Citrus Sinensis ID: 033529

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTST
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccEEEEEcEEEccccccccEEEEEEEEEEccEEEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHcccccccccccccccccEEEEEEEEEcccccccEEEEEEEEHEccEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
mnqyddenhdqatvvgfevpkspdssynnvypgnedeardppavpphlqhtllsypasrdasgilpapqnvilnhlyienrdvprsVVALGFTHRFRSKYVTVVLykpvqrrgstst
Flexible Loop (DISEMBL)
mnqyddenhdqatvvgfevpkspdssYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGfthrfrskyvtvvlykpvqrrgstst
Low Complexity Region (SEG)
MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTST
Disordered region (IsUnstruct)
**************************************************************GILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKP*********
Disordered Region (DISOPRED)
**************************************R*PPAVPPHLQH*******************NVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYK**********
Disordered Region (DISEMBL)
*********DQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV********
Disordered Region (DISPRO)
***************G**V*****SSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q9ZUU8	114	SNF1-related protein kina	yes	no	0.965	0.991	0.689	6e-40
Q9SCY5	289	SNF1-related protein kina	no	no	0.880	0.356	0.567	2e-25
Q84VQ1	283	SNF1-related protein kina	no	no	0.820	0.339	0.525	6e-23
O43741	272	5'-AMP-activated protein	yes	no	0.632	0.272	0.402	8e-10
Q9QZH4	271	5'-AMP-activated protein	yes	no	0.623	0.269	0.410	8e-10
Q6PAM0	271	5'-AMP-activated protein	yes	no	0.632	0.273	0.402	1e-09
Q5R801	270	5'-AMP-activated protein	no	no	0.623	0.270	0.407	2e-09
Q9Y478	270	5'-AMP-activated protein	no	no	0.623	0.270	0.407	2e-09
P80386	270	5'-AMP-activated protein	no	no	0.623	0.270	0.394	4e-09
Q9R078	270	5'-AMP-activated protein	no	no	0.623	0.270	0.394	4e-09

>sp|Q9ZUU8|KINB3_ARATH SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1

 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 93/116 (80%), Gaps = 3/116 (2%)

Query: 1   MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60
           MN  + ++H+  TVVGFEVP SP SSYNNVY   EDE RDPPAVPPHLQH+LL    S +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTS 116
              +  APQNV+LNHLYIENRD PRSVVALGF+HRFR+K+VTVV+YKPVQRRGS +
Sbjct: 61  ---LAYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSAN 113

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 76/104 (73%), Gaps = 1/104 (0%)

Query: 9   HDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR-DASGILPA 67
            D  ++ GFE P+SP++SY+N+  G ED +++PP VPPHLQ TLL+ PA+  D    LP 
Sbjct: 186 EDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPR 245

Query: 68  PQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQR 111
           PQ+VILNHLY++      SVVALG THRF +KYVTVVLYK +QR
Sbjct: 246 PQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 13  TVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVI 72
           ++V FE P SPD SY    P  ED A++P AVPP L  TLL    + + + I   PQ+V+
Sbjct: 188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTEETAIATKPQHVV 244

Query: 73  LNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQR 111
           LNH++IE    P+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 245 LNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 34  NEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGF 92
           +E+  + PP +PPHL   +L+   +      +LP P +V+LNHLY  +  +  SV+ L  
Sbjct: 198 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDSVMVLSA 255

Query: 93  THRFRSKYVTVVLYKPV 109
           THR++ KYVT +LYKP+
Sbjct: 256 THRYKKKYVTTLLYKPI 272

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 5/78 (6%)

Query: 34  NEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLY-IENRDVPRSVVALG 91
           +E+  + PP +PPHL   +L+   +      +LP P +V+LNHLY +  +D   SV+ L 
Sbjct: 197 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSTKD---SVMVLS 253

Query: 92  FTHRFRSKYVTVVLYKPV 109
            THR++ KYVT +LYKP+
Sbjct: 254 ATHRYKKKYVTTLLYKPI 271

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 34  NEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGF 92
           +E+  + PP +PPHL   +L+   +      +LP P +V+LNHLY  +  +  SV+ L  
Sbjct: 197 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDSVMVLSA 254

Query: 93  THRFRSKYVTVVLYKPV 109
           THR++ KYVT +LYKP+
Sbjct: 255 THRYKKKYVTTLLYKPI 271

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 35  EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 93
           E+  R PP +PPHL   +L+          +LP P +V+LNHLY  +  +   V+ L  T
Sbjct: 197 EERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALS--IKDGVMVLSAT 254

Query: 94  HRFRSKYVTVVLYKPV 109
           HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 35  EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 93
           E+  R PP +PPHL   +L+          +LP P +V+LNHLY  +  +   V+ L  T
Sbjct: 197 EERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALS--IKDGVMVLSAT 254

Query: 94  HRFRSKYVTVVLYKPV 109
           HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 35  EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 93
           E+  + PP +PPHL   +L+          +LP P +V+LNHLY     +   V+ L  T
Sbjct: 197 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYA--LSIKDGVMVLSAT 254

Query: 94  HRFRSKYVTVVLYKPV 109
           HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 35  EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 93
           E+  + PP +PPHL   +L+          +LP P +V+LNHLY     +   V+ L  T
Sbjct: 197 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYA--LSIKDGVMVLSAT 254

Query: 94  HRFRSKYVTVVLYKPV 109
           HR++ KYVT +LYKP+
Sbjct: 255 HRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
255565391	117	snf1-kinase beta subunit, plants, putati	0.982	0.982	0.853	2e-50
255644653	117	unknown [Glycine max]	0.991	0.991	0.818	2e-49
356539424	117	PREDICTED: SNF1-related protein kinase r	0.991	0.991	0.818	2e-49
224104685	117	predicted protein [Populus trichocarpa]	0.982	0.982	0.818	8e-49
224132012	117	predicted protein [Populus trichocarpa]	0.982	0.982	0.827	2e-48
449456034	117	PREDICTED: SNF1-related protein kinase r	0.982	0.982	0.8	1e-46
388507554	118	unknown [Lotus japonicus] gi|388520911|g	0.991	0.983	0.769	5e-44
297822471	126	hypothetical protein ARALYDRAFT_481705 [	0.974	0.904	0.692	2e-39
18401611	114	5'-AMP-activated protein kinase beta-2 s	0.965	0.991	0.689	2e-38
218202026	211	hypothetical protein OsI_31076 [Oryza sa	0.888	0.492	0.752	7e-38

