A Ubiquitin carboxyl-term 88.1 4.1 0.00014 29.7 9.0 53 21-79 143-201 (217)
134 3jyu_A Ubiquitin carboxyl-term 85.8 8.7 0.0003 28.3 9.8 53 21-79 155-213 (231)
135 2qjl_A URM1, ubiquitin-related 84.5 5.8 0.0002 25.2 8.9 29 16-44 18-48 (99)
136 2q5w_D Molybdopterin convertin 84.2 3.3 0.00011 24.8 5.7 46 21-79 19-66 (77)
137 1ef1_A Moesin; membrane, FERM 82.4 11 0.00038 27.9 9.2 78 6-95 1-83 (294)
138 3rpf_C Molybdopterin convertin 81.3 6.7 0.00023 23.5 8.8 70 8-93 2-71 (74)
139 1h4r_A Merlin; FERM, neurofibr 81.2 12 0.00042 28.0 9.1 77 5-93 21-101 (314)
140 1fm0_D Molybdopterin convertin 81.1 3.7 0.00013 24.8 5.1 57 22-92 21-77 (81)
141 2daj_A KIAA0977 protein, COBL- 80.9 1.7 5.9E-05 28.3 3.5 71 2-77 6-76 (91)
142 1tyg_B YJBS; alpha beta barrel 79.2 9.4 0.00032 24.2 6.7 51 14-79 25-76 (87)
143 1wgr_A Growth factor receptor- 78.2 5.6 0.00019 26.2 5.5 62 5-73 8-75 (100)
144 2y3a_A Phosphatidylinositol-4, 77.9 17 0.00058 33.0 10.1 82 3-92 48-136 (1092)
145 1f0z_A THis protein; ubiquitin 76.9 6.3 0.00022 23.1 5.1 52 13-79 4-55 (66)
146 1oey_A P67-PHOX, neutrophil cy 76.6 8.6 0.00029 24.4 5.9 48 5-62 4-51 (83)
147 2i1j_A Moesin; FERM, coiled-co 76.4 17 0.00059 30.3 9.3 80 5-96 3-87 (575)
148 2c7h_A RBBP6, retinoblastoma-b 76.3 3.7 0.00013 26.4 4.1 33 8-40 8-41 (86)
149 1y8x_B Ubiquitin-activating en 76.1 2.7 9.2E-05 27.5 3.5 63 21-90 8-82 (98)
150 3dwg_C 9.5 kDa culture filtrat 74.8 12 0.00042 23.1 8.3 72 15-95 15-92 (93)
151 3ivf_A Talin-1; FERM domain, c 74.5 21 0.00072 27.5 8.8 63 6-75 85-156 (371)
152 1rws_A Hypothetical protein PF 73.5 2.5 8.6E-05 25.8 2.7 43 21-79 24-66 (77)
153 2cu3_A Unknown function protei 71.3 13 0.00043 21.6 6.0 57 13-91 3-59 (64)
154 2k5p_A THis protein, thiamine- 69.4 10 0.00035 23.3 4.9 64 13-96 4-69 (78)
155 2kl0_A Putative thiamin biosyn 68.9 13 0.00043 22.6 5.2 61 14-96 5-65 (73)
156 3qij_A Protein 4.1; cytoskelet 66.7 7.5 0.00026 29.3 4.6 78 5-95 16-98 (296)
157 4gmv_A RAS-associated and plec 65.7 12 0.00042 28.6 5.6 37 2-39 27-63 (281)
158 4eut_A Serine/threonine-protei 65.1 41 0.0014 25.5 8.6 46 14-66 318-364 (396)
159 2k9x_A Tburm1, uncharacterized 58.1 36 0.0012 22.3 6.8 44 1-45 1-52 (110)
160 3onh_A Ubiquitin-activating en 56.7 19 0.00066 24.7 4.7 56 22-79 10-72 (127)
161 2wlb_A ETP1-FD, electron trans 56.0 20 0.00068 22.5 4.5 31 5-36 2-32 (103)
162 2kmm_A Guanosine-3',5'-BIS(dip 55.5 15 0.0005 21.4 3.6 28 8-38 2-29 (73)
163 3au4_A Myosin-X; protein-prote 55.0 22 0.00076 29.0 5.7 36 4-40 214-249 (555)
164 3hk0_A Growth factor receptor- 53.7 23 0.00077 26.7 5.1 34 5-39 7-40 (256)
165 2l52_A Methanosarcina acetivor 50.3 45 0.0015 20.9 7.5 75 7-91 4-94 (99)
166 3hhm_A Phosphatidylinositol-4, 49.2 19 0.00064 32.8 4.6 77 7-93 43-128 (1091)
167 2g1e_A Hypothetical protein TA 48.5 42 0.0014 20.1 7.9 60 22-91 19-85 (90)
168 2y5c_A Adrenodoxin-like protei 48.3 22 0.00076 22.6 3.8 28 6-34 5-32 (109)
169 3pvl_A Myosin VIIA isoform 1; 45.9 32 0.0011 29.2 5.3 48 5-59 262-309 (655)
170 3lxf_A Ferredoxin; iron, iron- 45.9 26 0.00089 22.3 3.9 27 8-35 2-28 (104)
171 3qa8_A MGC80376 protein; kinas 42.9 34 0.0012 29.1 5.1 53 14-74 319-372 (676)
172 1ip9_A BEM1 protein; ubiquitin 42.4 44 0.0015 21.3 4.4 34 5-40 11-44 (85)
173 1wz3_A Autophagy 12B, ATG12B, 41.1 40 0.0014 21.6 4.2 39 1-40 3-50 (96)
174 2kvr_A Ubiquitin carboxyl-term 40.1 23 0.00079 23.9 3.0 33 21-60 59-91 (130)
175 3tca_A Amyloid beta A4 precurs 40.0 47 0.0016 24.0 5.0 35 5-40 33-67 (291)
176 3eud_A Protein SHQ1; CS domain 39.7 30 0.001 23.3 3.4 28 51-78 59-86 (115)
177 2juo_A GA-binding protein alph 38.4 60 0.002 20.8 4.6 59 22-93 7-65 (89)
178 1jq4_A Methane monooxygenase c 36.2 51 0.0018 20.3 4.1 30 6-36 4-33 (98)
179 2bt6_A Adrenodoxin 1; rutheniu 35.8 44 0.0015 21.0 3.7 28 5-33 5-32 (108)
180 2ylm_A Ubiquitin carboxyl-term 35.4 1.6E+02 0.0056 24.0 8.0 64 6-74 339-409 (530)
181 3u52_E Phenol hydroxylase comp 34.0 1.1E+02 0.0037 20.7 7.4 60 22-90 42-107 (119)
182 1n62_A Carbon monoxide dehydro 33.8 42 0.0015 23.5 3.7 27 7-35 4-30 (166)
183 1ffv_A CUTS, iron-sulfur prote 33.5 43 0.0015 23.4 3.7 26 8-35 5-30 (163)
184 1vd2_A Protein kinase C, IOTA 33.3 75 0.0026 20.1 4.5 35 5-41 5-39 (89)
185 1rm6_C 4-hydroxybenzoyl-COA re 31.9 42 0.0015 23.3 3.4 29 7-37 3-31 (161)
186 3hrd_D Nicotinate dehydrogenas 31.6 51 0.0017 23.1 3.8 25 7-33 4-28 (160)
187 1xlq_A Putidaredoxin, PDX; [2F 31.5 61 0.0021 20.2 3.9 27 8-35 2-28 (106)
188 4a6q_A Histone deacetylase com 31.2 48 0.0017 23.1 3.5 64 25-94 61-140 (143)
189 1frr_A Ferredoxin I; electron 30.7 65 0.0022 19.5 3.8 28 7-36 2-29 (95)
190 1uwm_A Ferredoxin VI, FDVI; el 30.2 68 0.0023 20.0 3.9 25 8-33 2-26 (106)
191 1t3q_A Quinoline 2-oxidoreduct 29.5 58 0.002 22.6 3.8 30 5-36 8-37 (168)
192 3hui_A Ferredoxin; cytochrome 29.1 62 0.0021 21.4 3.7 28 5-33 20-47 (126)
193 4eku_A Protein-tyrosine kinase 29.0 99 0.0034 24.4 5.5 61 9-73 24-97 (392)
194 4dxa_B KREV interaction trappe 27.5 51 0.0018 24.8 3.4 31 6-37 5-37 (322)
195 1q1o_A Cell division control p 26.9 1.3E+02 0.0045 19.4 5.1 36 6-41 5-46 (98)
196 1v8c_A MOAD related protein; r 26.1 1.5E+02 0.0052 20.5 5.5 67 22-96 18-87 (168)
197 2y3a_A Phosphatidylinositol-4, 25.8 1.6E+02 0.0056 26.7 6.8 70 5-74 217-289 (1092)
198 2hj1_A Hypothetical protein; s 23.9 1.5E+02 0.005 18.9 7.4 65 6-79 12-78 (97)
199 3hvz_A Uncharacterized protein 23.1 1.1E+02 0.0038 18.6 3.8 28 8-38 7-34 (78)
200 4eo0_A Attachment protein G3P; 22.5 73 0.0025 20.9 2.9 24 32-64 58-81 (115)
201 1awd_A Ferredoxin; electron tr 21.6 92 0.0032 18.9 3.3 27 8-36 2-28 (94)
202 1wri_A Ferredoxin II, ferredox 20.9 1.3E+02 0.0044 18.2 3.8 29 7-37 2-30 (93)
203 3n9z_C Adrenodoxin; cytochrome 20.9 21 0.0007 23.8 0.0 30 3-33 2-31 (123)
204 1czp_A Ferredoxin I; [2Fe-2S] 20.1 1.6E+02 0.0054 17.9 4.2 30 6-36 2-32 (98)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=100.00 E-value=2.2e-35 Score=208.26 Aligned_cols=111 Identities=50% Similarity=0.922 Sum_probs=90.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
+.++|+||+++|+++.++++++++||++||++|+++||++++++|.++++|||||+||+|+|+.||++|+|+.++.|..+
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 78999999999999867999999999999999999999999999977799999999999999999999999999878888
Q ss_pred eEEEEEeccCCCCccCcCccCCCCC-CceEEeeC
Q 033522 85 ITMHVVLRPSLPDKKGEKLLSDSSK-SRCLCSIL 117 (117)
Q Consensus 85 ~t~Hlv~~~~~~~~~~~~~~~~~~~-~~c~c~i~ 117 (117)
+|||||+++.++++. +...+..+ .+|+|+||
T Consensus 95 ~tmhlVlrl~g~~kk--kk~~~~pkk~~C~C~Il 126 (126)
T 1se9_A 95 TTMHVIIQAPVTEKE--KKPKGDPKMNKCVCSVM 126 (126)
T ss_dssp EEEEEEECCCSSCCC--C----------------
T ss_pred EEEEEEeccCCcccc--ccCCCCCCCCCceEEeC
Confidence 999999999998775 44445555 99999997
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.98 E-value=5.9e-32 Score=190.30 Aligned_cols=109 Identities=28% Similarity=0.573 Sum_probs=95.6
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCc-ccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~-~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p 81 (117)
..+.|+|+||+++|+++. ++|++++||++||++|+++||.+ .+++|.++++|||||+||+|+|+.||++|+|+.++
T Consensus 14 ~~~~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~-- 90 (125)
T 2gow_A 14 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK-- 90 (125)
T ss_dssp CTTCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS--
T ss_pred CCCeEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC--
Confidence 457799999999998865 99999999999999999999999 47887668999999999999999999999999887
Q ss_pred CcceEEEEEeccCCCCccCcCcc-CCCCC-CceEEeeC
Q 033522 82 GTAITMHVVLRPSLPDKKGEKLL-SDSSK-SRCLCSIL 117 (117)
Q Consensus 82 ~~~~t~Hlv~~~~~~~~~~~~~~-~~~~~-~~c~c~i~ 117 (117)
.+|||||+++.++++.+++.. .+..+ .+| |+||
T Consensus 91 --~~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il 125 (125)
T 2gow_A 91 --TTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 125 (125)
T ss_dssp --EEEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred --ceEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence 779999999999988876333 33334 899 9997
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.95 E-value=2.3e-27 Score=164.96 Aligned_cols=97 Identities=28% Similarity=0.535 Sum_probs=86.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCc-ccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~-~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
++.|+|+||+++|+++. ++|++++||++||++|+++||.+ .+++|.++++|||||+||+|+|+.||++|+|+.++
T Consensus 14 ~~~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~--- 89 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--- 89 (116)
T ss_dssp SSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred CCeEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence 47799999999998865 99999999999999999999999 46766557999999999999999999999999887
Q ss_pred cceEEEEEeccCCCCccCcCccC
Q 033522 83 TAITMHVVLRPSLPDKKGEKLLS 105 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~~~~~~~~~~ 105 (117)
.+|||||+++.++.+..+....
T Consensus 90 -~~tlhLvlr~~~~~~~~~~~~~ 111 (116)
T 1wgh_A 90 -TTVMHLVARETLPEPNSQGQRS 111 (116)
T ss_dssp -EEEEEEEECSSCSSSCCSSCCC
T ss_pred -ceEEEEEccCCCCCCCcccccc
Confidence 6799999999999988766543
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=119.22 Aligned_cols=77 Identities=26% Similarity=0.264 Sum_probs=70.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+||+.+|+++. +++++++||++||++|++ .+++| +++|||+|+||.|+|+.+|++|+|.+|+
T Consensus 3 ~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~----- 69 (79)
T 3phx_B 3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSG-----LEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 69 (79)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred CCEEEEEEeCCCCEEE-EEECCcChHHHHHHHHHh-----hcCCC--HHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 4689999999999976 999999999999999984 45787 5999999999999999999999999998
Q ss_pred eEEEEEeccCC
Q 033522 85 ITMHVVLRPSL 95 (117)
Q Consensus 85 ~t~Hlv~~~~~ 95 (117)
++||+++..|
T Consensus 70 -~l~l~~rl~G 79 (79)
T 3phx_B 70 -TVFMNLRLRG 79 (79)
T ss_dssp -EEEEEECCBC
T ss_pred -EEEEEEecCC
Confidence 9999999764
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.83 E-value=2.8e-20 Score=121.52 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=70.8
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
+...|+|+||+.+|+++. ++|++++||.+||++|++. +++| +++|||||+||.|+|+.+|++|+| +|+
T Consensus 2 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~--- 69 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGK--- 69 (90)
T ss_dssp CCCEEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred CCcEEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCeECCCCCCHHHcCC-CCc---
Confidence 457899999999999976 9999999999999999854 5776 599999999999999999999999 787
Q ss_pred cceEEEEEeccCCCCccC
Q 033522 83 TAITMHVVLRPSLPDKKG 100 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~~~~~ 100 (117)
++||+++..++....
T Consensus 70 ---~i~l~~~~~~~~~~~ 84 (90)
T 4dwf_A 70 ---VIHLVERAPPQTHLP 84 (90)
T ss_dssp ---EEEEEECCCC-----
T ss_pred ---EEEEEecCCCCCCCC
Confidence 999999987766443
No 6
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.82 E-value=3.2e-20 Score=121.68 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=68.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+++. +++++++||++||++|++. +++| +++|||||+||.|+|+.+|++|+|.+|+ +
T Consensus 1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~------~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGGS------V 66 (88)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hhHEEEEECCeECCCCCcHHHcCCCCCC------E
Confidence 57999999999976 9999999999999999844 5777 5999999999999999999999999998 9
Q ss_pred EEEEeccCCCCccCcC
Q 033522 87 MHVVLRPSLPDKKGEK 102 (117)
Q Consensus 87 ~Hlv~~~~~~~~~~~~ 102 (117)
+||+++..++...+.+
T Consensus 67 l~l~~rl~Gg~~~~~~ 82 (88)
T 4fbj_B 67 LHLVLALRGGGGLRQK 82 (88)
T ss_dssp EEEECBCC--------
T ss_pred EEEEEECCCCCCCCcc
Confidence 9999999998765533
No 7
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.82 E-value=3.4e-20 Score=124.47 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=67.5
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
...-|+|+||+.+|+++. ++++|++||.+||++|+ +.+++| +++|||||+||+|+|..||++|+|.+|+
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I~-----~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgs--- 86 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVLS-----LQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQT--- 86 (93)
T ss_dssp --CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHH-----HHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTC---
T ss_pred CCceEEEEEECCCCCEEE-EEECCcCHHHHHHHHHH-----HHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCC---
Confidence 457899999999999977 99999999999999998 557888 5999999999999999999999999998
Q ss_pred cceEEEEE
Q 033522 83 TAITMHVV 90 (117)
Q Consensus 83 ~~~t~Hlv 90 (117)
++||.
T Consensus 87 ---tLhL~ 91 (93)
T 3plu_A 87 ---NLELY 91 (93)
T ss_dssp ---EEEEE
T ss_pred ---EEEEE
Confidence 99985
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.82 E-value=6.6e-20 Score=118.62 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=72.5
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
+...|+|+|++.+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+++
T Consensus 9 ~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~--- 77 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGGS--- 77 (88)
T ss_dssp CCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBGGGGTCCTTC---
T ss_pred CCCcEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCCC---
Confidence 447899999999999976 9999999999999999854 5677 5999999999999999999999999998
Q ss_pred cceEEEEEeccCCC
Q 033522 83 TAITMHVVLRPSLP 96 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~ 96 (117)
++||+++..++
T Consensus 78 ---~i~l~~rl~GG 88 (88)
T 3dbh_I 78 ---VLHLVLRLRGG 88 (88)
T ss_dssp ---EEEECCCCCCC
T ss_pred ---EEEEEEeCCCC
Confidence 99999998765
No 9
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.1e-20 Score=122.25 Aligned_cols=76 Identities=24% Similarity=0.579 Sum_probs=66.8
Q ss_pred EEEEEEecCCCeeeeEE--eCCCccHHHHHHHH-HhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCC-CCCCCCC
Q 033522 7 IELKFRLADGADIGPSK--FSPTTTVASLKEKI-ISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPG 82 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~--v~~~~tV~~lK~~I-~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~p~ 82 (117)
|+|+||+.+|+++. ++ +++++||.+||++| + +.+++| +++|||||+||+|+|+.+|++|+| ++|+
T Consensus 2 mqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~-----~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~s--- 70 (87)
T 2lxa_A 2 VHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLIS-----EEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANS--- 70 (87)
T ss_dssp CEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHH-----TTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGC---
T ss_pred EEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHH-----HhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCC---
Confidence 78999999999866 66 45999999999999 5 446777 599999999999999999999999 6787
Q ss_pred cceEEEEEeccCCC
Q 033522 83 TAITMHVVLRPSLP 96 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~ 96 (117)
++||+.+++..
T Consensus 71 ---tl~v~~~~~~~ 81 (87)
T 2lxa_A 71 ---TITVMIKPNLE 81 (87)
T ss_dssp ---EEEEEECCCCC
T ss_pred ---EEEEEcCCCcc
Confidence 99999998753
No 10
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.81 E-value=1.3e-19 Score=120.62 Aligned_cols=82 Identities=27% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCC-ccccccCCCCCCC
Q 033522 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVEL 80 (117)
Q Consensus 2 ~~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~ 80 (117)
|....|+|+||+.+| ++. ++|++++||.+||++|++ .+++| +++|||+|.||.|+|+ .+|++|+|.+|+
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gs- 80 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFT-VEVDRTETVSSLKDKIHI-----VENTP--IKRMQLYYSGIELADDYRNLNEYGITEFS- 80 (94)
T ss_dssp SSSCCEEEEEECSSC-EEE-EEECTTCBHHHHHHHHHH-----HSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTE-
T ss_pred cCCCCEEEEEEcCCc-EEE-EEECCCCcHHHHHHHHHH-----HHCcC--HHHEEEEECCEECCCCcccHHHCCCCCCC-
Confidence 445789999999988 655 999999999999999984 45777 5999999999999999 999999999997
Q ss_pred CCcceEEEEEeccCCCCc
Q 033522 81 PGTAITMHVVLRPSLPDK 98 (117)
Q Consensus 81 p~~~~t~Hlv~~~~~~~~ 98 (117)
++||++++.++++
T Consensus 81 -----tl~lv~r~~gg~~ 93 (94)
T 2kan_A 81 -----EIVVFLKSINRAK 93 (94)
T ss_dssp -----EEEEEECCCSSCC
T ss_pred -----EEEEEEeCCCCCC
Confidence 9999999998865
No 11
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=8.6e-20 Score=117.20 Aligned_cols=82 Identities=24% Similarity=0.343 Sum_probs=68.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+||+.+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHS----- 68 (85)
T ss_dssp --CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETBEECCTTCBTTTTTCCTTC-----
T ss_pred CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCeECCCCCCHHHCCCCCCC-----
Confidence 4689999999999976 9999999999999999854 4676 5999999999999999999999999998
Q ss_pred eEEEEEeccCCCCccC
Q 033522 85 ITMHVVLRPSLPDKKG 100 (117)
Q Consensus 85 ~t~Hlv~~~~~~~~~~ 100 (117)
++||+++..++.-.+
T Consensus 69 -~i~l~~rl~GG~g~~ 83 (85)
T 3n3k_B 69 -ALYLLLKLRGGGGGG 83 (85)
T ss_dssp -EEEEEECCC------
T ss_pred -EEEEEEeccCCCCCC
Confidence 999999998876443
No 12
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=118.20 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=67.2
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
....|+|+||+.+|+++. +++++++||++||++|++. .++| +++|||||+||.|+|+.+|++|+| +|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i-~g~--- 81 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGK--- 81 (88)
T ss_dssp -CCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred CCCeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCCCcHHHcCC-CCc---
Confidence 447799999999999976 9999999999999999854 5777 599999999999999999999999 787
Q ss_pred cceEEEEEec
Q 033522 83 TAITMHVVLR 92 (117)
Q Consensus 83 ~~~t~Hlv~~ 92 (117)
++||++|
T Consensus 82 ---~i~lv~R 88 (88)
T 4eew_A 82 ---VIHLVER 88 (88)
T ss_dssp ---EEEEEEC
T ss_pred ---EEEEEEC
Confidence 9999986
No 13
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.1e-19 Score=119.94 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=72.2
Q ss_pred CceEEEEEEecCCC--eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCcccccc--CCCCCC
Q 033522 4 EDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES--RLPVVE 79 (117)
Q Consensus 4 ~~~~~i~~k~~~G~--~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~g~ 79 (117)
...|+|+||+.+|+ ++. +++++++||.+||++|++.+|. ++| +++|||||+||+|+|+.+|++| +|.+++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~~---~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~ 78 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPE---RPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRH 78 (93)
T ss_dssp SCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTT---CCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSE
T ss_pred CcEEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhcC---CCC--hHHeEEEECCEECcCcCCHHHHhcCCCCCC
Confidence 36799999999998 444 7777999999999999976432 565 5999999999999999999999 999987
Q ss_pred CCCcceEEEEEeccCCCCcc
Q 033522 80 LPGTAITMHVVLRPSLPDKK 99 (117)
Q Consensus 80 ~p~~~~t~Hlv~~~~~~~~~ 99 (117)
+|||++++.++++.
T Consensus 79 ------~i~lv~~~~gg~~~ 92 (93)
T 1wgd_A 79 ------VLHLVCNVKSGPSS 92 (93)
T ss_dssp ------EEEEECCCCCCCCC
T ss_pred ------EEEEEeCCCCCCCC
Confidence 99999999888653
No 14
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=2.6e-19 Score=116.46 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=72.9
Q ss_pred CCceEEEEEEecCC-CeeeeE-EeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCC
Q 033522 3 GEDLIELKFRLADG-ADIGPS-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (117)
Q Consensus 3 ~~~~~~i~~k~~~G-~~~~~~-~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (117)
+...|+|+||+.+| +++. + ++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~- 74 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWAL-----FDVR--PECQRLFYRGKQLENGYTLFDYDVGLND- 74 (89)
T ss_dssp CSSCEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHH-----SCCC--TTTEEEEETTEECCSSSBHHHHTCCTTC-
T ss_pred CCCcEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCeECCCCCCHHHCCCCCCC-
Confidence 44789999999999 5765 9 599999999999999854 5677 5999999999999999999999999998
Q ss_pred CCcceEEEEEeccCCCCc
Q 033522 81 PGTAITMHVVLRPSLPDK 98 (117)
Q Consensus 81 p~~~~t~Hlv~~~~~~~~ 98 (117)
++||++++.++.+
T Consensus 75 -----~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 75 -----IIQLLVRPDSGPS 87 (89)
T ss_dssp -----EEEEEECCCCSSC
T ss_pred -----EEEEEEeCCCCCC
Confidence 9999999988754
No 15
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=2.1e-19 Score=115.21 Aligned_cols=80 Identities=26% Similarity=0.383 Sum_probs=71.1
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+|++.+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWS----- 68 (85)
T ss_dssp -CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred CeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence 5799999999999976 9999999999999999854 4676 5999999999999999999999999998
Q ss_pred eEEEEEeccCCCCc
Q 033522 85 ITMHVVLRPSLPDK 98 (117)
Q Consensus 85 ~t~Hlv~~~~~~~~ 98 (117)
++||+++..++.-
T Consensus 69 -~l~l~~r~~GG~g 81 (85)
T 3mtn_B 69 -TLFLLLRLRGGGG 81 (85)
T ss_dssp -EEEEECCCCCC--
T ss_pred -EEEEEEECcCCCC
Confidence 9999999888753
No 16
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.80 E-value=9e-20 Score=116.34 Aligned_cols=78 Identities=24% Similarity=0.313 Sum_probs=70.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
+.|+|+|++.+|+++. +++++++||.+||++|++ .+++| +++|||+|.|+.|+|+.||++|+|.+|+
T Consensus 2 ~~m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~-----~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~----- 68 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQ-----RQGVP--MNSLRFLFEGQRIADNHTPKELGMEEED----- 68 (79)
T ss_dssp CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTE-----
T ss_pred CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHH-----HHCCC--cccEEEEECCEEeCCCCCHHHcCCCCCC-----
Confidence 3689999999999976 999999999999999984 46787 4999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
++|++++..++
T Consensus 69 -~i~l~~~~~GG 79 (79)
T 2uyz_B 69 -VIEVYQEQTGG 79 (79)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEeccCC
Confidence 99999998764
No 17
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=3e-19 Score=113.48 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=68.3
Q ss_pred eEEEEEEecCCCeeeeEE-eCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 6 LIELKFRLADGADIGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~-v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
.|+|+||+.+|+++.+++ +++++||++||++|++ .+++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~-----~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~----- 69 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE-----LFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLND----- 69 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTC-----
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHH-----HHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence 589999999999853499 9999999999999984 45777 5999999999999999999999999998
Q ss_pred eEEEEEeccC
Q 033522 85 ITMHVVLRPS 94 (117)
Q Consensus 85 ~t~Hlv~~~~ 94 (117)
++||+++++
T Consensus 70 -~i~l~~r~~ 78 (78)
T 2faz_A 70 -TIQLLVRQS 78 (78)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEEeCC
Confidence 999999863
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.5e-19 Score=120.54 Aligned_cols=80 Identities=28% Similarity=0.379 Sum_probs=70.8
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
.+..|+|+||+.+|+.+. ++|++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 19 ~~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~--- 87 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 87 (98)
T ss_dssp ---CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBSGGGTCCTTE---
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHCCCCCCC---
Confidence 346799999999999976 9999999999999999854 5677 5999999999999999999999999998
Q ss_pred cceEEEEEeccCCC
Q 033522 83 TAITMHVVLRPSLP 96 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~ 96 (117)
+|||+++..++
T Consensus 88 ---~i~l~~rl~GG 98 (98)
T 4hcn_B 88 ---TLHLVLRLRGG 98 (98)
T ss_dssp ---EEEEECBCSCC
T ss_pred ---EEEEEEecCCC
Confidence 99999998774
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.80 E-value=2.7e-19 Score=117.46 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=70.2
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
....|+|+||+.+|+++. +++++++||.+||++|++. .++| +++|||+|+||.|+|+.+|++|+|.+|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--- 82 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 82 (91)
T ss_dssp CCCSEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhh-----hCCC--hhhEEEEECCeECCCcCcHHHCCCCCCC---
Confidence 357899999999999976 9999999999999999844 5777 5999999999999999999999999998
Q ss_pred cceEEEEEecc
Q 033522 83 TAITMHVVLRP 93 (117)
Q Consensus 83 ~~~t~Hlv~~~ 93 (117)
++||+++.
