Query 033528
Match_columns 117
No_of_seqs 144 out of 1090
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1.8E-43 3.9E-48 241.5 10.9 104 1-117 1-104 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 3.5E-42 7.7E-47 231.3 8.4 98 6-117 2-99 (148)
3 KOG0425 Ubiquitin-protein liga 100.0 9.4E-41 2E-45 225.3 11.6 117 1-117 1-117 (171)
4 KOG0419 Ubiquitin-protein liga 100.0 1.1E-39 2.4E-44 214.6 8.1 101 3-117 2-102 (152)
5 KOG0426 Ubiquitin-protein liga 100.0 5.6E-39 1.2E-43 211.6 9.5 116 1-117 1-116 (165)
6 PTZ00390 ubiquitin-conjugating 100.0 5.5E-38 1.2E-42 215.6 12.2 98 6-117 3-100 (152)
7 PLN00172 ubiquitin conjugating 100.0 1.1E-37 2.3E-42 213.2 12.0 97 7-117 3-99 (147)
8 PF00179 UQ_con: Ubiquitin-con 100.0 3.8E-35 8.3E-40 198.6 8.6 97 9-117 1-97 (140)
9 KOG0418 Ubiquitin-protein liga 100.0 3.2E-34 7E-39 198.6 8.3 98 6-117 4-105 (200)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 1.4E-33 3.1E-38 191.2 10.8 97 8-117 2-98 (141)
11 KOG0421 Ubiquitin-protein liga 100.0 3.2E-34 6.8E-39 191.5 6.8 101 3-117 27-127 (175)
12 KOG0424 Ubiquitin-protein liga 100.0 2.8E-33 6E-38 186.7 9.2 104 3-117 2-109 (158)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.7E-32 8E-37 185.0 10.9 98 8-117 1-98 (145)
14 KOG0427 Ubiquitin conjugating 100.0 2.3E-30 4.9E-35 170.6 10.8 99 4-117 14-113 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 6.2E-31 1.3E-35 174.7 7.8 98 6-116 3-100 (153)
16 KOG0894 Ubiquitin-protein liga 100.0 2.7E-30 5.9E-35 182.5 10.2 104 1-117 1-104 (244)
17 KOG0416 Ubiquitin-protein liga 100.0 1.1E-29 2.5E-34 173.6 5.6 95 6-117 4-99 (189)
18 KOG0420 Ubiquitin-protein liga 100.0 1.3E-28 2.9E-33 168.6 6.2 98 4-117 27-127 (184)
19 KOG0423 Ubiquitin-protein liga 99.9 8.8E-27 1.9E-31 160.1 3.9 99 5-117 10-108 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 1.6E-23 3.5E-28 150.9 8.3 101 3-117 9-109 (314)
21 KOG0895 Ubiquitin-conjugating 99.7 1.8E-17 3.8E-22 138.0 5.8 102 8-116 854-957 (1101)
22 KOG0895 Ubiquitin-conjugating 99.6 2.8E-15 6.1E-20 125.1 9.9 104 4-114 281-387 (1101)
23 KOG0429 Ubiquitin-conjugating 99.6 1E-14 2.3E-19 104.0 8.2 86 8-95 22-110 (258)
24 KOG0896 Ubiquitin-conjugating 99.5 4.9E-14 1.1E-18 93.5 5.8 106 1-117 1-110 (138)
25 KOG0897 Predicted ubiquitin-co 98.5 2.4E-08 5.2E-13 64.8 1.0 51 55-117 13-64 (122)
26 PF08694 UFC1: Ubiquitin-fold 98.4 6.7E-08 1.5E-12 65.1 1.4 82 6-94 25-117 (161)
27 PF14461 Prok-E2_B: Prokaryoti 98.3 9.5E-07 2.1E-11 59.3 4.2 41 51-91 34-77 (133)
28 KOG3357 Uncharacterized conser 98.0 7.9E-06 1.7E-10 54.5 3.6 81 7-94 29-120 (167)
29 PF05743 UEV: UEV domain; Int 97.9 1.7E-05 3.7E-10 52.6 3.5 56 35-94 32-94 (121)
30 KOG2391 Vacuolar sorting prote 97.0 0.0024 5.2E-08 48.9 6.5 57 34-94 51-114 (365)
31 PF05773 RWD: RWD domain; Int 96.8 0.0091 2E-07 37.9 6.7 69 8-78 4-74 (113)
32 smart00591 RWD domain in RING 96.2 0.047 1E-06 34.3 7.5 27 51-77 39-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 95.5 0.15 3.2E-06 33.9 7.5 89 23-115 12-105 (122)
34 PF14457 Prok-E2_A: Prokaryoti 91.3 0.15 3.2E-06 35.5 2.0 40 56-95 56-103 (162)
35 KOG4018 Uncharacterized conser 88.0 2.4 5.2E-05 30.8 6.0 62 10-75 7-71 (215)
36 KOG0309 Conserved WD40 repeat- 86.8 4.6 0.0001 34.7 7.8 68 7-77 422-491 (1081)
37 PF09765 WD-3: WD-repeat regio 77.6 7.2 0.00016 29.6 5.4 59 8-76 102-160 (291)
38 PF14460 Prok-E2_D: Prokaryoti 77.0 1.3 2.7E-05 31.0 1.0 21 75-95 89-112 (175)
39 smart00340 HALZ homeobox assoc 68.8 5.2 0.00011 21.6 2.0 15 6-20 20-34 (44)
40 TIGR03737 PRTRC_B PRTRC system 64.3 3.8 8.2E-05 30.1 1.2 20 76-95 131-153 (228)
41 PF06113 BRE: Brain and reprod 57.5 18 0.00039 28.1 3.9 25 52-76 305-329 (333)
42 KOG4445 Uncharacterized conser 55.8 16 0.00036 28.1 3.4 25 53-77 45-69 (368)
43 cd00421 intradiol_dioxygenase 54.8 23 0.00049 23.9 3.7 25 52-76 65-90 (146)
44 PRK11700 hypothetical protein; 52.9 82 0.0018 22.5 9.2 92 3-94 49-174 (187)
45 KOG3285 Spindle assembly check 51.5 35 0.00075 24.3 4.2 42 5-47 119-160 (203)
46 PF06113 BRE: Brain and reprod 50.3 28 0.0006 27.1 3.9 40 37-82 55-95 (333)
47 cd03457 intradiol_dioxygenase_ 49.0 31 0.00067 24.5 3.7 26 52-77 86-111 (188)
48 PF00845 Gemini_BL1: Geminivir 48.4 59 0.0013 24.4 5.1 48 34-81 101-156 (276)
49 cd03459 3,4-PCD Protocatechuat 45.0 40 0.00087 23.2 3.7 25 52-76 72-101 (158)
50 cd05845 Ig2_L1-CAM_like Second 41.5 84 0.0018 19.6 4.5 26 50-77 16-41 (95)
51 smart00107 BTK Bruton's tyrosi 40.9 12 0.00026 19.4 0.5 17 78-94 7-24 (36)
52 PF04881 Adeno_GP19K: Adenovir 39.9 33 0.00072 23.1 2.5 32 30-61 42-74 (139)
53 PF14455 Metal_CEHH: Predicted 38.6 44 0.00095 23.3 3.0 65 8-77 8-76 (177)
54 PF12065 DUF3545: Protein of u 38.0 26 0.00056 20.3 1.6 14 6-19 35-48 (59)
55 PF00779 BTK: BTK motif; Inte 36.6 11 0.00023 19.1 -0.1 17 78-94 2-19 (32)
56 PF03366 YEATS: YEATS family; 36.0 1E+02 0.0023 18.8 5.0 40 36-77 2-41 (84)
57 TIGR02423 protocat_alph protoc 33.5 70 0.0015 22.8 3.6 25 52-76 96-125 (193)
58 KOG3696 Aspartyl beta-hydroxyl 30.9 1.3E+02 0.0028 23.4 4.7 40 49-88 283-328 (334)
59 cd03463 3,4-PCD_alpha Protocat 30.7 84 0.0018 22.2 3.6 24 53-76 93-121 (185)
60 PF06305 DUF1049: Protein of u 29.3 58 0.0013 18.5 2.2 17 4-20 47-63 (68)
61 KOG1047 Bifunctional leukotrie 24.2 82 0.0018 26.4 2.8 29 48-77 248-279 (613)
62 KOG1814 Predicted E3 ubiquitin 23.9 79 0.0017 25.4 2.6 21 56-76 77-98 (445)
63 PF09458 H_lectin: H-type lect 23.0 1.3E+02 0.0029 17.1 3.0 22 54-76 2-23 (72)
64 PF09606 Med15: ARC105 or Med1 22.6 29 0.00062 30.2 0.0 25 53-77 714-738 (799)
65 COG3140 Uncharacterized protei 21.6 1.7E+02 0.0036 16.8 3.0 25 1-25 28-52 (60)
66 cd03464 3,4-PCD_beta Protocate 20.7 1.6E+02 0.0036 21.4 3.6 25 52-76 122-153 (220)
67 TIGR02439 catechol_proteo cate 20.4 1.6E+02 0.0035 22.4 3.6 25 52-76 180-222 (285)
68 COG2819 Predicted hydrolase of 20.2 1.8E+02 0.004 21.9 3.9 30 48-77 16-47 (264)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=241.51 Aligned_cols=104 Identities=52% Similarity=1.036 Sum_probs=99.8
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcc
Q 033528 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (117)
Q Consensus 1 Mas~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~H 80 (117)
|++..+.+||++|++++++++++++++.+.+++|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 77777999999999999999999999999865699999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
|||+++|+|||++|+ ++|+|+++|
T Consensus 81 PNV~~~G~vCLdIL~-------------~~WsP~~~l 104 (153)
T COG5078 81 PNVDPSGNVCLDILK-------------DRWSPVYTL 104 (153)
T ss_pred CCcCCCCCChhHHHh-------------CCCCccccH
Confidence 999999999999997 999999985
