Query 033531
Match_columns 117
No_of_seqs 110 out of 727
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13881 Rad60-SLD_2: Ubiquiti 100.0 1.3E-31 2.8E-36 185.3 10.4 110 6-115 1-111 (111)
2 cd01814 NTGP5 Ubiquitin-like N 100.0 8.5E-32 1.8E-36 185.8 8.2 111 4-114 1-113 (113)
3 cd01807 GDX_N ubiquitin-like d 99.8 3.6E-19 7.9E-24 113.9 7.5 73 8-94 1-73 (74)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 8.3E-19 1.8E-23 112.3 7.2 73 8-96 1-73 (74)
5 cd01794 DC_UbP_C dendritic cel 99.8 8.5E-19 1.9E-23 111.9 6.1 69 10-92 1-69 (70)
6 cd01790 Herp_N Homocysteine-re 99.8 1.3E-18 2.8E-23 113.9 7.0 74 8-92 2-78 (79)
7 cd01802 AN1_N ubiquitin-like d 99.8 2.2E-18 4.8E-23 117.6 7.7 77 6-96 26-102 (103)
8 cd01797 NIRF_N amino-terminal 99.8 2.4E-18 5.2E-23 111.9 7.3 75 8-96 1-77 (78)
9 cd01810 ISG15_repeat2 ISG15 ub 99.7 4.7E-18 1E-22 108.8 6.8 73 10-96 1-73 (74)
10 PTZ00044 ubiquitin; Provisiona 99.7 5.9E-18 1.3E-22 108.2 6.9 75 8-96 1-75 (76)
11 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 8E-18 1.7E-22 108.4 7.1 70 8-91 2-71 (73)
12 cd01798 parkin_N amino-termina 99.7 5.6E-18 1.2E-22 107.2 6.2 70 10-93 1-70 (70)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 4.8E-17 1E-21 103.3 8.0 75 8-96 1-75 (76)
14 cd01804 midnolin_N Ubiquitin-l 99.7 8.2E-17 1.8E-21 104.4 7.6 73 8-95 2-74 (78)
15 cd01803 Ubiquitin Ubiquitin. U 99.7 8.7E-17 1.9E-21 102.1 7.1 75 8-96 1-75 (76)
16 cd01805 RAD23_N Ubiquitin-like 99.7 1.3E-16 2.9E-21 102.0 7.8 65 8-80 1-67 (77)
17 cd01808 hPLIC_N Ubiquitin-like 99.7 9E-17 2E-21 102.0 6.6 71 8-93 1-71 (71)
18 KOG0005 Ubiquitin-like protein 99.7 3.4E-17 7.4E-22 101.9 3.9 70 8-91 1-70 (70)
19 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.2E-16 2.7E-21 103.8 6.7 75 7-95 2-78 (80)
20 cd01809 Scythe_N Ubiquitin-lik 99.7 1.6E-16 3.5E-21 99.9 6.9 72 8-93 1-72 (72)
21 PF00240 ubiquitin: Ubiquitin 99.7 2.6E-16 5.5E-21 98.6 7.1 68 13-94 1-68 (69)
22 cd01796 DDI1_N DNA damage indu 99.7 2.5E-16 5.5E-21 100.4 6.2 63 10-80 1-65 (71)
23 KOG0003 Ubiquitin/60s ribosoma 99.6 2.5E-17 5.4E-22 113.2 0.6 75 9-97 2-76 (128)
24 cd01800 SF3a120_C Ubiquitin-li 99.6 7E-16 1.5E-20 99.4 5.8 69 15-97 5-73 (76)
25 KOG0004 Ubiquitin/40S ribosoma 99.6 7.9E-16 1.7E-20 111.3 3.8 76 8-97 1-76 (156)