T Consensus 83 ---~i~l~~rl 90 (91)
T 3v6c_B 83 ---TLHLVLRL 90 (91)
T ss_dssp ---EEEEECCC
T ss_pred ---EEEEEEec
Confidence 99999886
No 20
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=9.3e-20 Score=123.74 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=67.5
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
+..|+|+||+.+|+++. +++++++||.+||++|+ +.+++| +++|||||+||+|+|+.||++|+|.+++
T Consensus 26 ~~mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia-----~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gs---- 93 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIA-----AQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGM---- 93 (100)
T ss_dssp CCEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHH-----HHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCCC----
Confidence 35699999999999976 99999999999999998 456887 5999999999999999999999999987
Q ss_pred ceEEEEEe
Q 033522 84 AITMHVVL 91 (117)
Q Consensus 84 ~~t~Hlv~ 91 (117)
++||+.
T Consensus 94 --tlhL~~ 99 (100)
T 1uh6_A 94 --NLELYY 99 (100)
T ss_dssp --EEEEEC
T ss_pred --EEEEEe
Confidence 999974
No 21
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=122.71 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=64.5
Q ss_pred CceEEEEEEecCCC--eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCcccccc--CCCCCC
Q 033522 4 EDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES--RLPVVE 79 (117)
Q Consensus 4 ~~~~~i~~k~~~G~--~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~g~ 79 (117)
...|+|+||+.+|+ ++. +++++++||.+||++|++.| +++|+ +++|||||+||+|+|+.+|++| +|.+++
T Consensus 21 ~~~m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~----~g~pp-~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVY----PSKPL-TKDQRLVYSGRLLPDHLQLKDILRKQDEYH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHS----TTCCC-TTTCCEEETTEEECTTSBTHHHHTTTCSEE
T ss_pred CCeEEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHh----cCCCC-hhhEEEEECCEECCCCCCHHHHhcCCCCCC
Confidence 36799999999998 444 89999999999999999665 34552 6999999999999999999999 999987
Q ss_pred CCCcceEEEEE
Q 033522 80 LPGTAITMHVV 90 (117)
Q Consensus 80 ~p~~~~t~Hlv 90 (117)
+||||
T Consensus 95 ------tihLv 99 (99)
T 2kdb_A 95 ------MVHLV 99 (99)
T ss_dssp ------EEEEC
T ss_pred ------EEEeC
Confidence 99986
No 22
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.80 E-value=3.5e-19 Score=111.61 Aligned_cols=76 Identities=26% Similarity=0.383 Sum_probs=67.7
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+++. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+ +
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGGS------V 66 (76)
T ss_dssp CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 57999999999876 9999999999999999854 5676 5999999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 033522 87 MHVVLRPSLP 96 (117)
Q Consensus 87 ~Hlv~~~~~~ 96 (117)
+|++++..++
T Consensus 67 i~l~~~~~GG 76 (76)
T 1ndd_A 67 LHLVLALRGG 76 (76)
T ss_dssp EEEEECCC--
T ss_pred EEEEEeCCCC
Confidence 9999998764
No 23
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.80 E-value=5.4e-19 Score=119.22 Aligned_cols=79 Identities=24% Similarity=0.575 Sum_probs=67.1
Q ss_pred CceEEEEEEecCCCeee-eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCC-CCCCCC
Q 033522 4 EDLIELKFRLADGADIG-PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELP 81 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~-~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~p 81 (117)
.+.|+|+||+.+|+.+. ++++++++||.+||++|++ +.+++| +++|||||+||+|+|+.+|++|+| .+|+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~----~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~-- 88 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLIS----EEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANS-- 88 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHH----TTSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBC--
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHH----HhcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCC--
Confidence 46799999999999755 2366799999999999943 335676 599999999999999999999999 9998
Q ss_pred CcceEEEEEeccC
Q 033522 82 GTAITMHVVLRPS 94 (117)
Q Consensus 82 ~~~~t~Hlv~~~~ 94 (117)
++||+++.+
T Consensus 89 ----ti~lmvskp 97 (98)
T 4a20_A 89 ----TITVMIKPN 97 (98)
T ss_dssp ----EEEEEECCC
T ss_pred ----EEEEEEeCC
Confidence 999998764
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=4.5e-19 Score=114.77 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=72.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
+...|+|+||+.+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~--- 72 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQ-----QGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSD--- 72 (87)
T ss_dssp CSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHH-----TCCC--TTTEEEEETTEECCSSSBHHHHTCCTTE---
T ss_pred CCCCEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHH-----hCCC--hHHEEEEECCEEccCCCCHHHCCCCCCC---
Confidence 346899999999999876 9999999999999999854 5676 5999999999999999999999999997
Q ss_pred cceEEEEEeccCCCC
Q 033522 83 TAITMHVVLRPSLPD 97 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~~ 97 (117)
++||+++..++.
T Consensus 73 ---~i~l~~~~~GG~ 84 (87)
T 1wh3_A 73 ---TLILSKKKGSGP 84 (87)
T ss_dssp ---EEEEEECSCCCS
T ss_pred ---EEEEEEeccCCC
Confidence 999999988764
No 25
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.80 E-value=5.2e-19 Score=113.84 Aligned_cols=81 Identities=26% Similarity=0.360 Sum_probs=68.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+||+.+|+.+. +++++++||++||++|++.|+ .+++| +++|||+|+||.|+|+.+|++|+|.+|+
T Consensus 4 ~~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~----- 73 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN----- 73 (85)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTS-----
T ss_pred ceEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCC-----
Confidence 5789999999999976 999999999999999986531 25676 5999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
++||+.+...+
T Consensus 74 -~i~l~~~~~~~ 84 (85)
T 2wyq_A 74 -FVVVMVTKTKA 84 (85)
T ss_dssp -EEEEEEC----
T ss_pred -EEEEEEcCCCC
Confidence 99999877643
No 26
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.79 E-value=2.3e-19 Score=117.24 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=68.6
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCee-cCCCccccccCCCCCCCCCc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI-LEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~-L~D~~tL~~~~i~~g~~p~~ 83 (117)
.-++|++++.+|+++. ++|++++||++||++|++. +++| +++|||||+||. |+|+.+|++|+|.+|+
T Consensus 9 ~~~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs---- 76 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFE-LEVDYRDTLLVVKQKIERS-----QHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTS---- 76 (84)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTS----
T ss_pred CceEEEEEecCCcEEE-EEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCC----
Confidence 5689999999999976 9999999999999999854 5777 599999999999 9999999999999998
Q ss_pred ceEEEEEecc
Q 033522 84 AITMHVVLRP 93 (117)
Q Consensus 84 ~~t~Hlv~~~ 93 (117)
++||+++|
T Consensus 77 --~i~lv~~p 84 (84)
T 2kk8_A 77 --DIQLEVSS 84 (84)
T ss_dssp --CEEEEECC
T ss_pred --EEEEEEcC
Confidence 99999875
No 27
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.79 E-value=2.4e-19 Score=119.65 Aligned_cols=78 Identities=24% Similarity=0.313 Sum_probs=71.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+||+.+|+++. ++|++++||.+||++|++ .+++| +++|||||.|+.|+|+.||++|+|.+|+
T Consensus 20 ~~m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~~-----~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~----- 86 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQ-----RQGVP--MNSLRFLFEGQRIADNHTPKELGMEEED----- 86 (97)
T ss_dssp CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTC-----
T ss_pred CcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCC-----
Confidence 5699999999999976 999999999999999984 46787 4999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
+|||+++..++
T Consensus 87 -~I~l~~~~~GG 97 (97)
T 1wyw_B 87 -VIEVYQEQTGG 97 (97)
T ss_dssp -EEEEEESSSCC
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=117.67 Aligned_cols=79 Identities=25% Similarity=0.228 Sum_probs=67.6
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcce
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~ 85 (117)
.|+|+||+.+|+.+. +++++++||++||++|++ .+++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 4 ~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~-----~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~------ 69 (88)
T 2hj8_A 4 PLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSG-----LEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLS------ 69 (88)
T ss_dssp EEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHH-----HTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTC------
T ss_pred cEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHH-----HhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCC------
Confidence 689999999999876 999999999999999984 45777 5999999999999999999999999998
Q ss_pred EEEEEeccCCCCc
Q 033522 86 TMHVVLRPSLPDK 98 (117)
Q Consensus 86 t~Hlv~~~~~~~~ 98 (117)
++||+.+..++..
T Consensus 70 ~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 70 TVFMNLRLRGGLE 82 (88)
T ss_dssp EEEEEEC------
T ss_pred EEEEEEEcCCCcc
Confidence 9999999887753
No 29
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.79 E-value=4.7e-19 Score=116.75 Aligned_cols=79 Identities=29% Similarity=0.419 Sum_probs=69.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+++. +++++++||.+||++|++. .++| ++.|||+|.||.|+|+.+|++|+|.+|+ +
T Consensus 2 m~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~------~ 67 (96)
T 3k9o_B 2 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 67 (96)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred cEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhh-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 78999999999976 9999999999999999854 4676 5999999999999999999999999998 9
Q ss_pred EEEEeccCCCCcc
Q 033522 87 MHVVLRPSLPDKK 99 (117)
Q Consensus 87 ~Hlv~~~~~~~~~ 99 (117)
|||+++..++.+.
T Consensus 68 i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 68 LHLVLRLRGYADL 80 (96)
T ss_dssp EEEEECCCC----
T ss_pred EEEEEEcCCCCcc
Confidence 9999999988653
No 30
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=1.3e-18 Score=115.37 Aligned_cols=82 Identities=27% Similarity=0.350 Sum_probs=70.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+.+. ++|++++||++||++|++.++ .+++| +++|||||+||.|+|+.+|++|+|.+|+ +
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~------~ 69 (95)
T 1uel_A 1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKN------F 69 (95)
T ss_dssp CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSS------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCC------E
Confidence 57999999999976 999999999999999986531 15676 5999999999999999999999999998 9
Q ss_pred EEEEeccCCCCcc
Q 033522 87 MHVVLRPSLPDKK 99 (117)
Q Consensus 87 ~Hlv~~~~~~~~~ 99 (117)
+||+++...+++.
T Consensus 70 i~l~~~~~~~~~~ 82 (95)
T 1uel_A 70 VVVMVTKPKAVST 82 (95)
T ss_dssp EEEEESSCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999987655543
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.78 E-value=9.5e-19 Score=109.61 Aligned_cols=76 Identities=30% Similarity=0.449 Sum_probs=68.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+.+. +++++++||++||++|++. .++| ++.|||+|.||.|+|+.+|++|++.+|+ +
T Consensus 1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~ 66 (76)
T 3a9j_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRES------T 66 (76)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTTC------E
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeECCCCCcHHHcCCCCCC------E
Confidence 57899999999876 9999999999999999854 4676 5999999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 033522 87 MHVVLRPSLP 96 (117)
Q Consensus 87 ~Hlv~~~~~~ 96 (117)
+|++++..++
T Consensus 67 i~l~~~~~GG 76 (76)
T 3a9j_A 67 LHLVLRLRGG 76 (76)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEeCCCC
Confidence 9999998764
No 32
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=5.5e-19 Score=119.93 Aligned_cols=78 Identities=15% Similarity=0.058 Sum_probs=64.5
Q ss_pred EEEEEecC----CCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 8 ELKFRLAD----GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 8 ~i~~k~~~----G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
.|.|+..+ |+.+. ++|++++||.+||++|++ .+++| +++|||||+||+|+|+.||++|+|.+|+
T Consensus 17 ti~V~~~~~~~~~~~~~-lev~~~~TV~~lK~kI~~-----k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gs---- 84 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAE-----TFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNV---- 84 (100)
T ss_dssp EEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHH-----HTTCC--STTCEEEETTEECCTTSBHHHHTCCSSE----
T ss_pred EEEEEecCCCCCCcEEE-EEeCCcCHHHHHHHHHHH-----HHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCC----
Confidence 45556666 66755 999999999999999984 46787 5999999999999999999999999998
Q ss_pred ceEEEEEeccCCCCccC
Q 033522 84 AITMHVVLRPSLPDKKG 100 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~~~~ 100 (117)
+| +++++.+....+
T Consensus 85 --ti-~vl~lrg~~~~~ 98 (100)
T 1wju_A 85 --KA-MVLELKQSSGPS 98 (100)
T ss_dssp --EE-EEECCCCCCCSC
T ss_pred --EE-EEEEECCCCccc
Confidence 88 567766665544
No 33
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.4e-19 Score=119.84 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=66.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+.+. ++|++++||.+||++|+.. .++| +++|||||+||.|+|+.+|++|+|.+|+ +
T Consensus 2 m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQS-----ISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGD------Q 67 (106)
T ss_dssp -CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHT-----TTSC--GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCEECCCcCCHHHcCCCCCC------E
Confidence 68999999999976 9999999999999999854 4676 5999999999999999999999999998 9
Q ss_pred EEEEeccCCCC
Q 033522 87 MHVVLRPSLPD 97 (117)
Q Consensus 87 ~Hlv~~~~~~~ 97 (117)
|||+++...+.
T Consensus 68 i~lv~~~~~~~ 78 (106)
T 3m62_B 68 VVFMVSQKKST 78 (106)
T ss_dssp EEEECCC----
T ss_pred EEEEEcCCCCC
Confidence 99999876644
No 34
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=111.21 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=69.6
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
+...|+|+|++.+|+.+. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 4 ~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~--- 72 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEK-----LNVP--VRQQRLLFKGKALADGKRLSDYSIGPNS--- 72 (81)
T ss_dssp SSSSEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEECCTTSBGGGGTCCSSB---
T ss_pred CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCCC---
Confidence 346799999999998876 9999999999999999854 4676 5999999999999999999999999998
Q ss_pred cceEEEEEeccC
Q 033522 83 TAITMHVVLRPS 94 (117)
Q Consensus 83 ~~~t~Hlv~~~~ 94 (117)
++||++++.
T Consensus 73 ---~i~l~~~~~ 81 (81)
T 2dzi_A 73 ---KLNLVVKPL 81 (81)
T ss_dssp ---CCEEECCCC
T ss_pred ---EEEEEEeCC
Confidence 999998763
No 35
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=8.6e-19 Score=114.81 Aligned_cols=78 Identities=31% Similarity=0.438 Sum_probs=65.9
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcce
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~ 85 (117)
-|+|.+++.+|+++. +++++++||++||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 9 ~~~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------ 74 (88)
T 1sif_A 9 GLQLFIKTLTGKTFT-VEMEPSDTIENLKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------ 74 (88)
T ss_dssp -CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBSGGGTCCTTC------
T ss_pred ceEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCcHHHcCCCCCC------
Confidence 478999999999976 9999999999999999843 5777 5999999999999999999999999998
Q ss_pred EEEEEeccCCCC
Q 033522 86 TMHVVLRPSLPD 97 (117)
Q Consensus 86 t~Hlv~~~~~~~ 97 (117)
++||+++..++.
T Consensus 75 ~i~l~~r~~GG~ 86 (88)
T 1sif_A 75 TLHLVLRLRGGG 86 (88)
T ss_dssp EEEEEC------
T ss_pred EEEEEEeCCCCC
Confidence 999999988764
No 36
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.77 E-value=1.7e-18 Score=118.18 Aligned_cols=78 Identities=29% Similarity=0.417 Sum_probs=70.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+||+.+|+.+. ++|++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+++
T Consensus 34 ~~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs----- 100 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 100 (111)
T ss_dssp GCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTTTTTCCTTC-----
T ss_pred ccEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHH-----hCCC--hHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 4799999999999976 9999999999999999854 4677 5999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
+|||+++..++
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 3vdz_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 37
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=4.1e-18 Score=112.57 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=70.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCC-ccccccCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELP 81 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~p 81 (117)
+...|+|+||+.+|+.+. ++|++++||.+||++|+.. + +++|||||.||.|+|+ .+|++|+|.+|+
T Consensus 4 ~~~~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~-----~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~-- 70 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPG-----Q-----ESQMKLIYQGRLLQDPARTLSSLNITNNC-- 70 (95)
T ss_dssp CCCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSS-----T-----TTTCEEEETTEECCCSSCBTTTTTCCTTE--
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhh-----C-----cCcEEEEECCEEccCCcCCHHHcCCCCCC--
Confidence 457799999999999876 9999999999999999743 2 4899999999999999 999999999998
Q ss_pred CcceEEEEEeccCCCCccC
Q 033522 82 GTAITMHVVLRPSLPDKKG 100 (117)
Q Consensus 82 ~~~~t~Hlv~~~~~~~~~~ 100 (117)
+|||+++...++...
T Consensus 71 ----~i~l~~~~~~~~~~~ 85 (95)
T 1wia_A 71 ----VIHCHRSPPGAAVSG 85 (95)
T ss_dssp ----EEEEECCCCCCCCCC
T ss_pred ----EEEEEECCCCCCCCC
Confidence 999999887665443
No 38
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=4e-19 Score=121.43 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=70.0
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCC-------------CcceeEEEcCeecC-CCc
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKT-------------VNNVQLIHAGKILE-DNM 68 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~-------------~~~qrLI~~Gk~L~-D~~ 68 (117)
++..|+|+|++++|+++. ++|++++||++||++|++. +++|.. .++|||||+||+|. |++
T Consensus 4 ~~~~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~-----~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~ 77 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRY-----VQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRK 77 (105)
T ss_dssp CCCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSS
T ss_pred CCCcEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHH-----hCCCcccccCcceeeeeecceeEEEEeCCcCccCCcC
Confidence 457799999999999976 9999999999999999865 333321 14789999999996 679
Q ss_pred cccccCCCCCCCCCcceEEEEEeccCCC
Q 033522 69 TIAESRLPVVELPGTAITMHVVLRPSLP 96 (117)
Q Consensus 69 tL~~~~i~~g~~p~~~~t~Hlv~~~~~~ 96 (117)
||++|+|.+|+ ++|+|++..+.
T Consensus 78 tL~dygI~~g~------~l~lv~~lr~~ 99 (105)
T 1v2y_A 78 KLRDYGIRNRD------EVSFIKKLGQK 99 (105)
T ss_dssp BHHHHTCCSSE------EEEEEECSCSC
T ss_pred CHHHcCCCCCC------EEEEEehhccC
Confidence 99999999998 99999998765
No 39
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=120.61 Aligned_cols=81 Identities=26% Similarity=0.333 Sum_probs=69.7
Q ss_pred CCceEEEEEEec-CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCC
Q 033522 3 GEDLIELKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (117)
Q Consensus 3 ~~~~~~i~~k~~-~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p 81 (117)
++..+.|+|++. .|..+ +++|+++.||++||++|+.. .++|+ ++|||||+||+|+|++||++|||++|.
T Consensus 12 ~~~~itvkv~l~~~~~k~-tv~v~~d~TV~dLKe~ls~~-----~~iP~--e~qrLIy~GKiLKD~eTL~~~gIk~g~-- 81 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEI-VIPFKVDTILKYLKDHFSHL-----LGIPH--SVLQIRYSGKILKNNETLVQHGVKPQE-- 81 (118)
T ss_dssp CSSCEEEEEEETTTCCEE-EEEECSSSCSHHHHHHHHHH-----HTCCT--TTEEEEETTEEECSSCCHHHHSCCSSC--
T ss_pred cCccEEEEEEEcCCCcEE-EEEeCCCCcHHHHHHHHHhh-----hCCCh--HHEEEEECCeEcCCcchHHHcCCCCCC--
Confidence 356788888855 45555 49999999999999999854 46774 999999999999999999999999999
Q ss_pred CcceEEEEEeccCCCC
Q 033522 82 GTAITMHVVLRPSLPD 97 (117)
Q Consensus 82 ~~~~t~Hlv~~~~~~~ 97 (117)
|||||++...+.
T Consensus 82 ----TIhLvi~s~~p~ 93 (118)
T 2daf_A 82 ----IVQVEIFSTNPD 93 (118)
T ss_dssp ----EEEEEEEESCTT
T ss_pred ----EEEEEEecCCCc
Confidence 999999987764
No 40
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.3e-18 Score=116.50 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=70.9
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
+..|+|+||+.+|+.+. ++|++++||.+||++|+. ..++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 21 ~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~---- 88 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHA-----AEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDY---- 88 (106)
T ss_dssp CCSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHH-----TTCCC--STTCEEEETTEECCTTSHHHHCCCSSSC----
T ss_pred CCeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHH-----HHCcC--cccEEEEECCEECCCCCcHHHcCCCCCC----
Confidence 35699999999999876 999999999999999984 45777 5999999999999999999999999998
Q ss_pred ceEEEEEeccCCC
Q 033522 84 AITMHVVLRPSLP 96 (117)
Q Consensus 84 ~~t~Hlv~~~~~~ 96 (117)
++||+++...+
T Consensus 89 --ti~lv~~~~~~ 99 (106)
T 1ttn_A 89 --VVQVIVSQPVQ 99 (106)
T ss_dssp --EEEEECCCSSC
T ss_pred --EEEEEEeCCCC
Confidence 99999987654
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.76 E-value=3.5e-18 Score=107.79 Aligned_cols=74 Identities=26% Similarity=0.364 Sum_probs=66.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+|++ +|+.+. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 3 M~m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~----- 68 (77)
T 2bwf_A 3 MSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDGH----- 68 (77)
T ss_dssp EEEEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred eEEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCC-----
Confidence 458999999 888865 9999999999999999843 5777 5999999999999999999999999998
Q ss_pred eEEEEEecc
Q 033522 85 ITMHVVLRP 93 (117)
Q Consensus 85 ~t~Hlv~~~ 93 (117)
++||+.++
T Consensus 69 -~i~l~~~~ 76 (77)
T 2bwf_A 69 -SVHLVKSQ 76 (77)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEEcC
Confidence 99998765
No 42
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.76 E-value=2.9e-18 Score=122.05 Aligned_cols=79 Identities=25% Similarity=0.251 Sum_probs=70.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
+.|+|++|+.+|+++. +++++++||++||++|++ .+++| +++|||+|+|+.|+|+.+|++|+|.+|+
T Consensus 80 ~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~----- 146 (159)
T 3rt3_B 80 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSG-----LEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 146 (159)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHH-----HHCCC--HHHEEEEECCeecCCCCCHHHcCCCCCC-----
Confidence 5688999999999976 999999999999999984 45787 5999999999999999999999999998
Q ss_pred eEEEEEeccCCCC
Q 033522 85 ITMHVVLRPSLPD 97 (117)
Q Consensus 85 ~t~Hlv~~~~~~~ 97 (117)
++||+++..+++
T Consensus 147 -~l~l~~rl~GG~ 158 (159)
T 3rt3_B 147 -TVFMNLRLRGGG 158 (159)
T ss_dssp -EEEEEECCC---
T ss_pred -EEEEEEecCCCC
Confidence 999999998875
No 43
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=114.43 Aligned_cols=76 Identities=22% Similarity=0.186 Sum_probs=66.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+||+ |+.+. ++|++++||++||++|++ .+++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 18 ~~m~I~Vk~--g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gs----- 82 (93)
T 2l7r_A 18 GSMQLFVRA--QELHT-FEVTGQETVAQIKAHVAS-----LEGIA--PEDQVVLLAGAPLEDEATLGQCGVEALT----- 82 (93)
T ss_dssp --CEEEEES--SSEEE-EECCSSCBHHHHHHHHHH-----HHTCC--GGGCEEEETTEECCTTSBHHHHTCCSSC-----
T ss_pred CcEEEEEEC--CCEEE-EEeCCCCcHHHHHHHHHH-----HhCcC--hhHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 458889988 88866 999999999999999984 45777 5999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
++||+++..++
T Consensus 83 -tI~lv~rl~GG 93 (93)
T 2l7r_A 83 -TLEVAGRMLGG 93 (93)
T ss_dssp -EEEEECCCCCC
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 44
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.76 E-value=3.7e-18 Score=124.52 Aligned_cols=80 Identities=28% Similarity=0.394 Sum_probs=70.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+++. +++++++||.+||++|++. +++| +++|||+|+||.|+|+.+|++|+|.+|+ +
T Consensus 1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gs------t 66 (169)
T 3l0w_B 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (169)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCccccCcCcHHHcCCCCCC------E
Confidence 58999999999976 9999999999999999854 5677 5999999999999999999999999998 9
Q ss_pred EEEEeccCCCCccC
Q 033522 87 MHVVLRPSLPDKKG 100 (117)
Q Consensus 87 ~Hlv~~~~~~~~~~ 100 (117)
+||+++..++.+.+
T Consensus 67 I~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 67 LHLVLRLRGGGGET 80 (169)
T ss_dssp EEEEECCCC---CC
T ss_pred EEEEEEeccccccc
Confidence 99999999887765
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.76 E-value=5.3e-18 Score=112.59 Aligned_cols=80 Identities=29% Similarity=0.428 Sum_probs=69.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+.+. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+ +
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~-----~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~ 66 (98)
T 1yx5_B 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (98)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----TCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCCC------E
Confidence 57999999999876 9999999999999999854 4676 5999999999999999999999999998 9
Q ss_pred EEEEeccCCCCccC
Q 033522 87 MHVVLRPSLPDKKG 100 (117)
Q Consensus 87 ~Hlv~~~~~~~~~~ 100 (117)
+||+++..++..-.