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-42 Score=231.28 Aligned_cols=98 Identities=44% Similarity=0.990 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCC
Q 033528 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (117)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~ 85 (117)
+.+||.||++++++++++||.+.+. ++|++.|+++|.||.+||||||+|++.|.||++||++||+|+|+|+||||||++
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 3469999999999999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 86 DGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
.|.|||+||+ +.|+|+.||
T Consensus 81 ~G~IclDILk-------------~~WsPAl~i 99 (148)
T KOG0417|consen 81 NGRICLDILK-------------DQWSPALTI 99 (148)
T ss_pred cccchHHhhh-------------ccCChhhHH
Confidence 9999999997 889999875
No 3
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-41 Score=225.27 Aligned_cols=117 Identities=75% Similarity=1.383 Sum_probs=114.0
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcc
Q 033528 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (117)
Q Consensus 1 Mas~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~H 80 (117)
|+++++...|+++|++|++++.+|+.+..+|++|+++|.|.|+||++|+|+||.|+..+.||++||.+||+++|.|+|||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 77888999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
||||++|.+|++||.+++.++++|++..+.|+|.+|+
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tv 117 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTV 117 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccch
Confidence 9999999999999999999999999999999999885
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=214.60 Aligned_cols=101 Identities=47% Similarity=0.936 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccc
Q 033528 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (117)
Q Consensus 3 s~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPn 82 (117)
+..|.+||.+|++.++++++.||+..|+ ++|++.|.++|.||++|||+||+|++.|.|+++||.+||.|+|++.+||||
T Consensus 2 stpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 3489999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
||++|.+||++|+ ..|+|+|+|
T Consensus 81 vya~G~iClDiLq-------------NrWsp~Ydv 102 (152)
T KOG0419|consen 81 VYADGSICLDILQ-------------NRWSPTYDV 102 (152)
T ss_pred cCCCCcchHHHHh-------------cCCCCchhH
Confidence 9999999999997 899999975
No 5
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-39 Score=211.63 Aligned_cols=116 Identities=58% Similarity=1.098 Sum_probs=112.0
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcc
Q 033528 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (117)
Q Consensus 1 Mas~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~H 80 (117)
|+ ..++|||.+||+++..++++||.+.|.+++|++.|.+.|.||++|+|+||.|-.++.||.+||.+||+++|...+||
T Consensus 1 m~-~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH 79 (165)
T KOG0426|consen 1 MA-GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH 79 (165)
T ss_pred Cc-hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence 44 37999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
|||+++|+||++||..++.++.+|+++.+.|+|..+|
T Consensus 80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSv 116 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSV 116 (165)
T ss_pred CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHH
Confidence 9999999999999999999999999999999998764
No 6
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=5.5e-38 Score=215.58 Aligned_cols=98 Identities=32% Similarity=0.760 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCC
Q 033528 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (117)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~ 85 (117)
+.+||++|++++++++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 5799999999999999999999996 789999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 86 DGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
+|.||+++|. ++|+|++||
T Consensus 82 ~G~iCl~iL~-------------~~W~p~~ti 100 (152)
T PTZ00390 82 LGRICLDILK-------------DKWSPALQI 100 (152)
T ss_pred CCeEECccCc-------------ccCCCCCcH
Confidence 9999999996 899999985
No 7
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-37 Score=213.17 Aligned_cols=97 Identities=44% Similarity=0.948 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCCC
Q 033528 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD 86 (117)
Q Consensus 7 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~ 86 (117)
.+||++|++++++++++++.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 589999999999999999999996 7899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 87 GKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
|.||+++|. ++|+|++||
T Consensus 82 G~iCl~il~-------------~~W~p~~ti 99 (147)
T PLN00172 82 GSICLDILR-------------DQWSPALTV 99 (147)
T ss_pred CEEEcccCc-------------CCCCCcCcH
Confidence 999999997 899999985
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.8e-35 Score=198.59 Aligned_cols=97 Identities=48% Similarity=1.011 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCCCCc
Q 033528 9 LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGK 88 (117)
Q Consensus 9 RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~G~ 88 (117)
||++|+++++++++.|+.+.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+|+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999984349999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 89 VCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 89 iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
||+++|. .+.|+|+++|
T Consensus 81 icl~~l~------------~~~W~p~~~i 97 (140)
T PF00179_consen 81 ICLDILN------------PESWSPSYTI 97 (140)
T ss_dssp BGHGGGT------------TTTC-TTSHH
T ss_pred chhhhhh------------cccCCccccc
Confidence 9999997 3569999874
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=198.62 Aligned_cols=98 Identities=37% Similarity=0.789 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhhCC---CCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccc
Q 033528 6 ASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (117)
Q Consensus 6 ~~~RL~~E~~~l~~~~---~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPn 82 (117)
+.+||++|++++.+++ ..||.+... ++|+.+..+.|.||++|||+||.|.+.|.+|++||++||+|+|.|+|||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~v-n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn 82 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMV-NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN 82 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEc-cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence 8999999999999988 688999998 689999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 83 VYP-DGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 83 v~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
