Query 033530
Match_columns 117
No_of_seqs 130 out of 1102
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9a_D Small nuclear ribonucle 100.0 2.5E-29 8.7E-34 179.1 9.5 98 2-99 5-102 (126)
2 1b34_A Protein (small nuclear 100.0 2.3E-28 7.8E-33 172.3 10.7 90 1-90 1-90 (119)
3 1d3b_A Protein (small nuclear 99.9 5.7E-26 1.9E-30 148.3 10.2 72 1-72 4-75 (75)
4 4emh_A Probable U6 snRNA-assoc 99.9 1.3E-25 4.3E-30 155.6 8.6 84 2-85 16-100 (105)
5 1ljo_A Archaeal SM-like protei 99.9 1.8E-23 6.2E-28 136.4 9.4 73 1-73 4-77 (77)
6 1i4k_A Putative snRNP SM-like 99.9 4E-23 1.4E-27 134.5 9.5 73 2-74 4-76 (77)
7 1h64_1 SnRNP SM-like protein; 99.9 7.5E-23 2.6E-27 132.8 9.4 72 2-73 4-75 (75)
8 3s6n_F Small nuclear ribonucle 99.9 2.2E-22 7.4E-27 134.5 8.8 73 3-75 7-79 (86)
9 1n9r_A SMF, small nuclear ribo 99.9 1.3E-22 4.4E-27 137.6 7.7 72 1-72 20-92 (93)
10 1th7_A SnRNP-2, small nuclear 99.9 4.2E-22 1.5E-26 131.1 8.8 71 3-73 10-80 (81)
11 4emk_B U6 snRNA-associated SM- 99.9 4.6E-22 1.6E-26 129.4 7.8 71 2-72 4-74 (75)
12 1i8f_A Putative snRNP SM-like 99.9 1.4E-21 4.8E-26 128.7 9.0 70 2-72 11-80 (81)
13 3s6n_G Small nuclear ribonucle 99.9 1.1E-21 3.9E-26 127.9 7.9 70 4-73 6-75 (76)
14 1mgq_A SM-like protein; LSM, R 99.9 2.3E-21 7.8E-26 128.4 9.0 69 1-69 14-82 (83)
15 4emk_A U6 snRNA-associated SM- 99.8 1.2E-20 4E-25 128.3 10.4 70 2-71 20-90 (94)
16 1m5q_A SMAP3, small nuclear ri 99.8 6.2E-21 2.1E-25 136.4 7.6 81 3-87 1-81 (130)
17 3bw1_A SMX4 protein, U6 snRNA- 99.8 1.1E-19 3.6E-24 123.5 8.6 72 3-74 11-89 (96)
18 1d3b_B Protein (small nuclear 99.8 7.2E-20 2.5E-24 122.5 6.5 69 5-73 7-85 (91)
19 4emg_A Probable U6 snRNA-assoc 99.8 5.4E-19 1.9E-23 119.5 9.6 70 2-71 9-91 (93)
20 3s6n_E Small nuclear ribonucle 99.8 3.7E-19 1.3E-23 120.4 6.5 71 2-72 16-91 (92)
21 2fwk_A U6 snRNA-associated SM- 99.8 3.9E-19 1.3E-23 125.3 6.5 73 1-73 27-114 (121)
22 4emk_C U6 snRNA-associated SM- 99.8 3.5E-18 1.2E-22 119.4 9.2 71 4-74 25-102 (113)
23 1b34_B Protein (small nuclear 99.7 3.6E-18 1.2E-22 119.7 8.6 72 2-73 27-114 (118)
24 3pgw_B SM B; protein-RNA compl 99.7 5E-17 1.7E-21 125.6 10.7 69 5-73 7-85 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.9 3.8E-09 1.3E-13 70.6 7.8 67 5-77 10-77 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.0 0.0058 2E-07 40.6 8.7 65 9-73 10-84 (88)
27 4a53_A EDC3; RNA binding prote 96.6 0.006 2.1E-07 42.9 6.6 54 7-71 7-62 (125)
28 2fb7_A SM-like protein, LSM-14 96.6 0.0049 1.7E-07 41.5 5.8 65 8-72 15-89 (95)
29 1y96_B Gemin7, SIP3, GEM-assoc 96.6 0.013 4.3E-07 38.8 7.7 64 2-70 19-83 (85)
30 2vc8_A Enhancer of mRNA-decapp 96.6 0.0055 1.9E-07 40.4 5.7 60 8-70 5-66 (84)
31 1u1s_A HFQ protein; SM-like ba 96.4 0.0032 1.1E-07 41.4 3.8 53 11-76 18-70 (82)
32 1kq1_A HFQ, HOST factor for Q 96.4 0.016 5.6E-07 37.5 7.0 57 6-74 11-69 (77)
33 3ahu_A Protein HFQ; SM-like mo 96.3 0.015 5.2E-07 37.8 6.7 59 6-76 15-75 (78)
34 2ylb_A Protein HFQ; RNA-bindin 96.3 0.023 8E-07 36.4 7.3 57 6-75 13-71 (74)
35 2qtx_A Uncharacterized protein 95.9 0.019 6.6E-07 36.7 5.4 31 10-40 23-53 (71)
36 2y90_A Protein HFQ; RNA-bindin 95.8 0.0061 2.1E-07 41.7 3.1 52 12-76 21-72 (104)
37 3sb2_A Protein HFQ; SM-like, R 95.3 0.019 6.5E-07 37.4 4.0 53 11-76 19-71 (79)
38 1ycy_A Conserved hypothetical 94.2 0.26 9.1E-06 31.0 7.0 63 3-70 7-69 (71)
39 2rm4_A CG6311-PB, DM EDC3; enh 92.7 0.66 2.2E-05 31.3 7.4 59 8-70 8-69 (103)
40 3hfo_A SSR3341 protein; HFQ, S 89.3 0.61 2.1E-05 29.5 4.4 46 12-68 21-66 (70)
41 3hfn_A ASL2047 protein; HFQ, S 83.7 6.3 0.00021 24.9 7.3 47 12-69 23-69 (72)
42 3rux_A BIRA bifunctional prote 83.6 1.5 5.3E-05 33.4 4.9 34 9-42 221-254 (270)
43 1ib8_A Conserved protein SP14. 82.7 1.4 4.8E-05 31.6 4.0 31 5-35 97-131 (164)
44 2eay_A Biotin [acetyl-COA-carb 74.7 2 6.8E-05 32.0 2.8 47 9-62 185-232 (233)
45 2e12_A SM-like motif, hypothet 68.5 5 0.00017 26.7 3.3 24 7-30 22-46 (101)
46 4hcz_A PHD finger protein 1; p 67.8 8 0.00027 23.5 3.9 25 11-35 6-30 (58)
47 1zq1_A Glutamyl-tRNA(Gln) amid 67.4 4.3 0.00015 33.5 3.5 42 1-42 1-53 (438)
48 2ej9_A Putative biotin ligase; 66.8 9 0.00031 28.4 4.9 32 10-42 190-221 (237)
49 1bia_A BIRA bifunctional prote 58.3 14 0.00048 28.4 4.8 48 9-62 270-318 (321)
50 2eqj_A Metal-response element- 57.7 15 0.00052 22.8 3.9 25 11-35 16-40 (66)
51 2dxu_A Biotin--[acetyl-COA-car 56.8 8.3 0.00028 28.7 3.1 30 11-42 188-217 (235)
52 2qqr_A JMJC domain-containing 56.1 18 0.0006 24.8 4.5 33 10-42 7-41 (118)
53 2xk0_A Polycomb protein PCL; t 55.0 19 0.00067 22.5 4.1 24 10-33 17-40 (69)
54 1sg5_A ORF, hypothetical prote 53.1 6.2 0.00021 25.5 1.7 24 7-30 20-43 (86)
55 2vqe_L 30S ribosomal protein S 53.0 15 0.00052 25.8 3.7 71 9-95 50-126 (135)
56 2e5p_A Protein PHF1, PHD finge 52.2 21 0.00072 22.3 3.9 25 11-35 12-36 (68)
57 2m0o_A PHD finger protein 1; t 51.6 7.1 0.00024 25.1 1.7 26 10-35 28-53 (79)
58 3uby_A DNA-3-methyladenine gly 49.1 18 0.00062 27.2 3.9 31 6-36 19-49 (219)
59 3rkx_A Biotin-[acetyl-COA-carb 47.9 20 0.0007 27.8 4.2 33 9-42 276-308 (323)
60 3bfm_A Biotin protein ligase-l 44.5 30 0.001 25.3 4.5 29 9-42 191-219 (235)
61 3by7_A Uncharacterized protein 43.5 69 0.0024 21.2 7.1 54 16-71 7-75 (100)
62 1nh2_D Transcription initiatio 42.7 50 0.0017 22.6 5.0 29 20-48 56-87 (121)
63 2e5q_A PHD finger protein 19; 41.9 23 0.0008 21.7 2.9 25 11-35 10-34 (63)
64 3ggm_A Uncharacterized protein 41.1 55 0.0019 19.5 4.7 34 36-69 4-37 (81)
65 1nvp_D Transcription initiatio 40.5 70 0.0024 21.4 5.4 29 20-48 52-83 (108)
66 3fb9_A Uncharacterized protein 38.1 45 0.0015 21.8 4.0 31 5-35 18-52 (90)
67 2qs8_A XAA-Pro dipeptidase; am 36.2 49 0.0017 25.1 4.7 39 31-69 2-41 (418)
68 3kl9_A PEPA, glutamyl aminopep 32.4 34 0.0012 26.8 3.3 25 8-32 95-119 (355)
69 4a8c_A Periplasmic PH-dependen 31.3 64 0.0022 25.7 4.8 31 13-43 88-118 (436)
70 1ky9_A Protease DO, DEGP, HTRA 30.7 63 0.0022 26.0 4.7 31 13-43 111-141 (448)
71 2d6f_A Glutamyl-tRNA(Gln) amid 28.8 44 0.0015 27.4 3.4 38 4-42 8-53 (435)
72 3ooq_A Amidohydrolase; structu 28.2 73 0.0025 24.1 4.4 33 36-69 5-37 (396)