26 cd01812 BAG1_N Ubiquitin-like 99.6 6.1E-15 1.3E-19 92.7 6.6 64 8-80 1-64 (71)
27 cd01763 Sumo Small ubiquitin-r 99.6 1.8E-14 4E-19 95.1 8.6 79 4-96 8-86 (87)
28 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 4.7E-15 1E-19 96.2 4.8 58 26-93 18-75 (75)
29 TIGR00601 rad23 UV excision re 99.5 4.2E-14 9.2E-19 115.2 7.7 68 8-80 1-68 (378)
30 cd01813 UBP_N UBP ubiquitin pr 99.5 7E-14 1.5E-18 90.0 6.4 62 10-80 3-67 (74)
31 KOG0010 Ubiquitin-like protein 99.5 4.6E-14 1E-18 117.2 6.3 76 7-97 15-90 (493)
32 smart00213 UBQ Ubiquitin homol 99.5 1.7E-13 3.6E-18 83.6 5.7 63 8-79 1-63 (64)
33 cd01799 Hoil1_N Ubiquitin-like 99.4 6E-13 1.3E-17 86.0 6.5 63 9-80 4-68 (75)
34 KOG0011 Nucleotide excision re 99.4 5.2E-13 1.1E-17 106.5 6.3 67 8-80 1-67 (340)
35 cd01769 UBL Ubiquitin-like dom 99.3 1.8E-11 3.8E-16 75.4 6.2 60 12-79 2-61 (69)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 1.4E-10 3E-15 73.1 5.5 70 8-91 1-71 (72)
37 KOG4248 Ubiquitin-like protein 99.0 3E-10 6.5E-15 101.0 6.2 75 8-97 3-77 (1143)
38 cd01795 USP48_C USP ubiquitin- 98.9 1.4E-09 3E-14 74.1 5.1 62 23-97 19-81 (107)
39 cd01789 Alp11_N Ubiquitin-like 98.9 4E-09 8.6E-14 69.3 6.8 62 17-92 12-80 (84)
40 KOG0001 Ubiquitin and ubiquiti 98.8 2.3E-08 5E-13 60.7 7.7 72 10-95 2-73 (75)
41 PLN02560 enoyl-CoA reductase 98.8 1.9E-08 4.1E-13 80.3 6.9 79 9-101 2-89 (308)
42 PF10302 DUF2407: DUF2407 ubiq 98.8 1.8E-08 3.8E-13 68.3 5.7 59 10-74 3-64 (97)
43 cd01788 ElonginB Ubiquitin-lik 98.7 6.1E-08 1.3E-12 67.4 5.8 77 8-93 3-80 (119)
44 cd01801 Tsc13_N Ubiquitin-like 98.5 2.7E-07 5.8E-12 59.3 5.7 48 26-79 20-69 (77)
45 PF14560 Ubiquitin_2: Ubiquiti 98.5 5E-07 1.1E-11 59.2 5.9 70 8-91 2-81 (87)
46 cd00196 UBQ Ubiquitin-like pro 98.3 6.8E-06 1.5E-10 46.9 6.8 60 13-80 3-62 (69)
47 KOG0006 E3 ubiquitin-protein l 98.1 3.8E-06 8.1E-11 67.8 4.7 63 8-78 3-66 (446)
48 PF00789 UBX: UBX domain; Int 98.0 7.3E-05 1.6E-09 48.0 8.4 71 2-79 1-75 (82)
49 cd01811 OASL_repeat1 2'-5' oli 97.8 5.4E-05 1.2E-09 49.2 5.5 61 8-77 1-66 (80)
50 cd01770 p47_UBX p47-like ubiqu 97.8 0.00021 4.5E-09 46.4 8.2 67 5-78 2-71 (79)
51 PF11543 UN_NPL4: Nuclear pore 97.8 7.4E-05 1.6E-09 48.8 5.8 65 7-80 4-73 (80)
52 KOG4495 RNA polymerase II tran 97.6 9.4E-05 2E-09 50.3 4.2 74 8-90 3-79 (110)