>gi|255565391|ref|XP_002523686.1| snf1-kinase beta subunit, plants, putative [Ricinus communis] gi|223536990|gb|EEF38626.1| snf1-kinase beta subunit, plants, putative [Ricinus communis]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 105/116 (90%), Gaps = 1/116 (0%)

Query: 2   NQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDA 61
           NQY  E+H+  TVVGFEVPKSPDSSYNN YPGNED+ARDPPAVPPHLQHTLLSYPAS D 
Sbjct: 3   NQYG-EDHEDTTVVGFEVPKSPDSSYNNAYPGNEDDARDPPAVPPHLQHTLLSYPASADT 61

Query: 62  SGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTST 117
           S  +P PQNVILNHLYIENR+ PRSVVALGFTHRFRSKYVTVVLYKPVQRRGS+ST
Sbjct: 62  SETIPEPQNVILNHLYIENREAPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSSST 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644653|gb|ACU22829.1| unknown [Glycine max]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%)

Query: 1   MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60
           M+    ENHD+ATVVGFEVPKSPDSSYNNVYPGNEDEARDPP VP HLQHTLL+YPA+RD
Sbjct: 1   MSNSHSENHDEATVVGFEVPKSPDSSYNNVYPGNEDEARDPPMVPSHLQHTLLNYPANRD 60

Query: 61  ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTS 116
            +G +P P+NVILNHLYIENR+ PR VV LGFTHRFRSKYVTVVLYKPVQRRG+TS
Sbjct: 61  TAGTVPLPKNVILNHLYIENRESPRFVVGLGFTHRFRSKYVTVVLYKPVQRRGNTS 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539424|ref|XP_003538198.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Glycine max]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 103/116 (88%)

Query: 1   MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60
           M+    ENHD+ TV GFEVPKSPDSSYNNVYPGNEDEARDPP VP HLQHTLL+YPA+RD
Sbjct: 1   MSNSHSENHDEVTVAGFEVPKSPDSSYNNVYPGNEDEARDPPMVPSHLQHTLLNYPANRD 60

Query: 61  ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTS 116
            +G +P PQNVILNHLYIENR+ PRSVVALGFTHRF SKYVTVVLYKPVQRRG+TS
Sbjct: 61  TAGTVPLPQNVILNHLYIENRESPRSVVALGFTHRFHSKYVTVVLYKPVQRRGNTS 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104685|ref|XP_002313527.1| predicted protein [Populus trichocarpa] gi|222849935|gb|EEE87482.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 104/116 (89%), Gaps = 1/116 (0%)

Query: 2   NQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDA 61
           NQ+ ++N D ATV GFEVP+SPDSSYNN YPGNEDE RDPP+VPPHLQH+LLSYPAS D+
Sbjct: 3   NQFSEDNED-ATVAGFEVPRSPDSSYNNAYPGNEDEVRDPPSVPPHLQHSLLSYPASADS 61

Query: 62  SGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTST 117
           S  LP PQNVILNHLYIENR+ PRSVVALGFTHRF SK+VTVVLYKPVQRRGSTST
Sbjct: 62  SETLPLPQNVILNHLYIENRETPRSVVALGFTHRFHSKFVTVVLYKPVQRRGSTST 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132012|ref|XP_002328163.1| predicted protein [Populus trichocarpa] gi|222837678|gb|EEE76043.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 103/116 (88%), Gaps = 1/116 (0%)

Query: 2   NQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDA 61
           NQY  E+H +ATVVGFEVP+SPDSSYNNVYPGNEDE RDPP+VP HLQH+LLSYP S D 
Sbjct: 3   NQYS-EDHGEATVVGFEVPRSPDSSYNNVYPGNEDEVRDPPSVPQHLQHSLLSYPVSADT 61

Query: 62  SGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTST 117
           S  LP PQNVILNHLYIENR+ PRSVVALGFTHRF SK+VTVVLYKPVQRRGSTST
Sbjct: 62  SETLPLPQNVILNHLYIENREAPRSVVALGFTHRFHSKFVTVVLYKPVQRRGSTST 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456034|ref|XP_004145755.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like isoform 1 [Cucumis sativus] gi|449456036|ref|XP_004145756.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like isoform 2 [Cucumis sativus] gi|449532117|ref|XP_004173030.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Cucumis sativus]

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 99/115 (86%)

Query: 1   MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60
           MN    E+ DQ TVVGFEVPKSPDS+YNN+Y G+EDEARDPP VPPHLQHTLLS PASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGST 115
           A   LP PQNVILNHL+IENR+ PRSVVALGFTHRF SKYVTVVLYKPV RRGS+
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507554|gb|AFK41843.1| unknown [Lotus japonicus] gi|388520911|gb|AFK48517.1| unknown [Lotus japonicus]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 99/117 (84%), Gaps = 1/117 (0%)

Query: 1   MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR- 59
           MN    ENHD+ TVVGFEVPKSPDSSY+NVY GN D+ARDPP  PPHLQH LLSYP+SR 
Sbjct: 1   MNNSQSENHDEVTVVGFEVPKSPDSSYSNVYTGNGDDARDPPIAPPHLQHPLLSYPSSRG 60

Query: 60  DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTS 116
           D SG LP P NVILNHL+IE+ + PRSVVA+GFTHRFRSK+VTVVLYKPVQRRGS S
Sbjct: 61  DTSGTLPLPPNVILNHLFIEDGESPRSVVAVGFTHRFRSKFVTVVLYKPVQRRGSPS 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822471|ref|XP_002879118.1| hypothetical protein ARALYDRAFT_481705 [Arabidopsis lyrata subsp. lyrata] gi|297324957|gb|EFH55377.1| hypothetical protein ARALYDRAFT_481705 [Arabidopsis lyrata subsp. lyrata]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 94/117 (80%), Gaps = 3/117 (2%)