73 3p8d_A Medulloblastoma antigen 27.2 1.1E+02 0.0038 18.6 5.1 25 11-35 9-33 (67)
74 3stj_A Protease DEGQ; serine p 26.6 75 0.0026 24.5 4.3 31 13-43 88-118 (345)
75 2pi2_E Replication protein A 1 25.8 1.6E+02 0.0056 20.2 5.5 20 5-32 36-55 (142)
76 3tjo_A Serine protease HTRA1; 25.7 95 0.0032 22.3 4.5 32 12-43 86-117 (231)
77 3sti_A Protease DEGQ; serine p 25.6 72 0.0025 23.5 3.9 31 13-43 88-118 (245)
78 3mkv_A Putative amidohydrolase 25.5 1E+02 0.0034 21.6 4.5 33 37-69 5-38 (426)
79 4gop_A Putative uncharacterize 25.4 1.4E+02 0.0047 19.7 4.9 22 5-34 11-32 (114)
80 3lgi_A Protease DEGS; stress-s 24.0 1E+02 0.0035 22.0 4.4 31 13-43 77-107 (237)
81 3qii_A PHD finger protein 20; 23.9 1.5E+02 0.0051 19.0 5.1 26 10-35 23-48 (85)
82 3tee_A Flagella basal BODY P-r 23.3 49 0.0017 24.3 2.5 22 10-31 169-190 (219)
83 3pv2_A DEGQ; trypsin fold, PDZ 22.3 77 0.0026 25.5 3.7 31 13-43 102-132 (451)
84 3hpa_A Amidohydrolase; signatu 21.7 1.5E+02 0.005 22.1 5.0 34 36-69 29-65 (479)
85 1lcy_A HTRA2 serine protease; 21.2 1.2E+02 0.004 23.0 4.4 31 13-43 71-101 (325)
86 1o9y_A HRCQ2; secretory protei 20.2 1.6E+02 0.0055 18.1 4.2 35 9-43 46-80 (84)
No 1
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.96 E-value=2.5e-29 Score=179.13 Aligned_cols=98 Identities=21% Similarity=0.400 Sum_probs=83.9
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCcchhhhh
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLV 81 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id~~~~l~ 81 (117)
..++||++++|++|+|+||||++|+|+|.+||+|||++|+||+++.++++..+++.+||||++|+||++||+++.+|+|+
T Consensus 5 ~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~~~~l~ 84 (126)
T 2y9a_D 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLK 84 (126)
T ss_dssp CSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSSSSHHH
T ss_pred cHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccchHHhh
Confidence 45899999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred hcCcccCCCCCCCCccee
Q 033530 82 EETPRVKPKKPTAGIDII 99 (117)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (117)
++.+|.+.+++++|+..+
T Consensus 85 ~~~~k~~~~~~~~g~~~~ 102 (126)
T 2y9a_D 85 SMKNKNQGSGAGRGKAAI 102 (126)
T ss_dssp HHHHHHC-----------
T ss_pred hhhhcccccccCcCchhh
Confidence 999888777666666543
No 2
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.95 E-value=2.3e-28 Score=172.28 Aligned_cols=90 Identities=76% Similarity=1.142 Sum_probs=78.6
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCcchhhh
Q 033530 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 80 (117)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id~~~~l 80 (117)
|++++||++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++..+++.+||||+||+||++||+++++++|
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l~~d~~l 80 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLL 80 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTCCHHHHT
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccccccchhH
Confidence 89999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred hhcCcccCCC
Q 033530 81 VEETPRVKPK 90 (117)
Q Consensus 81 ~~~~~~~~~~ 90 (117)
+++.+|.+.+
T Consensus 81 ~~~~pK~k~~ 90 (119)
T 1b34_A 81 VDVEPKVKSK 90 (119)
T ss_dssp C---------
T ss_pred hhhccccccc
Confidence 9998886543
No 3
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.93 E-value=5.7e-26 Score=148.29 Aligned_cols=72 Identities=24% Similarity=0.476 Sum_probs=69.2
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCC
Q 033530 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72 (117)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd 72 (117)
|.+++||++++|++|+|+||||++|+|+|.+||+|||++|+||+++.++++..+++.+||||++|+||++||
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 457899999999999999999999999999999999999999999988888999999999999999999997
No 4
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.3e-25 Score=155.60 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=56.7
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCC-CceeeceEEEecCeEEEEEcCCCCcchhhh
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK-NPVNLDHLSVRGNNIRYYILPDSLNLETLL 80 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~-~~~~~~~v~IRG~~I~~I~lpd~id~~~~l 80 (117)
.+++||++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..++ +...++.+||||++|+||++||++..+|.+
T Consensus 16 ~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~p~~ 95 (105)
T 4emh_A 16 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVAK 95 (105)
T ss_dssp ----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC----------
T ss_pred cHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhhhhh
Confidence 5789999999999999999999999999999999999999999998777 578999999999999999999999999999
Q ss_pred hhcCc
Q 033530 81 VEETP 85 (117)
Q Consensus 81 ~~~~~ 85 (117)
+++.+
T Consensus 96 ~~~~~ 100 (105)
T 4emh_A 96 QQAQQ 100 (105)
T ss_dssp -----
T ss_pred hhhcc
Confidence 87764
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.90 E-value=1.8e-23 Score=136.43 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=68.4
Q ss_pred CchhHHHhhcCCCEEEEEEcCC-cEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCC
Q 033530 1 MKLVRFLMKLNNETVSIELKNG-TIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73 (117)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng-~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~ 73 (117)
|..+.+|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++..+++...++.++|||++|+||+.||+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 6789999999999999999999 999999999999999999999999887778999999999999999999974
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.89 E-value=4e-23 Score=134.53 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=68.3
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCC
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~i 74 (117)
..+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++...++.++|||++|++|+.||..