53 PF08817 YukD: WXG100 protein 97.3 0.00085 1.8E-08 43.1 5.3 72 7-80 2-74 (79)
54 cd01774 Faf1_like2_UBX Faf1 ik 97.3 0.0025 5.5E-08 41.9 7.6 64 6-78 3-76 (85)
55 cd01767 UBX UBX (ubiquitin reg 97.1 0.0054 1.2E-07 39.0 7.7 62 7-77 2-68 (77)
56 smart00166 UBX Domain present 97.1 0.0049 1.1E-07 39.5 7.3 64 6-77 3-71 (80)
57 KOG1769 Ubiquitin-like protein 97.0 0.0064 1.4E-07 41.4 7.9 67 6-80 19-85 (99)
58 cd01772 SAKS1_UBX SAKS1-like U 97.0 0.0073 1.6E-07 38.9 7.7 64 6-78 3-71 (79)
59 KOG4583 Membrane-associated ER 96.9 0.00039 8.4E-09 56.5 1.0 63 7-75 9-73 (391)
60 KOG1872 Ubiquitin-specific pro 96.7 0.0055 1.2E-07 51.5 6.3 56 16-79 11-67 (473)
61 KOG0013 Uncharacterized conser 96.6 0.0028 6.2E-08 48.5 4.1 65 7-79 145-210 (231)
62 PF13019 Telomere_Sde2: Telome 96.5 0.023 4.9E-07 41.9 8.3 83 8-99 1-90 (162)
63 COG5417 Uncharacterized small 96.0 0.054 1.2E-06 35.3 6.9 70 8-80 7-76 (81)
64 cd01771 Faf1_UBX Faf1 UBX doma 96.0 0.084 1.8E-06 34.2 8.0 67 4-79 1-72 (80)
65 cd01773 Faf1_like1_UBX Faf1 ik 95.1 0.15 3.2E-06 33.5 6.7 66 5-79 3-73 (82)
66 COG5227 SMT3 Ubiquitin-like pr 95.0 0.13 2.7E-06 34.8 6.1 65 8-80 25-89 (103)
67 PF15044 CLU_N: Mitochondrial 94.2 0.13 2.7E-06 33.1 4.6 60 25-96 1-61 (76)
68 KOG3493 Ubiquitin-like protein 93.3 0.021 4.6E-07 36.2 -0.2 62 10-79 4-65 (73)
69 KOG2086 Protein tyrosine phosp 92.9 0.29 6.3E-06 40.4 5.8 69 3-78 301-372 (380)
70 TIGR01682 moaD molybdopterin c 91.5 0.83 1.8E-05 28.9 5.6 56 16-80 13-69 (80)
71 PLN02799 Molybdopterin synthas 90.9 0.75 1.6E-05 29.2 4.9 63 9-80 3-71 (82)
72 PF09379 FERM_N: FERM N-termin 90.6 1.8 3.8E-05 26.9 6.4 71 12-93 1-77 (80)
73 KOG1639 Steroid reductase requ 89.6 0.86 1.9E-05 36.1 5.1 68 23-101 17-85 (297)
74 KOG3206 Alpha-tubulin folding 89.4 1.4 3E-05 34.0 6.0 56 23-91 17-79 (234)
75 PRK08364 sulfur carrier protei 89.4 2.6 5.6E-05 26.2 6.4 45 19-80 15-59 (70)
76 PRK06437 hypothetical protein; 88.3 2.5 5.4E-05 26.2 5.7 48 16-80 9-56 (67)
77 TIGR01687 moaD_arch MoaD famil 87.8 4.5 9.9E-05 25.8 7.0 60 16-80 13-77 (88)
78 cd00754 MoaD Ubiquitin domain 87.7 3.4 7.3E-05 25.6 6.2 56 17-80 14-69 (80)
79 PF11470 TUG-UBL1: GLUT4 regul 87.0 3.7 8.1E-05 25.6 5.9 58 14-79 3-60 (65)
80 PF02597 ThiS: ThiS family; I 86.3 2.2 4.8E-05 26.2 4.7 54 19-80 13-66 (77)
