BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033530
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1
PE=2 SV=1
Length = 119
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1
PE=1 SV=1
Length = 119
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1
PE=3 SV=1
Length = 119
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila
melanogaster GN=SmD1 PE=1 SV=1
Length = 124
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 85/91 (93%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV+L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPDSL LETLL+++TP+ K KK
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKK 91
>sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1
Length = 117
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 80/91 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL NETVSIELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRYYILPDSL L+TLL++++ + K KK
Sbjct: 61 RGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis
elegans GN=snr-3 PE=3 SV=1
Length = 126
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 74/88 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVK 88
RGNNIRY ILPD L L+TLL+++ PR K
Sbjct: 61 RGNNIRYIILPDPLALDTLLIDDEPRKK 88
>sp|Q02260|SMD1_YEAST Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD1 PE=1 SV=1
Length = 146
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 61/110 (55%), Gaps = 27/110 (24%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK------------ 48
MKLV FL KL NE V+IELKNGT V GT+ V MN L VKLTL
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGI 60
Query: 49 ---------GKNP------VNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
G+ P +L ++++RGN IR ILPDSLNL++LLV++
Sbjct: 61 AMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens
GN=LSM10 PE=1 SV=1
Length = 123
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEE 83
N+RY +PD +N+ + + ++
Sbjct: 77 RNVRYVHIPDDVNITSTIEQQ 97
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus
GN=Lsm10 PE=1 SV=1
Length = 122
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEE 83
N+RY +PD +++ + ++
Sbjct: 77 RNVRYVHIPDGVDITATIEQQ 97
>sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1
Length = 97
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++EL+NG+ G + + +MN ++ + +T + +LD + +RG+
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGS 64
Query: 64 NIRYYILPDSL 74
+IR+ I+PD L
Sbjct: 65 HIRFLIVPDML 75
>sp|Q54F84|Y1015_DICDI Putative uncharacterized protein DDB_G0291015 OS=Dictyostelium
discoideum GN=DDB_G0291015 PE=4 SV=1
Length = 137
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLT---LKGKNPVNLDHLSVRGNNIR 66
L ++I+L++ ++GTIT VD +N L KLT K K ++ + ++ NIR
Sbjct: 38 LRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSRNIR 97
Query: 67 YYILPDSLNLETLL 80
+ +PD ++L +LL
Sbjct: 98 FIQIPDKIDLNSLL 111
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + VRGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEV- 75
Query: 76 LETLLVEETPRVKPKKPTAG 95
++ + E R K P G
Sbjct: 76 IDKVQEEAKSRTDRKPPGVG 95
>sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1
Length = 101
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VS+EL G G + + SMN L+ V T ++D + VRG+
Sbjct: 8 VKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKP 89
I++ ++PD L L + + R P
Sbjct: 68 QIKFIVVPDLLKNAPLFKKNSSRPMP 93
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans
GN=snr-1 PE=2 SV=2
Length = 136
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E G + G ++ + +MN L +T + LD++ +RGN
Sbjct: 8 IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 68 KIRFMILPDML 78
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster
GN=SmD3 PE=1 SV=1
Length = 151
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 42/83 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPR 86
IR+ ILPD L + ++T +
Sbjct: 67 KIRFLILPDMLKNAPMFKKQTGK 89
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELK+G +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDEV- 75
Query: 76 LETLLVEETPRVKPKKP 92
++ + E R K P
Sbjct: 76 IDKVQEETKSRADRKPP 92
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3
PE=2 SV=1
Length = 126
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3
PE=1 SV=1
Length = 126
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3
PE=1 SV=1
Length = 126
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2