T Consensus 4 ~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 4 RPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC--
T ss_pred cHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCCC
Confidence 4789999999999999999999999999999999999999999998888889999999999999999999864
No 7
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.89 E-value=7.5e-23 Score=132.77 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=67.1
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCC
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~ 73 (117)
..+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++...++.++|||++|++|+.|++
T Consensus 4 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 478999999999999999999999999999999999999999999888788999999999999999998874
No 8
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.87 E-value=2.2e-22 Score=134.48 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=66.0
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCc
Q 033530 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75 (117)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id 75 (117)
..++|++++|++|+|+|+||++|+|+|.+||+|||++|+||++..++++...++.++|||++|+||+.||.-.
T Consensus 7 P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~~ 79 (86)
T 3s6n_F 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEE 79 (86)
T ss_dssp HHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC---
T ss_pred cHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCccc
Confidence 5789999999999999999999999999999999999999998876556789999999999999999998754
No 9
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.87 E-value=1.3e-22 Score=137.57 Aligned_cols=72 Identities=26% Similarity=0.295 Sum_probs=63.4
Q ss_pred CchhHHHhhcCCCEEEEEEcCC-cEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCC
Q 033530 1 MKLVRFLMKLNNETVSIELKNG-TIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72 (117)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng-~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd 72 (117)
|.++++|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++.++++...+|.++|||++|+||..|+
T Consensus 20 ~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 20 VNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECC
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 4577899999999999999999 99999999999999999999999987777889999999999999999886
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.87 E-value=4.2e-22 Score=131.14 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=66.4
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCC
Q 033530 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73 (117)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~ 73 (117)
.+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++...++.++|||++|++|+.||.
T Consensus 10 P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 10 AHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 56899999999999999999999999999999999999999999888888999999999999999998874
No 11
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.86 E-value=4.6e-22 Score=129.39 Aligned_cols=71 Identities=28% Similarity=0.339 Sum_probs=65.3
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCC
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd 72 (117)
....+|++++|++|+|+|+||++|+|+|.+||+|||++|+||++..++++...++.++|||++|+||+..|
T Consensus 4 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecC
Confidence 45789999999999999999999999999999999999999999887767789999999999999997654
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.86 E-value=1.4e-21 Score=128.74 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=65.7
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCC
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd 72 (117)
..+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++ ++++...++.++|||++|++|+.||
T Consensus 11 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 11 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred chHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeCC
Confidence 467899999999999999999999999999999999999999999 6667789999999999999999886
No 13
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.86 E-value=1.1e-21 Score=127.90 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=53.9
Q ss_pred hHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCC
Q 033530 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73 (117)
Q Consensus 4 ~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~ 73 (117)
..+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++...+|.++|||++|.+++..|.
T Consensus 6 ~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp --------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred hHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 4689999999999999999999999999999999999999999888888999999999999999988765
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.85 E-value=2.3e-21 Score=128.37 Aligned_cols=69 Identities=26% Similarity=0.331 Sum_probs=65.2
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEE
Q 033530 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69 (117)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~ 69 (117)
+..+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++...++.++|||++|+||+
T Consensus 14 ~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 14 QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp TCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred cChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEE
Confidence 356789999999999999999999999999999999999999999988878899999999999999985
No 15
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.84 E-value=1.2e-20 Score=128.32 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=65.0
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEe-CCCCceeeceEEEecCeEEEEEcC
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL-KGKNPVNLDHLSVRGNNIRYYILP 71 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~-~~~~~~~~~~v~IRG~~I~~I~lp 71 (117)
..+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+. ++++...++.++|||++|.||...
T Consensus 20 ~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 20 LPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEEC
T ss_pred cCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeC
Confidence 4678999999999999999999999999999999999999999998 566788999999999999998643
No 16
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.83 E-value=6.2e-21 Score=136.39 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=74.1
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCcchhhhhh
Q 033530 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVE 82 (117)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id~~~~l~~ 82 (117)
++.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++. + ..++.++|||++|++|+.|+..-..+.|++
T Consensus 1 f~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--~--~~lg~v~IRG~nI~~I~~~d~~~d~~~f~~ 76 (130)
T 1m5q_A 1 FVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--G--EKFNRVFIMYRYIVHIDSTERRIDMREFAK 76 (130)
T ss_dssp CHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--C--CEEEEEEECGGGEEEEEECCCCCCHHHHHH
T ss_pred ChhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--C--CEeceEEEeCCeEEEEEcCCcccCHHHHHH
Confidence 468999999999999999999999999999999999999999873 2 588999999999999999999877788888
Q ss_pred cCccc
Q 033530 83 ETPRV 87 (117)
Q Consensus 83 ~~~~~ 87 (117)
+..|.
T Consensus 77 ~~~r~ 81 (130)
T 1m5q_A 77 QAEKI 81 (130)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 87665
No 17
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-19 Score=123.48 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=63.4
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCC-------CCceeeceEEEecCeEEEEEcCCCC
Q 033530 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG-------KNPVNLDHLSVRGNNIRYYILPDSL 74 (117)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~-------~~~~~~~~v~IRG~~I~~I~lpd~i 74 (117)
...+|++++|++|.|+|+||+.|.|+|.+||+|||++|+||+++..+ .....+|.++|||++|.+|..++..
T Consensus 11 p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp HHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred HHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 46789999999999999999999999999999999999999988642 2347899999999999999988764
No 18
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.80 E-value=7.2e-20 Score=122.52 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=61.5
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEe----------CCCCceeeceEEEecCeEEEEEcCCC
Q 033530 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL----------KGKNPVNLDHLSVRGNNIRYYILPDS 73 (117)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~----------~~~~~~~~~~v~IRG~~I~~I~lpd~ 73 (117)
.+|++++|++|.|+|+||+.|.|+|.+||.|||++|+||+|+. .+.....+|.++|||++|.+|.+++.
T Consensus 7 ~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred HHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 5789999999999999999999999999999999999999964 12235789999999999999988764
No 19
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.79 E-value=5.4e-19 Score=119.51 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=62.3
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCC----C---------CceeeceEEEecCeEEEE
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG----K---------NPVNLDHLSVRGNNIRYY 68 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~----~---------~~~~~~~v~IRG~~I~~I 68 (117)
..+.+|+.++|++|+|+|++|+.|+|+|.+||+|||++|+||+++... + ....+|.++|||++|.+|
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEE
Confidence 357899999999999999999999999999999999999999998642 2 357899999999999998
Q ss_pred EcC
Q 033530 69 ILP 71 (117)
Q Consensus 69 ~lp 71 (117)
..|
T Consensus 89 ~p~ 91 (93)
T 4emg_A 89 APP 91 (93)
T ss_dssp ECC
T ss_pred Eec
Confidence 765
No 20
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.77 E-value=3.7e-19 Score=120.40 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=64.4
Q ss_pred chhHHHhhcCCCEEEEEE----cCCcEEEEEEEEeccccceEEccEEEEeC-CCCceeeceEEEecCeEEEEEcCC
Q 033530 2 KLVRFLMKLNNETVSIEL----KNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPD 72 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeL----kng~~~~G~L~~~D~~MNl~L~da~~~~~-~~~~~~~~~v~IRG~~I~~I~lpd 72 (117)
..+.+|.++++++|+|++ ++|++|+|+|.+||+|||++|+||+|+.. +++...+|.++|||++|.+|+.++
T Consensus 16 ~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred CCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 467899999999999999 99999999999999999999999999974 456689999999999999998664
No 21
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.77 E-value=3.9e-19 Score=125.25 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=63.8
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCC---------C-C-----ceeeceEEEecCeE
Q 033530 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG---------K-N-----PVNLDHLSVRGNNI 65 (117)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~---------~-~-----~~~~~~v~IRG~~I 65 (117)
+..+.+|++++|++|+|+|+||+.|.|+|.+||.|||++|+||+|+..+ + . ...+|.++|||++|
T Consensus 27 ~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nV 106 (121)
T 2fwk_A 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNV 106 (121)
T ss_dssp CCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGE
T ss_pred cCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEE
Confidence 3567899999999999999999999999999999999999999988732 3 2 57899999999999
Q ss_pred EEEEcCCC
Q 033530 66 RYYILPDS 73 (117)
Q Consensus 66 ~~I~lpd~ 73 (117)
.+|...+.