|++ +|.|||++|+ +.|++++||
T Consensus 83 VSs~tGaICLDilk-------------d~Wa~slTl 105 (200)
T KOG0418|consen 83 VSSQTGAICLDILK-------------DQWAASLTL 105 (200)
T ss_pred CCcccccchhhhhh-------------cccchhhhH
Confidence 977 8999999997 999999985
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.4e-33 Score=191.17 Aligned_cols=97 Identities=53% Similarity=0.998 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCCCC
Q 033528 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87 (117)
Q Consensus 8 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~G 87 (117)
+||++|++++++++..|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.++++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 79999999999999999999996 67999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 88 KVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
.||+++|. .++|+|+++|
T Consensus 81 ~icl~~l~------------~~~W~p~~~l 98 (141)
T cd00195 81 KICLSILK------------THGWSPAYTL 98 (141)
T ss_pred CCchhhcC------------CCCcCCcCcH
Confidence 99999997 2359999874
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=191.45 Aligned_cols=101 Identities=39% Similarity=0.742 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccc
Q 033528 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (117)
Q Consensus 3 s~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPn 82 (117)
.+...|||++||..|+....+||++.|. ++|++.|.++|+||++|+|+|..|++.+.||.+||++||.|+|+|+.||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPN 105 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPN 105 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCC
Confidence 4567899999999999999999999996 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
|+..|.|||+||+ +.|+..|+|
T Consensus 106 VD~~GnIcLDILk-------------dKWSa~YdV 127 (175)
T KOG0421|consen 106 VDLSGNICLDILK-------------DKWSAVYDV 127 (175)
T ss_pred ccccccchHHHHH-------------HHHHHHHhH
Confidence 9999999999997 999988864
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-33 Score=186.68 Aligned_cols=104 Identities=38% Similarity=0.769 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCCC----CcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCC
Q 033528 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDES----NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78 (117)
Q Consensus 3 s~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~----~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i 78 (117)
|..++.||+.|-+.+.++.+-|+.+.|.... |++.|.+.|.|+++|+||||.|.+++.||++||++||+++|.+++
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl 81 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL 81 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence 4478999999999999999999999886443 689999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 79 WHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 79 ~HPnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
||||||++|.|||+||.. ..+|+|+.||
T Consensus 82 ~HPNVypsgtVcLsiL~e-----------~~~W~paiti 109 (158)
T KOG0424|consen 82 FHPNVYPSGTVCLSILNE-----------EKDWRPAITI 109 (158)
T ss_pred cCCCcCCCCcEehhhhcc-----------ccCCCchhhH
Confidence 999999999999999972 2359999885
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.98 E-value=3.7e-32 Score=184.99 Aligned_cols=98 Identities=47% Similarity=0.979 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCCCC
Q 033528 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87 (117)
Q Consensus 8 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~G 87 (117)
+||++|+++++++.++|+.+.+.+++|++.|+++|.||++|+|+||.|++.|.||++||++||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 59999999999999999999887445999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 88 KVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
.||+++|. .++|+|+++|
T Consensus 81 ~icl~~l~------------~~~W~p~~~l 98 (145)
T smart00212 81 EICLDILK------------QEKWSPATTL 98 (145)
T ss_pred CEehhhcC------------CCCCCCCCcH
Confidence 99999996 3789999874
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-30 Score=170.64 Aligned_cols=99 Identities=33% Similarity=0.774 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCC-cccc
Q 033528 4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-WHPN 82 (117)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i-~HPn 82 (117)
..+.+||+||+.+++.+++.|+..... +|+..|.+.+.|.+||.|+|.+|.+.+.||+.||++.|+|.|..++ .||+
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v~--dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPH 91 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRVT--DNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPH 91 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeecc--cchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCc
Confidence 467899999999999999999999864 7999999999999999999999999999999999999999999986 8999
Q ss_pred cCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
||+||.|||++|. +.|+|+++|
T Consensus 92 iYSNGHICL~iL~-------------d~WsPAmsv 113 (161)
T KOG0427|consen 92 IYSNGHICLDILY-------------DSWSPAMSV 113 (161)
T ss_pred eecCCeEEEEeec-------------ccCCcchhh
Confidence 9999999999997 999999875
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-31 Score=174.66 Aligned_cols=98 Identities=38% Similarity=0.767 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCC
Q 033528 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (117)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~ 85 (117)
+.+||.||+++++++....+.-...+++|++.|++.|. |++-||..|.|+++|.||.+|||+||.|.|.|+||||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 68999999999999988776655567889999999998 99999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCcccccC
Q 033528 86 DGKVCISILHPPGDDPNGYELATERWTPVHT 116 (117)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~ 116 (117)
.|.||+.++. +++|.|+.+
T Consensus 82 ~gqvClPiis------------~EnWkP~T~ 100 (153)
T KOG0422|consen 82 KGQVCLPIIS------------AENWKPATR 100 (153)
T ss_pred CCceeeeeee------------cccccCccc
Confidence 9999999998 699999875
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-30 Score=182.50 Aligned_cols=104 Identities=33% Similarity=0.676 Sum_probs=94.8
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcc
Q 033528 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (117)
Q Consensus 1 Mas~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~H 80 (117)
||+..|.+||+|||+.|.+++.++|.+.|. ++||.+||.+|.||++|||+||.|+.++.||.+||++||.|++.|+ +