PE=3 SV=1
Length = 95
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLP-ADEVDTQLLQDAAR 87
>sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2
PE=1 SV=1
Length = 95
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLP-ADEVDTQLLQDAAR 87
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N + +ELKNG +G + D MN HL V T K G + VRG+ I+Y
Sbjct: 12 QNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLR 71
Query: 70 LPDSL 74
+P+++
Sbjct: 72 IPETV 76
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1
SV=1
Length = 95
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L ++ V +ELKN + GT+ VD +N L + T + K P ++ ++
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY L ++ LL + T R
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRR 88
>sp|A5FE87|DNLJ_FLAJ1 DNA ligase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
2064 / UW101) GN=ligA PE=3 SV=1
Length = 668
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 8 MKLNNETVSIELKNGTIVHGT-----ITGVDISMNTH-LKTVKLTLKGKNPVNLDHLSVR 61
+K + ++SI +NG +V G +++ N +K++ L LKG P D +R
Sbjct: 112 LKYDGASISISYQNGKLVQALTRGDGFQGDEVTNNIKTIKSIPLKLKGDYPERFD---IR 168
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
G I + + +N E + + ETP P+ +G
Sbjct: 169 GEIILPFAGFEKMNQELIEIGETPYSNPRNTASG 202
>sp|Q0UWI9|LSM6_PHANO U6 snRNA-associated Sm-like protein LSm6 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=LSM6 PE=3
SV=2
Length = 89
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ V+++L +G + G + VD MN L+ K +G+ N VRGNN+
Sbjct: 22 FLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRVIRNWGDAFVRGNNV 81
Query: 66 RY 67
Y
Sbjct: 82 TY 83
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L N + +ELKNG +G + D MN +L+ V T + G + +RG+
Sbjct: 6 LLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query: 65 IRYYILPDSL 74
I+Y +PD +
Sbjct: 66 IKYLRIPDEI 75
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L N + +ELKNG +G + D MN +L+ V T + G + +RG+
Sbjct: 6 LLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query: 65 IRYYILPDSL 74
I+Y +PD +
Sbjct: 66 IKYLRIPDEI 75
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ V+++L +G I G + VD MN L+ + + G+ + VRGNN+
Sbjct: 17 FLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGNNV 76
Query: 66 RY 67
Y
Sbjct: 77 MY 78
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis
(strain RS) GN=LSM6 PE=3 SV=1
Length = 80
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL + +V+++L +G + G + +D MN L+ + + GK + + VRGNN+
Sbjct: 15 FLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVRGNNV 74
Query: 66 RY 67
Y
Sbjct: 75 LY 76
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ V+++L +G + G + VD MN L+ K + GK + +RGNN+
Sbjct: 14 FLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIRGNNV 73
Query: 66 RY 67
Y
Sbjct: 74 LY 75
>sp|A6H0N9|DNLJ_FLAPJ DNA ligase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC
49511) GN=ligA PE=3 SV=1
Length = 666
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 8 MKLNNETVSIELKNGTIVHGT-----ITGVDISMNTH-LKTVKLTLKGKNPVNLDHLSVR 61
+K + ++SI +NG +V G D++ N +K V + LKG P D +R
Sbjct: 112 LKYDGASISITYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPEKFD---IR 168
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
G I + + +N + + + ETP P+ +G
Sbjct: 169 GEIILPFAGFEKMNQDLIEIGETPYSNPRNTASG 202
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ V+++L +G + G + VD MN L+ + + GK + VRGNN+
Sbjct: 15 FLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVRGNNV 74
Query: 66 RY 67
Y
Sbjct: 75 LY 76
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L N + +ELKNG +G + D MN +L+ V T + G + +RG+
Sbjct: 6 LLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query: 65 IRYYILPDSL 74
I+Y +PD +
Sbjct: 66 IKYLRIPDEI 75
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTL-KGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN L+ V T+ G L +RGNNI+Y + D +
Sbjct: 17 VELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEV 75
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ +V++ L NG G + +D MN L K + G N + +RGNN+
Sbjct: 20 FLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRGNNV 79
Query: 66 RY 67
Y
Sbjct: 80 LY 81
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV-----------KLTLKGKNPVNLDHLSVR 61
+ + IELKNG I+ G +T VD MN L V + + V L+ + +R
Sbjct: 13 QQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIR 72