T Consensus 107 v~I~~~~~ 114 (121)
T 2fwk_A 107 AMLVPGGD 114 (121)
T ss_dssp EEEESSSC
T ss_pred EEEEecCC
Confidence 99987543
No 22
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.75 E-value=3.5e-18 Score=119.38 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=56.8
Q ss_pred hHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCC-------CCceeeceEEEecCeEEEEEcCCCC
Q 033530 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG-------KNPVNLDHLSVRGNNIRYYILPDSL 74 (117)
Q Consensus 4 ~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~-------~~~~~~~~v~IRG~~I~~I~lpd~i 74 (117)
+..|.+++|++|.|.|+||+.|.|+|.+||.||||+|+||+|+..+ .....+|.++|||++|.+|..+|..
T Consensus 25 i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 102 (113)
T 4emk_C 25 ILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102 (113)
T ss_dssp -------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC--
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcc
Confidence 4568899999999999999999999999999999999999998653 2468899999999999999988753
No 23
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.75 E-value=3.6e-18 Score=119.74 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=61.4
Q ss_pred chhHHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCC------C--------CceeeceEEEecCeE
Q 033530 2 KLVRFLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG------K--------NPVNLDHLSVRGNNI 65 (117)
Q Consensus 2 ~l~~~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~------~--------~~~~~~~v~IRG~~I 65 (117)
..+.+|+.++ |++|.|+|+||+.|.|+|.+||.|||++|+||+++... + ....+|.+||||++|
T Consensus 27 ~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nV 106 (118)
T 1b34_B 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106 (118)
T ss_dssp CHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGE
T ss_pred ChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEE
Confidence 4678999998 59999999999999999999999999999999988521 1 134699999999999
Q ss_pred EEEEcCCC
Q 033530 66 RYYILPDS 73 (117)
Q Consensus 66 ~~I~lpd~ 73 (117)
.+|..++.
T Consensus 107 v~I~~~~~ 114 (118)
T 1b34_B 107 IVVLRNPL 114 (118)
T ss_dssp EEEEECCC
T ss_pred EEEEeCch
Confidence 99998875
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.71 E-value=5e-17 Score=125.57 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=61.9
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeC----------CCCceeeceEEEecCeEEEEEcCCC
Q 033530 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----------GKNPVNLDHLSVRGNNIRYYILPDS 73 (117)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~----------~~~~~~~~~v~IRG~~I~~I~lpd~ 73 (117)
..|++++|++|+|+|+||++|+|+|.+||.||||+|+||+|+.. ..+...++.++|||+||.+|.+.+-
T Consensus 7 ~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~p 85 (231)
T 3pgw_B 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (231)
T ss_pred HHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecCC
Confidence 47899999999999999999999999999999999999999752 2356899999999999999998654
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.94 E-value=3.8e-09 Score=70.56 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=57.2
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEec-cccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCcch
Q 033530 5 RFLMKLNNETVSIELKNGTIVHGTITGVD-ISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLE 77 (117)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~~~~G~L~~~D-~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id~~ 77 (117)
..|++++||+|.|.|.||++|+|.|.++| ...|++|.|+ ..+ ..+..++|.|+.|+.|.+-+.-+.+
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---~~~---~~~~~~iI~G~aI~eI~v~~~~~~~ 77 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---LED---GSMSVTGIMGHAVQTVETMNEGDHR 77 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---CTT---SCEEEEEECGGGEEEEEEEECCCHH
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---ccC---CeEEEEEEecceEEEEEEecchhHH
Confidence 36899999999999999999999999999 8899999999 222 3568999999999998876655443
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.03 E-value=0.0058 Score=40.63 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=53.8
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEec-cccceEEccEEEEeCCCC---------ceeeceEEEecCeEEEEEcCCC
Q 033530 9 KLNNETVSIELKNGTIVHGTITGVD-ISMNTHLKTVKLTLKGKN---------PVNLDHLSVRGNNIRYYILPDS 73 (117)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D-~~MNl~L~da~~~~~~~~---------~~~~~~v~IRG~~I~~I~lpd~ 73 (117)
.++|+++.+--|.+..|+|+|..+| +.--+.|+||.-.-.++. ..-++-+..||+-|+-+.+-+.
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 4689999999999999999999999 557899999987754332 2357899999999999877543
No 27
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.63 E-value=0.006 Score=42.90 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=41.2
Q ss_pred HhhcCCCEEEEEEcCCcEEEEEEEEeccccceEE--ccEEEEeCCCCceeeceEEEecCeEEEEEcC
Q 033530 7 LMKLNNETVSIELKNGTIVHGTITGVDISMNTHL--KTVKLTLKGKNPVNLDHLSVRGNNIRYYILP 71 (117)
Q Consensus 7 L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L--~da~~~~~~~~~~~~~~v~IRG~~I~~I~lp 71 (117)
+..++|..|.|+|++|..++|++..+|. -+|+| .+|... ..-|+.+.|.-+.+-
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s----------~~~I~asdI~DLkVl 62 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLANDS----------TKSIVTKDIKDLRIL 62 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTTE----------EEEEEGGGEEEEEEC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEeccccccc----------cceeecccccceeee
Confidence 3567899999999999999999999983 35555 988411 117889888866543
No 28
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.61 E-value=0.0049 Score=41.52 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=52.9
Q ss_pred hhcCCCEEEEEEcCCcEEEEEEEEec-cccceEEccEEEEeCCCC---------ceeeceEEEecCeEEEEEcCC
Q 033530 8 MKLNNETVSIELKNGTIVHGTITGVD-ISMNTHLKTVKLTLKGKN---------PVNLDHLSVRGNNIRYYILPD 72 (117)
Q Consensus 8 ~~l~gk~V~VeLkng~~~~G~L~~~D-~~MNl~L~da~~~~~~~~---------~~~~~~v~IRG~~I~~I~lpd 72 (117)
..++|+++.+--|.+..|+|+|..+| +.--+.|+||.-...++. ..-++-+..||+-|+-+.+-+
T Consensus 15 ~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 15 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp -CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 46899999999999999999999999 567899999986643322 235788999999999987743
No 29
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.60 E-value=0.013 Score=38.75 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=54.7
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEec-cccceEEccEEEEeCCCCceeeceEEEecCeEEEEEc
Q 033530 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVD-ISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYIL 70 (117)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D-~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~l 70 (117)
+++.+|.++.|++|.+.|.++.++.|+-.++| +..|+..++-. ++=| .+++..+|++-|..+.+
T Consensus 19 RfLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~--TPiG---v~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 19 RYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ--TPIG---VQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC--CTTC---CEEEEEEEGGGEEEEEE
T ss_pred HHHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC--CCcc---cchhhhhhcCCEEEEEe
Confidence 36788999999999999999999999999999 56899888765 4433 47899999999998865
No 30
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.55 E-value=0.0055 Score=40.40 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=50.0
Q ss_pred hhcCCCEEEEEEcCCc-EEEEEEEEeccc-cceEEccEEEEeCCCCceeeceEEEecCeEEEEEc
Q 033530 8 MKLNNETVSIELKNGT-IVHGTITGVDIS-MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYIL 70 (117)
Q Consensus 8 ~~l~gk~V~VeLkng~-~~~G~L~~~D~~-MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~l 70 (117)
.+.+|+.|.|+.+++. .|+|.|..+|.. -||.|.+|. .+|-+-....+.++++-|.-+.+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVKCLVPEVTFRAGDITELKI 66 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEECSSSEEEEEGGGCSEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCCCCCcEEEEEecChhheEE
Confidence 3679999999999998 999999999965 689999995 45655566789999998776554
No 31
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.40 E-value=0.0032 Score=41.37 Aligned_cols=53 Identities=23% Similarity=0.170 Sum_probs=40.9