Query: 1   MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60
           MN  + ++H+  TVVGFEVP SP SSYNNVY   EDE RDPPAVPPHLQH+LL  P S +
Sbjct: 13  MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSATEDETRDPPAVPPHLQHSLLGNPGSME 72

Query: 61  ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTST 117
              +  APQNV+LNHLYIENRD PRSVVALGF+HRFRSK+VTVV+YKPVQRRG+ + 
Sbjct: 73  ---LAYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRSKFVTVVIYKPVQRRGNANV 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401611|ref|NP_565664.1| 5'-AMP-activated protein kinase beta-2 subunit protein [Arabidopsis thaliana] gi|75216854|sp|Q9ZUU8.1|KINB3_ARATH RecName: Full=SNF1-related protein kinase regulatory subunit beta-3; Short=AKIN subunit beta-3; Short=AKINB3; Short=AKINbeta3 gi|22652764|gb|AAN03809.1|AF491295_1 AKINbeta3 [Arabidopsis thaliana] gi|4063752|gb|AAC98460.1| expressed protein [Arabidopsis thaliana] gi|20197950|gb|AAM15325.1| expressed protein [Arabidopsis thaliana] gi|21553807|gb|AAM62900.1| unknown [Arabidopsis thaliana] gi|32815887|gb|AAP88336.1| At2g28060 [Arabidopsis thaliana] gi|110736286|dbj|BAF00113.1| hypothetical protein [Arabidopsis thaliana] gi|330252980|gb|AEC08074.1| 5'-AMP-activated protein kinase beta-2 subunit protein [Arabidopsis thaliana]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 93/116 (80%), Gaps = 3/116 (2%)

Query: 1   MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60
           MN  + ++H+  TVVGFEVP SP SSYNNVY   EDE RDPPAVPPHLQH+LL    S +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTS 116
              +  APQNV+LNHLYIENRD PRSVVALGF+HRFR+K+VTVV+YKPVQRRGS +
Sbjct: 61  ---LAYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSAN 113

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218202026|gb|EEC84453.1| hypothetical protein OsI_31076 [Oryza sativa Indica Group]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 88/105 (83%), Gaps = 1/105 (0%)

Query: 8   NHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPA 67
           +H+   VVGFEVP SPDSSYNN  PGNEDEAR+PP VPPHLQHTLLS+P S+D S  LP 
Sbjct: 108 DHEGINVVGFEVPTSPDSSYNNPVPGNEDEAREPPLVPPHLQHTLLSFPPSQDDSSSLPP 167

Query: 68  PQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRR 112
           PQNV+LNHLYIE  +  RSVVALG THRFR+K+VTVVLYKPVQRR
Sbjct: 168 PQNVVLNHLYIEKEN-SRSVVALGITHRFRAKFVTVVLYKPVQRR 211

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2046208	114	AT2G28060 [Arabidopsis thalian	0.965	0.991	0.689	1.8e-39
TAIR|locus:2178963	320	AKINBETA1 "AT5G21170" [Arabido	0.905	0.331	0.486	7.8e-23
DICTYBASE|DDB_G0281089	347	prkab "AMP-activated protein k	0.888	0.299	0.378	5.1e-15
UNIPROTKB|Q9NAH7	274	aakb-2 "Protein AAKB-2" [Caeno	0.598	0.255	0.44	2e-13
ZFIN|ZDB-GENE-030131-7172	260	prkab1b "protein kinase, AMP-a	0.760	0.342	0.406	7.1e-13
ZFIN|ZDB-GENE-040718-377	268	prkab1a "protein kinase, AMP-a	0.769	0.335	0.368	7.9e-13
UNIPROTKB|B4DH06	190	PRKAB2 "cDNA FLJ50408, highly	0.769	0.473	0.368	1.9e-12
RGD|620905	271	Prkab2 "protein kinase, AMP-ac	0.760	0.328	0.375	2e-12
UNIPROTKB|O43741	272	PRKAB2 "5'-AMP-activated prote	0.769	0.330	0.368	2.6e-12
MGI|MGI:1336185	271	Prkab2 "protein kinase, AMP-ac	0.769	0.332	0.368	3.4e-12

TAIR|locus:2046208 AT2G28060 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 80/116 (68%), Positives = 93/116 (80%)

Query:     1 MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60
             MN  + ++H+  TVVGFEVP SP SSYNNVY   EDE RDPPAVPPHLQH+LL    S +
Sbjct:     1 MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query:    61 ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQRRGSTS 116
                +  APQNV+LNHLYIENRD PRSVVALGF+HRFR+K+VTVV+YKPVQRRGS +
Sbjct:    61 ---LAYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSAN 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2178963 AKINBETA1 "AT5G21170" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 54/111 (48%), Positives = 73/111 (65%)

Query:     1 MNQYDDENHDQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRD 60
             ++ +  EN +  ++V FE P SPD SY    P  ED A++P AVPP L  TLL    + +
Sbjct:   215 VHNFVPENPE--SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLG---TTE 269

Query:    61 ASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQR 111
              + I   PQ+V+LNH++IE    P+S+VALG THRF SKY+TVVLYKP+ R
Sbjct:   270 ETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 320

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

DICTYBASE|DDB_G0281089 prkab "AMP-activated protein kinase beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 194 (73.4 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 42/111 (37%), Positives = 65/111 (58%)

Query:     1 MNQYDDENHDQATVVG-FEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR 59
             +N  + +N D +  +   ++  +P  SY+   P  E +   PP++PPHL+  LL+   S 
Sbjct:   229 LNFIEVKNKDPSNDLNTLKLSSTPPGSYSRTIPEEEVQKIPPPSLPPHLRRALLNTQPST 288

Query:    60 DASGILPAPQNVILNHLYIENRDVPRS--VVALGFTHRFRSKYVTVVLYKP 108
             +   +LP P +V+LNHLY     +PR   V  LG THR+++K+VT VLYKP
Sbjct:   289 EDPTLLPLPHHVMLNHLY----SLPRKNKVSILGVTHRYKTKFVTTVLYKP 335

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9NAH7 aakb-2 "Protein AAKB-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 151 (58.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
 Identities = 33/75 (44%), Positives = 47/75 (62%)