T Consensus 67 i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 67 LHLVLRLRGGRDPN 80 (98)
T ss_dssp EEEEECCCCC----
T ss_pred EEEEEeCCCCCcCc
Confidence 99999988765433
No 46
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1.8e-18 Score=114.41 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=70.4
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+|++. |+.+. ++|++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 16 ~~m~i~Vk~~-g~~~~-~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~----- 81 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHE-FFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDGS----- 81 (96)
T ss_dssp CEEEEEEECS-SSEEE-EEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTTE-----
T ss_pred CcEEEEEEEC-CeEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCcCCHHHCCCCCCC-----
Confidence 6799999998 88876 9999999999999999854 5676 5999999999999999999999999998
Q ss_pred eEEEEEeccCCCC
Q 033522 85 ITMHVVLRPSLPD 97 (117)
Q Consensus 85 ~t~Hlv~~~~~~~ 97 (117)
+|||+++..+++
T Consensus 82 -~i~l~~~~~~g~ 93 (96)
T 1wx8_A 82 -TVHVVVRSHSGP 93 (96)
T ss_dssp -EEECCBCCSSCS
T ss_pred -EEEEEEeCCCCC
Confidence 999999988764
No 47
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.75 E-value=5.4e-18 Score=115.37 Aligned_cols=80 Identities=25% Similarity=0.300 Sum_probs=72.2
Q ss_pred ceEEEEEEec---CCCeeeeEEeCC-CccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCC
Q 033522 5 DLIELKFRLA---DGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (117)
Q Consensus 5 ~~~~i~~k~~---~G~~~~~~~v~~-~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (117)
..|+|+|++. +|+.+. +++++ ++||.+||++|+. .+++| +++|||+|.|++|+|+.+|++|+|.+|+
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~-----~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~- 96 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAG-----EIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGE- 96 (111)
T ss_dssp SCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHH-----HTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSC-
T ss_pred CcEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHH-----HHCCC--HHHeEEEECCEECCCCCcHHHCCCCCCC-
Confidence 5799999998 888876 99998 9999999999984 45787 5999999999999999999999999998
Q ss_pred CCcceEEEEEeccCCCCc
Q 033522 81 PGTAITMHVVLRPSLPDK 98 (117)
Q Consensus 81 p~~~~t~Hlv~~~~~~~~ 98 (117)
++||+++..++.+
T Consensus 97 -----~l~l~~r~~GGk~ 109 (111)
T 1we6_A 97 -----ILTLSLRERSGPS 109 (111)
T ss_dssp -----EEEEECSSCCSSC
T ss_pred -----EEEEEEEcCCCCC
Confidence 9999999988754
No 48
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.2e-18 Score=114.00 Aligned_cols=80 Identities=26% Similarity=0.327 Sum_probs=71.1
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
...|+|+|++.+|+ +. ++|++++||.+||++|++. .++| +++|||||.||.|+|+.+|++|+|.+|+
T Consensus 20 ~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gs---- 86 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGL---- 86 (100)
T ss_dssp TTEEEEEEECSSCE-EE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBHHHHTCCTTC----
T ss_pred CCeEEEEEEcCCCc-EE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHCCCCCCC----
Confidence 36799999999986 44 9999999999999999843 5777 5999999999999999999999999998
Q ss_pred ceEEEEEeccCCCCc
Q 033522 84 AITMHVVLRPSLPDK 98 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~~ 98 (117)
++||+++..+++.
T Consensus 87 --tI~l~~r~~~~p~ 99 (100)
T 1yqb_A 87 --TVHLVIKRQHRAM 99 (100)
T ss_dssp --EEEEEECCCCSCC
T ss_pred --EEEEEEcCCCCCC
Confidence 9999999877653
No 49
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=6.8e-18 Score=117.86 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=66.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+|++. |+.+. ++|++++||.+||++|+.. .++| +++|||||.||.|+|+.+|++|+|.+|+
T Consensus 31 ~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gs----- 96 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEE-FAVPENSSVQQFKEAISKR-----FKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGL----- 96 (125)
T ss_dssp CCEEEEEECS-SCEEE-EEECTTCCHHHHHHHHHHH-----HCSC--SSSEEEEETTEEESTTSCGGGTTCSSSE-----
T ss_pred CcEEEEEEeC-CeEEE-EEECCCCcHHHHHHHHHHH-----HCcC--cceEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence 6799999998 88876 9999999999999999844 5676 5999999999999999999999999987
Q ss_pred eEEEEEeccCCCCc
Q 033522 85 ITMHVVLRPSLPDK 98 (117)
Q Consensus 85 ~t~Hlv~~~~~~~~ 98 (117)
+|||+.+..++..
T Consensus 97 -tI~lv~~~~gg~~ 109 (125)
T 1j8c_A 97 -TVHLVIKRDPNSS 109 (125)
T ss_dssp -EEEEEEC------
T ss_pred -EEEEEeccCCCCC
Confidence 9999999887654
No 50
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=112.65 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=69.4
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
+...|+|+|+.. |+.+. ++|++++||++||++|+.. .++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 22 ~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~--- 89 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEE-FAVPENSSVQQFKEEISKR-----FKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGL--- 89 (101)
T ss_dssp -CCCEEEEEECS-SCEEE-EEECSCCCHHHHHHHHHHH-----HTCC--GGGEEEEETTEEECTTCCTGGGTCCTTC---
T ss_pred CCCeEEEEEEeC-CcEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCCC---
Confidence 346799999998 88865 9999999999999999843 5777 5999999999999999999999999998
Q ss_pred cceEEEEEeccCCC
Q 033522 83 TAITMHVVLRPSLP 96 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~ 96 (117)
+|||+.++.+.
T Consensus 90 ---~I~l~~~~~~~ 100 (101)
T 2klc_A 90 ---TVHLVIKTQNR 100 (101)
T ss_dssp ---EEEEEECCSSC
T ss_pred ---EEEEEEcCCCC
Confidence 99999987653
No 51
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=1e-17 Score=114.98 Aligned_cols=81 Identities=28% Similarity=0.355 Sum_probs=73.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..++|++++.+|+++. +++++++||.+||++|++ ..++| +++|||+|+||.|+|+.+|++|+|.+|+
T Consensus 8 ~~~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gs----- 74 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRES----- 74 (114)
T ss_dssp CCCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTCBTTTTTCCSSC-----
T ss_pred CcEEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHH-----HHCcC--hHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 5689999999999976 999999999999999984 45777 5999999999999999999999999998
Q ss_pred eEEEEEeccCCCCcc
Q 033522 85 ITMHVVLRPSLPDKK 99 (117)
Q Consensus 85 ~t~Hlv~~~~~~~~~ 99 (117)
++||++++.++...
T Consensus 75 -tI~l~~~~~GG~~~ 88 (114)
T 2kdi_A 75 -TLHLVLRLRGGSMG 88 (114)
T ss_dssp -EEEEEECCCSSCCC
T ss_pred -EEEEEEEcCCCcee
Confidence 99999999887644
No 52
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.74 E-value=5.2e-18 Score=118.19 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=64.6
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCC-CCcc
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTA 84 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-p~~~ 84 (117)
++.|++|. +++...+++++++||.+||++|+ +.+++| +++|||||+||+|+|++||++|||..+.+ |...
T Consensus 2 ~vFl~Ikr--~ktTI~ldve~sdTV~~lK~kI~-----~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~ 72 (118)
T 4ajy_B 2 DVFLMIRR--HKTTIFTDAKESSTVFELKRIVE-----GILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp EEEEEEEE--BTEEEEEEEETTSBHHHHHHHHH-----HHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBC
T ss_pred ceEEEEec--CCEEEEEEcCCCChHHHHHHHHH-----HHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCC
Confidence 45555544 66323389999999999999998 456887 59999999999999999999999999444 5555
Q ss_pred eEEEEEecc
Q 033522 85 ITMHVVLRP 93 (117)
Q Consensus 85 ~t~Hlv~~~ 93 (117)
.|+||++|.
T Consensus 73 atl~Lvlr~ 81 (118)
T 4ajy_B 73 ATVGLAFRA 81 (118)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEEec
Confidence 699999996
No 53
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.1e-17 Score=112.86 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=71.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
...|+|+||..+|+ +. ++|++++||.+||++|++. .++| +++|||||.||.|+|+.+|++|+|.+|+
T Consensus 15 ~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~---- 81 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGL---- 81 (106)
T ss_dssp SSEEEEEEECSSCE-EE-EEEETTCCHHHHHHHHHHH-----HTCC--TTTEEEEETTEECCTTSCHHHHTCCTTE----
T ss_pred CceEEEEEEeCCCc-EE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCCC----
Confidence 36699999999886 44 9999999999999999854 5676 5999999999999999999999999987
Q ss_pred ceEEEEEeccCCCCccC
Q 033522 84 AITMHVVLRPSLPDKKG 100 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~~~~ 100 (117)
+|||+++..++....
T Consensus 82 --~i~l~~~~~~~~~~~ 96 (106)
T 1wx7_A 82 --TVHLVIKRQHRAMGN 96 (106)
T ss_dssp --EEEEEECCCCCSCCC
T ss_pred --EEEEEEcCCCCCCCC
Confidence 999999988776543
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=113.36 Aligned_cols=78 Identities=29% Similarity=0.417 Sum_probs=70.4
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+||+.+|+.+. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 34 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~gs----- 100 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 100 (111)
T ss_dssp SCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCSSCBTTTTTCCTTC-----
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 5799999999999876 9999999999999999854 4676 5999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
++||+++..++
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 2ojr_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEeCCCC
Confidence 99999998764
No 55
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.74 E-value=3.5e-18 Score=119.03 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=63.7
Q ss_pred eEEEEEEecCCCe-eeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCC-CCc
Q 033522 6 LIELKFRLADGAD-IGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGT 83 (117)
Q Consensus 6 ~~~i~~k~~~G~~-~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-p~~ 83 (117)
+|.|+++. |++ +. +++++++||++||++|+ +.+++| +++|||||+||+|+|+.||++|||.+..+ +..
T Consensus 2 ~mfl~ir~--~ktti~-lev~~sdTV~~lK~kI~-----~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~ 71 (118)
T 2fnj_B 2 DVFLMIRR--HKTTIF-TDAKESSTVFELKRIVE-----GILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQA 71 (118)
T ss_dssp EEEEEEEE--BTEEEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTB
T ss_pred cEEEEEec--CCEEEE-EEeCCcChHHHHHHHHH-----HHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCC
Confidence 46666655 654 44 99999999999999998 557888 59999999999999999999999994222 222
Q ss_pred ceEEEEEeccCCC
Q 033522 84 AITMHVVLRPSLP 96 (117)
Q Consensus 84 ~~t~Hlv~~~~~~ 96 (117)
.+|+||+++ .++
T Consensus 72 ~stL~L~lr-~~g 83 (118)
T 2fnj_B 72 PATVGLAFR-ADD 83 (118)
T ss_dssp CEEEEEEEB-SSS
T ss_pred CCEEEEEec-CCC
Confidence 459999999 444
No 56
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.58 E-value=1.8e-19 Score=113.79 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=67.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+++. +++++++||++||++|++ ..++| +++|||+|.|+.|+|+.+|++|+|.+|+ +
T Consensus 1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~------~ 66 (76)
T 3b1l_X 1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAK-----QQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQS------I 66 (76)
Confidence 57899999999876 999999999999999984 45777 5999999999999999999999999998 9
Q ss_pred EEEEeccCC
Q 033522 87 MHVVLRPSL 95 (117)
Q Consensus 87 ~Hlv~~~~~ 95 (117)
+||++++.+
T Consensus 67 i~l~~rlrg 75 (76)
T 3b1l_X 67 VHIVQRPRR 75 (76)
Confidence 999998764
No 57
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.73 E-value=1.4e-17 Score=114.05 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=71.1
Q ss_pred ceEEEEEEecC----------CCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccC
Q 033522 5 DLIELKFRLAD----------GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR 74 (117)
Q Consensus 5 ~~~~i~~k~~~----------G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (117)
..|+|+|+..+ |+++. ++|++++||.+||++|+.. +++| +++|||+|.|+.|+|+.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~ 95 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHEA-----TGMP--AGKQKLQYEGIFIKDSNSLAYYN 95 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHHH-----SSCC--TTTEEEEETTEEECTTSBHHHHT
T ss_pred CCEEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHHH-----HCCC--hHHEEEEECCEECCCCCCHHHCC
Confidence 57888898864 66765 9999999999999999844 5777 59999999999999999999999
Q ss_pred CCCCCCCCcceEEEEEeccCCCCcc
Q 033522 75 LPVVELPGTAITMHVVLRPSLPDKK 99 (117)
Q Consensus 75 i~~g~~p~~~~t~Hlv~~~~~~~~~ 99 (117)
|.+|+ +|||+++..++.+.
T Consensus 96 i~~g~------~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 96 MASGA------VIHLALKERSGPSS 114 (115)
T ss_dssp CCSSC------EEEEEECCCSCCSC
T ss_pred CCCCC------EEEEEEEcCCCCCC
Confidence 99998 99999999988653
No 58
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.4e-18 Score=115.18 Aligned_cols=76 Identities=26% Similarity=0.383 Sum_probs=64.7
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
++..|+|+|++ +|+.+. +++++++||++||++|++. +++| +++|||+|+||.|+|+.+|++|+|.+|+
T Consensus 25 ~~m~i~I~Vk~-~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g~--- 92 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDGH--- 92 (101)
T ss_dssp ----CCEEEEC-SSCCCC-BCCCTTSBHHHHHHHHHHH-----HSCC--STTCCEEETTEECCTTSBTTTTTCCTTE---
T ss_pred CCcEEEEEEEE-CCEEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCcCcHHHCCCCCCC---
Confidence 45678888987 888866 9999999999999999854 5777 5999999999999999999999999998
Q ss_pred cceEEEEEecc
Q 033522 83 TAITMHVVLRP 93 (117)
Q Consensus 83 ~~~t~Hlv~~~ 93 (117)
++||+.+.
T Consensus 93 ---tI~lv~~~ 100 (101)
T 3m63_B 93 ---SVHLVKSQ 100 (101)
T ss_dssp ---EEEECCCC
T ss_pred ---EEEEEeCC
Confidence 99998764
No 59
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.72 E-value=1.7e-17 Score=123.50 Aligned_cols=81 Identities=30% Similarity=0.363 Sum_probs=73.5
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcce
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~ 85 (117)
.|+|+||+.+|+++. ++|++++||.+||++|++ .+++| +++|||||+||.|+|+.+|++|+|.+++
T Consensus 105 eMqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~-----~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gs------ 170 (189)
T 3q3f_A 105 GGQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------ 170 (189)
T ss_dssp CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGCCEEETTEECCTTCBGGGGTCCTTC------
T ss_pred ceeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHh-----ccCCC--HHHEEEEECCEECCCCCCHHHCCCCCCC------
Confidence 489999999999976 999999999999999984 35777 5999999999999999999999999998
Q ss_pred EEEEEeccCCCCccC
Q 033522 86 TMHVVLRPSLPDKKG 100 (117)
Q Consensus 86 t~Hlv~~~~~~~~~~ 100 (117)
+|||+++..++.+..
T Consensus 171 tI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 171 TLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEECCCCCCCCCCC
T ss_pred EEEEEEEcCCCCcce
Confidence 999999999886543
No 60
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=3.1e-17 Score=110.19 Aligned_cols=82 Identities=7% Similarity=0.126 Sum_probs=70.2
Q ss_pred ceEEEEEEecCC----CeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCC-ccccccCCCCCC
Q 033522 5 DLIELKFRLADG----ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVE 79 (117)
Q Consensus 5 ~~~~i~~k~~~G----~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~ 79 (117)
..|+|+|++.+| +.+. ++|++++||++||++|++ .+++| +++|||+|.||.|+|+ .+|++|+|.+|+
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~-----~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g~ 77 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCEL-----ESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGD 77 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHH-----HTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTE
T ss_pred CeEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHH-----HHCcC--hHHeEEEECCEECCCCcccHHHCCCCCCC
Confidence 558999999765 5655 999999999999999984 45777 5999999999999887 699999999998
Q ss_pred CCCcceEEEEEeccCCCCccC
Q 033522 80 LPGTAITMHVVLRPSLPDKKG 100 (117)
Q Consensus 80 ~p~~~~t~Hlv~~~~~~~~~~ 100 (117)
++||+.+..++.+..
T Consensus 78 ------~l~l~~~~~gg~~~~ 92 (102)
T 1v5o_A 78 ------MVVLLQKDNVGLRTP 92 (102)
T ss_dssp ------EEEECBCCCCCCSSC
T ss_pred ------EEEEEECCCCCCCCC
Confidence 999999987776444
No 61
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=3.3e-17 Score=111.07 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=67.7
Q ss_pred ceEEEEEEecCC---CeeeeEEeCC---------CccHHHHHHHHHhhCCCcccCCCCCCcc-eeEEEcCeecCCCcccc
Q 033522 5 DLIELKFRLADG---ADIGPSKFSP---------TTTVASLKEKIISRWPKEKENGPKTVNN-VQLIHAGKILEDNMTIA 71 (117)
Q Consensus 5 ~~~~i~~k~~~G---~~~~~~~v~~---------~~tV~~lK~~I~~~wp~~~~~~p~~~~~-qrLI~~Gk~L~D~~tL~ 71 (117)
..|+|+||+.+| +.+. ++|++ ++||.+||++|+...|. ++| +++ |||||.||.|+|+.+|+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~---gip--~~~~qrLi~~Gk~L~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQE---SVP--DPELIDLIYCGRKLKDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCTT---TCC--CSSSEEEEETTEECCTTCBHH
T ss_pred CceEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhcc---CCC--hhhcEEEEECCeECCCCCcHH
Confidence 458999999998 6755 88554 59999999999965321 666 588 99999999999999999
Q ss_pred ccCCCCCCCCCcceEEEEEeccCCCC
Q 033522 72 ESRLPVVELPGTAITMHVVLRPSLPD 97 (117)
Q Consensus 72 ~~~i~~g~~p~~~~t~Hlv~~~~~~~ 97 (117)
+|+|.+|+ +|||+.+....+
T Consensus 85 ~y~i~~g~------~i~lv~~~~~~~ 104 (107)
T 1x1m_A 85 FYGIQPGS------TVHVLRKSWSGP 104 (107)
T ss_dssp HHTCCTTC------EEEEEESSCCSS
T ss_pred HcCCCCCC------EEEEEeCCCCCC
Confidence 99999998 999999876543
No 62
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=117.34 Aligned_cols=81 Identities=30% Similarity=0.399 Sum_probs=72.0
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
....|+|+||+.+|+++. +++++++||.+||++|++ .+++| +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 17 ~~~~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~-----~~gip--~~~QrL~~~g~~L~d~~tL~~~~i~~~~--- 85 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 85 (172)
T ss_dssp --CCEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCcC--hHHEEEEECCccccccCCHhHcCCcccc---
Confidence 347899999999999976 999999999999999984 45777 5999999999999999999999999998
Q ss_pred cceEEEEEeccCCCC
Q 033522 83 TAITMHVVLRPSLPD 97 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~~ 97 (117)
++||+++..++.
T Consensus 86 ---~l~l~~~~~gg~ 97 (172)
T 3u30_A 86 ---TLHLVLRLRGGM 97 (172)
T ss_dssp ---EEEEEECCCCCE
T ss_pred ---eeeeeecccccc
Confidence 999999987663
No 63
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.70 E-value=6.9e-17 Score=110.43 Aligned_cols=76 Identities=18% Similarity=0.115 Sum_probs=64.9
Q ss_pred eEEEEEEecCC--CeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCC-CCCCCCC
Q 033522 6 LIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPG 82 (117)
Q Consensus 6 ~~~i~~k~~~G--~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~p~ 82 (117)
.++|+|+.+.+ ..+. ++|+|++||.+||++|++ .+++| +++|||||+||.|+|++||++||| .+|+
T Consensus 24 ~l~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~~-----k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~--- 92 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVFL-----DYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGD--- 92 (105)
T ss_dssp EEEEEEEESSSCCEEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTC---
T ss_pred EEEEEEEccCCCCceEE-EEECCcChHHHHHHHHHH-----HhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCC---
Confidence 57788888875 4544 999999999999999984 46888 599999999999999999999999 5898
Q ss_pred cceEEEEEeccCC
Q 033522 83 TAITMHVVLRPSL 95 (117)
Q Consensus 83 ~~~t~Hlv~~~~~ 95 (117)
++||++-...
T Consensus 93 ---t~hL~l~~~~ 102 (105)
T 4dbg_A 93 ---SAYLYLLSAR 102 (105)
T ss_dssp ---EEEEEECCC-
T ss_pred ---EEEEEEEecc
Confidence 9999986543
No 64
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.70 E-value=1.6e-18 Score=125.11 Aligned_cols=79 Identities=32% Similarity=0.432 Sum_probs=0.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+|++.+|+++. ++|++++||.+||++|++ .+++| +++|||||+|+.|+|+.+|++|+|.+|+ +
T Consensus 1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gs------t 66 (152)
T 3u5c_f 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHH-----HhCCC--HHHEEEEECCEEccccCcHHHcCCCCCC------E
Confidence 57899999999876 999999999999999984 45777 5999999999999999999999999998 9
Q ss_pred EEEEeccCCCCcc
Q 033522 87 MHVVLRPSLPDKK 99 (117)
Q Consensus 87 ~Hlv~~~~~~~~~ 99 (117)
|||++++.++++.
T Consensus 67 L~Lvlrl~GGgKk 79 (152)
T 3u5c_f 67 LHLVLRLRGGGKK 79 (152)
T ss_dssp -------------
T ss_pred EEEEeeccCCCcC
Confidence 9999999999754
No 65
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.69 E-value=1.7e-18 Score=120.77 Aligned_cols=78 Identities=29% Similarity=0.385 Sum_probs=1.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+|++.+|+++. ++|++++||.+||++|++ .+++| +++|||+|.|+.|+|+.+|++|+|.+|+ +
T Consensus 1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gs------t 66 (128)
T 3u5e_m 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHH-----HhCcC--hHHEEEEECCEECCCCCchhhhccCCCC------E
Confidence 57899999999976 999999999999999984 45777 5999999999999999999999999998 9
Q ss_pred EEEEeccCCCCc
Q 033522 87 MHVVLRPSLPDK 98 (117)
Q Consensus 87 ~Hlv~~~~~~~~ 98 (117)
+||+++..++..
T Consensus 67 i~l~~rl~GG~~ 78 (128)
T 3u5e_m 67 LHLVLRLRGGII 78 (128)
T ss_dssp ----------CC
T ss_pred EEEEEEcCCCCC
Confidence 999999988864
No 66
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.68 E-value=2.1e-16 Score=110.48 Aligned_cols=78 Identities=29% Similarity=0.420 Sum_probs=69.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
+.++|+|++.+|+.+. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 75 ~~~~i~Vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 141 (152)
T 3b08_A 75 GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 141 (152)
T ss_dssp TCEEEEEEESSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred cccceeeeecCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCcC--hhhEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence 3578899999999876 9999999999999999854 5777 5999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
++||+++..++
T Consensus 142 -~i~l~~r~~GG 152 (152)
T 3b08_A 142 -TLHLVLRLRGG 152 (152)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 67
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=8.4e-17 Score=107.43 Aligned_cols=77 Identities=8% Similarity=0.108 Sum_probs=66.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
+.+.|+|+||. .|+.+.++++++++||.+||++|++ .+++| +++|||||.||.|+|+ +|++|+|.+|+
T Consensus 4 ~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~-----~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~--- 71 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFA-----LTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGM--- 71 (96)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHH-----HTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSC---
T ss_pred CCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHH-----HHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCC---
Confidence 45789999996 6777613999999999999999984 46787 5999999999999999 99999999998
Q ss_pred cceEEEEEeccC
Q 033522 83 TAITMHVVLRPS 94 (117)
Q Consensus 83 ~~~t~Hlv~~~~ 94 (117)
+|||+..+.
T Consensus 72 ---~i~l~~~~~ 80 (96)
T 1wgg_A 72 ---TVLMMGSAD 80 (96)
T ss_dssp ---EEECCCCCC
T ss_pred ---EEEEEecch
Confidence 999987665
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=115.73 Aligned_cols=78 Identities=29% Similarity=0.420 Sum_probs=66.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
+.+.|.|++.+|+++. +++++++||.+||++|+.. +++| +++|||+|.||.|+|+.+|++|+|.+|+
T Consensus 95 gg~~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~----- 161 (172)
T 3u30_A 95 GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 161 (172)
T ss_dssp CCEEEEEEESSCCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBSGGGTCCTTC-----
T ss_pred ccccceeecccCccee-EEecCCCCHHHHHHHHHHH-----hCCC--ceeEEEEECCccCCCCCcHHHhCCCCCC-----
Confidence 3577888999999976 9999999999999999844 5787 5999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
++||+++..++
T Consensus 162 -tl~l~~rlrgG 172 (172)
T 3u30_A 162 -TLHLVLRLRGG 172 (172)
T ss_dssp -EEEECC-----
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 69
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.7e-16 Score=103.23 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=66.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCC-----ccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCC-CccccccCCCC
Q 033522 4 EDLIELKFRLADGADIGPSKFSPT-----TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED-NMTIAESRLPV 77 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~-----~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D-~~tL~~~~i~~ 77 (117)
.+.|+|+|+. .|+.+. ++|+++ +||.+||++|++ ..++| +++|||||.||.|+| +.+|++|+|.+
T Consensus 5 ~~~~~v~Vk~-~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~-----~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEE-----VIGVP--QSFQKLIFKGKSLKEMETPLSALGIQD 75 (92)
T ss_dssp CSSEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHH-----HTCCC--TTTCEEEETTEEECCSSSBHHHHTCCS
T ss_pred CCeEEEEEEE-CCEEEE-EEECCCcCcccCcHHHHHHHHHH-----HHCcC--HHHEEEEECCeecCCCcccHHHCCCCC
Confidence 4679999998 577765 999995 999999999984 45777 599999999999998 66899999999
Q ss_pred CCCCCcceEEEEEeccCCC
Q 033522 78 VELPGTAITMHVVLRPSLP 96 (117)
Q Consensus 78 g~~p~~~~t~Hlv~~~~~~ 96 (117)
|+ +|||+..+..+
T Consensus 76 g~------~i~l~~~~~~~ 88 (92)
T 1wxv_A 76 GC------RVMLIGKKNSG 88 (92)
T ss_dssp SE------EEEEESCCSCS
T ss_pred CC------EEEEEecCCCC
Confidence 87 99998876654
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.67 E-value=2.4e-16 Score=112.13 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=67.2
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE-E-cCeecCCCccccccCCCCCCCCCc
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-H-AGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI-~-~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
.|+|+||+.+|+++. +++++++||++||++|++ ..++| +++|||+ | +|+.|+|+.+|++|+|.+|+
T Consensus 2 ~m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~-----~~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~---- 69 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQ-----KIGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPGS---- 69 (159)
T ss_dssp -CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHH-----HHCCC--GGGEEEEEETTCCBCCTTSCGGGGTCCTTC----
T ss_pred ceEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHH-----HhCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCCCCC----
Confidence 378999999999976 999999999999999984 45787 5999999 9 79999999999999999998
Q ss_pred ceEEEEEecc
Q 033522 84 AITMHVVLRP 93 (117)
Q Consensus 84 ~~t~Hlv~~~ 93 (117)
++||+++.