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCcc
Q 033530 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNL 76 (117)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id~ 76 (117)
.+.+|+|-|.||..++|.+.+||.|+=+.- + + ...+|-=..|..|.....+++
T Consensus 18 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~-~------~------~qqLVYKHAISTI~p~~~v~l 70 (82)
T 1u1s_A 18 ERVPVSIYLVNGIKLQGQIESFDQFVILLK-N------T------VSQMVYKHAISTVVPSRPVRL 70 (82)
T ss_dssp TTCCEEEEETTSCEEEEEEEEECSSEEEEE-S------S------SCEEEEGGGEEEEEESSCCCC
T ss_pred cCCcEEEEEeCCcEEEEEEEEEcceEEEEe-c------C------ceEEEEeeeeEEEeecccccc
Confidence 478999999999999999999999985543 1 1 245677888888866555543
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.35 E-value=0.016 Score=37.46 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=40.5
Q ss_pred HHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCC
Q 033530 6 FLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74 (117)
Q Consensus 6 ~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~i 74 (117)
||+.+. +.+|+|.|.||..++|++.++|.|+=+.-.+ | ...+|-=..|.+|.....+
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~-------g-----~~qLIYKhAISTI~p~~~v 69 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ-------G-----KQHLIYKHAISTYTVETEG 69 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET-------T-----EEEEEEGGGEEEEEC----
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC-------C-----eeEEEEeeeEEEEeECccc
Confidence 455554 8899999999999999999999998554322 2 2356778888887554444
No 33
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.32 E-value=0.015 Score=37.75 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCcc
Q 033530 6 FLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNL 76 (117)
Q Consensus 6 ~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id~ 76 (117)
||+.+. +.+|+|-|.||..++|.+.+||.|+=+.-. +| ...+|-=..|..|.....+++
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~-------~g-----~qqlIYKhAISTI~p~~~v~l 75 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLES-------EG-----KQQLIYKHAISTFAPQKNVQL 75 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEES-------SS-----CEEEEEGGGEEEEEESSCCCC
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEE-------CC-----eeEEEEcceEEEEeecccccc
Confidence 344444 789999999999999999999999865532 22 234677778888765554543
No 34
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.28 E-value=0.023 Score=36.45 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCc
Q 033530 6 FLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75 (117)
Q Consensus 6 ~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id 75 (117)
||+.+. +.+|+|.|.||..++|.+.++|.|+=+.- + + ...+|.=..|.+|.....++
T Consensus 13 ~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~-~-------~-----~~~LIYKhAIsTI~p~~~v~ 71 (74)
T 2ylb_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK-N-------T-----VSQMVYKHAISTVVPSRPVS 71 (74)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE-S-------S-----SEEEEEGGGEEEEEESSCCC
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE-C-------C-----ceEEEEeeeEEEEeEccccc
Confidence 444444 78999999999999999999999975443 2 1 34678888899886555443
No 35
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.87 E-value=0.019 Score=36.67 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=27.3
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEeccccceEE
Q 033530 10 LNNETVSIELKNGTIVHGTITGVDISMNTHL 40 (117)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L 40 (117)
..+.+|+|-|.||..++|.+.+||.|+=+.-
T Consensus 23 ~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~ 53 (71)
T 2qtx_A 23 LNGKKVKIFLRNGEVLDAEVTGVSNYEIMVK 53 (71)
T ss_dssp GTTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 3678999999999999999999999986553
No 36
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.83 E-value=0.0061 Score=41.67 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=40.4
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCcc
Q 033530 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNL 76 (117)
Q Consensus 12 gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id~ 76 (117)
..+|+|.|.||..++|++.+||.|+=+.-.+ ...+|-=..|.+|.....+++
T Consensus 21 k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~-------------kqqLIYKHAISTI~p~~~v~l 72 (104)
T 2y90_A 21 RVPVSIYLVNGIKLQGQIESFDQFVILLKNT-------------VSQMVYKHAISTVVPSRPVSH 72 (104)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEEESS-------------SEEEEEGGGEEEEEESSCCC-
T ss_pred CCcEEEEEeCCCEEEEEEEEECCcEEEEECC-------------ceEEEEeeeeEEEeecccccc
Confidence 4599999999999999999999998554311 346788889999876665644
No 37
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=95.34 E-value=0.019 Score=37.38 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEcCCCCcc
Q 033530 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNL 76 (117)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~lpd~id~ 76 (117)
.+.+|+|.|.||..++|.+.++|.|+=+. + ++ ...+|-=..|.+|.....+++
T Consensus 19 ~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~-------~g-----~~qLIYKhAISTI~P~~~v~~ 71 (79)
T 3sb2_A 19 EHVPVSIYLVNGIKLQGHVESFDQYVVLL-R-------NT-----VTQMVYKHAISTVVPARAVNL 71 (79)
T ss_dssp TTCCEEEEETTSCEEEEEEEEECSSEEEE-E-------SS-----SEEEEEGGGEEEEEESSCCCC
T ss_pred cCCeEEEEEeCCCEEEEEEEEECCcEEEE-E-------CC-----ceEEEEeeeEEEEeecCceec
Confidence 46679999999999999999999998554 2 22 235788889999866655654
No 38
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.25 E-value=0.26 Score=30.95 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=44.3
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEEc
Q 033530 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYIL 70 (117)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~l 70 (117)
|=+.|.+-.|++|-+-...+..+.|+|..||+-. +.|+|++-... ++-..+.++=+-|..|.+
T Consensus 7 LdktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~G----Nk~k~liv~idDinWimL 69 (71)
T 1ycy_A 7 LEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIG----NRGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTE----EEEEEEEEEGGGEEEEEE
T ss_pred HHHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhc----cccceeEEEeccceEEEe
Confidence 4467888999999999999999999999999764 77899985532 233456666666666544
No 39
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=92.72 E-value=0.66 Score=31.30 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=49.3
Q ss_pred hhcCCCEEEEEEcCCc-EEEEEEEEeccccceEEccEEEEeCCCC--ceeeceEEEecCeEEEEEc
Q 033530 8 MKLNNETVSIELKNGT-IVHGTITGVDISMNTHLKTVKLTLKGKN--PVNLDHLSVRGNNIRYYIL 70 (117)
Q Consensus 8 ~~l~gk~V~VeLkng~-~~~G~L~~~D~~MNl~L~da~~~~~~~~--~~~~~~v~IRG~~I~~I~l 70 (117)
+..+|+.|+|...+.. .|+|.+..+|. -+|.|.+|. .+|- +....++.++..-|.-+.+
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaF---rNGiplk~~~~EVtLsa~DI~~L~I 69 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAF---RNGVPLRKQNAEVVLKCTDIRSIDL 69 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEE---ETTEECSCSSSCEEEETTTEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhh---hcCcCcCCCCceEEEEecchhheee
Confidence 3679999999999996 99999999995 449999887 4665 5567889999999987765
No 40
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=89.30 E-value=0.61 Score=29.53 Aligned_cols=46 Identities=26% Similarity=0.254 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEE
Q 033530 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYY 68 (117)
Q Consensus 12 gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I 68 (117)
..+|.|+|.+|..++|.+.-.|++.=..-.+ ++ ...+|.-..|.||
T Consensus 21 k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~------~~-----~~~LI~r~AI~~I 66 (70)
T 3hfo_A 21 QTPVEIKLLTGDSLFGTIRWQDTDGLGLVDD------SE-----RSTIVRLAAIAYI 66 (70)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSEEEEECT------TC-----CEEEEEGGGEEEE
T ss_pred CceEEEEecCCCEEEEEEEEeCCCEEEEEcC------CC-----CeEEEEeeeeEEE
Confidence 5799999999999999999999986443322 12 2345666677775
No 41
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=83.73 E-value=6.3 Score=24.89 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCeEEEEE
Q 033530 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69 (117)
Q Consensus 12 gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~ 69 (117)
..+|.|+|.+|..++|.+.-.|++.=..- +.. + ...+|.-..|.||.