Query:    37 EARDPPAVPPHLQHTLLSY--PASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTH 94
             +A  PP +PP L   LL+   P S D + +LP P +V+LNH+Y  +  +  SV+ L  T 
Sbjct:   203 KAAGPPVIPPQLMQVLLNKETPESCDPN-VLPEPNHVMLNHMYALS--IKDSVMVLSSTQ 259

Query:    95 RFRSKYVTVVLYKPV 109
             R+R K+VT +LYKPV
Sbjct:   260 RYRKKFVTTLLYKPV 274

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-030131-7172 prkab1b "protein kinase, AMP-activated, beta 1 non-catalytic subunit, b" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 39/96 (40%), Positives = 58/96 (60%)

Query:    18 EVPKSPDSSYN-NVYPG-NEDEARDPPAVPPHLQHTLLSYPA--SRDASGILPAPQNVIL 73
             ++  SP   Y+ + Y   +ED+ R PP +PPHL   LL+     S D + +LP P +V+L
Sbjct:   168 DLSSSPPGPYHQDPYSTKSEDKLRSPPILPPHLLQVLLNKDTGISCDPT-LLPEPNHVML 226

Query:    74 NHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
             NHLY  +  +   V+ L  THR++ KYVT +LYKP+
Sbjct:   227 NHLYALS--IKDGVMVLSATHRYKKKYVTTLLYKPI 260

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

ZFIN|ZDB-GENE-040718-377 prkab1a "protein kinase, AMP-activated, beta 1 non-catalytic subunit, a" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 7.9e-13, P = 7.9e-13
 Identities = 35/95 (36%), Positives = 55/95 (57%)

Query:    18 EVPKSPDSSYN-NVY-PGNEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILN 74
             ++  SP   Y+ + Y P  E++ + PP +PPHL   +L+          +LP P +V+LN
Sbjct:   176 DLSSSPPGPYHQDAYTPKQEEKFKSPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 235

Query:    75 HLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
             HLY  +  +   V+ L  THR++ KYVT +LYKP+
Sbjct:   236 HLYALS--IKDGVMVLSATHRYKKKYVTTLLYKPI 268

GO:0005575 "cellular_component" evidence=ND

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|B4DH06 PRKAB2 "cDNA FLJ50408, highly similar to 5'-AMP-activated protein kinase subunit beta-2" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/95 (36%), Positives = 55/95 (57%)

Query:    18 EVPKSPDSSYNN-VYP-GNEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILN 74
             ++  SP   Y   +Y   +E+  + PP +PPHL   +L+   +      +LP P +V+LN
Sbjct:    98 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 157

Query:    75 HLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
             HLY  +  +  SV+ L  THR++ KYVT +LYKP+
Sbjct:   158 HLYALS--IKDSVMVLSATHRYKKKYVTTLLYKPI 190

GO:0016301 "kinase activity" evidence=IEA

RGD|620905 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 167 (63.8 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 36/96 (37%), Positives = 56/96 (58%)

Query:    18 EVPKSPDSSYNN-VYP-GNEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILN 74
             ++  SP   Y   +Y   +E+  + PP +PPHL   +L+   +      +LP P +V+LN
Sbjct:   179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query:    75 HLY-IENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
             HLY +  +D   SV+ L  THR++ KYVT +LYKP+
Sbjct:   239 HLYALSTKD---SVMVLSATHRYKKKYVTTLLYKPI 271

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0042802 "identical protein binding" evidence=ISO

UNIPROTKB|O43741 PRKAB2 "5'-AMP-activated protein kinase subunit beta-2" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 35/95 (36%), Positives = 55/95 (57%)

Query:    18 EVPKSPDSSYNN-VYP-GNEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILN 74
             ++  SP   Y   +Y   +E+  + PP +PPHL   +L+   +      +LP P +V+LN
Sbjct:   180 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 239

Query:    75 HLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
             HLY  +  +  SV+ L  THR++ KYVT +LYKP+
Sbjct:   240 HLYALS--IKDSVMVLSATHRYKKKYVTTLLYKPI 272

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006853 "carnitine shuttle" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

MGI|MGI:1336185 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 165 (63.1 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 35/95 (36%), Positives = 55/95 (57%)

Query:    18 EVPKSPDSSYNN-VYP-GNEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILN 74
             ++  SP   Y   +Y   +E+  + PP +PPHL   +L+   +      +LP P +V+LN
Sbjct:   179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query:    75 HLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
             HLY  +  +  SV+ L  THR++ KYVT +LYKP+
Sbjct:   239 HLYALS--IKDSVMVLSATHRYKKKYVTTLLYKPI 271

GO:0004679 "AMP-activated protein kinase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005952 "cAMP-dependent protein kinase complex" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUU8	KINB3_ARATH	No assigned EC number	0.6896	0.9658	0.9912	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0001135601 hypothetical protein (117 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
pfam04739	94	pfam04739, AMPKBI, 5'-AMP-activated protein kinase	2e-32
smart01010	100	smart01010, AMPKBI, 5'-AMP-activated protein kinas	1e-27

>gnl|CDD|218238 pfam04739, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain

 Score =  109 bits (274), Expect = 2e-32
 Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 10/96 (10%)

Query: 22  SPDSSYNNVYPGNE-------DEARDPPAVPPHLQHTLL-SYPASRDASGILPAPQNVIL 73
           SP SSY+N  P N        + A++PP++PPHL  T+L    AS D   +LP P +V+L
Sbjct: 1   SPPSSYSNEIPANFQDLDFEEEFAKEPPSLPPHLLKTILNKPTASTDDPSLLPIPNHVVL 60

Query: 74  NHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
           NHLY  +      V+ALG T R++SKYVT VLYKP+
Sbjct: 61  NHLYTSSI--KNGVLALGATTRYKSKYVTTVLYKPL 94

This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family. Length = 94

>gnl|CDD|214973 smart01010, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain

 Score = 97.0 bits (242), Expect = 1e-27
 Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 15/102 (14%)

