Query 033524
Match_columns 117
No_of_seqs 123 out of 1197
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bn0_A 30S ribosomal protein S 100.0 5.7E-36 1.9E-40 216.7 0.7 73 1-73 1-83 (112)
2 3pys_P 30S ribosomal protein S 100.0 8.8E-35 3E-39 200.9 3.5 70 2-71 1-82 (83)
3 3r8n_P 30S ribosomal protein S 100.0 1.3E-33 4.4E-38 194.7 6.0 66 2-67 1-79 (82)
4 3bbn_P Ribosomal protein S16; 100.0 6.9E-35 2.4E-39 203.3 -3.9 73 2-74 1-82 (88)
5 1vbv_A Hypothetical protein B0 60.4 5.3 0.00018 27.5 2.4 13 12-24 46-58 (105)
6 1xrx_A SEQA protein; protein f 27.4 34 0.0012 21.1 1.9 33 36-68 2-38 (50)
7 1lg7_A VSV matrix protein; vir 15.8 5.1 0.00017 30.8 -4.4 11 14-24 54-64 (182)
8 3qbu_A Putative uncharacterize 12.3 1.4E+02 0.0049 22.9 2.9 34 37-70 41-90 (326)
9 1ytr_A Bacteriocin plantaricin 12.1 30 0.001 18.6 -0.8 19 49-67 7-25 (26)
10 2w2r_A Matrix protein; viral a 11.9 8.1 0.00028 30.5 -4.4 12 14-25 100-111 (228)
No 1
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=100.00 E-value=5.7e-36 Score=216.65 Aligned_cols=73 Identities=37% Similarity=0.666 Sum_probs=62.1
Q ss_pred CccEEeeccCCCCCCCeeEEEEeccCCCCCCCCC----------CcceEEehHHHHHHHHCCCccCHHHHHHHHHcCCCC
Q 033524 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS----------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 70 (117)
Q Consensus 1 MaVkIRLaR~G~KkrPfYrIVVadsR~~RDGk~~----------~k~i~Ln~eRi~yWL~~GAqPT~tV~~LLk~aGil~ 70 (117)
|||+|||+|+|||++|||||||+|||++|||+++ ++.+.||+|||+|||++|||||++|++||+++|+++
T Consensus 1 M~VkIRL~R~G~KkrPfYrIVVaDsR~~RDGr~IE~lG~YnP~~~~~v~ld~eri~~WL~~GAQPTdtV~~LL~~ag~~~ 80 (112)
T 3bn0_A 1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPEKVKEWVLKGVELSHRAKAILWNHGILK 80 (112)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETTTTEEEEECHHHHHHHHHTTCEEEHHHHHHHHHTTHHH
T ss_pred CcEEehhhcCCCCCCCeEEEEEEecCCCCCCCCEeEeeeccCCCcceEEEcHHHHHHHHHcCCccCHHHHHHHHHcCCcc
Confidence 9999999999999999999999999999999643 358999999999999999999999999999999998
Q ss_pred CCC
Q 033524 71 PPP 73 (117)
Q Consensus 71 ~~p 73 (117)
.++
T Consensus 81 ~~~ 83 (112)
T 3bn0_A 81 EVV 83 (112)
T ss_dssp HHC
T ss_pred cch
Confidence 873
No 2
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=100.00 E-value=8.8e-35 Score=200.85 Aligned_cols=70 Identities=46% Similarity=0.895 Sum_probs=64.9
Q ss_pred ccEEeeccCCCCCCCeeEEEEeccCCCCCCCCC------------CcceEEehHHHHHHHHCCCccCHHHHHHHHHcCCC
Q 033524 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS------------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 69 (117)
Q Consensus 2 aVkIRLaR~G~KkrPfYrIVVadsR~~RDGk~~------------~k~i~Ln~eRi~yWL~~GAqPT~tV~~LLk~aGil 69 (117)
||+|||+|+||||+|||||||+|||++|||+++ ++.+.||+||++|||++||||||+|++||+++|++