T Consensus 23 k~~V~I~L~tGd~l~G~i~WQD~~cl~L~-~~~-----~-----~~~LI~R~AI~~Ik 69 (72)
T 3hfn_A 23 AAPVEIKLVTGDAITGRVLWQDPTCVCIA-DEN-----S-----RQTTIWKQAIAYLQ 69 (72)
T ss_dssp CCEEEEEETTSCEEEEEEEEECSSEEEEE-C-------------CEEEEEGGGEEEEE
T ss_pred CceEEEEecCCCEEEEEEEEECCCEEEEE-cCC-----C-----CeEEEEeeeeEEEE
Confidence 57899999999999999999998863333 221 1 23667777777763
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=83.63 E-value=1.5 Score=33.45 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=30.4
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 033530 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKT 42 (117)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~d 42 (117)
...|++|++.+.+|.+++|+..++|+.-.+.++.
T Consensus 221 ~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 221 LTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp SSTTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cccCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 3579999999988999999999999999998864
No 43
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=82.66 E-value=1.4 Score=31.56 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHhhcCCCEEEEEEc----CCcEEEEEEEEeccc
Q 033530 5 RFLMKLNNETVSIELK----NGTIVHGTITGVDIS 35 (117)
Q Consensus 5 ~~L~~l~gk~V~VeLk----ng~~~~G~L~~~D~~ 35 (117)
.-+..++|+.|.|.|+ +.+.++|+|.++|+.
T Consensus 97 ~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 97 DAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 4467889999999994 459999999999965
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=74.65 E-value=2 Score=31.98 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=33.7
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCC-CceeeceEEEec
Q 033530 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK-NPVNLDHLSVRG 62 (117)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~-~~~~~~~v~IRG 62 (117)
...|++|++...++ ++|+..++|+.-.+.+++. +| +....+++.+|+
T Consensus 185 ~~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~-----~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 185 LYLGEEVKLLGEGK--ITGKLVGLSEKGGALILTE-----EGIKEILSGEFSLRR 232 (233)
T ss_dssp TTTTSEEEETTEEE--EEEEEEEECTTSCEEEEET-----TEEEEECSCCEEEC-
T ss_pred cccCCEEEEEECCe--EEEEEEEECCCCeEEEEEC-----CCeEEEEEeEEEEec
Confidence 35799999987665 9999999999999988642 12 223446666664
No 45
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=68.55 E-value=5 Score=26.69 Aligned_cols=24 Identities=38% Similarity=0.715 Sum_probs=18.6
Q ss_pred HhhcCC-CEEEEEEcCCcEEEEEEE
Q 033530 7 LMKLNN-ETVSIELKNGTIVHGTIT 30 (117)
Q Consensus 7 L~~l~g-k~V~VeLkng~~~~G~L~ 30 (117)
+..+-| .+|.++|.||+.+.|++.
T Consensus 22 ~~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 22 VKLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HHTSCTTCEEEEEETTSCEEEEEES
T ss_pred HHhhCCeeEEEEEEcCCCeEeeeec
Confidence 333444 489999999999999973
No 46
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=67.84 E-value=8 Score=23.51 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 033530 11 NNETVSIELKNGTIVHGTITGVDIS 35 (117)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (117)
.|..|.+.-.||+.|-|++..+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 5899999999999999999999865
No 47
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=67.35 E-value=4.3 Score=33.47 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=31.8
Q ss_pred CchhHHHhhcC---CCEEEEEEcCC---cEEEEEEEE-ec----cccceEEcc
Q 033530 1 MKLVRFLMKLN---NETVSIELKNG---TIVHGTITG-VD----ISMNTHLKT 42 (117)
Q Consensus 1 m~l~~~L~~l~---gk~V~VeLkng---~~~~G~L~~-~D----~~MNl~L~d 42 (117)
|+...+|.+.- |.+|.|+.++| .+|+|+|+- .+ ++.=|.|+|
T Consensus 1 ~~~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~ 53 (438)
T 1zq1_A 1 MRVDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLEN 53 (438)
T ss_dssp -CHHHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETT
T ss_pred CchHHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccC
Confidence 67788888776 99999999998 899999993 33 455555543
No 48
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=66.76 E-value=9 Score=28.41 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=28.4
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 033530 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKT 42 (117)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~d 42 (117)
..|++|++...++..++|+..++|+.-.+. ++
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 589999999988877999999999998887 53
No 49
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=58.34 E-value=14 Score=28.44 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=34.2
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCC-CceeeceEEEec
Q 033530 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK-NPVNLDHLSVRG 62 (117)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~-~~~~~~~v~IRG 62 (117)
...|++|++...+ ..++|+..++|+.-.+.+++. +| .....|++.+|+
T Consensus 270 ~~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~~-----~g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 270 NFINRPVKLIIGD-KEIFGISRGIDKQGALLLEQD-----GIIKPWMGGEISLRS 318 (321)
T ss_dssp TTTTSEEEEEETT-EEEEEEEEEECTTSCEEEEET-----TEEEEESSCEEEEC-
T ss_pred hhcCCEEEEEECC-cEEEEEEEEECCCCeEEEEEC-----CCEEEEEeeeEEEec
Confidence 4579999998765 579999999999999988642 22 123446666653
No 50
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=57.72 E-value=15 Score=22.80 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 033530 11 NNETVSIELKNGTIVHGTITGVDIS 35 (117)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (117)
+|..|...-.||..|.|++.+++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 6889999999999999999999974
No 51
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=56.80 E-value=8.3 Score=28.65 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 033530 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKT 42 (117)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~d 42 (117)
.|++|++...++ ++|+..++|+.-.+.+++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998877 999999999999999864
No 52
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=56.09 E-value=18 Score=24.79 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=25.5
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEec--cccceEEcc
Q 033530 10 LNNETVSIELKNGTIVHGTITGVD--ISMNTHLKT 42 (117)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D--~~MNl~L~d 42 (117)
.+|++|..+-+||+.|+|++.+.. .|-.+...|
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~D 41 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDD 41 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETT
T ss_pred ccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCC
Confidence 479999999999999999998876 333444443
No 53
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=55.05 E-value=19 Score=22.49 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.4
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEec
Q 033530 10 LNNETVSIELKNGTIVHGTITGVD 33 (117)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D 33 (117)
.+|+.|.++-.||..|-|+++...
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEC
T ss_pred ccCCeEEEEecCCCEEEEEEEecC
Confidence 368999999999999999995433
No 54
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=53.13 E-value=6.2 Score=25.50 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.1
Q ss_pred HhhcCCCEEEEEEcCCcEEEEEEE
Q 033530 7 LMKLNNETVSIELKNGTIVHGTIT 30 (117)
Q Consensus 7 L~~l~gk~V~VeLkng~~~~G~L~ 30 (117)
+-.+.+.+|.|+|+||.+++|+..