Query: 21  KSPDSSYNNVYP-----------GNEDEARDPPAVPPHLQHTLL--SYPASRDASGILPA 67
           +SP  SY N  P             E++ ++PPA+PPHL+  +L  S  A+R+   +LP 
Sbjct: 1   QSPPESYTNEIPACFTDDDFIEESPEEKWKEPPALPPHLEKVILNTSSTATREDPSLLPI 60

Query: 68  PQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
           P +V+LNHLY  +      V+A+  T R+R KYVT VLYKP+
Sbjct: 61  PNHVVLNHLYTSSI--KDGVLAVAATTRYRGKYVTQVLYKPL 100

This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
PF04739	100	AMPKBI: 5'-AMP-activated protein kinase beta subun	100.0
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.93

>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=3e-39  Score=229.85  Aligned_cols=87  Identities=54%  Similarity=0.998  Sum_probs=65.6

Q ss_pred             CCCCCCCCCCCCCC------------CccCCCCCCCCcccccccCCCCCC-CCCCCCCCCCCeEeeeeEEeeecccCCCe
Q 033529           21 KSPDSSYNNVYPGN------------EDEARDPPAVPPHLQHTLLSYPAS-RDASGILPAPQNVILNHLYIENRDVPRSV   87 (117)
Q Consensus        21 ~SP~ssY~~~~p~~------------ed~~k~PP~LPphL~~~iLN~~~s-~~~~~~Lp~P~HVvLNHLy~~s~~ik~~v   87 (117)
                      .+|+++|++++|+.            ++++++||.|||||+++|||++.+ .|++++||+|+||+|||||+++  ||+||
T Consensus         1 ~~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~--ik~~v   78 (100)
T PF04739_consen    1 QSPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSS--IKDGV   78 (100)
T ss_dssp             ------EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEE--EBTTE
T ss_pred             CCCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEcc--cCCCe
Confidence            37899999999985            488999999999999999999854 4889999999999999999998  99999


Q ss_pred             EEeeeceeecceeeEEEEeecc
Q 033529           88 VALGFTHRFRSKYVTVVLYKPV  109 (117)
Q Consensus        88 ~alg~ThRy~~KyVTtvlYkP~  109 (117)
                      +|+|+|||||+||||||||||+
T Consensus        79 ~al~~T~Ryk~KyVT~vlYkP~  100 (100)
T PF04739_consen   79 LALGTTHRYKSKYVTTVLYKPI  100 (100)
T ss_dssp             EEEEEEEEETTEEEEEEEEEE-
T ss_pred             EEEEEEEEecceEEEEEEecCC
Confidence            9999999999999999999996

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.1e-26  Score=189.02  Aligned_cols=91  Identities=42%  Similarity=0.745  Sum_probs=83.8

Q ss_pred             cCCCCCCCCCCCCCCCCccCCC--CCCCCcccccccCCCCCCC-CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeecee
Q 033529           19 VPKSPDSSYNNVYPGNEDEARD--PPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHR   95 (117)
Q Consensus        19 ~p~SP~ssY~~~~p~~ed~~k~--PP~LPphL~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThR   95 (117)
                      ...++..+|+|++|..+++.+.  ||.|||||.++|||+.... |++.++++|+||+|||||+.+  ||+++++|++|||
T Consensus       196 ~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~s--ik~~~~~~~~~~r  273 (289)
T KOG1616|consen  196 LEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALS--IKDGVMVLSFTHR  273 (289)
T ss_pred             cccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhc--cCCCeeEecceec
Confidence            3444599999999998888766  9999999999999998765 999999999999999999998  9999999999999


Q ss_pred             ecceeeEEEEeecccC
Q 033529           96 FRSKYVTVVLYKPVQR  111 (117)
Q Consensus        96 y~~KyVTtvlYkP~~r  111 (117)
                      |++||||++||||+.+
T Consensus       274 ~~~k~vt~~lyk~~~~  289 (289)
T KOG1616|consen  274 YKKKYVTTGLYKPLQL  289 (289)
T ss_pred             ccccceeEEeeeeccC
Confidence            9999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
4eai_B	85	Co-Crystal Structure Of An Ampk Core With Amp Lengt		1e-10
2v8q_B	87	Crystal Structure Of The Regulatory Fragment Of Mam		1e-10
4eag_B	85	Co-Crystal Structure Of An Chimeric Ampk Core With		1e-09
4eak_B	72	Co-Crystal Structure Of An Ampk Core With Atp Lengt		5e-09
3t4n_B	113	Structure Of The Regulatory Fragment Of Saccharomyc		4e-07
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		7e-07
2oox_B	97	Crystal Structure Of The Adenylate Sensor From Amp-		4e-04

>pdb|4EAI|B Chain B, Co-Crystal Structure Of An Ampk Core With Amp Length = 85

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 34  NEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGF 92
           +E+  + PP +PPHL   +L+   +      +LP P +V+LNHLY     +  SV+ L  
Sbjct: 11  SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLY--ALSIKDSVMVLSA 68
Query: 93  THRFRSKYVTVVLYKPV 109
           THR++ KYVT +LYKP+
Sbjct: 69  THRYKKKYVTTLLYKPI 85

>pdb|2V8Q|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 87

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 34  NEDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGF 92
           +E+  + PP +PPHL   +L+   +      +LP P +V+LNHLY     +  SV+ L  
Sbjct: 13  SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLY--ALSIKDSVMVLSA 70
Query: 93  THRFRSKYVTVVLYKPV 109
           THR++ KYVT +LYKP+
Sbjct: 71  THRYKKKYVTTLLYKPI 87

>pdb|4EAG|B Chain B, Co-Crystal Structure Of An Chimeric Ampk Core With Atp Length = 85

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 35  EDEARDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFT 93
           E+  + PP +PPHL   +L+          +LP P +V+LNHLY     +   V+ L  T
Sbjct: 12  EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY--ALSIKDGVMVLSAT 69
Query: 94  HRFRSKYVTVVLYKPV 109
           HR++ KYVT +LYKP+
Sbjct: 70  HRYKKKYVTTLLYKPI 85