T Consensus 70 --~l~l~~~~ 77 (159)
T 3rt3_B 70 --TVLLVVDK 77 (159)
T ss_dssp --EEEEEECC
T ss_pred --EEEEEccC
Confidence 99999994
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.66 E-value=2.2e-16 Score=103.87 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=67.0
Q ss_pred CCceEEEEEEecCCCeeeeE-EeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE---EcCeecCCCccccccCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPS-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVV 78 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~-~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~g 78 (117)
+...|+|+||. .|+.+. + ++++++||.+||++|++ .+++| +++|||+ |.||+|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~Vk~-~g~~~~-i~~v~~~~TV~~lK~~I~~-----~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYS-VTTLSEDDTVLDLKQFLKT-----LTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPN 74 (90)
T ss_dssp CCCSCCEEEEE-TTEEEE-ECSCCSSSBHHHHHHHHHH-----HTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTT
T ss_pred CCceEEEEEEE-CCEEEE-EEEeCCCCCHHHHHHHHHH-----HHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCC
Confidence 34678899987 788765 9 99999999999999984 46787 5999999 99999999999999999999
Q ss_pred CCCCcceEEEEEeccC
Q 033522 79 ELPGTAITMHVVLRPS 94 (117)
Q Consensus 79 ~~p~~~~t~Hlv~~~~ 94 (117)
+ ++||+..+.
T Consensus 75 ~------~l~l~~~~~ 84 (90)
T 1v5t_A 75 T------KIMMMGTRE 84 (90)
T ss_dssp E------EEEEECCCS
T ss_pred C------EEEEEecCc
Confidence 8 999987654
No 72
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=3.3e-16 Score=102.12 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=60.6
Q ss_pred EEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEE
Q 033522 10 KFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHV 89 (117)
Q Consensus 10 ~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hl 89 (117)
.++..+|+.+. +++++++||.+||++|++ .+++| +++|||+|.||.|+|+.+|++|+|.+|+ ++||
T Consensus 15 ~~~~~~g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~l~l 80 (85)
T 2kd0_A 15 LTVKFGGKSIP-LSVSPDCTVKDLKSQLQP-----ITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGA------KLML 80 (85)
T ss_dssp EEEEETTEEEE-EEECTTSBHHHHHHHHHH-----HHCCC--TTTCEEEETTEECCTTCBTTTTTCCTTE------EEEE
T ss_pred EEEEECCEEEE-EEECCCCcHHHHHHHHHH-----HHCcC--hHHEEEEECCeECCCcCCHHHCCCCCCC------EEEE
Confidence 34455888876 999999999999999984 45777 5999999999999999999999999997 9999
Q ss_pred Eecc
Q 033522 90 VLRP 93 (117)
Q Consensus 90 v~~~ 93 (117)
+..+
T Consensus 81 ~~s~ 84 (85)
T 2kd0_A 81 MASQ 84 (85)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 8654
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.65 E-value=6.2e-16 Score=108.09 Aligned_cols=76 Identities=30% Similarity=0.450 Sum_probs=68.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+|++.+|+.+. +++++++||.+||++|++. .++| +++|||+|.|+.|+|+.+|++|+|.+|+ +
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gip--~~~q~L~~~g~~L~d~~tL~~~~i~~~~------~ 66 (152)
T 3b08_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (152)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCeECcCcccHHHhccCCCC------e
Confidence 57999999999876 9999999999999999844 5777 5999999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 033522 87 MHVVLRPSLP 96 (117)
Q Consensus 87 ~Hlv~~~~~~ 96 (117)
+|++.+..++
T Consensus 67 l~l~~~~~~~ 76 (152)
T 3b08_A 67 LHLVLRLRGG 76 (152)
T ss_dssp EEEEECCTTC
T ss_pred eEEEeecccc
Confidence 9999987665
No 74
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.64 E-value=3.7e-16 Score=126.24 Aligned_cols=85 Identities=26% Similarity=0.395 Sum_probs=72.2
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
+...|+|+||+.+|+++. ++|++++||.+||++|..+| +.+++| +++|||||.||+|+|+.+|++|+|.+++
T Consensus 4 ~~~~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~--~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs--- 75 (368)
T 1oqy_A 4 GSSAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEK--GRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN--- 75 (368)
T ss_dssp --CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHT--CSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS---
T ss_pred CCceEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHh--CcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC---
Confidence 346789999999999976 99999999999999999765 245677 5999999999999999999999999997
Q ss_pred cceEEEEEeccCCCC
Q 033522 83 TAITMHVVLRPSLPD 97 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~~ 97 (117)
+++||+.++.++.
T Consensus 76 --tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 --FVVVMVTKTKAGQ 88 (368)
T ss_dssp --CEEEEEECCCSSS
T ss_pred --EEEEEEecCCCCC
Confidence 3559998887654
No 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3.1e-16 Score=104.26 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=63.9
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
+..|+|+|+. .|+++. +++++++||.+||++|++ .+++| +++|||+|.||.|+| .+|++|+|.+++
T Consensus 15 ~~~~~i~Vk~-~g~~~~-i~v~~~~TV~~LK~~I~~-----~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~---- 80 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHS-----ITGLP--PAMQKVMYKGLVPED-KTLREIKVTSGA---- 80 (95)
T ss_dssp CCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHH-----HHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTE----
T ss_pred CceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHH-----HHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCC----
Confidence 3678999985 677765 999999999999999984 46787 599999999999955 499999999997
Q ss_pred ceEEEEEeccC
Q 033522 84 AITMHVVLRPS 94 (117)
Q Consensus 84 ~~t~Hlv~~~~ 94 (117)
+|||+....
T Consensus 81 --~i~lv~~~~ 89 (95)
T 1v86_A 81 --KIMVVGSTI 89 (95)
T ss_dssp --EEEECCSSC
T ss_pred --EEEEEeccc
Confidence 999987654
No 76
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=100.22 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=61.7
Q ss_pred eEEEEEEecCCCeee-eE-EeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc--CeecCCCccccccCCCCCCCC
Q 033522 6 LIELKFRLADGADIG-PS-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--GKILEDNMTIAESRLPVVELP 81 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~-~~-~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~--Gk~L~D~~tL~~~~i~~g~~p 81 (117)
.|+|+|++..|+.+. ++ +++|++||++||++|++. .+++| +++|||+|. ||+|+|+.||++|+|.+++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~----~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~s-- 81 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKT----HPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTA-- 81 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHH----CSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEE--
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHH----hcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCC--
Confidence 489999999988742 47 999999999999999853 34665 599999977 9999999999999999987
Q ss_pred CcceEEEE
Q 033522 82 GTAITMHV 89 (117)
Q Consensus 82 ~~~~t~Hl 89 (117)
++|+
T Consensus 82 ----tl~~ 85 (88)
T 2dzj_A 82 ----TLYF 85 (88)
T ss_dssp ----EEEE
T ss_pred ----EEEE
Confidence 7775
No 77
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.61 E-value=2.6e-15 Score=98.71 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=61.6
Q ss_pred EEEEEEec-CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE-------cCeecCCCccccccCCCCC
Q 033522 7 IELKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH-------AGKILEDNMTIAESRLPVV 78 (117)
Q Consensus 7 ~~i~~k~~-~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~-------~Gk~L~D~~tL~~~~i~~g 78 (117)
+.|.|... ++....+..|++++||++||++|+ +.+|+| +++||||| .|+.|+|+.+|++|+|.+|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~-----~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g 75 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVF-----THFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDE 75 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHH-----TTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTT
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHH-----HHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCC
Confidence 45566543 343434589999999999999998 567898 59999997 6999999999999999999
Q ss_pred CCCCcceEEEEEeccC
Q 033522 79 ELPGTAITMHVVLRPS 94 (117)
Q Consensus 79 ~~p~~~~t~Hlv~~~~ 94 (117)
. ++|||-..+
T Consensus 76 ~------~ihlvd~~P 85 (86)
T 4b6w_A 76 F------VIHVVDLQP 85 (86)
T ss_dssp C------EEEEEECCC
T ss_pred C------EEEEEeCCC
Confidence 8 999986543
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.61 E-value=3.3e-15 Score=99.92 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCceEEEEEEecCCC--eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc--Ce---ec-CCCccccccC
Q 033522 3 GEDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--GK---IL-EDNMTIAESR 74 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~--~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~--Gk---~L-~D~~tL~~~~ 74 (117)
..+.|+|.|+...++ .+ +++|++++||++||++|+ +.+++| +++|||+|. |+ .| +|+.+|++|+
T Consensus 12 ~~~~v~l~It~s~~~~~~~-~~~v~~~~TV~~LK~kI~-----~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAF-EVKLAKDLTVAQLKTKLE-----ILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp CCCEEEEEEEESSCSCEEE-EEEEETTCBHHHHHHHHH-----HHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHC
T ss_pred CCCeEEEEEEECCCCceEE-EEEeCccCHHHHHHHHHH-----HHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCC
Confidence 457899999987664 44 499999999999999998 557888 599999998 55 34 9999999999
Q ss_pred CCCCCCCCcceEEEEE
Q 033522 75 LPVVELPGTAITMHVV 90 (117)
Q Consensus 75 i~~g~~p~~~~t~Hlv 90 (117)
|.+|+ ++||+
T Consensus 84 i~~gs------tihlv 93 (95)
T 2kjr_A 84 NSDGL------RLHVV 93 (95)
T ss_dssp CSSSC------EEEEE
T ss_pred cCCCC------EEEEE
Confidence 99998 99987
No 79
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.60 E-value=6.2e-17 Score=120.63 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=1.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+|++++|+++. ++|++++||.+||++|+ +.+++| +++|||||+||+|+|+.||+ +++ |
T Consensus 1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI~-----~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~S------T 61 (189)
T 2xzm_9 1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQIS-----QDMGFE--IDMMTLVNNGFIAPNTELVT-----DDV------T 61 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEE-EEECCcChHHHHHHHHH-----HHhCcC--hhHEEEEecCeECCCCCccc-----CCC------E
Confidence 57999999999976 99999999999999997 556888 59999999999999999998 566 9
Q ss_pred EEEEeccCCCCc
Q 033522 87 MHVVLRPSLPDK 98 (117)
Q Consensus 87 ~Hlv~~~~~~~~ 98 (117)
|||++++.++.+
T Consensus 62 LhLvlRLrGG~~ 73 (189)
T 2xzm_9 62 YYLSLKLLGGKK 73 (189)
T ss_dssp ----------CC
T ss_pred EEEEEecCCCcc
Confidence 999999998864
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=3.4e-15 Score=100.35 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=64.1
Q ss_pred CCceEEEEEEecCCC--eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCe---e----cCCCcccccc
Q 033522 3 GEDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK---I----LEDNMTIAES 73 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~--~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk---~----L~D~~tL~~~ 73 (117)
+.+.+.|.|+....+ .+ +++|++++||++||++|+ +.+++| +++|||||.|+ . ++|+.+|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~-e~~v~~~~TV~~LK~kIe-----~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y 82 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSA-DARFSPQMSVEAVKEKLW-----KKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFF 82 (97)
T ss_dssp CCCCEEEEEEETTSSCCCE-EEEECTTCCHHHHHHHHH-----HHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHH
T ss_pred CCceEEEEEEECCCCceEE-EEEeCCCChHHHHHHHHH-----HHHCcC--HHHeEEEEecCCCcccceecCCcCCHHHC
Confidence 568899999886553 44 499999999999999998 557898 59999999984 3 5999999999
Q ss_pred CCCCCCCCCcceEEEEEe
Q 033522 74 RLPVVELPGTAITMHVVL 91 (117)
Q Consensus 74 ~i~~g~~p~~~~t~Hlv~ 91 (117)
+|.+|+ +|||+-
T Consensus 83 ~I~~g~------~Ihlvd 94 (97)
T 2kj6_A 83 SPFDGF------RLHIID 94 (97)
T ss_dssp CCCSCC------EEEEEE
T ss_pred CCCCCC------EEEEEe
Confidence 999998 999875
No 81
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.58 E-value=4.5e-15 Score=117.53 Aligned_cols=75 Identities=32% Similarity=0.477 Sum_probs=67.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+||+.+|+++. +++++++||++||++|++ .+++| +++|||+|.||.|+|+.+|++|+|.+++
T Consensus 232 ~~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~-----~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gs----- 298 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 298 (307)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCC-----
Confidence 6789999999999876 999999999999999984 45777 5999999999999999999999999998
Q ss_pred eEEEEEecc
Q 033522 85 ITMHVVLRP 93 (117)
Q Consensus 85 ~t~Hlv~~~ 93 (117)
+|||++++
T Consensus 299 -tL~LvlRL 306 (307)
T 3ai5_A 299 -TLHLVLRL 306 (307)
T ss_dssp -EEEEEC--
T ss_pred -EEEEEEeC
Confidence 99999875
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=101.02 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=65.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE--cCeecCCCccccccCCCCCCCCCcc
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~--~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
+.+..+..+|+++. +++++++||++||++|+ +.+++| |++|||+| .|+ |+|+.+|++|+|+.|+
T Consensus 9 m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I~-----~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gs----- 74 (100)
T 2dzm_A 9 MLDFRVEYRDRNVD-VVLEDTCTVGEIKQILE-----NELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNN----- 74 (100)
T ss_dssp EEEEEEECSSCEEE-EEEETTSBHHHHHHHHH-----HHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEE-----
T ss_pred eEEEEEEeCCeEEE-EEECCCCcHHHHHHHHH-----HHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCC-----
Confidence 55556666899876 99999999999999998 568898 58999997 677 9999999999999987
Q ss_pred eEEEEEeccCCCC
Q 033522 85 ITMHVVLRPSLPD 97 (117)
Q Consensus 85 ~t~Hlv~~~~~~~ 97 (117)
+||||+....+.
T Consensus 75 -tL~lvl~~~~~~ 86 (100)
T 2dzm_A 75 -SLYVLTPDLPPP 86 (100)
T ss_dssp -EEEECCSSSCCC
T ss_pred -EEEEEecCCCCC
Confidence 999999887743
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.5e-14 Score=96.55 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=72.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
.+.|+|+|+..+|+.+. |.|.+++++..|+++++ +..++| ++++||+|.|+.|++++|+++|++.+|+
T Consensus 5 ~~~i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~-----~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 72 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYC-----ERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 72 (94)
T ss_dssp -CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHH-----HHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTC----
T ss_pred CCeEEEEEECCCCCEEE-EEECCCCHHHHHHHHHH-----HHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 36799999999999877 99999999999999998 446776 5999999999999999999999999999
Q ss_pred ceEEEEEeccCCCC
Q 033522 84 AITMHVVLRPSLPD 97 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~ 97 (117)
+||++++..++.
T Consensus 73 --~Idv~~~~~GG~ 84 (94)
T 2io1_B 73 --TIDVFQQQTGGV 84 (94)
T ss_dssp --EEEEEECCEESC
T ss_pred --EEEEEEeccCCC
Confidence 999999987764
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.53 E-value=1.6e-14 Score=97.88 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=66.4
Q ss_pred CCceEEEEEEecCCCeeeeEEeC-CCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCe-----------e----cCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-----------I----LED 66 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~-~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk-----------~----L~D 66 (117)
+...|.|+||+.+|+. . ++++ +++||.+||++|+. ..++| +++|||+|.|+ . ++|
T Consensus 4 ~~~~M~irvrs~~G~~-~-v~v~~~~~Tv~~LK~kI~~-----~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d 74 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQD-----QLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADP 74 (107)
T ss_dssp SCCCEEEEEECSSCEE-E-EEECCTTSBHHHHHHHHHH-----HSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCT
T ss_pred CCCeEEEEEECCCCCE-E-EEECCCCCcHHHHHHHHHH-----HhCcC--cccCEEEECCccccccCccccccccccCCC
Confidence 3456999999999976 4 9999 99999999999984 45676 59999999998 4 589
Q ss_pred CccccccCCCCCCCCCcceEEEEEeccC
Q 033522 67 NMTIAESRLPVVELPGTAITMHVVLRPS 94 (117)
Q Consensus 67 ~~tL~~~~i~~g~~p~~~~t~Hlv~~~~ 94 (117)
+.+|++|+|.+|+ ++||+....
T Consensus 75 ~~tL~~~gi~~G~------~L~l~~~~~ 96 (107)
T 1wf9_A 75 NLRISSLNLAHGS------MVYLAYEGE 96 (107)
T ss_dssp TCBGGGTCCCTTC------EEECCCSSC
T ss_pred CCCHHHCCCCCCC------EEEEEeCCC
Confidence 9999999999999 999987754
No 85
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=9.1e-14 Score=92.33 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=72.6
Q ss_pred CCCCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCC
Q 033522 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (117)
Q Consensus 1 ~~~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (117)
|| .+.|+|+|+..+|+.+. |.|.++++++.|++.+++ ..++| ++++||+|.|+.|.+++|++++++.+|+
T Consensus 1 ~~-~~~i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~-----~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD- 70 (91)
T 2io0_B 1 MA-NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED- 70 (91)
T ss_dssp ----CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHH-----HTTCC--STTEEEEETTEECCTTCCTTTTTCCTTE-
T ss_pred CC-CCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHH-----HhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-
Confidence 44 36799999999999887 999999999999999984 45676 5999999999999999999999999999
Q ss_pred CCcceEEEEEeccCCCCc
Q 033522 81 PGTAITMHVVLRPSLPDK 98 (117)
Q Consensus 81 p~~~~t~Hlv~~~~~~~~ 98 (117)
+||++++..++..
T Consensus 71 -----~Idv~~~q~gg~~ 83 (91)
T 2io0_B 71 -----TIDVFQQQTGGVY 83 (91)
T ss_dssp -----EEEEEECCCCCCC
T ss_pred -----EEEEEEeccCCcc
Confidence 9999999887753
No 86
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=1e-13 Score=91.85 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=61.6
Q ss_pred ceEEEEEEecCCC-eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC---ee----cCCCccccccCCC
Q 033522 5 DLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---KI----LEDNMTIAESRLP 76 (117)
Q Consensus 5 ~~~~i~~k~~~G~-~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G---k~----L~D~~tL~~~~i~ 76 (117)
.+|.|+|+..... .+ +++|++++||++||++|+ +.+++| +++|||+|.| +. |+|+.+|++|+|.
T Consensus 6 ~~v~l~I~~~~~~~~~-~~~v~~~~TV~~lK~ki~-----~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRS-EKRYSRSLTIAEFKCKLE-----LVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp CCEEEEEEETTSSSCE-EEEECTTSBHHHHHHHHH-----HHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred cEEEEEEEECCCCeeE-EEEcCccCHHHHHHHHHH-----HHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence 4588888876553 34 499999999999999998 456887 5999999987 54 5899999999999
Q ss_pred CCCCCCcceEEEEEec
Q 033522 77 VVELPGTAITMHVVLR 92 (117)
Q Consensus 77 ~g~~p~~~~t~Hlv~~ 92 (117)
+|+ ++||+-.
T Consensus 78 ~g~------~l~v~d~ 87 (95)
T 1v6e_A 78 DGC------RIHVIDH 87 (95)
T ss_dssp TTC------EEEEBCC
T ss_pred CCC------EEEEEEC
Confidence 998 9998753
No 87
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.45 E-value=3.9e-13 Score=89.32 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=69.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
...|+|+|+..+|+.+. |.|.+++++..|++.+++ ..+++ ++++||+|.|+.|.+++|+++|++.+|+
T Consensus 15 ~~~i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~-----~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD---- 82 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 82 (93)
T ss_dssp CCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEEccCCHHHHHHHHHHH-----HhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 36899999999999877 999999999999999984 45676 5899999999999999999999999999
Q ss_pred ceEEEEEeccCCC
Q 033522 84 AITMHVVLRPSLP 96 (117)
Q Consensus 84 ~~t~Hlv~~~~~~ 96 (117)
+||++++..++
T Consensus 83 --~Idv~~~q~GG 93 (93)
T 2d07_B 83 --TIDVFQQQTGG 93 (93)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEeeccCC
Confidence 99999987653
No 88
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.45 E-value=4.7e-13 Score=92.61 Aligned_cols=76 Identities=11% Similarity=0.170 Sum_probs=62.5
Q ss_pred ceEEEEEEecCCC-eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC---ee----cCCCccccccCCC
Q 033522 5 DLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---KI----LEDNMTIAESRLP 76 (117)
Q Consensus 5 ~~~~i~~k~~~G~-~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G---k~----L~D~~tL~~~~i~ 76 (117)
+.|.|.|+...+. .+ +++|++++||++||++|+ ..+++| +++|||+|.| +. ++|+.+|++|+|.
T Consensus 5 ~~v~l~V~~~~~~~~~-e~~v~~~~TV~~lK~ki~-----~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~ 76 (122)
T 1t0y_A 5 EVYDLEITTNATDFPM-EKKYPAGMSLNDLKKKLE-----LVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR 76 (122)
T ss_dssp CEEEEEEEESSCCSCE-EEEEETTSBHHHHHHHHH-----HHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCC
T ss_pred CEEEEEEEECCCCccE-EEEeCCCCcHHHHHHHHH-----HHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCC
Confidence 3688888876553 33 499999999999999998 457888 5999999988 43 4899999999999
Q ss_pred CCCCCCcceEEEEEeccC
Q 033522 77 VVELPGTAITMHVVLRPS 94 (117)
Q Consensus 77 ~g~~p~~~~t~Hlv~~~~ 94 (117)
+|+ +|||+...+
T Consensus 77 ~g~------~ihvvd~~p 88 (122)
T 1t0y_A 77 DGY------RIHAVDVTG 88 (122)
T ss_dssp SSE------EEEEEECTT
T ss_pred CCC------EEEEEeCCC
Confidence 998 999986443
No 89
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=4.4e-13 Score=91.09 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=71.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
...|+|+|+..+|+.+. |.|.+++++..|++.+++ ..+++ ++++||+|.|+.|.+++|+++|++.+|+
T Consensus 22 ~~~I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~e-----k~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 89 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 89 (104)
T ss_dssp SCCEEEEEECSSSCEEE-EEECTTSCHHHHHHHHHH-----HHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEEcCCChHHHHHHHHHH-----HhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 36899999999999877 999999999999999984 45676 4899999999999999999999999999
Q ss_pred ceEEEEEeccCCCC
Q 033522 84 AITMHVVLRPSLPD 97 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~ 97 (117)
+||++++..++.
T Consensus 90 --~Idv~~~q~GG~ 101 (104)
T 1wz0_A 90 --TIDVFQQQTSGP 101 (104)
T ss_dssp --EEEECCCCCCCS
T ss_pred --EEEEEEeccCCC
Confidence 999998877664
No 90
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.43 E-value=1.4e-13 Score=109.12 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=64.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE---EcCeecCCCccccccCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++..|+|+|+. +|+.+. +++++++||++||++|+ +.+++| |++|||| |+||+|+|+.+|++|+|++|+
T Consensus 2 ~~~~i~i~Vk~-~g~~~~-v~v~~~~Tv~~lK~~I~-----~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~ 72 (320)
T 3shq_A 2 EVKEVVVIVKW-SGKEYP-VDLTDQDTVEVLRHEIF-----RKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNF 72 (320)
T ss_dssp --CEEEEEEEE-TTEEEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--C
T ss_pred CCceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHH-----HHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCC
Confidence 45779999996 788866 99999999999999998 457888 5999999 899999999999999999998
Q ss_pred CCCcceEEEEEeccCC
Q 033522 80 LPGTAITMHVVLRPSL 95 (117)
Q Consensus 80 ~p~~~~t~Hlv~~~~~ 95 (117)
++||+-.+..
T Consensus 73 ------~l~L~gs~~~ 82 (320)
T 3shq_A 73 ------KLMMVGSTEA 82 (320)
T ss_dssp ------EEEEECCCC-
T ss_pred ------EEEEEccchh
Confidence 9999865543
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.42 E-value=6.7e-13 Score=84.03 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=64.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+++..+|+.+. |.+.++++++.|++.+++ ..++| ++++||+|.|+.|.+++|++++++.+|+ +
T Consensus 2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~-----~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD------~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED------T 67 (72)
T ss_dssp EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHH-----HHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTE------E
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHH-----HhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC------E
Confidence 78999999999877 999999999999999984 45776 5999999999999999999999999999 9
Q ss_pred EEEEe
Q 033522 87 MHVVL 91 (117)
Q Consensus 87 ~Hlv~ 91 (117)
||+.+
T Consensus 68 Idv~~ 72 (72)
T 1wm3_A 68 IDVFQ 72 (72)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99863
No 92
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.40 E-value=1.6e-12 Score=83.91 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=66.7
Q ss_pred CCCceEEEEEEecCCC-eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCC
Q 033522 2 AGEDLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (117)
Q Consensus 2 ~~~~~~~i~~k~~~G~-~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (117)
++.+.|+|+++..+|+ .+. |.|.+++++..|++.+++ ..+++ ++++||+|.|+.|.+++|++++++.+|+
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~-----~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD- 73 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEE-----AMGLS--GHKLSFFFDGTKLSGKELPADLGLESGD- 73 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHH-----HHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTC-
T ss_pred CCCCEEEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHH-----HhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-
Confidence 3567899999999996 776 999999999999999984 45676 5899999999999999999999999999
Q ss_pred CCcceEEEEE
Q 033522 81 PGTAITMHVV 90 (117)
Q Consensus 81 p~~~~t~Hlv 90 (117)
+||+.