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--N 77 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--N 77 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--C
Confidence 899999999999999999999999999996 9999999999999999999999999999999999999999999995 1
Q ss_pred cccCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
..+-.+-++||++.+ || .+.|+|+++|
T Consensus 78 GRFktntRLCLSiSD------fH----PdsWNP~WsV 104 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISD------FH----PDSWNPGWSV 104 (244)
T ss_pred CceecCceEEEeccc------cC----cCcCCCcccH
Confidence 123446789999987 66 6999999975
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=173.61 Aligned_cols=95 Identities=26% Similarity=0.718 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCC
Q 033528 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (117)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~ 85 (117)
..||+..|+.+|... +..+... ++++.+++|.+.||+++||+||.++++|.+|++||++.|+|.|+++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~i-nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTII-NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEe-cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 678999999999775 4677776 678999999999999999999999999999999999999999999999999998
Q ss_pred -CCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 86 -DGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
+|.|||+.+. +.|+|.|++
T Consensus 80 ~SGsVCLDViN-------------QtWSp~yDL 99 (189)
T KOG0416|consen 80 ASGSVCLDVIN-------------QTWSPLYDL 99 (189)
T ss_pred ccCccHHHHHh-------------hhhhHHHHH
Confidence 8999999998 899998863
No 18
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-28 Score=168.58 Aligned_cols=98 Identities=35% Similarity=0.693 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCcce--EEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcc
Q 033528 4 SQASLLLQKQLKDLCKNPVDGFSAGLVD-ESNVFE--WSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (117)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~~i~~~~~~-~~~~~~--w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~H 80 (117)
+.+..||++|+.++ +.+++++....+ .++++. ++++|. |++|.|+||.|.|.+.+|+.||++||+|+|+|+|||
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 46677888887776 455566543333 455555 999998 999999999999999999999999999999999999
Q ss_pred cccCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
|||+.+|.|||+||+ ++|+|+.+|
T Consensus 104 PNId~~GnVCLnILR-------------edW~P~lnL 127 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILR-------------EDWRPVLNL 127 (184)
T ss_pred CCcCCcchHHHHHHH-------------hcCccccch
Confidence 999999999999998 999999875
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.8e-27 Score=160.07 Aligned_cols=99 Identities=30% Similarity=0.640 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccC
Q 033528 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY 84 (117)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~ 84 (117)
-.++.|.||++.+...++.||.|.+. ++|+...++.|.||.+|||++|.|++.+.+..+||.+||+-.|+|+||||||.
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 35688999999999999999999985 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 85 PDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
.||+||++.|+ .+|+|...|
T Consensus 89 aNGEICVNtLK-------------kDW~p~LGi 108 (223)
T KOG0423|consen 89 ANGEICVNTLK-------------KDWNPSLGI 108 (223)
T ss_pred cCceehhhhhh-------------cccCcccch
Confidence 99999999997 999998764
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-23 Score=150.94 Aligned_cols=101 Identities=34% Similarity=0.711 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccc
Q 033528 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (117)
Q Consensus 3 s~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPn 82 (117)
++.+.|||.||.++++ ++...+.+.+. ++|+++|+++|.||.+|-|+||+||.+|.||.+||++||.+..+|+ +..
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGR 84 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGR 84 (314)
T ss_pred cCHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCc
Confidence 3678999999999997 77777888898 8999999999999999999999999999999999999999999994 112
Q ss_pred cCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 83 v~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
+--+.+|||+|.. +| .+.|.|+++|
T Consensus 85 FE~nkKiCLSISg------yH----PEtWqPSWSi 109 (314)
T KOG0428|consen 85 FEVNKKICLSISG------YH----PETWQPSWSI 109 (314)
T ss_pred eeeCceEEEEecC------CC----ccccCcchhH
Confidence 3447789999985 55 5899999875
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.8e-17 Score=138.04 Aligned_cols=102 Identities=32% Similarity=0.537 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecC--CcccccCC
Q 033528 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE--MWHPNVYP 85 (117)
Q Consensus 8 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~--i~HPnv~~ 85 (117)
+..+.|++-+..+.+.||.+... ++.+....+.|.|+.+|||.+|.|.|.|.||++||..||.|...+. .++||.|.
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~ 932 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE 932 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence 44556677777888999999886 8888888999999999999999999999999999999999999987 58999999
Q ss_pred CCcEEeecCCCCCCCCCCCCCCCCCcccccC
Q 033528 86 DGKVCISILHPPGDDPNGYELATERWTPVHT 116 (117)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~ 116 (117)
+|+|||++|. ++.|...+-|+|+-|
T Consensus 933 ~g~vc~s~l~------tw~g~~~e~w~~~s~ 957 (1101)
T KOG0895|consen 933 DGKVCLSLLN------TWHGRGNEVWNPSSS 957 (1101)
T ss_pred ccceehhhhc------cccCCCccccCcchh
Confidence 9999999997 777888999999654
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.8e-15 Score=125.09 Aligned_cols=104 Identities=37% Similarity=0.586 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecC---Ccc
Q 033528 4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE---MWH 80 (117)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~---i~H 80 (117)
....+|+++|++-+.++.++|+.+.+. +..+...++.|.||.++||++|.|.|.|.||..||..||.|.+++. .+.
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~n 359 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLN 359 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCcccccc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeec
Confidence 346789999999999999999999886 8899999999999999999999999999999999999999999998 589
Q ss_pred cccCCCCcEEeecCCCCCCCCCCCCCCCCCcccc
Q 033528 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPV 114 (117)
Q Consensus 81 Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~ 114 (117)
||.|.+|+||+++|-. .-+...+.|+|.