>pdb|4EAK|B Chain B, Co-Crystal Structure Of An Ampk Core With Atp Length = 72

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 39  RDPPAVPPHLQHTLLSYPASRDAS-GILPAPQNVILNHLYIENRDVPRSVVALGFTHRFR 97
           + PP +PPHL   +L+          +LP P +V+LNHLY     +   V+ L  THR++
Sbjct: 3   KAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY--ALSIKDGVMVLSATHRYK 60
Query: 98  SKYVTVVLYKPV 109
            KYVT +LYKP+
Sbjct: 61  KKYVTTLLYKPI 72

>pdb|3T4N|B Chain B, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 113

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 41  PPAVPPHLQHTLLS-YPASRDA-----SGILPAPQNVILNHLYIENRDVPRSVVALGFTH 94
           PP +PP L++ +L+ Y A++D      SG LP P +V+LNHL   +  +  + + +    
Sbjct: 38  PPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSS--IKHNTLCVASIV 95
Query: 95  RFRSKYVTVVLYKPVQ 110
           R++ KYVT +LY P++
Sbjct: 96  RYKQKYVTQILYTPIE 111

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 8/75 (10%)
Query: 41  PPAVPPHLQHTLLS-YPASRDA-----SGILPAPQNVILNHLYIENRDVPRSVVALGFTH 94
           PP +PP L++ +L+ Y A++D      SG LP P +V+LNHL   +  +  + + +    
Sbjct: 180 PPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSS--IKHNTLCVASIV 237
Query: 95  RFRSKYVTVVLYKPV 109
           R++ KYVT +LY P+
Sbjct: 238 RYKQKYVTQILYTPI 252

>pdb|2OOX|B Chain B, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 97

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 54  SYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYK 107
           S  A ++   +LP P +V+LNHL   N  +   V+AL  T R+  KYVT  ++K
Sbjct: 42  SNTAYKEDQSVLPNPNHVLLNHLAAANTQL--GVLALSATTRYHRKYVTTAMFK 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
3t4n_B	113	SNF1 protein kinase subunit beta-2; CBS domain, nu	2e-31
2v8q_B	87	5'-AMP-activated protein kinase subunit beta-2; ph	9e-28
2qrd_B	97	SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina	3e-25
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	1e-17

>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B* Length = 113

 Score =  106 bits (265), Expect = 2e-31
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 12  ATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYP------ASRDASGIL 65
           A      V +    + +      +     PP +PP L++ +L+         + + SG L
Sbjct: 9   AVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGAL 68

Query: 66  PAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQR 111
           P P +V+LNHL   +     + + +    R++ KYVT +LY P++ 
Sbjct: 69  PIPNHVVLNHLVTSSIK--HNTLCVASIVRYKQKYVTQILYTPIES 112

>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B* Length = 87

 Score = 96.5 bits (240), Expect = 9e-28
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 24  DSSYNNVYPGNEDEARDPPAVPPHLQHTLL-SYPASRDASGILPAPQNVILNHLYIENRD 82
                     +E+  + PP +PPHL   +L           +LP P +V+LNHLY  +  
Sbjct: 3   PYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIK 62

Query: 83  VPRSVVALGFTHRFRSKYVTVVLYKPV 109
              SV+ L  THR++ KYVT +LYKP+
Sbjct: 63  --DSVMVLSATHRYKKKYVTTLLYKPI 87

>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B* Length = 97

 Score = 90.1 bits (223), Expect = 3e-25
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 22  SPDSSYNNVYP-------GNEDEARDPPAVPPHLQHTLLS-YPASRDASGILPAPQNVIL 73
           S    Y+   P         E +   PP++PPHL+  +L+   A ++   +LP P +V+L
Sbjct: 2   SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLL 61

Query: 74  NHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPVQ 110
           NHL   N      V+AL  T R+  KYVT  ++K   
Sbjct: 62  NHLAAANTQ--LGVLALSATTRYHRKYVTTAMFKNFD 96

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 17  FEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYP------ASRDASGILPAPQN 70
             V +    + +      +     PP +PP L++ +L+         + + SG LP P +
Sbjct: 156 PSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNH 215

Query: 71  VILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
           V+LNHL   +     + + +    R++ KYVT +LY P+
Sbjct: 216 VVLNHLVTSSI--KHNTLCVASIVRYKQKYVTQILYTPI 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
2v8q_B	87	5'-AMP-activated protein kinase subunit beta-2; ph	100.0
2qrd_B	97	SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina	100.0
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	100.0
3t4n_B	113	SNF1 protein kinase subunit beta-2; CBS domain, nu	100.0

>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*

Probab=100.00  E-value=4.4e-40  Score=229.09  Aligned_cols=83  Identities=39%  Similarity=0.746  Sum_probs=67.3

Q ss_pred             CCCCCCCCC--CCccCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeeceeecceee
Q 033529           25 SSYNNVYPG--NEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYV  101 (117)
Q Consensus        25 ssY~~~~p~--~ed~~k~PP~LPphL~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThRy~~KyV  101 (117)
                      ++|+|+++.  .+|++|+||.|||||+++|||++++. ||+++||+|+||||||||++|  |+++|+|||+|||||+|||
T Consensus         2 ~~y~q~~~~~~~~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~s--ik~~v~alg~T~Ry~~KyV   79 (87)
T 2v8q_B            2 GPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDSVMVLSATHRYKKKYV   79 (87)
T ss_dssp             ---CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECC--CBTTEEEEEEEEEETTEEE
T ss_pred             CcccccCCCCCccccccCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeEEEec--ccCCeEEEeeeeeecceeE
Confidence            479999886  48999999999999999999998664 889999999999999999998  7899999999999999999


Q ss_pred             EEEEeecc
Q 033529          102 TVVLYKPV  109 (117)
Q Consensus       102 TtvlYkP~  109 (117)
                      |+|||||+
T Consensus        80 T~vlYkP~   87 (87)
T 2v8q_B           80 TTLLYKPI   87 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeeC
Confidence            99999996

>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*

Probab=100.00  E-value=5.3e-40  Score=232.51  Aligned_cols=87  Identities=33%  Similarity=0.620  Sum_probs=79.4