T Consensus 1 MvkIRL~R~G~kkrPfYrIVvadsr~~RdGr~IE~lG~YnP~~~~~~~i~l~~eri~~Wl~~GAqptdtV~~ll~~~g~~ 80 (83)
T 3pys_P 1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF 80 (83)
T ss_dssp CEEEECCCCSSTTCCCCCCEEEESSSCTTCCCSEECCCBCSSCCSTTCBCCCHHHHHHHHHTCCCBCSTTGGGTGGGCSS
T ss_pred CcEEeeecCCCCCCCeEEEEEEecCCCCCCCceeeeeEEcCCCCCCceEEEchHHHHHHHHCCCcCCHHHHHHHHHcCcc
Confidence 499999999999999999999999999999532 34799999999999999999999999999999998
Q ss_pred CC
Q 033524 70 PP 71 (117)
Q Consensus 70 ~~ 71 (117)
.+
T Consensus 81 ~~ 82 (83)
T 3pys_P 81 RQ 82 (83)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 3
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=100.00 E-value=1.3e-33 Score=194.67 Aligned_cols=66 Identities=41% Similarity=0.708 Sum_probs=60.9
Q ss_pred ccEEeeccCCCCCCCeeEEEEeccCCCCCCCC---------C----CcceEEehHHHHHHHHCCCccCHHHHHHHHHcC
Q 033524 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQD---------S----GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 67 (117)
Q Consensus 2 aVkIRLaR~G~KkrPfYrIVVadsR~~RDGk~---------~----~k~i~Ln~eRi~yWL~~GAqPT~tV~~LLk~aG 67 (117)
||+|||+|+||||+|||||||+|||++|||++ . ++.+.||+||++|||++|||||++|++||++++
T Consensus 1 mvkIRL~R~G~kk~PfYrIVvadsr~~RdGr~IE~lG~YnP~~~~~~~~v~l~~eri~~Wl~~GAqptdtV~~Ll~~a~ 79 (82)
T 3r8n_P 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVN 79 (82)
T ss_dssp CEEEEEEECSCTTSCCEEEEEEETTSCTTSCEEEEEEEECTTCCSSSCCCCCCHHHHHHHHHHTCEECHHHHHHHTTSC
T ss_pred CcEEhhhcCCCCCCCEEEEEEeecCCCCCCCceeeeeEEcCCCCCCcceEEEcHHHHHHHHHCCCccCHHHHHHHHhhh
Confidence 49999999999999999999999999999942 2 247999999999999999999999999999886
No 4
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.97 E-value=6.9e-35 Score=203.30 Aligned_cols=73 Identities=37% Similarity=0.568 Sum_probs=67.0
Q ss_pred ccEEeeccCCCCCCCeeEEEEeccCCCCCCCCC---------CcceEEehHHHHHHHHCCCccCHHHHHHHHHcCCCCCC
Q 033524 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGQDS---------GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 72 (117)
Q Consensus 2 aVkIRLaR~G~KkrPfYrIVVadsR~~RDGk~~---------~k~i~Ln~eRi~yWL~~GAqPT~tV~~LLk~aGil~~~ 72 (117)
||+|||+|+|||++|||||||+|||++|||+++ .+.+.||+||++|||++||||||+|++||+++|+++++
T Consensus 1 mvkIRL~R~G~KkrPfYrIVvadsr~~RDGr~IE~lG~YnP~~~~~~l~~eri~~Wl~~GAqpTdtV~~ll~~~g~~~~~ 80 (88)
T 3bbn_P 1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKGAQPTETVYDILKRAEVFKEF 80 (88)
T ss_dssp CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTSSCBCCCTTTSSSSTTSSCEECTTTSSSSTTTTSSSCC
T ss_pred CeEEecccCCCCCCCeEEEEEEecCCCCCCCcEeEEEeccCCCCceEEcHHHHHHHHHcCCccCHHHHHHHHHcCCcccc
Confidence 489999999999999999999999999999643 45799999999999999999999999999999999988
Q ss_pred Cc
Q 033524 73 PM 74 (117)
Q Consensus 73 p~ 74 (117)
+.