T Consensus 360 PNlYn~GKVcLslLgT------wtg~~~e~wtp~ 387 (1101)
T KOG0895|consen 360 PNLYNDGKVCLSLLGT------WTGSRREKWTPN 387 (1101)
T ss_pred CCcccCceEEeeeeee------cccccccCCCcc
Confidence 9999999999999962 112234889887
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1e-14 Score=103.97 Aligned_cols=86 Identities=24% Similarity=0.481 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCC--CCCEEEEecCCcccccCC
Q 033528 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPV--SPPTVRFTSEMWHPNVYP 85 (117)
Q Consensus 8 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~--~pP~v~f~t~i~HPnv~~ 85 (117)
..|+.|+..+.+.+.+||.+.|. -.|-+.|.++|+ -..|.|.||.|+|+|.+|++||. .-|+|.|.+.+|||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPS-yan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPS-YANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHhccCCceEEccc-ccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 46788999999999999999997 789999999999 56679999999999999999995 479999999999999988
Q ss_pred -CCcEEeecCC
Q 033528 86 -DGKVCISILH 95 (117)
Q Consensus 86 -~G~iCl~~l~ 95 (117)
++.+|++-.-
T Consensus 100 ~skeLdl~raf 110 (258)
T KOG0429|consen 100 KSKELDLNRAF 110 (258)
T ss_pred CccceeHhhhh
Confidence 8999997653
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.9e-14 Score=93.49 Aligned_cols=106 Identities=31% Similarity=0.525 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCC-eEEEecCCCCc--ceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecC
Q 033528 1 MAKSQASLLLQKQLKDLCKNPVDG-FSAGLVDESNV--FEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (117)
Q Consensus 1 Mas~~~~~RL~~E~~~l~~~~~~~-i~~~~~~~~~~--~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~ 77 (117)
|+...+..||.+|+.+-++-..++ ++....|.+|+ ..|..+|.||+.|+||+..|.++|..-++||..||.|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 455567789999999988776666 55555544554 489999999999999999999999999999999999999999
Q ss_pred CcccccCC-CCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 78 i~HPnv~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
+--..|+. +|.|.-..+.. ..+|+-.|++
T Consensus 81 inm~gvn~~~g~Vd~~~i~~-----------L~~W~~~y~~ 110 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITV-----------LARWQRSYSI 110 (138)
T ss_pred eeecccccCCCccCccccch-----------hhcccccchh
Confidence 97777766 67776644432 2677766653
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.4e-08 Score=64.84 Aligned_cols=51 Identities=25% Similarity=0.555 Sum_probs=41.7
Q ss_pred EEEEEecCCCCCCCCCEEEEecCCcc-cccCCCCcEEeecCCCCCCCCCCCCCCCCCcccccCC
Q 033528 55 FNAIMTFPDNYPVSPPTVRFTSEMWH-PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117 (117)
Q Consensus 55 f~~~i~~p~~YP~~pP~v~f~t~i~H-Pnv~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~i 117 (117)
..+.+.|+++||+.||.++...++.. ..|-.+|.||+.+|+ +++|+++|+|
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt------------~qgwssay~V 64 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT------------KQGWSSAYEV 64 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc------------cccccchhhH
Confidence 34567899999999999998886432 345668999999998 6999999975
No 26
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.45 E-value=6.7e-08 Score=65.14 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCC----------cEEEEEEecCCCCCCCCCEEEEe
Q 033528 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEG----------GFFNAIMTFPDNYPVSPPTVRFT 75 (117)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g----------~~f~~~i~~p~~YP~~pP~v~f~ 75 (117)
=.+||+.||+.|.+. ...++++-..|.-.-.-+++|-|.| -.|.+++.+|..||..||.|...
T Consensus 25 W~~RLKEEy~aLI~Y-------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 25 WVQRLKEEYQALIKY-------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHH-------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 357999999998441 1111223334443334455555555 34677888899999999999876
Q ss_pred cCC-cccccCCCCcEEeecC
Q 033528 76 SEM-WHPNVYPDGKVCISIL 94 (117)
Q Consensus 76 t~i-~HPnv~~~G~iCl~~l 94 (117)
.-- -..-.|.+|+|||+.-
T Consensus 98 eLdGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp GGTTT-SSBCCCCBB---TT
T ss_pred ccCCchhhhhcCceEeeecc
Confidence 521 1234677999999863
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.30 E-value=9.5e-07 Score=59.32 Aligned_cols=41 Identities=39% Similarity=0.812 Sum_probs=37.8
Q ss_pred CCcEEEEEEecCCCCCCCCCEEEEecCC---cccccCCCCcEEe
Q 033528 51 EGGFFNAIMTFPDNYPVSPPTVRFTSEM---WHPNVYPDGKVCI 91 (117)
Q Consensus 51 ~g~~f~~~i~~p~~YP~~pP~v~f~t~i---~HPnv~~~G~iCl 91 (117)
.|+.+.+.|.+|++||..||.|....+- +=|||+.+|.+|+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl 77 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCL 77 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEE
Confidence 6899999999999999999999988754 5799999999999
No 28
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=7.9e-06 Score=54.53 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCc----------EEEEEEecCCCCCCCCCEEEEec
Q 033528 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYPVSPPTVRFTS 76 (117)
Q Consensus 7 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~----------~f~~~i~~p~~YP~~pP~v~f~t 76 (117)
.+||+.||+.+.+ +...++++-..|.-.-..+++|-|-|. .|.+++.+|-.||..+|.|....
T Consensus 29 vqrlkeey~sli~-------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpe 101 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA-------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPE 101 (167)
T ss_pred HHHHHHHHHHHHH-------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccc
Confidence 5799999999843 222234455566666666888888774 46778888999999999997643
Q ss_pred CC-cccccCCCCcEEeecC
Q 033528 77 EM-WHPNVYPDGKVCISIL 94 (117)
Q Consensus 77 ~i-~HPnv~~~G~iCl~~l 94 (117)
-- -.--.+.+|+|||.--
T Consensus 102 ldgktakmyrggkiclt~h 120 (167)
T KOG3357|consen 102 LDGKTAKMYRGGKICLTDH 120 (167)
T ss_pred cCchhhhhhcCceEeeccc
Confidence 11 1123567999999653
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.85 E-value=1.7e-05 Score=52.56 Aligned_cols=56 Identities=29% Similarity=0.472 Sum_probs=38.2
Q ss_pred cceEEEEEeCCCCCCCCCcEEE--EEEecCCCCCCCCCEEEEecCC-----cccccCCCCcEEeecC
Q 033528 35 VFEWSVSIIGPPDTLYEGGFFN--AIMTFPDNYPVSPPTVRFTSEM-----WHPNVYPDGKVCISIL 94 (117)
Q Consensus 35 ~~~w~~~i~gp~~t~y~g~~f~--~~i~~p~~YP~~pP~v~f~t~i-----~HPnv~~~G~iCl~~l 94 (117)
+....++|. -.|+|..|. +.|-+|++||.+||.|...-.. -+.+|+++|+|.+..|
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL 94 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL 94 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh
Confidence 445555553 357888875 5566899999999999775432 2449999999999999
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0024 Score=48.93 Aligned_cols=57 Identities=28% Similarity=0.469 Sum_probs=43.2
Q ss_pred CcceEEEEEeCCCCCCCCCcEEEEEEe--cCCCCCCCCCEEEEecC-----CcccccCCCCcEEeecC
Q 033528 34 NVFEWSVSIIGPPDTLYEGGFFNAIMT--FPDNYPVSPPTVRFTSE-----MWHPNVYPDGKVCISIL 94 (117)
Q Consensus 34 ~~~~w~~~i~gp~~t~y~g~~f~~~i~--~p~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~~l 94 (117)
+++...++|. .+|.|.+|.+-|. +.+.||..||.+...-. --|-+|+.+|+|.|..|
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL 114 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL 114 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh
Confidence 4555555553 4788888876554 79999999999955432 14899999999999999
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.76 E-value=0.0091 Score=37.86 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEe--CCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCC
Q 033528 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSII--GPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78 (117)
Q Consensus 8 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~--gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i 78 (117)
.+.+.|+..|+.--.... ... +..+...+.+.+. ....+.-....+++.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEI-ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSS-TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-ccc-ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 466778888866443333 111 1233445555552 12333445678999999999999999999988754
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.21 E-value=0.047 Score=34.26 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCCCCCCCCEEEEecC
Q 033528 51 EGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (117)
Q Consensus 51 ~g~~f~~~i~~p~~YP~~pP~v~f~t~ 77 (117)
....+.+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999998764
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.48 E-value=0.15 Score=33.92 Aligned_cols=89 Identities=17% Similarity=0.343 Sum_probs=54.2
Q ss_pred CCeEEEecCCCCcceEEEEEeC--CCCCCCCCcEEEEEEecCCCCCCCCCEEEEecCCcccccCCCCcE--EeecCCC-C
Q 033528 23 DGFSAGLVDESNVFEWSVSIIG--PPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKV--CISILHP-P 97 (117)
Q Consensus 23 ~~i~~~~~~~~~~~~w~~~i~g--p~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~G~i--Cl~~l~~-~ 97 (117)
.|+..+.+ .+.-..|.+ |.| .+.+.|....-.+-|.+|..||..+|-+.+..+-.... .+|.| |-+.... .