T Consensus 74 -----~Idv~ 78 (79)
T 3a4r_A 74 -----LIEVW 78 (79)
T ss_dssp -----EEEEE
T ss_pred -----EEEEe
Confidence 99974
No 93
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.39 E-value=3.9e-13 Score=87.38 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=60.7
Q ss_pred EEEEEEecCCCeeeeEE-eCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC--eecC---CCccccccCCCCCCC
Q 033522 7 IELKFRLADGADIGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILE---DNMTIAESRLPVVEL 80 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~-v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~---D~~tL~~~~i~~g~~ 80 (117)
|+|+||+.+|+. . ++ |++++||.+||++|+++ .++| +++|||+|.+ |.|+ |+.+|++|||..|+
T Consensus 1 m~i~vr~~~G~~-~-v~~l~~~~Tv~~Lk~~I~~~-----~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~- 70 (86)
T 2kzr_A 1 WRVRCKAKGGTH-L-LQGLSSRTRLRELQGQIAAI-----TGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGD- 70 (86)
T ss_dssp CCEEEEETTEEE-E-ECSCCTTCBHHHHHHHHHHH-----TCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC-
T ss_pred CEEEEEcCCCCE-E-eeecCCCCCHHHHHHHHHHH-----hCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCC-
Confidence 578999999975 3 77 99999999999999854 5676 5899999974 8874 78999999999998
Q ss_pred CCcceEEEEEecc
Q 033522 81 PGTAITMHVVLRP 93 (117)
Q Consensus 81 p~~~~t~Hlv~~~ 93 (117)
++||.-..
T Consensus 71 -----~l~v~~~~ 78 (86)
T 2kzr_A 71 -----MLIVEEDQ 78 (86)
T ss_dssp -----EEECCCCS
T ss_pred -----EEEEEeCC
Confidence 99987654
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.38 E-value=1.7e-12 Score=88.63 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=68.1
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
.+.|+|+|+. +|+.+. |.|.+++++..|++.+++ ..+++ ++++||+|.|+.|.+++|++++++.+|+
T Consensus 29 ~~~I~IkV~~-~g~~i~-fkIk~tt~l~kL~~ay~e-----k~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD---- 95 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 95 (106)
T ss_dssp CSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEec-CCcEEE-EEeCCCCHHHHHHHHHHH-----HhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCC----
Confidence 3679999999 999987 999999999999999984 45676 5899999999999999999999999999
Q ss_pred ceEEEEEeccCCC
Q 033522 84 AITMHVVLRPSLP 96 (117)
Q Consensus 84 ~~t~Hlv~~~~~~ 96 (117)
+||++++..++
T Consensus 96 --~Idv~~~q~GG 106 (106)
T 2eke_C 96 --IIEAHREQIGG 106 (106)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEeecccC
Confidence 99999987653
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.38 E-value=9.3e-13 Score=90.40 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=70.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+|+..+|+.+. |.|.+++++..|++.+++ ..+++ ++++||+|.|+.|.+++|+++|++.+|+
T Consensus 25 ~~I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~e-----k~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD----- 91 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMF-FRIKSRTALKKLIDTYCK-----KQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDD----- 91 (110)
T ss_dssp CCEEEEEEETTSCCEE-EEECTTSSHHHHHHHHHH-----HHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEE-----
T ss_pred CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHH-----HhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence 5799999999999887 999999999999999984 45776 4899999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
+||++++..++
T Consensus 92 -~Idv~~~q~Gg 102 (110)
T 2k8h_A 92 -VIDAMVEQTGG 102 (110)
T ss_dssp -EEEEECCCCCC
T ss_pred -EEEEEEcccCc
Confidence 99999987764
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.10 E-value=1.3e-09 Score=72.08 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=60.5
Q ss_pred ceEEEEEEe---cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC------ee-c-CCCcccccc
Q 033522 5 DLIELKFRL---ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG------KI-L-EDNMTIAES 73 (117)
Q Consensus 5 ~~~~i~~k~---~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G------k~-L-~D~~tL~~~ 73 (117)
+-++|+|+. .+|..+. ..|++++||.+||++|+. ..++| ++.|||.|.+ .. | +|..+|+.|
T Consensus 8 ~~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~-----~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y 79 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSR-----LLKVP--VSELLLSYESSKMPGREIELENDLQPLQFY 79 (97)
T ss_dssp CEEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHT-----TTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGG
T ss_pred ccEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHH-----HHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhc
Confidence 568888876 3566654 999999999999999984 45777 4999999873 22 4 789999999
Q ss_pred CCCCCCCCCcceEEEEEecc
Q 033522 74 RLPVVELPGTAITMHVVLRP 93 (117)
Q Consensus 74 ~i~~g~~p~~~~t~Hlv~~~ 93 (117)
++.+|+ +|||+...
T Consensus 80 ~i~~G~------~I~V~d~~ 93 (97)
T 1wjn_A 80 SVENGD------CLLVRWSG 93 (97)
T ss_dssp TCCTTC------EEEEECCS
T ss_pred CCCCCC------EEEEEecC
Confidence 999999 99987743
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=8.5e-10 Score=76.26 Aligned_cols=77 Identities=26% Similarity=0.342 Sum_probs=68.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
.+.|+|+|+..+|+.+. |.|.+++++..|++..+++ .+++ ++++||+|.|+.|.+++|.+++++.+|+
T Consensus 38 ~~~I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er-----~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD---- 105 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED---- 105 (115)
T ss_dssp -CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--TTSEEEEETTEECCTTCCTTTTTCCTTC----
T ss_pred CCeEEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHH-----hCCC--hhhEEEEECCeECCCCCCHHHcCCCCCC----
Confidence 47899999999999887 9999999999999999844 4665 5999999999999999999999999999
Q ss_pred ceEEEEEeccC
Q 033522 84 AITMHVVLRPS 94 (117)
Q Consensus 84 ~~t~Hlv~~~~ 94 (117)
+|+++++..
T Consensus 106 --~IdV~~~Q~ 114 (115)
T 3kyd_D 106 --VIEVYQEQC 114 (115)
T ss_dssp --EEEEEECCC
T ss_pred --EEEEEeecc
Confidence 999887643
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1e-09 Score=82.29 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=72.7
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
++-|+|+|+. +|+.+. |.+.+++++..|++..+ ++.+++ ++++||+|.|+.|.+++|.+++++.+|+
T Consensus 27 ~~~I~LkV~~-~g~~v~-fkIk~~t~l~kL~~ay~-----er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD---- 93 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 93 (200)
T ss_dssp CCCEEEEEEC-SSCEEE-EEECTTSCTHHHHHHHH-----HHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEec-CCCEEE-EEEecCCHHHHHHHHHH-----HHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 4568999974 898877 99999999999999998 456776 5999999999999999999999999999
Q ss_pred ceEEEEEeccCCCCccC
Q 033522 84 AITMHVVLRPSLPDKKG 100 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~~~~ 100 (117)
+||++++..++.+++
T Consensus 94 --~Idv~~~q~gg~kd~ 108 (200)
T 3pge_A 94 --IIEAHREQIGGGGET 108 (200)
T ss_dssp --EEEEEECCSCCC-CC
T ss_pred --EEEEEeccCcCcCce
Confidence 999999999988665
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.86 E-value=6.5e-09 Score=77.87 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=70.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
.+.|+|+|+. +|+.+. |.|.+++++..|++..++ ..+++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 55 ~e~InLKVk~-dG~eV~-FKIKrtTpL~KLmeAYcE-----RqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGD---- 121 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDND---- 121 (207)
T ss_dssp CCEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHH-----HTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTE----
T ss_pred CCcEEEEEec-CCCEEE-EEEccCChHHHHHHHHHH-----HhCCC--cccEEEEECCeecCCCCCHHHcCCCCCC----
Confidence 3568999974 888877 999999999999999984 45666 5999999999999999999999999999
Q ss_pred ceEEEEEeccCCCCc
Q 033522 84 AITMHVVLRPSLPDK 98 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~~ 98 (117)
+|+++++..++..
T Consensus 122 --tIDV~leQ~GG~~ 134 (207)
T 3tix_A 122 --IIEAHREQIGGLP 134 (207)
T ss_dssp --EEEECCCCCTTGG
T ss_pred --EEEEEEeccCCCc
Confidence 9999999888764
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.58 E-value=7e-09 Score=78.62 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=1.3
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
.+-|+|+| .-+|+.+. |.|.+++....|++..+ ++.+++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 19 ~e~InLKV-~qdGseV~-FKIKrtTpL~KLM~AYc-----ERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGD---- 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEEE-EEEccCChHHHHHHHHH-----HHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence 46788999 66888877 99999999999999997 455765 5999999999999999999999999999
Q ss_pred ceEEEEEeccCCCC
Q 033522 84 AITMHVVLRPSLPD 97 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~ 97 (117)
+|+++++..++.
T Consensus 86 --tIDV~leQ~GG~ 97 (227)
T 3v7o_A 86 --IIEAHREQIGGL 97 (227)
T ss_dssp ------------CC
T ss_pred --EEEEEecccCCc
Confidence 999998888875
No 101
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.37 E-value=3.4e-06 Score=54.72 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=61.1
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
.-|.+-+|......+. |.+.++++|.+|=...... .+||. ...+||.|-|..|+.+.++.+|.+.+|+
T Consensus 8 ~~~~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~-----~~I~~-~~~IrllFDGdRLdp~~tp~DlemeD~D----- 75 (82)
T 3goe_A 8 KLITLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTE-----VKISF-HERIRLEFEGEWLDPNDQVQSTELEDED----- 75 (82)
T ss_dssp CEEEEEEEESSSCCEE-EEEETTSBHHHHHHHHHHH-----HTCCC-CTTCEEEETTEECCTTSBGGGSSCCTTC-----
T ss_pred HHHHHhhhccCCCCeE-EEecCCCCHHHHHHHHHHH-----cCCCc-CceEEEEEcCcccCccCChhhhCCcCCc-----
Confidence 3467777887777777 9999999999998887743 46764 2399999999999999999999999999
Q ss_pred eEEEEEe
Q 033522 85 ITMHVVL 91 (117)
Q Consensus 85 ~t~Hlv~ 91 (117)
.|-+++
T Consensus 76 -~IDvmL 81 (82)
T 3goe_A 76 -QVSVVL 81 (82)
T ss_dssp -EEEEEC
T ss_pred -eeeeee
Confidence 776654
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.36 E-value=1.5e-06 Score=64.72 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
..+.|+|+++. +|+.+. |.+..++...-|++..+ ++.+++ ++++||+|.|+.+.+++|..++.+.+++
T Consensus 18 ~~~~i~ikv~~-~~~~v~-~~i~~~~~l~kl~~~y~-----~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d--- 85 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND--- 85 (209)
T ss_dssp CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHH-----HHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTE---
T ss_pred CCCcEEEEEEc-CCCEEE-EEEeeCCHHHHHHHHHH-----HhhCCC--hheEEEEECCEeccCCCChHHhhhcccc---
Confidence 35789999987 777777 99999999999999998 456776 5999999999999999999999999998
Q ss_pred cceEEEEEeccCCCC
Q 033522 83 TAITMHVVLRPSLPD 97 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~~ 97 (117)
+|++..+..++.
T Consensus 86 ---~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 86 ---IIEAHREQIGGS 97 (209)
T ss_dssp ---EEEEECSCTTCC
T ss_pred ---cchhhccccccc
Confidence 999888877754
No 103
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.34 E-value=1.2e-06 Score=58.49 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=40.9
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCC
Q 033522 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLP 76 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~ 76 (117)
.++..+. +.+.+++||..+|++|+ +.+++| +++|||||.||.|.=+......+++
T Consensus 21 ~~a~~h~-v~I~~~etv~~~ke~V~-----eqTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 21 QQMTAHK-IYIHSYNTATIFHELVY-----KQTKII--SSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp TTTEEEE-EEEETTCBHHHHHHHHH-----HHHCCC--GGGEEEEETTEEECCCTTCBGGGSC
T ss_pred ccceEEE-EEeccchHHHHHHHHHH-----HHhCCC--HHHHHHHhCCCccccCCCCccccCC
Confidence 3555544 99999999999999998 457898 5899999999987533333333444
No 104
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.30 E-value=3.6e-07 Score=58.84 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=51.0
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCee-----cCCCccccccCCCCCCC
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI-----LEDNMTIAESRLPVVEL 80 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~-----L~D~~tL~~~~i~~g~~ 80 (117)
.|.|+||..+|.. . +++++++|+.+|+++|++.. +++. +.+.|.++-.. +.++.+|+++||..|+
T Consensus 4 ~m~lRvrs~~G~~-R-i~v~~~~t~~~L~~~I~~~~-----~i~~--~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd- 73 (80)
T 2pjh_A 4 SIIIRVQSPDGVK-R-ITATKRETAATFLKKVAKEF-----GFQN--NGFSVYINRNKTGEITASSSKSLHLLKIKHGD- 73 (80)
T ss_dssp CCCCEEECSSEEE-E-CCCCSSCCHHHHHHHHHHHT-----CCCT--TTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC-
T ss_pred cEEEEEECCCCCE-E-EEcCCcChHHHHHHHHHHHc-----CCCC--CcceEEecCCCCCcccCCCCCCHHHcCCCCCC-
Confidence 4789999999955 4 88999999999999998653 3432 34333332222 3478899999999999
Q ss_pred CCcceEEEEE
Q 033522 81 PGTAITMHVV 90 (117)
Q Consensus 81 p~~~~t~Hlv 90 (117)
++++.
T Consensus 74 -----~l~l~ 78 (80)
T 2pjh_A 74 -----LLFLF 78 (80)
T ss_dssp -----CEEC-
T ss_pred -----EEEEe
Confidence 77653
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.28 E-value=8e-08 Score=77.45 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=1.7
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
....|+|+++. +|+.+. |.+..+++...|++..+ ++.+++ ++++|++|.|+.|.+++|.+++++.+|+
T Consensus 18 ~~~~I~LKV~~-~g~~v~-FkIk~~t~l~kLm~aY~-----~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD--- 85 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND--- 85 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEE-EEEecCChHHHHHHHHH-----HHhCCC--cceEEEEECCeECCCCCChHHcCCCccc---
Confidence 34678888887 677766 99999999999999997 445665 5999999999999999999999999999
Q ss_pred cceEEEEEeccCCCCcc
Q 033522 83 TAITMHVVLRPSLPDKK 99 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~~~~ 99 (117)
+|+++++..++++.
T Consensus 86 ---~Idv~~~Q~g~~~~ 99 (360)
T 3ix6_A 86 ---IIEAHREQIGGMRT 99 (360)
T ss_dssp --------------CHH
T ss_pred ---hhhhhhccCchHHH
Confidence 99999998888754
No 106
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.24 E-value=7.5e-06 Score=54.71 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=59.8
Q ss_pred CCceEEEEEEecCCC-eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033522 3 GEDLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~-~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
+.+.|+|+++..+|+ .+. |.+..++...-|.+..+++ .+++ ++.+||+|.|..|..++|.+++++.+|+
T Consensus 22 ~~~~I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~-----~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEA-----MGLS--GRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp SCSEEEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHH-----TTCS--SSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCCeEEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 347899999998995 666 9999999999999998754 3454 5899999999999999999999999998
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.93 E-value=1.3e-06 Score=69.94 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
.+.|+|+++. +|..+. |.+..+++...|++..++ ..+++ +.++||+|.|+.|.+++|.+++++.+|+
T Consensus 28 ~~~i~lkv~~-~~~~~~-~~i~~~~~~~~l~~~y~~-----~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d---- 94 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDND---- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEE-EEECCCChHHHHHHHHHH-----HhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 3568888887 777766 999999999999999974 45665 5999999999999999999999999999
Q ss_pred ceEEEEEeccCCCC
Q 033522 84 AITMHVVLRPSLPD 97 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~ 97 (117)
+|++++...++.
T Consensus 95 --~i~~~~~q~gg~ 106 (389)
T 4da1_A 95 --IIEAHREQIGGE 106 (389)
T ss_dssp --------------
T ss_pred --Eeeeeecccccc
Confidence 999888777665
No 108
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.78 E-value=0.00015 Score=48.33 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=61.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..|+|+|+. .|..+. |.+-.++..+-|.+..+++ .+.. ++.+|++|.|..+.++.|.+++++.+|+
T Consensus 20 ~~IniKV~~-~g~ev~-FkIK~tt~l~KL~~aYc~r-----~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~D----- 85 (95)
T 2l76_A 20 RLFPLKIRC-RADLVR-LPLRMSEPLQSVVDHMATH-----LGVS--PSRILLLFGETELSPTATPRTLKLGVAD----- 85 (95)
T ss_dssp CCEEEEEEC-SSSEEE-EEECSSSCTHHHHHHHHHH-----HTSC--GGGEEEEETTEECCTTSCHHHHTCCSSC-----
T ss_pred CeEEEEEEc-CCcEEE-EEEecCChHHHHHHHHHhh-----cCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCC-----
Confidence 559999995 677777 9999999999998888743 4554 6999999999999999999999999999
Q ss_pred eEEEEEe
Q 033522 85 ITMHVVL 91 (117)
Q Consensus 85 ~t~Hlv~ 91 (117)
+|-+++
T Consensus 86 -iID~~~ 91 (95)
T 2l76_A 86 -IIDCVV 91 (95)
T ss_dssp -EEEEEE
T ss_pred -EEEEEE
Confidence 776654
No 109
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.78 E-value=0.00017 Score=46.11 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=56.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeec---CCCccccccCCCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKIL---EDNMTIAESRLPV 77 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~~ 77 (117)
.++..+|.||+.+|+.+. -.|..++||.+|.+.|... +. ++...+|+ |-.|.| +.+.||.++|+..
T Consensus 4 ~~~~~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~~------~~--~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p 74 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVASK------GF--PWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP 74 (84)
T ss_dssp CCCEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHT------TC--CTTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred CCCeEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHc------CC--CCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence 457789999999999876 8999999999999999753 12 24677887 346778 4578999999997
Q ss_pred CCCCCcceEEEEE
Q 033522 78 VELPGTAITMHVV 90 (117)
Q Consensus 78 g~~p~~~~t~Hlv 90 (117)
++ +++|-
T Consensus 75 ~a------~L~ve 81 (84)
T 3qx1_A 75 QE------TLFLE 81 (84)
T ss_dssp EE------EEEEE
T ss_pred CC------EEEEE
Confidence 65 66653
No 110
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.30 E-value=0.0017 Score=44.70 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=53.1
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeec--CC-CccccccCCCCC
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKIL--ED-NMTIAESRLPVV 78 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L--~D-~~tL~~~~i~~g 78 (117)
.+..+|.||+.+|..+. -.|..++||.+|.+.|... +.+ +...+|+ |=.|.| +| +.||.++|+...
T Consensus 41 ~~~t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~------~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQ 111 (124)
T ss_dssp SCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH------HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSS
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc------CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCc
Confidence 46799999999999876 8999999999999999754 222 2556666 447778 34 899999999875
Q ss_pred C
Q 033522 79 E 79 (117)
Q Consensus 79 ~ 79 (117)
.
T Consensus 112 a 112 (124)
T 1wj4_A 112 E 112 (124)
T ss_dssp B
T ss_pred e
Confidence 5
No 111
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.27 E-value=0.0012 Score=42.65 Aligned_cols=72 Identities=10% Similarity=0.210 Sum_probs=56.5
Q ss_pred ceEEEEEEe--cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033522 5 DLIELKFRL--ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 5 ~~~~i~~k~--~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
.-|+|+|.+ -.|+.+- +.++-..||+.|++.+++...-+ ..+.+--++|+.-.|.+|.+.++|++|+|.+|+
T Consensus 3 ~yI~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~--~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVS--MPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp CEEEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCC--SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred cEEEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCC--cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 346777776 4777765 99999999999999998664222 112221489999999999999999999999998
No 112
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.22 E-value=0.0032 Score=49.62 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=51.6
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE------cCeecCCCccccccCCCCCC
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH------AGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~------~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++.|+|..+ +..+++.|+|++||.++...|.++.|.... . +.+.=-|.- .|+.|++..||+.|++.+++
T Consensus 3 ~~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~-~--~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~ 77 (371)
T 3ivf_A 3 ALSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALA-G--PPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGD 77 (371)
T ss_dssp CEEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGS-S--CGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTC
T ss_pred cEEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccC-C--CHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCc
Confidence 578888887 444679999999999999999988764210 0 123333333 47899999999999999887
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.21 E-value=0.0018 Score=43.45 Aligned_cols=76 Identities=13% Similarity=0.268 Sum_probs=56.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeecC--C-CccccccCCCCC
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE--D-NMTIAESRLPVV 78 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~--D-~~tL~~~~i~~g 78 (117)
.+..+|.||+.+|..+. -.|..++||.+|.+.|.... +.+ .....|+ |--|.|. | ++||+|+|+...
T Consensus 11 ~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~-----~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTV-----GNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPS 82 (109)
T ss_dssp SCCEEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHH-----TTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhcc-----CCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence 36789999999999876 89999999999999998652 121 2445555 3456675 3 789999999975
Q ss_pred CCCCcceEEEEEecc
Q 033522 79 ELPGTAITMHVVLRP 93 (117)
Q Consensus 79 ~~p~~~~t~Hlv~~~ 93 (117)
. ++++....
T Consensus 83 a------~L~v~~~~ 91 (109)
T 2dzk_A 83 A------SVVLLPAG 91 (109)
T ss_dssp E------EEEEECCS
T ss_pred e------EEEEEECc
Confidence 4 77765543
No 114
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.02 E-value=0.0032 Score=43.36 Aligned_cols=68 Identities=26% Similarity=0.407 Sum_probs=52.7
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeecCC-CccccccCCCCC
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED-NMTIAESRLPVV 78 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~D-~~tL~~~~i~~g 78 (117)
....+|.||+.+|..+. -.|..++||.+|.+.|....|. .. .....|+ |-.|.|+| +.||.|+|+...
T Consensus 50 ~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~----~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPA----MA--ATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp SCCCCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSG----GG--TSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcC----CC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 35688999999999876 8999999999999999865431 11 2456665 34677865 799999999864
No 115
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.95 E-value=0.0012 Score=46.07 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=50.8
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCC---------------------------------C--
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKT---------------------------------V-- 52 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~---------------------------------~-- 52 (117)
.|+|++.+|.... +.|+++.+|.+++..|..+- +++.. -
T Consensus 13 ~LkV~llDg~~kt-l~VD~S~~V~~lv~~Ic~ki-----gI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 86 (128)
T 2kc2_A 13 PLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARI-----GITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEK 86 (128)
T ss_dssp EEEEECTTSCEEE-EEEEECSSHHHHHHHHHHHH-----TCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCS
T ss_pred cEEEEcCCCCEEE-EEeCCCcCHHHHHHHHHHHh-----CCCCcccccccccccccccccCchhhccccccccchhHHHH
Confidence 4899999998855 99999999999999999652 23211 0
Q ss_pred cceeEEE--cCeecCCCccccccCCCCCC
Q 033522 53 NNVQLIH--AGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 53 ~~qrLI~--~Gk~L~D~~tL~~~~i~~g~ 79 (117)
..+||-. .+.+|+++.||.+.||.+++
T Consensus 87 ~k~kL~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 87 LKQKLHTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp SCCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred HHHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence 1455522 35799999999999999998
No 116
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.88 E-value=0.0083 Score=40.09 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=56.1
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE--cCeecC--CCccccccCCCCCC
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGKILE--DNMTIAESRLPVVE 79 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~--~Gk~L~--D~~tL~~~~i~~g~ 79 (117)
.+..+|.||+.+|+.+. -.|..++||.+|.+.|..+ +. .+...+|+- =.|.|. .+.||+++||....
T Consensus 21 ~~~~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~------~~--~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a 91 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV------GY--HKSLYRLSTSFPRRALEVEGGSSLEDIGITVDT 91 (109)
T ss_dssp SSEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH------TC--CTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCE
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc------CC--CCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCe
Confidence 36799999999999876 8999999999999999854 11 135666753 466775 48999999999764
Q ss_pred CCCcceEEEEEe
Q 033522 80 LPGTAITMHVVL 91 (117)
Q Consensus 80 ~p~~~~t~Hlv~ 91 (117)
+++|..
T Consensus 92 ------~L~Ve~ 97 (109)
T 2cr5_A 92 ------VLNVEE 97 (109)
T ss_dssp ------EEEEEE
T ss_pred ------EEEEEe
Confidence 776543
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.50 E-value=0.013 Score=39.98 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=49.8
Q ss_pred ceEEEEEEecC--CCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCC----CCcceeEEE----cCeecCCCc------
Q 033522 5 DLIELKFRLAD--GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK----TVNNVQLIH----AGKILEDNM------ 68 (117)
Q Consensus 5 ~~~~i~~k~~~--G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~----~~~~qrLI~----~Gk~L~D~~------ 68 (117)
..+.|.+.... +..+ ++.+=.-+||.++|+||.... +.+.|. +++++.|=+ .|++|.|.+
T Consensus 10 ~~ltl~v~~~~~~~~~i-~vkVLdCDTItQvKeKiLd~v---yk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~ 85 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAI-PVKVLNCDTISQVKEKIIDQV---YRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQRE 85 (111)
T ss_dssp CEEEEEEEETTSCCCCE-EEEEETTCBHHHHHHHHHHHH---TC---------CCSEEEEEC--CCCEECCSSCTTSCC-
T ss_pred EEEEEEEEecCCCCCce-eeeeeccCcHHHHHHHHHHHH---HcCCccccCCCCCceeeEEecCCCCccccccCccceec
Confidence 34566665443 3333 377778899999999998652 223332 367888866 356787633
Q ss_pred -------cccccCCCCCCCCCcceEEEEEec
Q 033522 69 -------TIAESRLPVVELPGTAITMHVVLR 92 (117)
Q Consensus 69 -------tL~~~~i~~g~~p~~~~t~Hlv~~ 92 (117)
||+.|+|++|+ +|-|+.+
T Consensus 86 ~~wkrLNTL~HY~V~dga------tl~l~~~ 110 (111)
T 4e71_A 86 GRWKRVNTLMHYNVRDGA------TLILSKV 110 (111)
T ss_dssp --CCCCCBHHHHTCCTTC------EEEEEEC
T ss_pred CcceEecchhhcCCCCCC------EEEEEeC
Confidence 48889999998 7766543
No 118
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=96.13 E-value=0.057 Score=37.54 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=45.5
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCc--ccCCCCCCcceeEEE-cCe----ecCCCc-------------cccccCCCCCCC
Q 033522 21 PSKFSPTTTVASLKEKIISRWPKE--KENGPKTVNNVQLIH-AGK----ILEDNM-------------TIAESRLPVVEL 80 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~--~~~~p~~~~~qrLI~-~Gk----~L~D~~-------------tL~~~~i~~g~~ 80 (117)
++.+=.-+||.++|++|....=.+ +...| .++++.|=+ .|+ +|.|.+ ||+.|+|++|.