T Consensus 81 ~~ 82 (88)
T 3bbn_P 81 RL 82 (88)
T ss_dssp --
T ss_pred cc
Confidence 74
No 5
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=60.36 E-value=5.3 Score=27.50 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.4
Q ss_pred CCCCCeeEEEEec
Q 033524 12 CKNKPFYRVMAAD 24 (117)
Q Consensus 12 ~KkrPfYrIVVad 24 (117)
.+++|||+|+|-|
T Consensus 46 ~~~QPfYhVL~e~ 58 (105)
T 1vbv_A 46 LRAAPWYHVVMED 58 (105)
T ss_dssp --CCCEEEEEEEC
T ss_pred cCCCCceEEEEeC
Confidence 4899999988754
No 6
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=27.38 E-value=34 Score=21.14 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=24.8
Q ss_pred cceEEehHHHHHHHHC----CCccCHHHHHHHHHcCC
Q 033524 36 KRMGLNFDRVKYWLSV----GAQPSDPVQRILFRAGL 68 (117)
Q Consensus 36 k~i~Ln~eRi~yWL~~----GAqPT~tV~~LLk~aGi 68 (117)
+.|.+|-|-.+|-.++ |-.+|+..++||...+.
T Consensus 2 K~IEvDdelY~YIas~t~~igEsaSdiLRRll~l~~~ 38 (50)
T 1xrx_A 2 KTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAA 38 (50)
T ss_dssp EEEEECHHHHHHHHTTCSSTTCCHHHHHHHHHTC---
T ss_pred CceeecHHHHHHHHHhchhhccCHHHHHHHHHcCCcc
Confidence 4688999999998776 77788888888877654
No 7
>1lg7_A VSV matrix protein; virus matrix, viral protein; 1.96A {Vesicular stomatitis virus} SCOP: d.213.1.1
Probab=15.82 E-value=5.1 Score=30.75 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=8.7
Q ss_pred CCCeeEEEEec
Q 033524 14 NKPFYRVMAAD 24 (117)
Q Consensus 14 krPfYrIVVad 24 (117)
+|||||||+.-
T Consensus 54 KrpFYr~i~~~ 64 (182)
T 1lg7_A 54 KRPFYKILAFL 64 (182)
T ss_dssp GHHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 78999988654
No 8
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=12.29 E-value=1.4e+02 Score=22.89 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=26.4
Q ss_pred ceEEehHHHHHHHHCCC----------------ccCHHHHHHHHHcCCCC
Q 033524 37 RMGLNFDRVKYWLSVGA----------------QPSDPVQRILFRAGLLP 70 (117)
Q Consensus 37 ~i~Ln~eRi~yWL~~GA----------------qPT~tV~~LLk~aGil~ 70 (117)
.+.+|+|....|++.+. .=++++..||++.|+-.
T Consensus 41 ~lt~D~D~~~~w~~~~~~~~~~~~~s~~~yG~~~~~~rlL~lL~~~~v~a 90 (326)
T 3qbu_A 41 AYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPA 90 (326)
T ss_dssp EEEEECCHHHHHHHTSSCTTCHHHHHHHHHHHHTHHHHHHHHHHHTTCCC
T ss_pred EEEEeCCCcccccccCCccCchhhcchhhcCcHHhHHHHHHHHHHcCCCE
Confidence 37899999999997654 23567889999988743
No 9
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=12.10 E-value=30 Score=18.55 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=14.9
Q ss_pred HHCCCccCHHHHHHHHHcC
Q 033524 49 LSVGAQPSDPVQRILFRAG 67 (117)
Q Consensus 49 L~~GAqPT~tV~~LLk~aG 67 (117)
|..||.--..|.+|+++.|
T Consensus 7 lqmgataikqvkklfkkwg 25 (26)
T 1ytr_A 7 LQMGATAIKQVKKLFKKWG 25 (26)
T ss_dssp CCSSSHHHHHHHHHHTTCC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 4567777788999998876
No 10
>2w2r_A Matrix protein; viral assembly, viral morphogenesis, VSV, polymer, viral protein; HET: MSE; 1.83A {Vesicular stomatitis virus}
Probab=11.85 E-value=8.1 Score=30.54 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=9.3
Q ss_pred CCCeeEEEEecc
Q 033524 14 NKPFYRVMAADS 25 (117)
Q Consensus 14 krPfYrIVVads 25 (117)
+|||||||+.-.
T Consensus 100 KrpFYr~i~~~~ 111 (228)
T 2w2r_A 100 KRPFYKIIALIG 111 (228)
T ss_dssp GHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 789999887654
Done!