T Consensus 20 lAc~~~~~l~l~l~dGe~~~g~a~ 43 (86)
T 1sg5_A 20 LACQHHLMLTLELKDGEKLQAKAS 43 (86)
T ss_dssp HHHTTTTCEEEECTTTCCEEESSC
T ss_pred HHHHcCCeEEEEEeCCCEEEEEEE
Confidence 445678999999999999999654
No 55
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=52.96 E-value=15 Score=25.82 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=47.6
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEccEEEEeCCCCceeeceEEEecCe------EEEEEcCCCCcchhhhhh
Q 033530 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN------IRYYILPDSLNLETLLVE 82 (117)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~~~~~~~~~~v~IRG~~------I~~I~lpd~id~~~~l~~ 82 (117)
+.+-+-+.|.|+||.++.--+=+. +....+.+.++|||-. |+|=.+--.+|...+-.+
T Consensus 50 SA~RK~arVrL~ngk~VtAyIPG~----------------GhnlqEhs~VLVrGgrv~DlPGVrykvVrG~lD~~gv~~R 113 (135)
T 2vqe_L 50 SALRKVAKVRLTSGYEVTAYIPGE----------------GHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDR 113 (135)
T ss_dssp CCCEECCEEEETTSCEEEEECCSS----------------CCCCCTTCEEEEEECCCTTSTTCCEEECTTSTTSCCCTTC
T ss_pred hhheeEEEEEcCCCCEEEEEcCCC----------------CCccCcCCEEEEcCCCcCCCCCeeEEEEeEeecCcccccc
Confidence 345566778888887654322221 1123456788888875 677778888999999888
Q ss_pred cCcccCCCCCCCC
Q 033530 83 ETPRVKPKKPTAG 95 (117)
Q Consensus 83 ~~~~~~~~~~~~~ 95 (117)
.+.+++++.+..+
T Consensus 114 ~~~RSkYG~Kkpk 126 (135)
T 2vqe_L 114 KKSRSKYGTKKPK 126 (135)
T ss_dssp CSSGGGGTCCCCC
T ss_pred cccccccccCCCc
Confidence 8888888655433
No 56
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.21 E-value=21 Score=22.27 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 033530 11 NNETVSIELKNGTIVHGTITGVDIS 35 (117)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (117)
+|+.|..+=.||..|-|++..+|..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 6899999999999999999999954
No 57
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=51.59 E-value=7.1 Score=25.11 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.7
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEeccc
Q 033530 10 LNNETVSIELKNGTIVHGTITGVDIS 35 (117)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D~~ 35 (117)
..|+-|.++-+||+.|-|++..+|..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccC
Confidence 36899999999999999999999965
No 58
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=49.12 E-value=18 Score=27.18 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHhhcCCCEEEEEEcCCcEEEEEEEEecccc
Q 033530 6 FLMKLNNETVSIELKNGTIVHGTITGVDISM 36 (117)
Q Consensus 6 ~L~~l~gk~V~VeLkng~~~~G~L~~~D~~M 36 (117)
+=+.|+|+.+.-++.+|..+.|.|+++..|+
T Consensus 19 vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 19 LARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 4467999999999999999999999999887
No 59
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=47.89 E-value=20 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=27.3
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 033530 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKT 42 (117)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~d 42 (117)
...|++|++... +..++|+..++|+.-.+.+++
T Consensus 276 ~~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 276 NIWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SCSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hhcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 357999999865 567999999999999998864
No 60
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=44.50 E-value=30 Score=25.32 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.0
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 033530 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKT 42 (117)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~d 42 (117)
...|++|++ +| ++|+..++|+.-.+.++.
T Consensus 191 ~~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 191 HGMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hhcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 457999999 45 999999999999999864
No 61
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=43.46 E-value=69 Score=21.20 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=41.9
Q ss_pred EEEEcCCcEEEEEEEEeccccceEEccEEEEeC----CC-----------CceeeceEEEecCeEEEEEcC
Q 033530 16 SIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----GK-----------NPVNLDHLSVRGNNIRYYILP 71 (117)
Q Consensus 16 ~VeLkng~~~~G~L~~~D~~MNl~L~da~~~~~----~~-----------~~~~~~~v~IRG~~I~~I~lp 71 (117)
.|+|++|..+-|.+..-|+. +.++|+....+ +| ....-+.+.||.+.|.++.-+
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~ 75 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSP 75 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECB
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeC
Confidence 58999999999999987764 88899876643 11 124568899999999998766
No 62
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=42.74 E-value=50 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=22.6
Q ss_pred cCCcEEEEEE---EEeccccceEEccEEEEeC
Q 033530 20 KNGTIVHGTI---TGVDISMNTHLKTVKLTLK 48 (117)
Q Consensus 20 kng~~~~G~L---~~~D~~MNl~L~da~~~~~ 48 (117)
++..++.|.| .-+|+.+.+.|+|++....
T Consensus 56 ksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 56 QSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred ccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 4446667777 4679999999999998754
No 63
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.89 E-value=23 Score=21.74 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 033530 11 NNETVSIELKNGTIVHGTITGVDIS 35 (117)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (117)
+|+.|..+=.||..|-|++..+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 6899999999999999999999965
No 64
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}
Probab=41.08 E-value=55 Score=19.47 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=25.9
Q ss_pred cceEEccEEEEeCCCCceeeceEEEecCeEEEEE
Q 033530 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69 (117)
Q Consensus 36 MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~ 69 (117)
+.+.+.|+.+.+.++.......+.|++..|..|.
T Consensus 4 ~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig 37 (81)
T 3ggm_A 4 PDMILYNGKITTLDPSQPEVSAIAITDGLITAVG 37 (81)
T ss_dssp CSEEEESSEEECSCTTCSEESEEEEETTEEEEEE
T ss_pred CCEEEECCEEEeCCCCCccccEEEEECCEEEEEe
Confidence 4577888888876554334678999999999985
No 65
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=40.47 E-value=70 Score=21.37 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=22.1
Q ss_pred cCCcEEEEEE---EEeccccceEEccEEEEeC
Q 033530 20 KNGTIVHGTI---TGVDISMNTHLKTVKLTLK 48 (117)
Q Consensus 20 kng~~~~G~L---~~~D~~MNl~L~da~~~~~ 48 (117)
++..++.|.| ..+|+-+.+.|+|++....
T Consensus 52 ksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~~ 83 (108)
T 1nvp_D 52 RNRVNFRGSLNTYRFCDNVWTFVLNDVEFREV 83 (108)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEECS
T ss_pred ccCCeEeeccCCccccCcEEEEEEeceEEEec
Confidence 3445666766 4689999999999998754
No 66
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=38.10 E-value=45 Score=21.76 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHhhcCCCEEEEEEcCCc----EEEEEEEEeccc
Q 033530 5 RFLMKLNNETVSIELKNGT----IVHGTITGVDIS 35 (117)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~----~~~G~L~~~D~~ 35 (117)
.-|.+.+|++|.+..+.|+ +-+|+|...=+.
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~etYPS 52 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEVYPS 52 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEECSS
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEecCc
Confidence 4578899999999999994 678999876543
No 67
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=36.21 E-value=49 Score=25.10 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=26.3
Q ss_pred EeccccceEEccEEEEeCCCC-ceeeceEEEecCeEEEEE
Q 033530 31 GVDISMNTHLKTVKLTLKGKN-PVNLDHLSVRGNNIRYYI 69 (117)
Q Consensus 31 ~~D~~MNl~L~da~~~~~~~~-~~~~~~v~IRG~~I~~I~ 69 (117)
+.|..|.+.+.|+.+.+.++. ...-+.+.|+|..|..|.
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg 41 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIK 41 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEE
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEe
Confidence 567888999999988876543 334468999999999884
No 68
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=32.42 E-value=34 Score=26.80 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.4
Q ss_pred hhcCCCEEEEEEcCCcEEEEEEEEe
Q 033530 8 MKLNNETVSIELKNGTIVHGTITGV 32 (117)
Q Consensus 8 ~~l~gk~V~VeLkng~~~~G~L~~~ 32 (117)
+.+.|++|+|..++|..|.|++-..