T Consensus 12 ~g~~~E~v-~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 12 RGLRWETV-TEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFD 87 (122)
T ss_pred cCceEEEE-EeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcC
Confidence 35666665 334455654 544 66778999999999999999999999888777533211 12334 4433211 1
Q ss_pred CCCCCCCCCCCCCccccc
Q 033528 98 GDDPNGYELATERWTPVH 115 (117)
Q Consensus 98 ~~~~~~~~~~~~~W~p~~ 115 (117)
+..=.++|.-...|+|..
T Consensus 88 G~~wQrWSRH~~~W~P~~ 105 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGV 105 (122)
T ss_pred CeeeeeecCCCCCCCCCC
Confidence 221134444467888854
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=91.28 E-value=0.15 Score=35.46 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=30.0
Q ss_pred EEEEecCCCCCCCCCEEEEecCCc---ccccCCC-----CcEEeecCC
Q 033528 56 NAIMTFPDNYPVSPPTVRFTSEMW---HPNVYPD-----GKVCISILH 95 (117)
Q Consensus 56 ~~~i~~p~~YP~~pP~v~f~t~i~---HPnv~~~-----G~iCl~~l~ 95 (117)
.+.|.|+.+||..+|.|.+..+.| +|+++.. ..+||.--.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~ 103 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP 103 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC
Confidence 356789999999999887776643 5777664 679997654
No 35
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.96 E-value=2.4 Score=30.78 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCCCe-EEEecCCCCcceEEEEEeCCCCCCCCC--cEEEEEEecCCCCCCCCCEEEEe
Q 033528 10 LQKQLKDLCKNPVDGF-SAGLVDESNVFEWSVSIIGPPDTLYEG--GFFNAIMTFPDNYPVSPPTVRFT 75 (117)
Q Consensus 10 L~~E~~~l~~~~~~~i-~~~~~~~~~~~~w~~~i~gp~~t~y~g--~~f~~~i~~p~~YP~~pP~v~f~ 75 (117)
...|+..|..--+.-. .+. ..+...+.++|. ...+-+.. +.+.+.+.++++||..+|-|.+.
T Consensus 7 Qe~E~EaLeSIY~de~~~i~---~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHIN---SEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHhccchhhhhh---ccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCcceecc
Confidence 3445555655433333 221 233334666775 33332221 27889999999999999999443
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.77 E-value=4.6 Score=34.75 Aligned_cols=68 Identities=19% Similarity=0.353 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCC-cEEEEEEecCCCCCCC-CCEEEEecC
Q 033528 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEG-GFFNAIMTFPDNYPVS-PPTVRFTSE 77 (117)
Q Consensus 7 ~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g-~~f~~~i~~p~~YP~~-pP~v~f~t~ 77 (117)
.+-|.+|+.-|-. +...+.++..|- .-..-.+.+.+|-.-. .| ...++.|.||.+||.+ +|.+.|..+
T Consensus 422 pQnLgeE~S~Ig~-k~~nV~fEkidv-a~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGV-KIRNVNFEKIDV-ADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhc-cccccceEeecc-ccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3556677766633 234455554422 2345556666655433 33 3457889999999985 899999865
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=77.64 E-value=7.2 Score=29.60 Aligned_cols=59 Identities=15% Similarity=0.322 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEec
Q 033528 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76 (117)
Q Consensus 8 ~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t 76 (117)
.+|.+|+.++..+.. +.+.. ++++....+.+. +. .....++|.++.+||.++|.+...-
T Consensus 102 s~ll~EIe~IGW~kl--~~i~~--d~~ls~i~l~~~--D~----~R~H~l~l~l~~~yp~~~p~~~~~~ 160 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKL--VQIQF--DDDLSTIKLKIF--DS----SRQHYLELKLPSNYPFEPPSCSLDL 160 (291)
T ss_dssp -CHHHHHHHHHCGCC--EEEEE---CCCSEEEEEEE--TT----CEEEEEEEETTTTTTTSEEEECS-T
T ss_pred HHHHHHHHHhccccc--eEEec--CCCccEEEEEEE--cC----CceEEEEEEECCCCCCCCceeeCCC
Confidence 578888888876553 33322 357788888876 21 2677889999999999999765444
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=76.99 E-value=1.3 Score=31.03 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=16.2
Q ss_pred ecCCcc---cccCCCCcEEeecCC
Q 033528 75 TSEMWH---PNVYPDGKVCISILH 95 (117)
Q Consensus 75 ~t~i~H---Pnv~~~G~iCl~~l~ 95 (117)
.|++|| +||+.+|+||+.-..