Q ss_pred             CCCCCCCCCCCCCC-----c--cCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeec
Q 033529           22 SPDSSYNNVYPGNE-----D--EARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFT   93 (117)
Q Consensus        22 SP~ssY~~~~p~~e-----d--~~k~PP~LPphL~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~T   93 (117)
                      ||+++|+++||...     +  ++++||.|||||+++|||++++. ||+++||+|+||||||||++|  ||++|+|||+|
T Consensus         2 ~~~~~y~~eIP~~~~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~s--ik~~vlalg~T   79 (97)
T 2qrd_B            2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAAN--TQLGVLALSAT   79 (97)
T ss_dssp             --CCCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEEC--CSSSSEEEEEE
T ss_pred             CccccccccCChhhhcccccccccCCCCCCChhhcccccCCCCCCCCCcccCCCCCEEEeeeeeeec--ccCCeEEEeee
Confidence            68899999999854     4  78999999999999999998765 889999999999999999998  78999999999


Q ss_pred             eeecceeeEEEEeeccc
Q 033529           94 HRFRSKYVTVVLYKPVQ  110 (117)
Q Consensus        94 hRy~~KyVTtvlYkP~~  110 (117)
                      ||||+||||+|||||++
T Consensus        80 ~Ry~~KyVT~vlYkP~~   96 (97)
T 2qrd_B           80 TRYHRKYVTTAMFKNFD   96 (97)
T ss_dssp             EEETTEEEEEEEEECCC
T ss_pred             eeeeceeEEEEEEecCC
Confidence            99999999999999986

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=100.00  E-value=2e-39  Score=257.86  Aligned_cols=90  Identities=31%  Similarity=0.631  Sum_probs=50.6

Q ss_pred             ecCCCCCCCCCCCCCCC-------C--------------ccCCCCCCCCcccccccCCCCCCC------CCCCCCCCCCe
Q 033529           18 EVPKSPDSSYNNVYPGN-------E--------------DEARDPPAVPPHLQHTLLSYPASR------DASGILPAPQN   70 (117)
Q Consensus        18 e~p~SP~ssY~~~~p~~-------e--------------d~~k~PP~LPphL~~~iLN~~~s~------~~~~~Lp~P~H   70 (117)
                      |.+.+|+++|+|+||..       |              ..+++||.|||||+++|||+++.+      |++++||+|||
T Consensus       136 ~~~~~p~~~y~~eiP~~~~~~~~~e~~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~~~~~~Lp~PnH  215 (252)
T 2qlv_B          136 DLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNH  215 (252)
T ss_dssp             ----------CCCCCGGGTCHHHHHHHHHHHCC-----------CCCCCCC----------------------------C
T ss_pred             cCCCCCcccccccCCchhcccchhhhhhhcccccccccccccCCCCCCChhhcchhcCCCCccccccccCCcccCCCCCE
Confidence            78999999999999974       1              146999999999999999997653      68999999999


Q ss_pred             EeeeeEEeeecccCCCeEEeeeceeecceeeEEEEeecc
Q 033529           71 VILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV  109 (117)
Q Consensus        71 VvLNHLy~~s~~ik~~v~alg~ThRy~~KyVTtvlYkP~  109 (117)
                      ||||||||+|  ||++|||||||||||+|||||||||||
T Consensus       216 VvLNHL~~~s--Ik~~vlal~~T~RYk~KyVTtvlYkP~  252 (252)
T 2qlv_B          216 VVLNHLVTSS--IKHNTLCVASIVRYKQKYVTQILYTPI  252 (252)
T ss_dssp             CSCCBCEECC--CCSSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             EEeeeEEEec--ccCCEEEEeeeeeecceeEEEEEEeeC
Confidence            9999999998  999999999999999999999999997

>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B*

Probab=100.00  E-value=2.3e-37  Score=224.04  Aligned_cols=74  Identities=32%  Similarity=0.670  Sum_probs=67.7

Q ss_pred             ccCCCCCCCCcccccccCCCCCC------CCCCCCCCCCCeEeeeeEEeeecccCCCeEEeeeceeecceeeEEEEeecc
Q 033529           36 DEARDPPAVPPHLQHTLLSYPAS------RDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV  109 (117)
Q Consensus        36 d~~k~PP~LPphL~~~iLN~~~s------~~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThRy~~KyVTtvlYkP~  109 (117)
                      ..|++||.|||||+++|||++.+      .|++++||+|+||||||||++|  ||++|+|||+|||||+||||+|||||+
T Consensus        33 ~~~~~PP~LPphL~~~iLN~~~~~~~~~~~d~~~~Lp~P~HVvLNHLy~~s--ik~~vlalg~T~RYk~KyVT~VlYKP~  110 (113)
T 3t4n_B           33 TSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSS--IKHNTLCVASIVRYKQKYVTQILYTPI  110 (113)
T ss_dssp             CGGGSCCBCCGGGCHHHHHHHHHHHHHHHHHCCSCCCCCCGGGTTBCEECC--CBTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CcCCCCCCCChhhcccccCCCccccccccCCCcccCCCCCeEeeeeeeeec--ccCceEEEeeeeeeeceeEEEEEEeec
Confidence            45799999999999999998643      2678999999999999999998  889999999999999999999999999


Q ss_pred             cC
Q 033529          110 QR  111 (117)
Q Consensus       110 ~r  111 (117)
                      +|
T Consensus       111 q~  112 (113)
T 3t4n_B          111 ES  112 (113)
T ss_dssp             C-
T ss_pred             cc
Confidence            97

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d2qrdb1	93	d.353.1.1 (B:205-297) AMP-activated protein kinase	5e-29
d2v8qb1	83	d.353.1.1 (B:190-272) 5'-AMP-activated protein kin	6e-29
d2qlvb2	107	d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisi	6e-24

>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]} Length = 93

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: AMP-activated protein kinase beta subunit
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 98.8 bits (246), Expect = 5e-29
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 33  GNEDEARDPPAVPPHLQHTLL-SYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALG 91
             E +   PP++PPHL+  +L S  A ++   +LP P +V+LNHL   N      V+AL 
Sbjct: 17  LQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANT--QLGVLALS 74

Query: 92  FTHRFRSKYVTVVLYKPVQ 110
            T R+  KYVT  ++K   
Sbjct: 75  ATTRYHRKYVTTAMFKNFD 93

>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: 5'-AMP-activated protein kinase subunit beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.9 bits (244), Expect = 6e-29
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 35  EDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFT 93
           E+  + PP +PPHL   +L+   +      +LP P +V+LNHLY  +     SV+ L  T
Sbjct: 10  EERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIK--DSVMVLSAT 67