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC--
T ss_pred cccCCCEEEEEcCCCCEEEEEEeCc
Confidence 4578999999999999999988543
No 69
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=31.28 E-value=64 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.5
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
..+.|.+.+|+.|.+++...|...+|.|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999998877554
No 70
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=30.66 E-value=63 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=27.2
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
..+.|.+.+|++|.+++.+.|...+|.+-.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999999876544
No 71
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=28.80 E-value=44 Score=27.36 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=26.6
Q ss_pred hHHHhhcC---CCEEEEEEcCCcEEEEEEEE-ec----cccceEEcc
Q 033530 4 VRFLMKLN---NETVSIELKNGTIVHGTITG-VD----ISMNTHLKT 42 (117)
Q Consensus 4 ~~~L~~l~---gk~V~VeLkng~~~~G~L~~-~D----~~MNl~L~d 42 (117)
..+|.+.- |.+|.|+.++ .+|+|+|+- .+ ++.=|.|+|
T Consensus 8 ~~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~kl~~ 53 (435)
T 2d6f_A 8 RKFLESASIDVGDMVLVEKPD-VTYEGMVLDRADDADDRHIVLKLEN 53 (435)
T ss_dssp HHHHHTTTCCTTCEEEEECSS-CEEEEEECCCCTTSCSSEEEEECTT
T ss_pred HHHHHHcCCCCCCEEEEEECC-eEEEEEEecCcccCCCCeEEEEccC
Confidence 45666555 9999999876 999999993 33 444455543
No 72
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}
Probab=28.17 E-value=73 Score=24.14 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=25.1
Q ss_pred cceEEccEEEEeCCCCceeeceEEEecCeEEEEE
Q 033530 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69 (117)
Q Consensus 36 MNl~L~da~~~~~~~~~~~~~~v~IRG~~I~~I~ 69 (117)
|.+.++|+.+.+.++.... +.+.|++..|..|.
T Consensus 5 ~~~~i~~~~i~~~~~~~~~-~~v~i~~g~I~~i~ 37 (396)
T 3ooq_A 5 VKILFKNATVFPITSRPFK-GDVLVSNGKVEKVG 37 (396)
T ss_dssp -CEEEEEEEECCSSSCCEE-EEEEEETTEEEEEE
T ss_pred ceEEEECcEEEeCCCCeEE-eEEEEECCEEEEec
Confidence 5678889888876655555 88899999998875
No 73
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=27.19 E-value=1.1e+02 Score=18.64 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 033530 11 NNETVSIELKNGTIVHGTITGVDIS 35 (117)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (117)
+|.+|...=.|++.|.+++.+++..
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 6888888888999999999999976
No 74
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=26.56 E-value=75 Score=24.51 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.6
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
..+.|.+.+|+.+.+++...|...+|.|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4788999999999999999999988776544
No 75
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=25.78 E-value=1.6e+02 Score=20.25 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=15.6
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEe
Q 033530 5 RFLMKLNNETVSIELKNGTIVHGTITGV 32 (117)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~~~~G~L~~~ 32 (117)
.+|.+++|++|++- |++.++
T Consensus 36 s~L~~fvGk~VriV--------GkV~~~ 55 (142)
T 2pi2_E 36 GMLAQFIDKPVCFV--------GRLEKI 55 (142)
T ss_dssp GGGGGSTTCEEEEE--------EEEEEE
T ss_pred HHHHhhCCCEEEEE--------EEEeEE
Confidence 57889999999876 666666
No 76
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=25.68 E-value=95 Score=22.25 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 12 gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
...+.|.+.+|..+.+++..+|...+|.|-.+
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 35789999999999999999999888777443
No 77
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=25.61 E-value=72 Score=23.45 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.1
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
..+.|.+.+|+.+.+++...|...+|.|-.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4688999999999999999999888776544
No 78
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=25.49 E-value=1e+02 Score=21.57 Aligned_cols=33 Identities=9% Similarity=-0.057 Sum_probs=25.4
Q ss_pred ceEEccEEEEeCC-CCceeeceEEEecCeEEEEE
Q 033530 37 NTHLKTVKLTLKG-KNPVNLDHLSVRGNNIRYYI 69 (117)
Q Consensus 37 Nl~L~da~~~~~~-~~~~~~~~v~IRG~~I~~I~ 69 (117)
.++|+|+.+.+.+ ++...-..+.|++..|..|.
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig 38 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVS 38 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEE
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECCEEEEec
Confidence 5788999988764 34455568999999999985
No 79
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=25.36 E-value=1.4e+02 Score=19.65 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.1
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEecc
Q 033530 5 RFLMKLNNETVSIELKNGTIVHGTITGVDI 34 (117)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~~~~G~L~~~D~ 34 (117)
..|+++.|++|++- |++.++|.
T Consensus 11 ~~L~~~~g~~Vriv--------GkV~~~~g 32 (114)
T 4gop_A 11 SMLGQYVGQTVRIV--------GKVHKVTG 32 (114)
T ss_dssp TTGGGGTTSEEEEE--------EEEEEEET
T ss_pred HHHHhhCCCeEEEE--------EEEeeeCC
Confidence 46888999999875 88888886
No 80
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=23.98 E-value=1e+02 Score=22.02 Aligned_cols=31 Identities=13% Similarity=0.384 Sum_probs=26.6
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
..+.|.+.+|..+.+++...|...+|.|-.+
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999888776443
No 81
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=23.94 E-value=1.5e+02 Score=19.00 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=23.3
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEeccc
Q 033530 10 LNNETVSIELKNGTIVHGTITGVDIS 35 (117)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D~~ 35 (117)
.+|.+|.-.-.|++.|-+++.+++..
T Consensus 23 ~vGd~VlArW~D~~yYPAkI~sV~~~ 48 (85)
T 3qii_A 23 QINEQVLACWSDCRFYPAKVTAVNKD 48 (85)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT
T ss_pred ccCCEEEEEeCCCCEeeEEEEEECCC
Confidence 46889998888999999999999976
No 82
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=23.28 E-value=49 Score=24.34 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=15.0
Q ss_pred cCCCEEEEEEcCCcEEEEEEEE
Q 033530 10 LNNETVSIELKNGTIVHGTITG 31 (117)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~ 31 (117)
..|..|.|.+.+|+.++|++.+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 4677777777777777776643
No 83
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=22.34 E-value=77 Score=25.46 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=27.2
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
..+.|.+.+|+.|.+++...|...+|.|-.+
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4789999999999999999999998877554
No 84
>3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified}
Probab=21.72 E-value=1.5e+02 Score=22.09 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=23.8
Q ss_pred cceEEccEEEE-eCCC--CceeeceEEEecCeEEEEE
Q 033530 36 MNTHLKTVKLT-LKGK--NPVNLDHLSVRGNNIRYYI 69 (117)
Q Consensus 36 MNl~L~da~~~-~~~~--~~~~~~~v~IRG~~I~~I~ 69 (117)
-.|.++|+.+. +.|+ ....-+.+.|+|..|..|.
T Consensus 29 ~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG 65 (479)
T 3hpa_A 29 KTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVG 65 (479)
T ss_dssp CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEE
T ss_pred CCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEe
Confidence 35889999754 3333 3334468999999999984
No 85
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=21.18 E-value=1.2e+02 Score=22.97 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.6
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
..+.|.+.+|..+.+++..+|...+|.|-.+
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 5789999999999999999998888777544
No 86
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=20.18 E-value=1.6e+02 Score=18.07 Aligned_cols=35 Identities=6% Similarity=0.201 Sum_probs=26.5
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEccE
Q 033530 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (117)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNl~L~da 43 (117)
...+..|.+...+-..++|.+..+|+.+=+.+.+.
T Consensus 46 ~~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~~~ 80 (84)
T 1o9y_A 46 GISPGHATLCHGEQVVAEGELVDVEGRLGLQITRL 80 (84)
T ss_dssp SSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 44577888888778888999998888776666543
Done!