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~ 112 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS 112 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc
Confidence 345676 599999999997754
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=68.79 E-value=5.2 Score=21.60 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhC
Q 033528 6 ASLLLQKQLKDLCKN 20 (117)
Q Consensus 6 ~~~RL~~E~~~l~~~ 20 (117)
..+||++|++++...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999764
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=64.34 E-value=3.8 Score=30.09 Aligned_cols=20 Identities=20% Similarity=0.659 Sum_probs=15.0
Q ss_pred cCCcc---cccCCCCcEEeecCC
Q 033528 76 SEMWH---PNVYPDGKVCISILH 95 (117)
Q Consensus 76 t~i~H---Pnv~~~G~iCl~~l~ 95 (117)
|++|| .||+.+|+||+.-.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~ 153 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR 153 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc
Confidence 34666 499999999997643
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=57.49 E-value=18 Score=28.10 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCCCCCCCEEEEec
Q 033528 52 GGFFNAIMTFPDNYPVSPPTVRFTS 76 (117)
Q Consensus 52 g~~f~~~i~~p~~YP~~pP~v~f~t 76 (117)
+-.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 4558889999999999999999987
No 42
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=55.84 E-value=16 Score=28.11 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCCCCCCCEEEEecC
Q 033528 53 GFFNAIMTFPDNYPVSPPTVRFTSE 77 (117)
Q Consensus 53 ~~f~~~i~~p~~YP~~pP~v~f~t~ 77 (117)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5678899999999999999999876
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=54.82 E-value=23 Score=23.86 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCCC-CCCCEEEEec
Q 033528 52 GGFFNAIMTFPDNYP-VSPPTVRFTS 76 (117)
Q Consensus 52 g~~f~~~i~~p~~YP-~~pP~v~f~t 76 (117)
.|.|.|.-.+|-.|| ..||-|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999998875
No 44
>PRK11700 hypothetical protein; Provisional
Probab=52.94 E-value=82 Score=22.50 Aligned_cols=92 Identities=18% Similarity=0.370 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHh----hCCCCC--eEEEecC-CCCcceEEEEE---eCCCCCCC-CCcEEEEEEecC---------
Q 033528 3 KSQASLLLQKQLKDLC----KNPVDG--FSAGLVD-ESNVFEWSVSI---IGPPDTLY-EGGFFNAIMTFP--------- 62 (117)
Q Consensus 3 s~~~~~RL~~E~~~l~----~~~~~~--i~~~~~~-~~~~~~w~~~i---~gp~~t~y-~g~~f~~~i~~p--------- 62 (117)
+....+|+.+.+.+.- .+...| |.+.-.+ +=....|.+.+ .=|.+.-| ..|.=|+++++|
T Consensus 49 ~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~ 128 (187)
T PRK11700 49 QNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDAR 128 (187)
T ss_pred CHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHH
Confidence 3456677777776643 234444 4444432 22455676543 33655555 468889999998
Q ss_pred -----CCCCCCCCEEEEec--------CCccccc-CCCCcEEeecC
Q 033528 63 -----DNYPVSPPTVRFTS--------EMWHPNV-YPDGKVCISIL 94 (117)
Q Consensus 63 -----~~YP~~pP~v~f~t--------~i~HPnv-~~~G~iCl~~l 94 (117)
.+.+..++-|++.. +.-+|-| ..+|.||+.+-
T Consensus 129 ~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~H 174 (187)
T PRK11700 129 ALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFH 174 (187)
T ss_pred HHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEc
Confidence 23344455555554 3556666 45899999764
No 45
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.55 E-value=35 Score=24.35 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCcceEEEEEeCCCC
Q 033528 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPD 47 (117)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~~i~~~~~~~~~~~~w~~~i~gp~~ 47 (117)
...+|+++|++.+.++.-..++..|. -+....+.+.+..-++
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~-Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPL-LEEICTFDVLIYTDKD 160 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeeccc-ccceeEEEEEEEeCCC
Confidence 45789999999999998888888886 5566788887764443
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=50.31 E-value=28 Score=27.08 Aligned_cols=40 Identities=25% Similarity=0.551 Sum_probs=32.8
Q ss_pred eEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecC-Ccccc
Q 033528 37 EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPN 82 (117)
Q Consensus 37 ~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~-i~HPn 82 (117)
.+.+.| ||.|...+-+|.|...||..||-+.|... -|+|-
T Consensus 55 RF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 55 RFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 455555 78999999999999999999999999743 47773
No 47
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=49.04 E-value=31 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCCCCCCCEEEEecC
Q 033528 52 GGFFNAIMTFPDNYPVSPPTVRFTSE 77 (117)
Q Consensus 52 g~~f~~~i~~p~~YP~~pP~v~f~t~ 77 (117)
.|.|.|.-.+|--||..+|-|.|.-.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V~ 111 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKVH 111 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEEE
Confidence 48899999999999999999988763
No 48
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=48.43 E-value=59 Score=24.37 Aligned_cols=48 Identities=15% Similarity=0.361 Sum_probs=31.0
Q ss_pred CcceEEEEEeCCCCCCCCC---cEEEEEEecC-----CCCCCCCCEEEEecCCccc
Q 033528 34 NVFEWSVSIIGPPDTLYEG---GFFNAIMTFP-----DNYPVSPPTVRFTSEMWHP 81 (117)
Q Consensus 34 ~~~~w~~~i~gp~~t~y~g---~~f~~~i~~p-----~~YP~~pP~v~f~t~i~HP 81 (117)
|..-|.+.....+....+| ..|+.++.+. .|-||+||+|+.+++-|..
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 4445666655333333444 3456666664 5889999999999997654
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=45.01 E-value=40 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCCC-----CCCCEEEEec
Q 033528 52 GGFFNAIMTFPDNYP-----VSPPTVRFTS 76 (117)
Q Consensus 52 g~~f~~~i~~p~~YP-----~~pP~v~f~t 76 (117)
.|.|.|+-.+|--|| ..||-|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 7999998875
No 50
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=41.45 E-value=84 Score=19.63 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.0
Q ss_pred CCCcEEEEEEecCCCCCCCCCEEEEecC
Q 033528 50 YEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (117)
Q Consensus 50 y~g~~f~~~i~~p~~YP~~pP~v~f~t~ 77 (117)
-+|..+.|.-.-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35778888888889999 589998865
No 51
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=40.86 E-value=12 Score=19.39 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=12.3
Q ss_pred CcccccCCCCc-EEeecC
Q 033528 78 MWHPNVYPDGK-VCISIL 94 (117)
Q Consensus 78 i~HPnv~~~G~-iCl~~l 94 (117)
-|||.++.+|+ .|-.-.
T Consensus 7 ~yHP~~~~~G~W~CC~q~ 24 (36)
T smart00107 7 KYHPSFWVDGKWLCCQQS 24 (36)
T ss_pred ccCCCceeCCeEccCCCc
Confidence 38999998887 565433
No 52
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=39.88 E-value=33 Score=23.06 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=23.5
Q ss_pred cCCCCcceEEEEEeCCCCCCCC-CcEEEEEEec
Q 033528 30 VDESNVFEWSVSIIGPPDTLYE-GGFFNAIMTF 61 (117)
Q Consensus 30 ~~~~~~~~w~~~i~gp~~t~y~-g~~f~~~i~~ 61 (117)
..+.|...|.|++.|++|++.. ..+|-+.+.|
T Consensus 42 WqPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 42 WQPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred ccCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 3466788899999999998874 4555555555
No 53
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=38.56 E-value=44 Score=23.26 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhCC----CCCeEEEecCCCCcceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecC
Q 033528 8 LLLQKQLKDLCKNP----VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (117)
Q Consensus 8 ~RL~~E~~~l~~~~----~~~i~~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~ 77 (117)
+...+|+..+.... -.|+.+... +.=...+.+..|+-.|- --...+++.| .+|-..||+|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLiqa---~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLIQA---SFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEEEc---cCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 34455666654432 245655332 22233444444555552 1235667778 799999999999986
No 54
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=37.98 E-value=26 Score=20.29 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhh
Q 033528 6 ASLLLQKQLKDLCK 19 (117)
Q Consensus 6 ~~~RL~~E~~~l~~ 19 (117)
..+||++||+++.-
T Consensus 35 Dr~rL~kEL~d~D~ 48 (59)
T PF12065_consen 35 DRQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHHccc
Confidence 35799999999853
No 55
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=36.59 E-value=11 Score=19.05 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=10.1
Q ss_pred CcccccCCCCc-EEeecC
Q 033528 78 MWHPNVYPDGK-VCISIL 94 (117)
Q Consensus 78 i~HPnv~~~G~-iCl~~l 94 (117)
-|||.++.+|+ .|-...