T Consensus 20 ~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dga- 97 (127)
T 3h6n_A 20 SVRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGA- 97 (127)
T ss_dssp EEEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTC-
T ss_pred eeeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCC-
Confidence 377778899999999998653111 11234 378888976 343 476632 38889999998
Q ss_pred CCcceEEEEEeccC
Q 033522 81 PGTAITMHVVLRPS 94 (117)
Q Consensus 81 p~~~~t~Hlv~~~~ 94 (117)
+|-|+.+..
T Consensus 98 -----tv~l~~~~~ 106 (127)
T 3h6n_A 98 -----SLAMSLIDK 106 (127)
T ss_dssp -----EEEEEECC-
T ss_pred -----EEEEEEccc
Confidence 887776543
No 119
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.05 E-value=0.033 Score=36.58 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=61.6
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
..+.|.|...+|.... +.+.|++++.+|=+.-..+ .++ ++++-.|-|.+|.|+=+..+.-.||+.|.
T Consensus 8 ~~m~v~Vl~~n~rr~~-VKvtp~t~L~~VL~eaC~K-----~gl--~~~~~~Lkh~~k~lDLSlpfRlsgLpnnA----- 74 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRR-----QDF--NPSEYDLKFQRTVLDLSLQWRFANLPNNA----- 74 (90)
T ss_dssp --CCEEEECTTSCEEE-ECCCTTSBHHHHHHHHHHH-----TTC--CGGGCEEEETTEEESSSCBHHHHCCCSSC-----
T ss_pred CccEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHH-----hCC--ChhhCeEEeCCEeccccceeEecCCCCCC-----
Confidence 4458899999998866 9999999999975555433 244 35788999999999989999999999998
Q ss_pred eEEEEEeccCCC
Q 033522 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
.+-|+.....+
T Consensus 75 -kLELv~~s~s~ 85 (90)
T 2al3_A 75 -KLEMVPVSRSR 85 (90)
T ss_dssp -EEEEECSSSCC
T ss_pred -EEEEEEccCCC
Confidence 88887766544
No 120
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.60 E-value=0.11 Score=36.63 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=51.2
Q ss_pred ceEEEEEEecCC------CeeeeEEeCCCccHHHHHHHHHhhC--CCcccCCCCCCcceeEEE----cCe-ecCCCc---
Q 033522 5 DLIELKFRLADG------ADIGPSKFSPTTTVASLKEKIISRW--PKEKENGPKTVNNVQLIH----AGK-ILEDNM--- 68 (117)
Q Consensus 5 ~~~~i~~k~~~G------~~~~~~~v~~~~tV~~lK~~I~~~w--p~~~~~~p~~~~~qrLI~----~Gk-~L~D~~--- 68 (117)
..+.|.+....| ..+ ++.|=.-+||.++|+||.... -.-+...| .++++-|=+ +|+ +|.|.+
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i-~VkVLdCDTItQvKeKiLDavYk~~PySqRP-~~~d~dLEwr~g~~g~liL~D~D~tS 100 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGV-PVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTS 100 (138)
T ss_dssp CEEEEEEEEC-------CCCE-EEEEETTCBHHHHHHHHHHHHTTTSCGGGCC-CGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred EEEEEEEEccCCcccccCCce-eEEEeccccHHHHHHHHHHHHHcCCccccCC-CccceeEEEecCCcCceEeeccCCcc
Confidence 455666544422 233 478878899999999998641 00122334 367777755 344 476642
Q ss_pred ----------cccccCCCCCCCCCcceEEEEEeccC
Q 033522 69 ----------TIAESRLPVVELPGTAITMHVVLRPS 94 (117)
Q Consensus 69 ----------tL~~~~i~~g~~p~~~~t~Hlv~~~~ 94 (117)
||+.|+|++|. +|-|+.+..
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga------~l~l~~~~~ 130 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGA------TVALVPCLT 130 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTC------EEEEEEC--
T ss_pred cccCCceeecchhccCCCCCC------EEEEEECCC
Confidence 69999999998 887776644
No 121
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.31 E-value=0.11 Score=35.52 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=49.3
Q ss_pred eEEEEEEecCC---CeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCC----CCcceeEEE-cCe----ecCCCc-----
Q 033522 6 LIELKFRLADG---ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK----TVNNVQLIH-AGK----ILEDNM----- 68 (117)
Q Consensus 6 ~~~i~~k~~~G---~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~----~~~~qrLI~-~Gk----~L~D~~----- 68 (117)
.+.|.+....| ..+ ++.|=.-+||.++|+||.... +.+.|. .++++.|=+ .|+ +|.|.+
T Consensus 13 ~ltl~v~~~~~~~~~~i-~VkVLdCDTItQvKeKiLd~v---yk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~ 88 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEV-PVKILNCDTITQVKEKILDAI---FKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKI 88 (117)
T ss_dssp EEEEEECCC----CCCE-EEEEETTSBHHHHHHHHHHHH---TTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC
T ss_pred EEEEEEEccCCCCCCce-EeeeecCCchHHHHHHHHHHH---hcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEe
Confidence 45555544332 223 366768899999999998652 223332 268888866 453 466522
Q ss_pred --------cccccCCCCCCCCCcceEEEEEecc
Q 033522 69 --------TIAESRLPVVELPGTAITMHVVLRP 93 (117)
Q Consensus 69 --------tL~~~~i~~g~~p~~~~t~Hlv~~~ 93 (117)
||+.|+|++|. +|-|+.+.
T Consensus 89 ~~~wkrLNTL~HY~V~dga------tl~l~~~~ 115 (117)
T 4e74_A 89 ENDWKRLNTLAHYQVPDGS------VVALVSKQ 115 (117)
T ss_dssp ---CCCCCBHHHHTCCTTC------EEEEEECC
T ss_pred cCcceEeccccccCCCCCC------EEEEEeCC
Confidence 38889999998 88776654
No 122
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=94.35 E-value=0.47 Score=32.83 Aligned_cols=61 Identities=26% Similarity=0.284 Sum_probs=39.3
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcc--cCCCCC--CcceeEEE-cC---eecCCCc--------------cccccCCCCC
Q 033522 21 PSKFSPTTTVASLKEKIISRWPKEK--ENGPKT--VNNVQLIH-AG---KILEDNM--------------TIAESRLPVV 78 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~--~~~p~~--~~~qrLI~-~G---k~L~D~~--------------tL~~~~i~~g 78 (117)
++.+=.-+||.++|++|.... + .+.|.+ ++.+.|=+ .| ++|.|.+ ||+.|+|++|
T Consensus 42 ~VkVLdCDTItQVKEKILdav---Yk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 42 SVNVLDCDTIGQAKEKIFQAF---LSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp EEEEETTCBHHHHHHHHHHHH---HHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred EeeeecCCcHHHHHHHHHHHH---hccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 377778899999999998642 2 233332 56777755 33 3554421 3667889998
Q ss_pred CCCCcceEEEEE
Q 033522 79 ELPGTAITMHVV 90 (117)
Q Consensus 79 ~~p~~~~t~Hlv 90 (117)
. ++-|+
T Consensus 119 a------tlal~ 124 (126)
T 3kuz_A 119 S------TIKVF 124 (126)
T ss_dssp C------EEEEE
T ss_pred C------EEEEe
Confidence 7 66554
No 123
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.06 E-value=0.65 Score=29.77 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=44.8
Q ss_pred ceEEEEEEec------CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCC----CCCcceeEEEcCeecCCCccccccC
Q 033522 5 DLIELKFRLA------DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGP----KTVNNVQLIHAGKILEDNMTIAESR 74 (117)
Q Consensus 5 ~~~~i~~k~~------~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p----~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (117)
.++.|+|++- .|..-.++++++..||.+|.+.+..++|.-...+- .-...+.+.-.|+.... +..
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 3566777664 34432348888889999999999887663211110 00245678888888753 456
Q ss_pred CCCCC
Q 033522 75 LPVVE 79 (117)
Q Consensus 75 i~~g~ 79 (117)
+++||
T Consensus 83 L~dGD 87 (98)
T 1vjk_A 83 LKDGD 87 (98)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 78888
No 124
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=92.88 E-value=1 Score=30.13 Aligned_cols=81 Identities=9% Similarity=0.046 Sum_probs=47.6
Q ss_pred ceEEEEEEecC------CC--eeeeEEeCC---CccHHHHHHHHHhhCCCcccCC--C---CCCcceeEEEcCe---ecC
Q 033522 5 DLIELKFRLAD------GA--DIGPSKFSP---TTTVASLKEKIISRWPKEKENG--P---KTVNNVQLIHAGK---ILE 65 (117)
Q Consensus 5 ~~~~i~~k~~~------G~--~~~~~~v~~---~~tV~~lK~~I~~~wp~~~~~~--p---~~~~~qrLI~~Gk---~L~ 65 (117)
+.|.|++++.. |+ .+ +++++. ..||.+|-+.|.+++|.....+ . . ...+.++-+|+ +|.
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~-~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~l-r~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKH-QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSV-RPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEE-EEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSC-CSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEE-EEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcc-cCCeEEEECCeeeeccC
Confidence 34677777663 32 33 377773 3699999999998887654311 0 0 11233444444 222
Q ss_pred CCccccccCCCCCCCCCcceEEEEEeccCCCC
Q 033522 66 DNMTIAESRLPVVELPGTAITMHVVLRPSLPD 97 (117)
Q Consensus 66 D~~tL~~~~i~~g~~p~~~~t~Hlv~~~~~~~ 97 (117)
. .++.+++|| .|.++....++.
T Consensus 88 g----ldt~L~dGD------eV~iip~vaGG~ 109 (114)
T 1wgk_A 88 E----LDYQLQDQD------SILFISTLHGGS 109 (114)
T ss_dssp T----TTCBCCSSE------EEEEEECSCCCC
T ss_pred C----cCcCCCCCC------EEEEeCCCCCCC
Confidence 2 246789998 777766655553
No 125
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=92.33 E-value=0.57 Score=29.02 Aligned_cols=50 Identities=12% Similarity=0.265 Sum_probs=36.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCc
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNM 68 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~ 68 (117)
|+|+|+.. |....++++++.+||++|=+.+ ++| +...-+...|+++.-++
T Consensus 1 M~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~L---------gl~--~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 1 MNVTVEVV-GEETSEVAVDDDGTYADLVRAV---------DLS--PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp CEEEEECS-SSSEEEEECSTTCSHHHHHHTT---------CCC--SSCCCEECCCCCCCTTS
T ss_pred CEEEEEEe-CccceeEEcCCCCcHHHHHHHc---------CCC--cceEEEEECCEECCHHH
Confidence 46777776 4443458999999999997776 455 36667888999886555
No 126
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=91.60 E-value=1.2 Score=38.22 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=50.5
Q ss_pred ceEEEEEEecCCC------eeeeEEeCCCccHHHHHHHHHhhC--CCcccCCCCCCcceeEEE-c---Ce-ecCCCc---
Q 033522 5 DLIELKFRLADGA------DIGPSKFSPTTTVASLKEKIISRW--PKEKENGPKTVNNVQLIH-A---GK-ILEDNM--- 68 (117)
Q Consensus 5 ~~~~i~~k~~~G~------~~~~~~v~~~~tV~~lK~~I~~~w--p~~~~~~p~~~~~qrLI~-~---Gk-~L~D~~--- 68 (117)
..+.|.+....|. .+ ++.|=.-+||.++|++|...- ..-+...| +++++.|=+ . |+ +|.|.+
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i-~VkVLdCDTItQVKeKiLDavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGV-PVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CEEEEEEECC-------CCCE-EEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred eeEEEEEeecCccccCCCCce-eeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCCcceEEeeCCCCceeecccCccc
Confidence 3456666554332 23 377778899999999998531 11122344 367888865 3 44 477644
Q ss_pred ----------cccccCCCCCCCCCcceEEEEEeccC
Q 033522 69 ----------TIAESRLPVVELPGTAITMHVVLRPS 94 (117)
Q Consensus 69 ----------tL~~~~i~~g~~p~~~~t~Hlv~~~~ 94 (117)
||+.|+|++|+ +|-|+.+..
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga------~v~L~p~~~ 363 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGA------TVALVPCLT 363 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTC------EEEEEEC--
T ss_pred eecCcceeecchhhcCCCCCc------EEEEEeccc
Confidence 59999999998 777765543
No 127
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=91.02 E-value=2.1 Score=27.54 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=42.7
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCC-CCCCcceeEEEcC--eecCCCccccccCCCCCC
Q 033522 22 SKFSPTTTVASLKEKIISRWPKEKENG-PKTVNNVQLIHAG--KILEDNMTIAESRLPVVE 79 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~-p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g~ 79 (117)
+-|+.++|+.++-++++.+= -.--. |..-.-+|..+.| +.|..+.|+++.||..-+
T Consensus 17 V~VDt~dTmdqVA~kvA~Hs--VGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 17 VPVDTEDTMDQVAEKCAYHS--INRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEECTTCBHHHHHHHHHTTT--BTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred EEecCCCcHHHHHHHHhhhh--cceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence 67899999999999998641 10001 2212368899999 999999999999999866
No 128
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=90.72 E-value=1.2 Score=28.71 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=44.1
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCee--cCCCccccccCCCCCC
Q 033522 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI--LEDNMTIAESRLPVVE 79 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~--L~D~~tL~~~~i~~g~ 79 (117)
+-++..+|+.++-++++.+- -.--.+..|.-+|.-+.|+. |.++.|+++.||..-+
T Consensus 19 v~VDt~dtmdqVA~k~A~h~--VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 19 VVVDLNDSMDQVAEKVAYHC--VNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEETTCBHHHHHHHHHHTT--BTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred EEecCCCcHHHHHHHHhhhh--cceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 68899999999999998651 11011123568999999998 9999999999999877
No 129
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=90.16 E-value=2.1 Score=36.58 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=51.4
Q ss_pred ceEEEEEEecCC---CeeeeEEeCCCccHHHHHHHHHhhC--CCcccCCCCCCcceeEEE-c---Ce-ecCCCc------
Q 033522 5 DLIELKFRLADG---ADIGPSKFSPTTTVASLKEKIISRW--PKEKENGPKTVNNVQLIH-A---GK-ILEDNM------ 68 (117)
Q Consensus 5 ~~~~i~~k~~~G---~~~~~~~v~~~~tV~~lK~~I~~~w--p~~~~~~p~~~~~qrLI~-~---Gk-~L~D~~------ 68 (117)
..+.|.+....| ..+ ++.|=.-+||.++|++|...- ..-+...| +++++.|=+ . |+ +|.|.+
T Consensus 232 ~~ltL~v~~~~~~~~~~i-~vkVLdCDTItQVKeKiLdavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQV-PVKVLNCDSITQAKDKLLDTVYKGIPYSQRP-KAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CEEEEEEECTTTC--CEE-EEEEETTCBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred eeEEEEEeccCCCCCCce-eeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCccceeEeeCCCCceeeccCCcccccc
Confidence 345566554443 233 477778899999999998541 11122344 378888865 3 44 466522
Q ss_pred -------cccccCCCCCCCCCcceEEEEEeccC
Q 033522 69 -------TIAESRLPVVELPGTAITMHVVLRPS 94 (117)
Q Consensus 69 -------tL~~~~i~~g~~p~~~~t~Hlv~~~~ 94 (117)
||+.|+|++|. +|-|+.+..
T Consensus 310 ~~wkrLNTL~HY~V~Dga------~v~L~p~~~ 336 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGS------LVALVPKQV 336 (627)
T ss_dssp TTEEECCBTTTTTCCTTC------EEEEEEC--
T ss_pred CceeEecchhhcCCCCCc------eEEEEeccc
Confidence 48899999998 887776654
No 130
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=89.38 E-value=2.3 Score=25.56 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=39.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
|+|+|+-..++. +++++...||.+|.+.+. .+ +....+...|+++..+. .+.+||
T Consensus 5 m~i~vNg~~~~~--~~~~~~~~tv~~Ll~~l~---------~~--~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 5 MKFTVITDDGKK--ILESGAPRRIKDVLGELE---------IP--IETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEEEEETTEEE--EEEESSCCBHHHHHHHTT---------CC--TTTEEEEETTEECCTTS-----BCCTTC
T ss_pred EEEEEeCccCce--eEECCCCCcHHHHHHHhC---------CC--CCCEEEEECCEECCCcc-----cCCCCC
Confidence 566665443332 388888899999999883 22 35677889999987655 567787
No 131
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=89.23 E-value=2.7 Score=26.05 Aligned_cols=67 Identities=7% Similarity=0.106 Sum_probs=42.1
Q ss_pred CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCC----CcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEE
Q 033522 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKT----VNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 90 (117)
Q Consensus 15 ~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~----~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv 90 (117)
.|..-..+++++..||.+|.+.+...+|.-...+-.. ....++.-.|+.... +..+.+|| .|.+.
T Consensus 15 ~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gD------eV~i~ 83 (89)
T 3po0_A 15 AGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGD------ELALF 83 (89)
T ss_dssp HTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTC------EEEEE
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCC------EEEEE
Confidence 4533234888888999999999998876321100000 124677788888765 34578888 66654
Q ss_pred ec
Q 033522 91 LR 92 (117)
Q Consensus 91 ~~ 92 (117)
..
T Consensus 84 Pp 85 (89)
T 3po0_A 84 PP 85 (89)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 132
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=88.41 E-value=0.83 Score=30.69 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=31.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
+.+.|.+.+.+|--+. ++++.++|+.++|+.++++
T Consensus 18 ~~v~v~~LlPnGi~i~-l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMIVT-LECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEEEE-EEeeccccHHHHHHHHHHH
Confidence 6789999999998766 9999999999999999976
No 133
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=88.14 E-value=4.1 Score=29.73 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=39.6
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeE--EE-cCe--ecCC-CccccccCCCCCC
Q 033522 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IH-AGK--ILED-NMTIAESRLPVVE 79 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrL--I~-~Gk--~L~D-~~tL~~~~i~~g~ 79 (117)
++.++..+||.+|++.+.... ++|. -...|| +| .++ .|+| +.||.+++|.++.
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~-----~i~~-~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q 201 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIF-----SIPD-EKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQ 201 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHT-----TCCT-TSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTC
T ss_pred EEEEcccchHHHHHHHHHHHh-----CCCC-CCceEEEEecCCCCeeecCCCCCCHHHhCCCCCC
Confidence 478899999999999998653 4553 136888 34 333 4666 5799999999987
No 134
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=85.79 E-value=8.7 Score=28.25 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=39.3
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE-c----CeecCC-CccccccCCCCCC
Q 033522 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH-A----GKILED-NMTIAESRLPVVE 79 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~-~----Gk~L~D-~~tL~~~~i~~g~ 79 (117)
++.++..+||.+|++.+.... +++. -...||-. . ...|+| +.||.+++|..+.
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~-----~i~~-~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q 213 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLF-----NIPA-ERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQ 213 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHT-----TCCT-TSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTE
T ss_pred EEEecccCcHHHHHHHHHHHh-----CCCC-CCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCC
Confidence 367799999999999998653 4553 13688843 2 235766 5899999999886
No 135
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=84.55 E-value=5.8 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=21.0
Q ss_pred CCeeeeEEeC--CCccHHHHHHHHHhhCCCc
Q 033522 16 GADIGPSKFS--PTTTVASLKEKIISRWPKE 44 (117)
Q Consensus 16 G~~~~~~~v~--~~~tV~~lK~~I~~~wp~~ 44 (117)
|..-.+++++ +..||.+|.+.+.++.|..
T Consensus 18 g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~ 48 (99)
T 2qjl_A 18 KQRVHKIKMDKEDPVTVGDLIDHIVSTMINN 48 (99)
T ss_dssp TCCEEEEEECSCSCCBHHHHHHHHHHHTCSS
T ss_pred CCcEEEEecCCCCCCcHHHHHHHHHHHCchh
Confidence 4432336666 6789999999999887643
No 136
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=84.15 E-value=3.3 Score=24.76 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=33.7
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcce--eEEEcCeecCCCccccccCCCCCC
Q 033522 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNV--QLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~q--rLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++++++..||.+|.+.+..++|. + ..+ .+...|+....+ ..+.+||
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p~-~-------~~v~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYPQ-I-------NNKKFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCGG-G-------TTCCCEEEETTEEECTT-----SEECTTC
T ss_pred EEECCCCCCHHHHHHHHHHHCcc-h-------hcceEEEEECCEECCCC-----CCcCCCC
Confidence 47777889999999999876542 2 233 788889888653 4677888
No 137
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=82.44 E-value=11 Score=27.94 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=52.0
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc---Ce--ecCCCccccccCCCCCCC
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---GK--ILEDNMTIAESRLPVVEL 80 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---Gk--~L~D~~tL~~~~i~~g~~ 80 (117)
.|.++|.+.+| ++. +.+++++|+.+|=+.|.+. -++.. .+..=|.|. |. .|+.++.+.+.++..+.
T Consensus 1 ~i~~~V~l~d~-~~~-~~v~~~tt~~el~~~v~~~-----l~L~e-~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~- 71 (294)
T 1ef1_A 1 TISVRVTTMDA-ELE-FAIQPNTTGKQLFDQVVKT-----IGLRE-VWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES- 71 (294)
T ss_dssp CEEEEEEETTE-EEE-EEECTTCBHHHHHHHHHHH-----HTCCC-GGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCS-
T ss_pred CEEEEEEECCc-eEE-EEECCCCcHHHHHHHHHHH-----cCCCC-cceeEEEEECCCCceeecccccCHHhhccCCCC-
Confidence 37889999998 666 9999999999999999854 24432 345555542 32 57777778776554333
Q ss_pred CCcceEEEEEeccCC
Q 033522 81 PGTAITMHVVLRPSL 95 (117)
Q Consensus 81 p~~~~t~Hlv~~~~~ 95 (117)
+..+++-++--.
T Consensus 72 ---~~~l~fr~kf~~ 83 (294)
T 1ef1_A 72 ---PLLFKFRAKFYP 83 (294)
T ss_dssp ---SEEEEEEESSCC
T ss_pred ---CEEEEEEEEEEC
Confidence 445666555443
No 138
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=81.26 E-value=6.7 Score=23.49 Aligned_cols=70 Identities=4% Similarity=0.048 Sum_probs=41.7
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEE
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM 87 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~ 87 (117)
.|+++.-..-.-.++++ +..||.+|.+.+... | ++... ....++.-+|+...+. +..+.+|| .+
T Consensus 2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~-~-~l~~~---l~~~~vavN~~~v~~~----~~~l~~gD------eV 65 (74)
T 3rpf_C 2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEK-E-GLKEW---LGVCAIALNDHLIDNL----NTPLKDGD------VI 65 (74)
T ss_dssp EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC-T-TTTTT---TTTCEEEESSSEECCT----TCCCCTTC------EE
T ss_pred EEEEEEEeecceeEEee-CCCcHHHHHHHHHHC-c-CHHHH---hhccEEEECCEEcCCC----CcCCCCCC------EE
Confidence 34454443321134778 678999999999754 2 12111 1457777788875432 34678888 77
Q ss_pred EEEecc
Q 033522 88 HVVLRP 93 (117)
Q Consensus 88 Hlv~~~ 93 (117)
.+....
T Consensus 66 ~i~Ppv 71 (74)
T 3rpf_C 66 SLLPPV 71 (74)
T ss_dssp EEECCB
T ss_pred EEECCC
Confidence 655443
No 139
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=81.21 E-value=12 Score=28.04 Aligned_cols=77 Identities=9% Similarity=0.041 Sum_probs=53.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE--cCe--ecCCCccccccCCCCCCC
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGK--ILEDNMTIAESRLPVVEL 80 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~--~Gk--~L~D~~tL~~~~i~~g~~ 80 (117)
..+.++|.+.+| ++. +.+++++|+.+|=+.|... -++.. .+..=|.| .|. .|+.++.|.+..+..+.
T Consensus 21 ~~~~~~V~lldg-~~~-~~v~~~t~~~el~~~v~~~-----l~L~e-~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~- 91 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EME-FNCEMKWKGKDLFDLVCRT-----LGLRE-TWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEE- 91 (314)
T ss_dssp CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHH-----HTCCC-GGGEEEEEEETTEEEECCTTSBGGGSSCCCSS-
T ss_pred CeeEEEEEeCCc-eEE-EEeCCCCcHHHHHHHHHHH-----hCCCC-CccceEEEEeCCcCeeCCCccCHHHcCCCCCC-
Confidence 568899999999 766 9999999999999999854 24432 45555555 332 58888888876554433
Q ss_pred CCcceEEEEEecc
Q 033522 81 PGTAITMHVVLRP 93 (117)
Q Consensus 81 p~~~~t~Hlv~~~ 93 (117)
+..+++-++-
T Consensus 92 ---~~~l~fr~kf 101 (314)
T 1h4r_A 92 ---PVTFHFLAKF 101 (314)
T ss_dssp ---SEEEEEEESS
T ss_pred ---CEEEEEEEEE
Confidence 4456655543
No 140
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=81.12 E-value=3.7 Score=24.75 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=36.5
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEec
Q 033522 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 92 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~ 92 (117)
++ ++..||.+|.+.+....|.-..-++ .....+...|+.... +..+.+|+ .|.+...