Query: 94  HRFRSKYVTVVLYKPV 109
           HR++ KYVT +LYKP+
Sbjct: 68  HRYKKKYVTTLLYKPI 83

>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 107

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 86.1 bits (213), Expect = 6e-24
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 17  FEVPKSPDSSYNNVY---PGNEDEARDPPAVPPHLQHTLLSYP------ASRDASGILPA 67
           F  P   +  Y  +       +     PP +PP L++ +L+         + + SG LP 
Sbjct: 8   FTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPI 67

Query: 68  PQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109
           P +V+LNHL   +     + + +    R++ KYVT +LY P+
Sbjct: 68  PNHVVLNHLVTSSIK--HNTLCVASIVRYKQKYVTQILYTPI 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d2qrdb1	93	AMP-activated protein kinase beta subunit {Schizos	100.0
d2v8qb1	83	5'-AMP-activated protein kinase subunit beta-2 {Hu	100.0
d2qlvb2	107	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	100.0

>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: AMP-activated protein kinase beta subunit
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=100.00  E-value=6.3e-41  Score=234.12  Aligned_cols=84  Identities=35%  Similarity=0.655  Sum_probs=78.9

Q ss_pred             CCCCCCCCC-------CCccCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeeceee
Q 033529           25 SSYNNVYPG-------NEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRF   96 (117)
Q Consensus        25 ssY~~~~p~-------~ed~~k~PP~LPphL~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThRy   96 (117)
                      ++|+++||+       .|+++++||.|||||+++|||++++. |++++||+||||||||||++|  ||++|+|||+||||
T Consensus         2 ~~y~~~iP~~~~~~~~~~~~~~~PP~lPphL~~tiLN~~~~~~d~~~~Lp~P~HVvLNHLy~~s--ik~~vlalg~T~Ry   79 (93)
T d2qrdb1           2 EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAAN--TQLGVLALSATTRY   79 (93)
T ss_dssp             CCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEEC--CSSSSEEEEEEEEE
T ss_pred             cchhhhcChhhccccchhhccCCCCCCChHHceeccCCCCCCCCCcccCCCCCEEEeeheeecc--ccCceEEEEeEEEe
Confidence            689999998       57889999999999999999997664 889999999999999999998  89999999999999


Q ss_pred             cceeeEEEEeeccc
Q 033529           97 RSKYVTVVLYKPVQ  110 (117)
Q Consensus        97 ~~KyVTtvlYkP~~  110 (117)
                      |+||||+|||||++
T Consensus        80 ~~KyVT~VlYkPlq   93 (93)
T d2qrdb1          80 HRKYVTTAMFKNFD   93 (93)
T ss_dssp             TTEEEEEEEEECCC
T ss_pred             cceeEEEEEeccCC
Confidence            99999999999986

>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: 5'-AMP-activated protein kinase subunit beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=223.35  Aligned_cols=80  Identities=39%  Similarity=0.738  Sum_probs=65.7

Q ss_pred             CCCCCC--CCccCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeeceeecceeeEEE
Q 033529           28 NNVYPG--NEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVV  104 (117)
Q Consensus        28 ~~~~p~--~ed~~k~PP~LPphL~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThRy~~KyVTtv  104 (117)
                      ||+++.  .||++|+||.|||||+++|||++.+. |++++||+||||||||||++|  |+++|+|||+|||||+||||+|
T Consensus         1 gq~~~~~~~ed~~k~PP~lPp~L~~~iLN~~~~~~~~~~~lp~P~HVvLNHLy~~s--ik~~v~alg~T~Ry~~KyVT~V   78 (83)
T d2v8qb1           1 GQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDSVMVLSATHRYKKKYVTTL   78 (83)
T ss_dssp             CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECC--CBTTEEEEEEEEEETTEEEEEE
T ss_pred             CCcccccChhhccCCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeeeecc--ccCceEEEEeEEEecceeEEEE
Confidence            455555  47999999999999999999998765 788999999999999999998  8999999999999999999999


Q ss_pred             Eeecc
Q 033529          105 LYKPV  109 (117)
Q Consensus       105 lYkP~  109 (117)
                      ||||+
T Consensus        79 lYkPl   83 (83)
T d2v8qb1          79 LYKPI   83 (83)
T ss_dssp             EEEEC
T ss_pred             EEeeC
Confidence            99996

>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=7.6e-36  Score=212.66  Aligned_cols=74  Identities=32%  Similarity=0.675  Sum_probs=44.1

Q ss_pred             CCccCCCCCCCCcccccccCCCCCCC------CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeeceeecceeeEEEEee
Q 033529           34 NEDEARDPPAVPPHLQHTLLSYPASR------DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYK  107 (117)
Q Consensus        34 ~ed~~k~PP~LPphL~~~iLN~~~s~------~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThRy~~KyVTtvlYk  107 (117)
                      ..+.|+.||.|||||+++|||+..+.      |++++||+||||||||||++|  ||++|+|||+|||||+||||+||||
T Consensus        28 ~~~~~~~PP~LPp~L~~tiLN~~~~~~d~~~~~~~~~Lp~PnHVvLNHLyt~s--ik~~vlalg~T~RY~~KyVT~VlYk  105 (107)
T d2qlvb2          28 TDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSS--IKHNTLCVASIVRYKQKYVTQILYT  105 (107)
T ss_dssp             -------CCCCCCC----------------------------CCSCCBCEECC--CCSSEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccccCCCCCCCChHHceeccCCCCcccCccccCCcccCCCCCeEEeeeeeecc--ccCceEEEEeEEeecceeEEEEEee
Confidence            34678999999999999999986432      578999999999999999998  8999999999999999999999999


Q ss_pred             cc
Q 033529          108 PV  109 (117)
Q Consensus       108 P~  109 (117)
                      |+
T Consensus       106 Pl  107 (107)
T d2qlvb2         106 PI  107 (107)
T ss_dssp             EC
T ss_pred             cC
Confidence            96