T Consensus 2 ~yHPg~~~~g~W~CC~q~ 19 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQT 19 (32)
T ss_dssp EE-SS-EETTCESSSS-S
T ss_pred CcCCCcccCCcCcCCCCc
Confidence 38999998887 665544
No 56
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=36.00 E-value=1e+02 Score=18.79 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCCCCCCCcEEEEEEecCCCCCCCCCEEEEecC
Q 033528 36 FEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (117)
Q Consensus 36 ~~w~~~i~gp~~t~y~g~~f~~~i~~p~~YP~~pP~v~f~t~ 77 (117)
.+|.+.+.|+.+.--..-.=++...+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 57889888877754444556677777777775 55555555
No 57
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=33.46 E-value=70 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCCCC-----CCCEEEEec
Q 033528 52 GGFFNAIMTFPDNYPV-----SPPTVRFTS 76 (117)
Q Consensus 52 g~~f~~~i~~p~~YP~-----~pP~v~f~t 76 (117)
.|.|.|+-..|-.||. .||-|.|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3789999999999998 888887764
No 58
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=1.3e+02 Score=23.38 Aligned_cols=40 Identities=30% Similarity=0.571 Sum_probs=26.0
Q ss_pred CCC-CcEEEEEEecC-----CCCCCCCCEEEEecCCcccccCCCCc
Q 033528 49 LYE-GGFFNAIMTFP-----DNYPVSPPTVRFTSEMWHPNVYPDGK 88 (117)
Q Consensus 49 ~y~-g~~f~~~i~~p-----~~YP~~pP~v~f~t~i~HPnv~~~G~ 88 (117)
-|+ |...-+...|- +.-+...|+|.|.-.+|||||-+.-+
T Consensus 283 ~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~~r 328 (334)
T KOG3696|consen 283 CWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPAER 328 (334)
T ss_pred cccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccccc
Confidence 453 44444455543 33344579999999999999976433
No 59
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.70 E-value=84 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCCCC-----CCCEEEEec
Q 033528 53 GFFNAIMTFPDNYPV-----SPPTVRFTS 76 (117)
Q Consensus 53 ~~f~~~i~~p~~YP~-----~pP~v~f~t 76 (117)
|.|.|.-.+|--||. .||-|.|.-
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 889999999999995 888887664
No 60
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.33 E-value=58 Score=18.46 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhC
Q 033528 4 SQASLLLQKQLKDLCKN 20 (117)
Q Consensus 4 ~~~~~RL~~E~~~l~~~ 20 (117)
+...+|+++|+++++++
T Consensus 47 r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35567888888887764
No 61
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=24.15 E-value=82 Score=26.43 Aligned_cols=29 Identities=21% Similarity=0.568 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEEecCCCCCC---CCCEEEEecC
Q 033528 48 TLYEGGFFNAIMTFPDNYPV---SPPTVRFTSE 77 (117)
Q Consensus 48 t~y~g~~f~~~i~~p~~YP~---~pP~v~f~t~ 77 (117)
+||.=|.|.+ +.+|+.||+ +-|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4666688885 578899997 5799999996
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.91 E-value=79 Score=25.45 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=15.2
Q ss_pred EEEEecCCCCCCC-CCEEEEec
Q 033528 56 NAIMTFPDNYPVS-PPTVRFTS 76 (117)
Q Consensus 56 ~~~i~~p~~YP~~-pP~v~f~t 76 (117)
.++..+|++||.. ||.+...+
T Consensus 77 vlkf~LP~~YPs~spP~f~l~s 98 (445)
T KOG1814|consen 77 VLKFHLPNDYPSVSPPKFELKS 98 (445)
T ss_pred eeeeecCCccccCCCCceeeeh
Confidence 4667889999965 77765544
No 63
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=22.97 E-value=1.3e+02 Score=17.05 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=11.9
Q ss_pred EEEEEEecCCCCCCCCCEEEEec
Q 033528 54 FFNAIMTFPDNYPVSPPTVRFTS 76 (117)
Q Consensus 54 ~f~~~i~~p~~YP~~pP~v~f~t 76 (117)
.+...|.|+..|.. ||+|.+.-
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~i 23 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVSI 23 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEEE
Confidence 35678999888876 88886543
No 64
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=22.61 E-value=29 Score=30.17 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=0.0
Q ss_pred cEEEEEEecCCCCCCCCCEEEEecC
Q 033528 53 GFFNAIMTFPDNYPVSPPTVRFTSE 77 (117)
Q Consensus 53 ~~f~~~i~~p~~YP~~pP~v~f~t~ 77 (117)
.+=-++|.+|.+||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 3344788999999999999877654
No 65
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=1.7e+02 Score=16.77 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCe
Q 033528 1 MAKSQASLLLQKQLKDLCKNPVDGF 25 (117)
Q Consensus 1 Mas~~~~~RL~~E~~~l~~~~~~~i 25 (117)
|+|.-++.-+.+|+++..++.+.+.
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~ 52 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIV 52 (60)
T ss_pred ccchhHHHHHHHHHHHHhccccccc
Confidence 5677788888899999888765544
No 66
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.65 E-value=1.6e+02 Score=21.41 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCCCC-------CCCEEEEec
Q 033528 52 GGFFNAIMTFPDNYPV-------SPPTVRFTS 76 (117)
Q Consensus 52 g~~f~~~i~~p~~YP~-------~pP~v~f~t 76 (117)
.|.|.|.-..|--||. .||-|.|.-
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~V 153 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFSL 153 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEEE
Confidence 4889999999999975 799998853
No 67
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=20.43 E-value=1.6e+02 Score=22.41 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCCC------------------CCCCEEEEec
Q 033528 52 GGFFNAIMTFPDNYP------------------VSPPTVRFTS 76 (117)
Q Consensus 52 g~~f~~~i~~p~~YP------------------~~pP~v~f~t 76 (117)
.|.|.|.-.+|--|| ..||-|.|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 488999999999997 5789998775
No 68
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.25 E-value=1.8e+02 Score=21.85 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEEecCCCCCCCC--CEEEEecC
Q 033528 48 TLYEGGFFNAIMTFPDNYPVSP--PTVRFTSE 77 (117)
Q Consensus 48 t~y~g~~f~~~i~~p~~YP~~p--P~v~f~t~ 77 (117)
+.+.|..|++.|..|.+||-.- |.|.|+..
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 5677999999999999999888 99988874
Done!