T Consensus 21 ~~-~~~~tv~~ll~~L~~~~p~~~~~l~--~~~~~v~vN~~~v~~-----~~~l~~gD------~V~i~Pp 77 (81)
T 1fm0_D 21 VA-ADFPTVEALRQHMAAQSDRWALALE--DGKLLAAVNQTLVSF-----DHPLTDGD------EVAFFPP 77 (81)
T ss_dssp EC-SCCSBHHHHHHHHHTTCHHHHHHHC--CTTCEEEETTEECCT-----TCBCCTTC------EEEEECC
T ss_pred Ec-CCCCCHHHHHHHHHHHChhHHHHhc--CCCEEEEECCEECCC-----CCCCCCCC------EEEEeCC
Confidence 44 5678999999999866542111111 234678888887753 34678888 7776543
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.95 E-value=1.7 Score=28.28 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=50.7
Q ss_pred CCCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCC
Q 033522 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPV 77 (117)
Q Consensus 2 ~~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~ 77 (117)
+-+.++++-|...-.+... +-|+|..+..+|=-.|.++ .+..|.+....|=--++..|+=+.+|.||||.+
T Consensus 6 ~PE~TvRLvVNy~~tQKtV-vRVSP~vpL~ellp~IC~K----cefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTI-VRVSPHASLQELAPIICSK----CEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCCSCEEEEEEETTTEEEE-EEECSSSCTTTHHHHHHHH----TTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CCccEEEEEEeecCcceeE-EEeCCCCcHHHHHHHHhhc----ccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3467888989887554434 8999999999999999865 232333233333344566788899999999986
No 142
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=79.24 E-value=9.4 Score=24.19 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=36.1
Q ss_pred cCCCeeeeEEeCCC-ccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033522 14 ADGADIGPSKFSPT-TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~-~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++|+. +++++. .||.+|.+.+. ++ +..+.+...|+++..+ ...+..|.+||
T Consensus 25 vNGe~---~el~~~~~Tv~dLL~~L~---------~~--~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 25 LNGKD---VKWKKDTGTIQDLLASYQ---------LE--NKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp ETTEE---ECCSSSCCBHHHHHHHTT---------CT--TSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred ECCEE---EECCCCCCcHHHHHHHhC---------CC--CCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 47754 778887 99999998883 22 3667788899988543 23345688888
No 143
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=78.16 E-value=5.6 Score=26.17 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=42.6
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeE------EEcCeecCCCcccccc
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL------IHAGKILEDNMTIAES 73 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrL------I~~Gk~L~D~~tL~~~ 73 (117)
..+-|+|-..+|.... +.|++++|+.+|-+.++.+ -.... ...=-| ++.-|.|+|-+.|-+.
T Consensus 8 ~k~vvkvf~~Dgssks-i~V~~~~Ta~dv~~~L~~K-----~~~~~-~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRS-VEVAAGATARHVCEMLVQR-----AHALS-DETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCEEE-EEECTTCCHHHHHHHHHCS-----SSCCC-CCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHH-----cCCCC-CCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 5678999999999855 9999999999999999854 11110 111111 1345788888776555
No 144
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=77.91 E-value=17 Score=32.99 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=57.1
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCc-ccCCCCCCcceeEEEcCe-----ec-CCCccccccCC
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGK-----IL-EDNMTIAESRL 75 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~-~~~~p~~~~~qrLI~~Gk-----~L-~D~~tL~~~~i 75 (117)
..+.+.|.|.+.+|-.+. +++..+.|++++|+.|+.+-... ....-.+++.-.+.+-.+ .+ ++.+.|.+.+.
T Consensus 48 ~~~~v~vd~LLPnGi~i~-~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~ 126 (1092)
T 2y3a_A 48 SDGAISVDFLLPTGIYIQ-LEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRP 126 (1092)
T ss_dssp CCSEEEEEEECTTCCEEE-EEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCB
T ss_pred CCCceEEEEECCCceEEE-EEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeecc
Confidence 457899999999998876 99999999999999999761100 011222456777777332 24 55688888874
Q ss_pred CCCCCCCcceEEEEEec
Q 033522 76 PVVELPGTAITMHVVLR 92 (117)
Q Consensus 76 ~~g~~p~~~~t~Hlv~~ 92 (117)
-.+ .+.|+-+
T Consensus 127 ~~p-------~l~lve~ 136 (1092)
T 2y3a_A 127 FLP-------VLKLVTR 136 (1092)
T ss_dssp SSS-------CEEEEES
T ss_pred cce-------EEEEEec
Confidence 432 6777776
No 145
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=76.90 E-value=6.3 Score=23.10 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred ecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033522 13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 13 ~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
+++|+. +++++..||.+|.+.+. .+ +..+.+...|+++..++ ..+..+.+||
T Consensus 4 ~vNg~~---~~~~~~~tv~~ll~~l~---------~~--~~~v~vavN~~~v~~~~-~~~~~L~~gD 55 (66)
T 1f0z_A 4 LFNDQA---MQCAAGQTVHELLEQLD---------QR--QAGAALAINQQIVPREQ-WAQHIVQDGD 55 (66)
T ss_dssp EESSCE---ECCCTTCCHHHHHHHHT---------CC--CSSEEEEETTEEECHHH-HTTCCCCTTE
T ss_pred EECCEE---EEcCCCCcHHHHHHHcC---------CC--CCCEEEEECCEECCchh-cCCcCCCCCC
Confidence 347764 77888899999999883 22 36677888888875321 2234577787
No 146
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=76.58 E-value=8.6 Score=24.43 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=36.6
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCe
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk 62 (117)
+.+.|++... -++. +.++++.+..+|.++|.++. .+| ++.++|-|.-+
T Consensus 4 ~~~~VKV~~~--~tva-irvp~~~~y~~L~~~l~~kL-----~l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKL-----ELR--LEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEEE-EEECTTCCHHHHHHHHHHHT-----TCC--GGGCCEEECCT
T ss_pred CcEEEEEEEE--EEEE-EECCCCCCHHHHHHHHHHHh-----CCC--cceeEEEeeCC
Confidence 4567777665 4666 99999999999999999653 344 48888888654
No 147
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=76.40 E-value=17 Score=30.31 Aligned_cols=80 Identities=9% Similarity=0.044 Sum_probs=54.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC-----eecCCCccccccCCCCCC
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG-----KILEDNMTIAESRLPVVE 79 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G-----k~L~D~~tL~~~~i~~g~ 79 (117)
..|.++|.+.+| ++. |.|++++|+.+|=+.|... -++. .....=|.|.. .+|+.++.+.+.++..+.
T Consensus 3 k~i~v~V~llDg-t~e-~~vd~~tt~~ell~~V~~~-----LgL~-e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~ 74 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELE-FAIQQTTTGKQLFDQVVKT-----IGLR-EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKEN 74 (575)
T ss_dssp CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHH-----HTCC-CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCS
T ss_pred ceEEEEEEeCCC-eEE-EEECCCCCHHHHHHHHHHH-----cCCC-CccceeEEEEecCcchhHhhccccHHHhcccCCC
Confidence 468899999999 666 9999999999999999854 2443 24555565532 367777777776555433
Q ss_pred CCCcceEEEEEeccCCC
Q 033522 80 LPGTAITMHVVLRPSLP 96 (117)
Q Consensus 80 ~p~~~~t~Hlv~~~~~~ 96 (117)
+..+++-++--.+
T Consensus 75 ----~~~L~FRvkfy~~ 87 (575)
T 2i1j_A 75 ----PLQFKFRAKFYPE 87 (575)
T ss_dssp ----SEEEEEEESSCCS
T ss_pred ----CeEEEEEEEEcCC
Confidence 4566665554443
No 148
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=76.29 E-value=3.7 Score=26.43 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=26.7
Q ss_pred EEEEEecCCCeeeeEEeC-CCccHHHHHHHHHhh
Q 033522 8 ELKFRLADGADIGPSKFS-PTTTVASLKEKIISR 40 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~-~~~tV~~lK~~I~~~ 40 (117)
.|.+|+.+.+....+.|+ ...+|.+||+.|..+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~ 41 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGR 41 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHH
Confidence 467777888877778886 678999999999854
No 149
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=76.10 E-value=2.7 Score=27.54 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=39.2
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCC-CCc----ceeEEEcC-eecCC------CccccccCCCCCCCCCcceEEE
Q 033522 21 PSKFSPTTTVASLKEKIISRWPKEKENGPK-TVN----NVQLIHAG-KILED------NMTIAESRLPVVELPGTAITMH 88 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~-~~~----~qrLI~~G-k~L~D------~~tL~~~~i~~g~~p~~~~t~H 88 (117)
+++|+++.|..+|-+.+.++-..... -|. +.. .-.|+..+ ..|+. +++|.++|+.+|+ .||
T Consensus 8 ~l~v~~~~TL~~lid~L~~~p~~qlk-~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~------ei~ 80 (98)
T 1y8x_B 8 NIQFSPSAKLQEVLDYLTNSASLQMK-SPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ------ELA 80 (98)
T ss_dssp CEECCTTCBHHHHHHHHHHCTTCCCS-SCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC------EEE
T ss_pred EEEECCchhHHHHHHHHHhChHhhcc-CCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC------EEE
Confidence 49999999999999999864111111 121 011 23344333 24543 4569999999998 777
Q ss_pred EE
Q 033522 89 VV 90 (117)
Q Consensus 89 lv 90 (117)
+.
T Consensus 81 Vt 82 (98)
T 1y8x_B 81 VA 82 (98)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 150
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=74.83 E-value=12 Score=23.08 Aligned_cols=72 Identities=6% Similarity=0.007 Sum_probs=42.6
Q ss_pred CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCC------CCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEE
Q 033522 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK------TVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (117)
Q Consensus 15 ~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~------~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~H 88 (117)
.|... +++. +..||.+|.+.+..++|.-...+-. -...+++.-.|+...+..-+ +..+.+|+ .|.
T Consensus 15 ~g~~~-~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gD------eV~ 85 (93)
T 3dwg_C 15 TGGQK-SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGD------SVT 85 (93)
T ss_dssp TTTCS-EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTC------EEE
T ss_pred hCCCe-EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCC------EEE
Confidence 45432 3775 4579999999999887742211100 01246777788876542222 34678888 777
Q ss_pred EEeccCC
Q 033522 89 VVLRPSL 95 (117)
Q Consensus 89 lv~~~~~ 95 (117)
+.....+
T Consensus 86 i~Ppv~G 92 (93)
T 3dwg_C 86 ILPAVAG 92 (93)
T ss_dssp EEECCTT
T ss_pred EECCCCC
Confidence 6654443
No 151
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=74.53 E-value=21 Score=27.50 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=44.6
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC---------eecCCCccccccCC
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---------KILEDNMTIAESRL 75 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G---------k~L~D~~tL~~~~i 75 (117)
.+.++|.+.+|.... +.+++++|+.+|=+.|..+ -++. +.+..-|.+.- +.|+-++++.+-+.
T Consensus 85 ~~~~~V~l~dg~~~~-~~vd~~tt~~el~~~v~~~-----l~L~-e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKT-IMVDDSKTVTDMLMTICAR-----IGIT-NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp EEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHH-----TTCS-CGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred eeEEEEECcCCCEEE-EEECCCCCHHHHHHHHHHH-----cCCC-CccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 467889999999865 9999999999999999854 2443 24566665532 35666666666544
No 152
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=73.52 E-value=2.5 Score=25.82 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=31.5
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033522 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++++++..||.+|.+.+. ++ ...+.+...|++...+ ..|.+||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~---------~~--~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG---------FN--TESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT---------CS--SCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EEECCCCCcHHHHHHHhC---------CC--CcCEEEEECCEECCCC-----CCcCCCC
Confidence 477888899999988873 23 3567788899988655 3566666
No 153
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=71.34 E-value=13 Score=21.64 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=38.1
Q ss_pred ecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEe
Q 033522 13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (117)
Q Consensus 13 ~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~ 91 (117)
+++|+. +++ +..||.+|.+.+. .+ +..+.+...|+++..+ .-.+..+.+|| .+-++.
T Consensus 3 ~vNg~~---~~~-~~~tv~~ll~~l~---------~~--~~~v~vavN~~~v~~~-~~~~~~L~dgD------~v~i~~ 59 (64)
T 2cu3_A 3 WLNGEP---RPL-EGKTLKEVLEEMG---------VE--LKGVAVLLNEEAFLGL-EVPDRPLRDGD------VVEVVA 59 (64)
T ss_dssp EETTEE---ECC-TTCCHHHHHHHHT---------BC--GGGEEEEETTEEEEGG-GCCCCCCCTTC------EEEEEE
T ss_pred EECCEE---EEc-CCCcHHHHHHHcC---------CC--CCcEEEEECCEECCcc-ccCCcCCCCCC------EEEEEe
Confidence 357754 667 7789999999883 22 3677788889887533 12334678888 665544
No 154
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=69.37 E-value=10 Score=23.34 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=41.1
Q ss_pred ecCCCeeeeEEeC--CCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEE
Q 033522 13 LADGADIGPSKFS--PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 90 (117)
Q Consensus 13 ~~~G~~~~~~~v~--~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv 90 (117)
+++|+. ++++ +..||.+|-+.+--.| +..+-+-+.|.++.-+ ...+..+.+|| .+-++
T Consensus 4 ~vNGe~---~e~~~~~~~Tl~~LL~~l~~~~----------~~~vAVavNg~iVpr~-~~~~~~L~dGD------~IEIv 63 (78)
T 2k5p_A 4 TVNGKP---STVDGAESLNVTELLSALKVAQ----------AEYVTVELNGEVLERE-AFDATTVKDGD------AVEFL 63 (78)
T ss_dssp EETTEE---EECSSCSCEEHHHHHHHHTCSC----------TTTCCEEETTEECCTT-HHHHCEECSSB------CEEEC
T ss_pred EECCEE---EEcCCCCCCcHHHHHHHcCCCC----------CCcEEEEECCEECChH-HcCcccCCCCC------EEEEE
Confidence 346754 7777 7899999988873111 2455678899888554 24445678888 56544
Q ss_pred eccCCC
Q 033522 91 LRPSLP 96 (117)
Q Consensus 91 ~~~~~~ 96 (117)
--..++
T Consensus 64 ~~VgGG 69 (78)
T 2k5p_A 64 YFMGGG 69 (78)
T ss_dssp CCCCCS
T ss_pred eeecCC
Confidence 444333
No 155
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=68.88 E-value=13 Score=22.59 Aligned_cols=61 Identities=8% Similarity=0.120 Sum_probs=40.4
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEecc
Q 033522 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 93 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~~ 93 (117)
++|+. +++ +..||.+|-+.+- ++ +..+-+-..|.++.-+ ...+..+++|| .+-++.-.
T Consensus 5 vNG~~---~e~-~~~Tl~~LL~~l~---------~~--~~~vAV~vNg~iVpr~-~~~~~~L~dGD------~veIv~~V 62 (73)
T 2kl0_A 5 INGEQ---REV-QSASVAALMTELD---------CT--GGHFAVALNYDVVPRG-KWDETPVTAGD------EIEILTPR 62 (73)
T ss_dssp ETTEE---ECC-CCSBHHHHHHHTT---------CC--SSSCEEEESSSEECHH-HHTTCBCCTTC------EEEEECCC
T ss_pred ECCEE---EEc-CCCcHHHHHHHcC---------CC--CCcEEEEECCEECChH-HcCcccCCCCC------EEEEEccc
Confidence 46754 666 7789999988772 33 3667788899888543 23445788888 66655444
Q ss_pred CCC
Q 033522 94 SLP 96 (117)
Q Consensus 94 ~~~ 96 (117)
.++
T Consensus 63 gGG 65 (73)
T 2kl0_A 63 QGG 65 (73)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 156
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=66.72 E-value=7.5 Score=29.34 Aligned_cols=78 Identities=10% Similarity=-0.075 Sum_probs=50.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc---C--eecCCCccccccCCCCCC
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---G--KILEDNMTIAESRLPVVE 79 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~g~ 79 (117)
..+.++|.+.+|.... ++|++.+|+.+|=+.|... -++. +.+..=|.|. | ..|+.++.+.+... +.
T Consensus 16 ~~~~~~V~lldgt~~~-~~vd~~tt~~el~~~v~~~-----l~L~-e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~--~~ 86 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYE-CVVEKHAKGQDLLKRVCEH-----LNLL-EEDYFGLAIWDNATSKTWLDSAKEIKKQVR--GV 86 (296)
T ss_dssp -CCEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHH-----HTCS-SGGGEEEEEEEETTEEEECCTTSBHHHHC-----
T ss_pred ceEEEEEEccCCCEEE-EEECCCCCHHHHHHHHHHH-----cCCC-CcceeEEEEEcCCCccchhccchhHHHhcC--CC
Confidence 4688999999999865 9999999999999999854 2443 2444455443 2 36777777766431 11
Q ss_pred CCCcceEEEEEeccCC
Q 033522 80 LPGTAITMHVVLRPSL 95 (117)
Q Consensus 80 ~p~~~~t~Hlv~~~~~ 95 (117)
+.++++-++--.
T Consensus 87 ----~~~l~frvkfy~ 98 (296)
T 3qij_A 87 ----PWNFTFNVKFYP 98 (296)
T ss_dssp ----CCEEEEEESSCC
T ss_pred ----CcEEEEEEEEeC
Confidence 336665554433
No 157
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=65.66 E-value=12 Score=28.60 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHh
Q 033522 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIIS 39 (117)
Q Consensus 2 ~~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~ 39 (117)
|+...+-++|-..+|.... +.|++++|+.+|-+.++.
T Consensus 27 a~~~k~ivkv~~~D~ss~~-l~V~~~~TA~dv~~~L~~ 63 (281)
T 4gmv_A 27 AQVKKLVIRVHMSDDSSKT-MMVDERQTVRQVLDNLMD 63 (281)
T ss_dssp TSSCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHH
T ss_pred cCcccEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHH
Confidence 5557788999899998865 999999999999888774
No 158
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=65.07 E-value=41 Score=25.46 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=33.8
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCe-ecCC
Q 033522 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-ILED 66 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk-~L~D 66 (117)
........+.+.+..|+.++++.+.++ .+++ ++.|.|+|.|. +.-|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----t~i~--~~~q~~l~~~~~~~~~ 364 (396)
T 4eut_A 318 LQQMTAHKIYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLVLE 364 (396)
T ss_dssp TTTTEEEEEEECTTCBHHHHHHHHHHH-----HCCC--STTEEEESSSSEECCC
T ss_pred eccceEEEEEcCchhHHHHHHHHHHHh-----cCCC--hhhhHHHhcCCCCCCC
Confidence 334343447889999999999999843 4565 58999999994 4434
No 159
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=58.09 E-value=36 Score=22.25 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCCCceEEEEEEe----cCCCeeeeEEeCC----CccHHHHHHHHHhhCCCcc
Q 033522 1 MAGEDLIELKFRL----ADGADIGPSKFSP----TTTVASLKEKIISRWPKEK 45 (117)
Q Consensus 1 ~~~~~~~~i~~k~----~~G~~~~~~~v~~----~~tV~~lK~~I~~~wp~~~ 45 (117)
||....|+|+|-- ..|+.. .++++. ..||.+|=+.|.+++|.+.
T Consensus 1 ~~~~m~v~V~f~g~l~~l~g~~~-~v~l~~~~g~~~TV~dLl~~L~~~~~~~r 52 (110)
T 2k9x_A 1 MSNHNHITVQFAGGCELLFAKQT-SLQLDGVVPTGTNLNGLVQLLKTNYVKER 52 (110)
T ss_dssp CCCSSCCEEEEESSCGGGTTSCS-EECCCCSCGGGCCHHHHHHHHTTTTCCSC
T ss_pred CCCccEEEEEEEecHHHHhCCeE-EEEeCCcCCCCccHHHHHHHHHHHccccc
Confidence 5555555555532 245543 377773 3599999999998877653
No 160
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=56.68 E-value=19 Score=24.66 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=35.0
Q ss_pred EEeCC----CccHHHHHHHHHhhCCCccc-CCCCC-CcceeEEEcCeecCC-CccccccCCCCCC
Q 033522 22 SKFSP----TTTVASLKEKIISRWPKEKE-NGPKT-VNNVQLIHAGKILED-NMTIAESRLPVVE 79 (117)
Q Consensus 22 ~~v~~----~~tV~~lK~~I~~~wp~~~~-~~p~~-~~~qrLI~~Gk~L~D-~~tL~~~~i~~g~ 79 (117)
+.|++ .+|..+|-+.|..+. ++. .+... .+.+||||-=-+=++ +++|+++|+..|+
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~--gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gs 72 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKY--SYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGS 72 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHH--TCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTC
T ss_pred EEeCcccccccCHHHHHHHHHHhc--CCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCc
Confidence 55553 357777666665442 221 22221 236899988765443 7899999999886
No 161
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=55.97 E-value=20 Score=22.48 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=23.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHH
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEK 36 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~ 36 (117)
..++|+|...+|.... +++++..|+.+.=..
T Consensus 2 ~~~~v~~~~~~g~~~~-~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIM-IEGNEGDSILDLAHA 32 (103)
T ss_dssp CCEEEEEECTTCCEEE-EEECTTCBHHHHHHH
T ss_pred CceEEEEEeCCCCEEE-EEECCCCHHHHHHHH
Confidence 4578888878897655 999999999876433
No 162
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=55.47 E-value=15 Score=21.39 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=21.7
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHH
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASLKEKII 38 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~ 38 (117)
.+++.+.+|+. ++++..+|+.+|-+.+.
T Consensus 2 ~i~i~~p~g~~---~~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 2 EVMVFTPKGEI---KRLPQGATALDFAYSLH 29 (73)
T ss_dssp CEEEECTTCCE---EEECTTCBHHHHHHHHC
T ss_pred eEEEEcCCCCE---EEcCCCCcHHHHHHHHh
Confidence 46666677864 78889999999988874
No 163
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=55.04 E-value=22 Score=29.00 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=31.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033522 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
...+.++|.+.+|.... +.+++.+|+.+|-+.|+.+
T Consensus 214 ~~~~~~~V~l~dg~~~~-~~v~~~tt~~el~~~v~~~ 249 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCK-ITINSHTTAGEVVEKLIRG 249 (555)
T ss_dssp TCCEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHHH
T ss_pred CCCcceEEEecCCCeEE-EEeCCCCcHHHHHHHHHHH
Confidence 35688999999999866 9999999999999999865
No 164
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=53.66 E-value=23 Score=26.68 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=28.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHh
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIIS 39 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~ 39 (117)
...-|+|-..+|.... +.|++++|+.+|-+.++.
T Consensus 7 ~~~ivkv~~~d~ss~~-l~V~~~mta~ev~~~l~~ 40 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSKV-VEILADMTARDLCQLLVY 40 (256)
T ss_dssp -CEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHC
T ss_pred CceEEEEEecCCcEEE-EEECCCCCHHHHHHHHHH
Confidence 4556788888998765 999999999999988874
No 165
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=50.26 E-value=45 Score=20.94 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=41.8
Q ss_pred EEEEEEec------CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCC-CCC--Ccce-------eEEEcCeecCCCccc
Q 033522 7 IELKFRLA------DGADIGPSKFSPTTTVASLKEKIISRWPKEKENG-PKT--VNNV-------QLIHAGKILEDNMTI 70 (117)
Q Consensus 7 ~~i~~k~~------~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~-p~~--~~~q-------rLI~~Gk~L~D~~tL 70 (117)
+.|+|++. .|.. +++++ ..||.+|.+.+..++|.-...+ ... ...+ .+...|+.....+ -
T Consensus 4 m~v~V~~fa~lr~~~g~~--~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTP--ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSS--EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCC--eEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 45555554 3443 25665 6899999999988766321111 000 0134 6777887663221 1
Q ss_pred cccCCCCCCCCCcceEEEEEe
Q 033522 71 AESRLPVVELPGTAITMHVVL 91 (117)
Q Consensus 71 ~~~~i~~g~~p~~~~t~Hlv~ 91 (117)
.+..+.+|| .|.++.
T Consensus 80 ~~~~L~~gD------~V~i~p 94 (99)
T 2l52_A 80 LETLLKDSD------EIGILP 94 (99)
T ss_dssp TTSCCCTTE------EEEEEC
T ss_pred CCCCCCCCC------EEEEEC
Confidence 234678888 776654
No 166
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=49.19 E-value=19 Score=32.76 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=50.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCccc---CCCCCCcceeEEEcCe-----ec-CCCccccccCCCC
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKE---NGPKTVNNVQLIHAGK-----IL-EDNMTIAESRLPV 77 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~---~~p~~~~~qrLI~~Gk-----~L-~D~~tL~~~~i~~ 77 (117)
+.|.|.+.+|-.+. ++++.+.|+.++|+.++.+- ... ..-.+++.-.+.|-.. .+ ++.+.|-|+.+--
T Consensus 43 i~vd~LLPnGi~i~-l~v~~~~tl~~iK~~lw~~a--~~~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~~ 119 (1091)
T 3hhm_A 43 ILVECLLPNGMIVT-LECLREATLITIKHELFKEA--RKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLFQ 119 (1091)
T ss_dssp EEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHHG--GGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBSS
T ss_pred eEEEEEcCCCeEEE-EEecCCCcHHHHHHHHHHHH--HhCcchhhcCChhHeEEEEEccCceEeeeecCceeeEEeeccc
Confidence 88999999999876 99999999999999999651 111 0111345555555443 24 4455676666443
Q ss_pred CCCCCcceEEEEEecc
Q 033522 78 VELPGTAITMHVVLRP 93 (117)
Q Consensus 78 g~~p~~~~t~Hlv~~~ 93 (117)
. .+.|+.+.
T Consensus 120 ~-------~l~lve~~ 128 (1091)
T 3hhm_A 120 P-------FLKVIEPV 128 (1091)
T ss_dssp S-------EEEEECCC
T ss_pred e-------eEEEEecC
Confidence 1 66655554
No 167
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=48.46 E-value=42 Score=20.14 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=38.4
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcc-------cCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEe
Q 033522 22 SKFSPTTTVASLKEKIISRWPKEK-------ENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~-------~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~ 91 (117)
++++...||.+|.+.+..+.|.-. .+ . ...+.+...|+.....+ -.+..+++|+ .|.++.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~--~~~v~v~vN~~~v~~~~-~~~~~l~~gD------~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNN-L--FKNVIILVNGNNITSMK-GLDTEIKDDD------KIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC-S--TTTCEEEESSSBGGGTC-SSSCBCCTTC------EEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccC-c--CcceEEEECCEEccccC-CCCcCCCCCC------EEEEeC
Confidence 677777899999999987755210 01 1 13567888888775211 1234678888 777654
No 168
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=48.30 E-value=22 Score=22.58 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHH
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLK 34 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK 34 (117)
-++|+|...+|+.+. +++++..|+.+.=
T Consensus 5 m~~v~~~~~~g~~~~-~~~~~g~tlL~aa 32 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIP-VSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEEEECTTSCEEE-EEEETTCBHHHHH
T ss_pred cEEEEEEcCCCCEEE-EEECCCCcHHHHH
Confidence 367888777898755 9999999998753
No 169
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=45.93 E-value=32 Score=29.20 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=37.0
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH 59 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~ 59 (117)
..+.++|.+.+|.... ++|++.+|+.+|=+.|..+- ++. .....-|.|
T Consensus 262 ~~i~~~V~llDgt~~~-~~vds~Tt~~ell~~V~~~L-----gL~-e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKT-LLTDSATTARELCNALADKI-----SLK-DRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHHHT-----TCS-SCTTEEEEE
T ss_pred CceEEEEEecCCceEE-EEEccCCcHHHHHHHHHHHc-----CCc-ccccceeEE
Confidence 5688999999998865 99999999999999998652 332 235555655
No 170
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=45.91 E-value=26 Score=22.25 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=22.3
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHH
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASLKE 35 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~ 35 (117)
+|+|...+|.... +++++..|+.+.=.