Query: 62 GNNIRYYILPDSL 74
G I++ L D++
Sbjct: 73 GTFIKFIKLQDNI 85
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV-NLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN +LK V T K + + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDEI 75
>sp|A7Z261|DNLJ_BACA2 DNA ligase OS=Bacillus amyloliquefaciens (strain FZB42) GN=ligA
PE=3 SV=1
Length = 669
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 8 MKLNNETVSIELKNGTIVHGTI-----TGVDISMNTHLKTVK-LTLKGKNPVNLDHLSVR 61
+K++ VS+ ++G V G TG DI+ N LKT++ + LK K ++++ VR
Sbjct: 115 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITEN--LKTIRNIPLKMKRNLSIE---VR 169
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
G ++LN E L EE P P+ AG
Sbjct: 170 GEAYMPKQSFEALNEERLKHEEEPFANPRNAAAG 203
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ V+++L +G + G + VD MN L+ + + GK + +RGNN+
Sbjct: 15 FLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIRGNNV 74
Query: 66 RY 67
Y
Sbjct: 75 LY 76
>sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum
GN=snrpf PE=3 SV=1
Length = 91
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 6 FLMKLNNETVSIELKNGTIVH-GTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
FL L + +++ LK G + + G + VD MN L + + G N L + +R NN
Sbjct: 12 FLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIRCNN 71
Query: 65 IRY 67
+ +
Sbjct: 72 VLF 74
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ V+++L +G + G + VD MN L+ + + G + VRGNN+
Sbjct: 17 FLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGNNV 76
Query: 66 RY 67
Y
Sbjct: 77 MY 78
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ V+++L +G + G + VD MN L+ + + GK + +RGNN+
Sbjct: 15 FLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIRGNNV 74
Query: 66 RY 67
Y
Sbjct: 75 LY 76
>sp|Q8SQK1|LSM2_ENCCU Probable U6 snRNA-associated Sm-like protein LSm2
OS=Encephalitozoon cuniculi (strain GB-M1) GN=LSM2 PE=3
SV=1
Length = 94
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M F VS+ LK G V G + G+D +N L V++ ++ S+
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHPGLSSISVCSI 60
Query: 61 RGNNIRYYILPD 72
RG++I+ YIL D
Sbjct: 61 RGSSIK-YILVD 71
>sp|Q6R2K3|SRF3_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana
GN=SRF3 PE=1 SV=1
Length = 776
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
+ L F + N T SI GT+ D+S+N +L + +L +N V L +L +
Sbjct: 120 VTLQHFFLSANQFTGSIPESLGTLSFLN----DMSLNDNLLSGELPDVFQNLVGLINLDI 175
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGIDIISQIKLH 105
NNI + P ++E LL T RV+ + + +D++ + L
Sbjct: 176 SSNNISGTLPP---SMENLLTLTTLRVQNNQLSGTLDVLQGLPLQ 217
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6
PE=3 SV=2
Length = 85
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL + V ++L N + G + VD MN L+ + + GK VRGNN+
Sbjct: 17 FLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGNNV 76
Query: 66 RYYILPDS 73
Y DS
Sbjct: 77 MYISADDS 84
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL ++ V+++L +G + G + VD MN L+ + + G + VRGNN+
Sbjct: 17 FLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFVRGNNV 76
Query: 66 RY 67
Y
Sbjct: 77 MY 78
>sp|Q38VN3|MECA_LACSS Adapter protein MecA OS=Lactobacillus sakei subsp. sakei (strain
23K) GN=mecA PE=3 SV=1
Length = 229
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 7 LMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIR 66
+ K++ T+ + L+N + ITG+D+ ++ H K + V+ DH+ + +
Sbjct: 3 MEKIDENTIRVLLENDDLEERGITGLDL-LSNHKKIERFFYSILEEVDQDHVFANNDAVT 61
Query: 67 YYILPDSLNLETLL 80
+ +LP+ LE L+
Sbjct: 62 FQVLPNEQGLELLI 75
>sp|O31498|DNLJ_BACSU DNA ligase OS=Bacillus subtilis (strain 168) GN=ligA PE=3 SV=1
Length = 668
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 8 MKLNNETVSIELKNGTIVHGTI-----TGVDISMNTHLKTVK-LTLKGKNPVNLDHLSVR 61
+K++ VS+ ++G V G TG DI+ N LKT++ + LK ++++ VR
Sbjct: 114 LKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITEN--LKTIRNIPLKMNRELSIE---VR 168
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
G ++LN E + EE P P+ AG
Sbjct: 169 GEAYMPKRSFEALNEERIKNEEEPFANPRNAAAG 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,631,504
Number of Sequences: 539616
Number of extensions: 1570121
Number of successful extensions: 4287
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 4224
Number of HSP's gapped (non-prelim): 86
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)