T Consensus 2 ~vt~~~~~G~~~~-~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTE-IQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEE-EECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCChHHHHHH
Confidence 5889889998865 99999999987533
No 171
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=42.93 E-value=34 Score=29.15 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=38.5
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCee-cCCCccccccC
Q 033522 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI-LEDNMTIAESR 74 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~-L~D~~tL~~~~ 74 (117)
.+++.. .+.+.+++|+.++++.|. +.+++| ++.|-||+.+.. |+.....+.|.
T Consensus 319 ~~~~~~-~~~i~~~~tl~~l~~~i~-----~~T~i~--~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 319 VSGRVH-TYPVTENENLQNLKSWLQ-----QDTGIP--EEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSCCC-EEECCTTCCHHHHHHHHH-----TTSCCC--STTCEEESSSSCCCCTTSCGGGSC
T ss_pred cccccc-eeecCCCccHHHHHHHHH-----HHhCCC--HHHHHHHhccCCCCCCCcchhhhe
Confidence 344443 489999999999999998 346787 488888887664 55555666554
No 172
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=42.41 E-value=44 Score=21.29 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=25.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
..+.|+|-.- + .+.-+-++++.+..+||++|..+
T Consensus 11 ~~~KVK~yy~-D-DIiAIrvP~di~~~~L~dKi~~R 44 (85)
T 1ip9_A 11 KTTKIKFYYK-D-DIFALMLKGDTTYKELRSKIAPR 44 (85)
T ss_dssp CCEEEEECBT-T-CCEEEEECSCCCHHHHHHHHHHH
T ss_pred CceEEEEEec-C-cEEEEECCCCCCHHHHHHHHHHH
Confidence 4566666554 3 34449999999999999999965
No 173
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=41.07 E-value=40 Score=21.63 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCCCc-----eEEEEEEecCCC----eeeeEEeCCCccHHHHHHHHHhh
Q 033522 1 MAGED-----LIELKFRLADGA----DIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 1 ~~~~~-----~~~i~~k~~~G~----~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
||++. .|.|+|+-.... ..+ +.|+.+.|+.++-..|+++
T Consensus 3 ~~~~~~~~~~KV~V~~~~~~~~P~l~k~K-flV~~~~t~~~~~~~lRkr 50 (96)
T 1wz3_A 3 MATESPNSVQKIVVHLRATGGAPILKQSK-FKVSGSDKFANVIDFLRRQ 50 (96)
T ss_dssp ---------CEEEEEEEECTTCCCCSCCE-EEEETTSBTHHHHHHHHHH
T ss_pred cCCCCCCCCCeEEEEEEECCCCCcccccE-EEeCCCCcHHHHHHHHHHh
Confidence 56544 888999887441 113 8899999999999999865
No 174
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=40.10 E-value=23 Score=23.90 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=25.9
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc
Q 033522 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~ 60 (117)
+|.|--++|+.+||+.|++. -|+| +++|||-..
T Consensus 59 ~~rv~k~~~~~~~~~~va~~-----lg~~--~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQT-----MGFP--QDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHH-----hCCC--cccEEEEEe
Confidence 47777899999999999854 3666 599999644
No 175
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=40.01 E-value=47 Score=23.98 Aligned_cols=35 Identities=6% Similarity=0.164 Sum_probs=28.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
..+.|+|-..+|... .+.|++++|+.+|-+.|...
T Consensus 33 ~k~~v~v~~~d~~~k-~i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 33 KKLVVKVHMDDSSTK-SLMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTCBHHHHHHHHHHH
T ss_pred cceEEEEEcCCCceE-EEEeCCCCcHHHHHHHHHHH
Confidence 456677777788774 49999999999999988754
No 176
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=39.65 E-value=30 Score=23.29 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=24.8
Q ss_pred CCcceeEEEcCeecCCCccccccCCCCC
Q 033522 51 TVNNVQLIHAGKILEDNMTIAESRLPVV 78 (117)
Q Consensus 51 ~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (117)
+|-.+||-+.|++.+|+..=++|....|
T Consensus 59 ~PYyLRL~lP~~vved~~~~A~YD~d~g 86 (115)
T 3eud_A 59 SPYYLRLRFPHELIDDERSTAQYDSKDE 86 (115)
T ss_dssp TTEEEEEECSSCEECSTTCEEEEETTTT
T ss_pred CCeEEEEecCcceecCCCcceEEeCCCc
Confidence 3679999999999999888888998877
No 177
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=38.42 E-value=60 Score=20.84 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=42.4
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEecc
Q 033522 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 93 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~~ 93 (117)
-+++=+..+..||+.+..+. ++.. +.=.+...+..|++.++|.|-.++-.- .+.++++-
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl-----~i~L--~~y~f~LQd~~L~~~k~LvdQcVqgeG------lVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRL-----QCSL--DAHEICLQDIQLDPDRSLFDQGVKTDG------TVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHH-----CSCC--SSCEEEETTEECCTTSBTTTSSCCCCS------EEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHh-----cCCc--ccCeEEeeccccCCCccHHHhhccccc------EEEEEEEE
Confidence 45666778899999998552 4443 566677788889999999999988544 45554444
No 178
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=36.19 E-value=51 Score=20.26 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHH
Q 033522 6 LIELKFRLADGADIGPSKFSPTTTVASLKEK 36 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~ 36 (117)
.++|+|...+|.... +++++..|+.+.=..
T Consensus 4 ~~~v~~~~~~~~~~~-~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 4 VHTITAVTEDGESLR-FECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEEETTTEEEE-EEEESCCTHHHHHHH
T ss_pred cEEEEEEecCCCcEE-EEeCCCChHHHHHHH
Confidence 567888776676644 999999999876444
No 179
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=35.78 E-value=44 Score=21.04 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHH
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASL 33 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~l 33 (117)
.-++|+|...+|+.+. +++++..|+.+.
T Consensus 5 ~m~~V~~~~~~g~~~~-v~~~~g~tLL~a 32 (108)
T 2bt6_A 5 DKITVHFINRDGETLT-TKGKIGDSLLDV 32 (108)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTCBHHHH
T ss_pred ceEEEEEECCCCCEEE-EEECCCChHHHH
Confidence 4467888877898755 999999999875
No 180
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=35.42 E-value=1.6e+02 Score=24.05 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=0.0
Q ss_pred eEEEEEEecCCCeee-eEEeCCCccHHHHHHHHHhhCCCcccCCC-CCCcceeE--EEcCe---ecCCCccccccC
Q 033522 6 LIELKFRLADGADIG-PSKFSPTTTVASLKEKIISRWPKEKENGP-KTVNNVQL--IHAGK---ILEDNMTIAESR 74 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~-~~~v~~~~tV~~lK~~I~~~wp~~~~~~p-~~~~~qrL--I~~Gk---~L~D~~tL~~~~ 74 (117)
.+.|.+.....+... .+-++.+.||.||-+.+. ..-+++ .+...+|| ||.|| ++.++.+|+...
T Consensus 339 ~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~-----k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~ 409 (530)
T 2ylm_A 339 SFKCIWLNSQFREEEITLYPDKHGCVRDLLEECK-----KAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLS 409 (530)
T ss_dssp CEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHH-----TTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSC
T ss_pred eEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHH-----HhcCCCcCCcccEEEEEEECCEEEEecCCCccccccc
No 181
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=33.96 E-value=1.1e+02 Score=20.66 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=43.9
Q ss_pred EEeCCCccHHHHHHHHHhhC----CCcccCCCCCCcceeEEEcCeec--CCCccccccCCCCCCCCCcceEEEEE
Q 033522 22 SKFSPTTTVASLKEKIISRW----PKEKENGPKTVNNVQLIHAGKIL--EDNMTIAESRLPVVELPGTAITMHVV 90 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~w----p~~~~~~p~~~~~qrLI~~Gk~L--~D~~tL~~~~i~~g~~p~~~~t~Hlv 90 (117)
+-++|+++-.+|-+.+...| | |+..|.- +...-..+|+.. +.+++|++.||..-+ .+.+.
T Consensus 42 ~p~pP~mpFg~lv~~vl~~~~~~hP-Dfa~idw--s~v~W~l~g~pftPD~~kSLaenG~~HKs------~lrf~ 107 (119)
T 3u52_E 42 LLVQPGMTFSALVDEILKPATAAHP-DSAKADF--LNAEWLLNDEPFTPKADASLKEQGIDHKS------MLTVT 107 (119)
T ss_dssp EEECTTSBHHHHHHHTHHHHTTTST-TGGGCCT--TSSEEEETTEEECCCTTSBTTTTTCCTTE------EEEEE
T ss_pred ecCCCCCCHHHHHHHhcchhhhcCC-ccccCCc--chheEEECCccCCCChhhhHHHcCCCchh------eEEEe
Confidence 77899999999998887543 2 3444432 455667789976 458999999999876 66654
No 182
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=33.75 E-value=42 Score=23.53 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=20.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHH
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKE 35 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~ 35 (117)
+.|+|. ++|+.+. +++++++|+.++=.
T Consensus 4 ~~i~~~-vNG~~~~-~~v~~~~tLLd~LR 30 (166)
T 1n62_A 4 AHIELT-INGHPVE-ALVEPRTLLIHFIR 30 (166)
T ss_dssp EEEEEE-ETTEEEE-EEECTTCBHHHHHH
T ss_pred ceEEEE-ECCEEEE-EecCCCCcHHHHHH
Confidence 356663 4899876 89999999997533
No 183
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=33.48 E-value=43 Score=23.42 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=19.6
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHH
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASLKE 35 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~ 35 (117)
.|+|. ++|+.+. +++++++|+.++=.
T Consensus 5 ~i~~~-vNG~~~~-~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 5 IITVN-VNGKAQE-KAVEPRTLLIHFLR 30 (163)
T ss_dssp EEEEE-ETTEEEE-EEECTTCBHHHHHH
T ss_pred eEEEE-ECCEEEE-EecCCCCcHHHHHH
Confidence 45553 4899876 89999999987533
No 184
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=33.27 E-value=75 Score=20.12 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=26.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhC
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRW 41 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~w 41 (117)
..|.||+.. .|..+. +.++++.+-.+|.+++.+..
T Consensus 5 ~~vkvK~~~-~gdi~~-~~v~~~i~~~~L~~kv~~~~ 39 (89)
T 1vd2_A 5 SQVRVKAYY-RGDIMI-THFEPSISFEGLCNEVRDMC 39 (89)
T ss_dssp SCEEEEEES-SSCEEE-EEECTTCCHHHHHHHHHHHT
T ss_pred CeEEEEEEe-CCeEEE-EECCCCCCHHHHHHHHHHHh
Confidence 456666644 355544 99999999999999998664
No 185
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=31.93 E-value=42 Score=23.26 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=21.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHH
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKI 37 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I 37 (117)
..|+|. ++|+.+. +++++++|+.++=...
T Consensus 3 ~~i~~~-vNG~~~~-v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 3 NILRLT-LNGRARE-DLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEEEE-ETTEEEE-EEEETTCBHHHHHHHT
T ss_pred ceEEEE-ECCEEEE-EecCCcCcHHHHHHHc
Confidence 345663 5999876 8899999998765443
No 186
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=31.58 E-value=51 Score=23.05 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=19.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHH
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASL 33 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~l 33 (117)
+.|+|. ++|+.+. ++++|++|+.++
T Consensus 4 ~~i~~~-vNG~~~~-v~v~p~~tLLd~ 28 (160)
T 3hrd_D 4 ITINLN-LNGEARS-IVTEPNKRLLDL 28 (160)
T ss_dssp EEEEEE-ETTEEEE-EEECSSSBHHHH
T ss_pred ceEEEE-ECCEEEE-EecCCCCCHHHH
Confidence 566663 5898866 999999999875
No 187
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=31.47 E-value=61 Score=20.21 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=20.6
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHH
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASLKE 35 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~ 35 (117)
+|+|...+|.... +++++..|+.+.=.
T Consensus 2 ~V~~~~~~g~~~~-~~~~~g~tlLeaa~ 28 (106)
T 1xlq_A 2 KVVYVSHDGTRRE-LDVADGVSLMQAAV 28 (106)
T ss_dssp EEEEECTTSCEEE-EECCTTCBHHHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCCcHHHHHH
Confidence 5777777887654 99999999987633
No 188
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=31.21 E-value=48 Score=23.05 Aligned_cols=64 Identities=14% Similarity=0.323 Sum_probs=40.3
Q ss_pred CCCccHHHHHHHHHhhCCCccc-CC--------CC------CCcceeEEEcCeec-CCCccccccCCCCCCCCCcceEEE
Q 033522 25 SPTTTVASLKEKIISRWPKEKE-NG--------PK------TVNNVQLIHAGKIL-EDNMTIAESRLPVVELPGTAITMH 88 (117)
Q Consensus 25 ~~~~tV~~lK~~I~~~wp~~~~-~~--------p~------~~~~qrLI~~Gk~L-~D~~tL~~~~i~~g~~p~~~~t~H 88 (117)
=.+.|..+|-..|.+.-|.... +. |. -..++=-++.|+-- +|++||.++++.-|+ .|-
T Consensus 61 W~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGD------yid 134 (143)
T 4a6q_A 61 WMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGD------YLD 134 (143)
T ss_dssp CTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTC------EEE
T ss_pred CCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCC------EEE
Confidence 3778999999998876554321 10 10 00122234555543 679999999999999 777
Q ss_pred EEeccC
Q 033522 89 VVLRPS 94 (117)
Q Consensus 89 lv~~~~ 94 (117)
+.+-++
T Consensus 135 vaI~pP 140 (143)
T 4a6q_A 135 IAITPP 140 (143)
T ss_dssp EEEECG
T ss_pred EEEeCC
Confidence 666543
No 189
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=30.73 E-value=65 Score=19.49 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHH
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEK 36 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~ 36 (117)
.+|+|...+| ... +++++..|+.+.=..
T Consensus 2 ~~v~~~~~~g-~~~-~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 2 YKTVLKTPSG-EFT-LDVPEGTTILDAAEE 29 (95)
T ss_dssp EEEEEEETTE-EEE-EEECTTCCHHHHHHH
T ss_pred eEEEEEeCCC-cEE-EEeCCCCcHHHHHHH
Confidence 4677776777 434 999999999876433
No 190
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=30.19 E-value=68 Score=19.98 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=19.8
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHH
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASL 33 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~l 33 (117)
+|+|...+|.... +++++..|+.+.
T Consensus 2 ~v~~~~~~g~~~~-~~~~~g~tlL~a 26 (106)
T 1uwm_A 2 KIIFIEHNGTRHE-VEAKPGLTVMEA 26 (106)
T ss_dssp EEEEECTTCCEEE-EECCTTSBHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCCcHHHH
Confidence 5777777887654 999999999875
No 191
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=29.45 E-value=58 Score=22.55 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHH
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEK 36 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~ 36 (117)
+.+.|+|. ++|+.+. +++++++|+.++=..
T Consensus 8 ~~m~i~~~-ing~~~~-~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 8 QLMRISAT-INGKPRV-FYVEPRMHLADALRE 37 (168)
T ss_dssp CCEEEEEE-ETTEEEE-EEECTTSBHHHHHHH
T ss_pred CcceEEEE-ECCEEEE-EecCCCCcHHHHHHh
Confidence 34566664 4888866 889999999876444
No 192
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=29.11 E-value=62 Score=21.43 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHH
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASL 33 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~l 33 (117)
.-.+|+|...+|.... +++++..|+.+.
T Consensus 20 ~M~~Vt~~~~~G~~~~-v~~~~G~tLL~a 47 (126)
T 3hui_A 20 HMAKINFVDHTGETRT-VEVEEGATVMEA 47 (126)
T ss_dssp SEEEEEEECTTSCEEE-EEEETTSBHHHH
T ss_pred CceEEEEEeCCCCEEE-EEECCCCcHHHH
Confidence 3468888878997755 999999999875
No 193
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=29.00 E-value=99 Score=24.36 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=37.9
Q ss_pred EEEEe------cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCC-CCCCcceeEE--E--cC--eecCCCcccccc
Q 033522 9 LKFRL------ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENG-PKTVNNVQLI--H--AG--KILEDNMTIAES 73 (117)
Q Consensus 9 i~~k~------~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~-p~~~~~qrLI--~--~G--k~L~D~~tL~~~ 73 (117)
|+|+. .+|... .+.+++++||.+|=..|... ...|+ +..++..=|. + .| +.|+.+++|.+.
T Consensus 24 ~~~~~~~~~~~~~~~~k-~v~~d~~ttV~dVi~~i~~~---~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 24 LKVCFYSNSFNPGKNFK-LVKCTVQTEIREIITSILLS---GRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp EEEEECCSSSCGGGEEE-EEEEETTCBHHHHHHHHHHT---TTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred EEEEecccccCCCCCeE-EEEeCCCCcHHHHHHHHHHH---hhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 45566 566654 49999999999999999731 11121 1123444443 3 12 578888887764
No 194
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=27.49 E-value=51 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=25.6
Q ss_pred eEEEEEEecCCCeeeeEEeCC--CccHHHHHHHH
Q 033522 6 LIELKFRLADGADIGPSKFSP--TTTVASLKEKI 37 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~--~~tV~~lK~~I 37 (117)
-..|+|-+.+|.... ++|+. ++|+.+|-+.+
T Consensus 5 ~~~i~V~l~dg~~~~-~~i~~~~~tt~~el~e~l 37 (322)
T 4dxa_B 5 FEKVRIYRMDGSYRS-VELKHGNNTTVQQIMEGM 37 (322)
T ss_dssp CCEEEEECTTSCEEE-EECTTGGGCCHHHHHTTS
T ss_pred ceEEEEEEECCcEEE-EEEcCCCCCcHHHHHHHh
Confidence 467888899999866 99999 99999995543
No 195
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=26.93 E-value=1.3e+02 Score=19.42 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=25.6
Q ss_pred eEEEEEEecCC------CeeeeEEeCCCccHHHHHHHHHhhC
Q 033522 6 LIELKFRLADG------ADIGPSKFSPTTTVASLKEKIISRW 41 (117)
Q Consensus 6 ~~~i~~k~~~G------~~~~~~~v~~~~tV~~lK~~I~~~w 41 (117)
+|.||+...+- ..+..+-|+++.+-.+|..+|.++.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHH
Confidence 46666665421 2233489999999999999998653
No 196
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=26.10 E-value=1.5e+02 Score=20.50 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=40.8
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCC---CCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEeccCCC
Q 033522 22 SKFSPTTTVASLKEKIISRWPKEKENGPK---TVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 96 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~---~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~~~~~ 96 (117)
++++. .||.+|.+.+...+|.-...+-. -...+.+..+|+.....+- .+..+++|| .|.++....++
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGD------eVai~PpVsGG 87 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGA------TLDLFPPVAGG 87 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTC------EEEEECSCCSE
T ss_pred EEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCC------EEEEECccccc
Confidence 77776 89999999998776521110000 0145677888887765321 234688898 77765444443
No 197
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=25.82 E-value=1.6e+02 Score=26.66 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=46.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCC-CCCcceeEEEcCe--ecCCCccccccC
Q 033522 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGP-KTVNNVQLIHAGK--ILEDNMTIAESR 74 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p-~~~~~qrLI~~Gk--~L~D~~tL~~~~ 74 (117)
..+.|.+...++++-.++.+++++|+.+|-+.+..++..-..... ..+++--|--.|+ .|-.+-.|.++.
T Consensus 217 ~~~~i~v~~~~~~~~~t~~v~~~~tp~~li~~~~~k~~~~~~~~~~~~~~dyvLkv~G~~eyl~g~~~L~~f~ 289 (1092)
T 2y3a_A 217 GKLVVAVHFENSQDVFSFQVSPNLNPIKINELAIQKRLTIRGKEDEASPCDYVLQVSGRVEYVFGDHPLIQFQ 289 (1092)
T ss_dssp SCEEEEEEETTCSCCEEEEECTTSCTHHHHHHHHCCCCC-------CCGGGEEEEETTBSCEECSSSCGGGBH
T ss_pred CcEEEEEEEecCCceEEEEecCCCCHHHHHHHHHHHHHHhcCCCccCChhheEEEeccceeEEeCCcceehhH
Confidence 457777776655544569999999999999999987643211011 1356778877887 465557777775
No 198
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=23.92 E-value=1.5e+02 Score=18.90 Aligned_cols=65 Identities=8% Similarity=-0.041 Sum_probs=38.4
Q ss_pred eEEEEEEec--CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033522 6 LIELKFRLA--DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 6 ~~~i~~k~~--~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
.|+|.+-.. ......++++++.+||+++=+.+-=. ....++ +.+...+-..|+.... +..+.+||
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~--~~~peI--dl~~~~V~Vng~~v~~-----d~~L~dGD 78 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL--SQFPEI--DLSTNKIGIFSRPIKL-----TDVLKEGD 78 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH--HHCTTC--CTTTSEEEEEECSCCT-----TCBCCTTC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC--ccCCcc--cccccEEEEcCEECCC-----CccCCCCC
Confidence 344444444 33333358899999999987776310 011112 2245778888888873 34567888
No 199
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=23.10 E-value=1.1e+02 Score=18.59 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=22.8
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHH
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASLKEKII 38 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~ 38 (117)
+|.+.+.+|.. ++++...|+.|+=..|-
T Consensus 7 ~i~v~tP~G~~---~~lp~GaT~~D~A~~Ih 34 (78)
T 3hvz_A 7 EVFVFTPKGDV---ISLPIGSTVIDFAYAIH 34 (78)
T ss_dssp EEEEECTTSCE---EEEETTCBHHHHHHHHC
T ss_pred eEEEECCCCCE---EEecCCCCHHHHHHHhh
Confidence 46777788964 78999999999988774
No 200
>4eo0_A Attachment protein G3P; filamentuos phage, infection, pilus binding, gene-3-protein, receptor binding, N-pilus; 1.61A {Enterobacteria phage ike}
Probab=22.53 E-value=73 Score=20.90 Aligned_cols=24 Identities=17% Similarity=0.538 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCCcccCCCCCCcceeEEEcCeec
Q 033522 32 SLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL 64 (117)
Q Consensus 32 ~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L 64 (117)
++|--+..-||. ++.||+|.|-..
T Consensus 58 qik~t~~g~wp~---------s~frlv~~~~c~ 81 (115)
T 4eo0_A 58 QIKLTLSGTWPN---------SQFRLVTGDTCV 81 (115)
T ss_dssp HHHHHHHHHCTT---------CCEEEEECSSCE
T ss_pred hcccceecccCC---------ceEEEEeCCcee
Confidence 566666667763 799999999865
No 201
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=21.57 E-value=92 Score=18.90 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=19.2
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHH
Q 033522 8 ELKFRLADGADIGPSKFSPTTTVASLKEK 36 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~ 36 (117)
+|+|...+| ... +++++..|+.+.=..
T Consensus 2 ~v~~~~~~g-~~~-~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 2 KVTLKTPSG-EET-IECPEDTYILDAAEE 28 (94)
T ss_dssp EEEEEETTE-EEE-EECCTTSCHHHHHHH
T ss_pred EEEEEeCCC-cEE-EEECCCCcHHHHHHH
Confidence 567766666 434 999999999876444
No 202
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.92 E-value=1.3e+02 Score=18.22 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=20.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHH
Q 033522 7 IELKFRLADGADIGPSKFSPTTTVASLKEKI 37 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I 37 (117)
.+|+|...+| ... +++++..|+.+.=..-
T Consensus 2 ~~V~~~~~~~-~~~-~~~~~g~tlL~a~~~~ 30 (93)
T 1wri_A 2 YKVTLKTPDG-DIT-FDVEPGERLIDIGSEK 30 (93)
T ss_dssp EEEEEEETTE-EEE-EEECTTSCHHHHHHHH
T ss_pred EEEEEEECCC-eEE-EEECCCCcHHHHHHHC
Confidence 4677766665 434 9999999998765554
No 203
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=20.89 E-value=21 Score=23.75 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHH
Q 033522 3 GEDLIELKFRLADGADIGPSKFSPTTTVASL 33 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~l 33 (117)
..+.++|+|...+|.... +++.+..|+.++
T Consensus 2 ~~~~v~Vtf~~~~G~~~~-v~~~~G~tLl~a 31 (123)
T 3n9z_C 2 SEDKITVHFINRDGETLT-TKGKVGDSLLDV 31 (123)
T ss_dssp -------------------------------
T ss_pred CCCcEEEEEEeCCCCEEE-EEECCCCcHHHH
Confidence 346678899888898755 899999888764
No 204
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=20.07 E-value=1.6e+02 Score=17.92 Aligned_cols=30 Identities=3% Similarity=-0.007 Sum_probs=20.2
Q ss_pred eEEEEEEecCCC-eeeeEEeCCCccHHHHHHH
Q 033522 6 LIELKFRLADGA-DIGPSKFSPTTTVASLKEK 36 (117)
Q Consensus 6 ~~~i~~k~~~G~-~~~~~~v~~~~tV~~lK~~ 36 (117)
..+|+|...+|. ... +++++..|+.+.=..
T Consensus 2 ~~~V~~~~~~~~~~~~-~~~~~g~tlL~a~~~ 32 (98)
T 1czp_A 2 TFKVTLINEAEGTKHE-IEVPDDEYILDAAEE 32 (98)
T ss_dssp EEEEEEEETTTTEEEE-EEEETTSCHHHHHHH
T ss_pred ceEEEEEeCCCCCcEE-EEeCCCCCHHHHHHH
Confidence 356777665553 334 899999999876443
Done!