81 cd06409 PB1_MUG70 The MUG70 pr 83.3 4.6 9.9E-05 26.7 5.3 32 10-42 3-34 (86)
82 PF10790 DUF2604: Protein of U 83.1 6 0.00013 25.2 5.5 69 15-94 3-72 (76)
83 cd06406 PB1_P67 A PB1 domain i 82.7 3.6 7.8E-05 26.9 4.5 44 9-62 4-47 (80)
84 smart00295 B41 Band 4.1 homolo 82.6 3.1 6.6E-05 29.9 4.7 63 7-76 3-71 (207)
85 PF06234 TmoB: Toluene-4-monoo 81.8 12 0.00027 24.7 7.1 70 8-79 4-76 (85)
86 PF00564 PB1: PB1 domain; Int 80.9 6 0.00013 24.6 5.1 48 7-62 1-48 (84)
87 cd00565 ThiS ThiaminS ubiquiti 77.5 5.8 0.00013 24.0 4.1 46 23-80 9-54 (65)
88 PF08783 DWNN: DWNN domain; I 77.5 4 8.7E-05 26.2 3.4 32 10-41 1-33 (74)
89 PF14453 ThiS-like: ThiS-like 76.6 11 0.00023 23.1 5.0 41 16-72 6-46 (57)
90 smart00666 PB1 PB1 domain. Pho 73.1 12 0.00025 23.3 4.8 45 8-61 2-46 (81)
91 KOG0007 Splicing factor 3a, su 71.8 2.2 4.8E-05 34.5 1.4 49 15-71 290-339 (341)
92 PF08337 Plexin_cytopl: Plexin 70.4 25 0.00054 30.6 7.5 80 7-94 189-290 (539)
93 PF12754 Blt1: Cell-cycle cont 69.8 1.5 3.2E-05 35.5 0.0 46 28-75 103-158 (309)
94 PF00788 RA: Ras association ( 68.7 22 0.00047 22.2 5.4 46 8-59 3-52 (93)
95 PF14451 Ub-Mut7C: Mut7-C ubiq 67.7 31 0.00066 22.3 6.8 47 17-80 22-69 (81)
96 PF11069 DUF2870: Protein of u 66.1 6.8 0.00015 26.6 2.6 40 57-99 3-42 (98)
97 cd01787 GRB7_RA RA (RAS-associ 65.6 17 0.00037 24.0 4.4 63 7-74 2-68 (85)
98 cd01760 RBD Ubiquitin-like dom 65.4 17 0.00038 23.0 4.3 51 10-66 2-54 (72)
99 KOG1364 Predicted ubiquitin re 63.0 9.3 0.0002 31.5 3.3 64 8-78 278-346 (356)
100 TIGR02958 sec_mycoba_snm4 secr 61.4 46 0.00099 28.1 7.3 80 8-96 3-83 (452)
101 PRK11130 moaD molybdopterin sy 55.8 49 0.0011 20.8 5.9 56 16-80 14-70 (81)
102 cd05992 PB1 The PB1 domain is 55.2 26 0.00055 21.5 3.8 33 9-43 2-35 (81)
103 PF10209 DUF2340: Uncharacteri 55.0 30 0.00064 24.4 4.4 55 24-78 21-99 (122)
104 cd01768 RA RA (Ras-associating 54.6 51 0.0011 20.6 5.3 54 10-69 2-64 (87)
105 TIGR01683 thiS thiamine biosyn 53.6 43 0.00094 20.0 4.6 50 16-80 4-53 (64)
106 KOG4261 Talin [Cytoskeleton] 52.7 28 0.0006 31.9 4.8 63 7-75 3-71 (1003)
107 PF02505 MCR_D: Methyl-coenzym 52.4 24 0.00051 25.8 3.6 53 7-74 67-120 (153)
108 cd06411 PB1_p51 The PB1 domain 52.0 55 0.0012 21.3 5.0 35 19-61 8-42 (78)
109 PF02192 PI3K_p85B: PI3-kinase 52.0 13 0.00028 24.0 2.1 19 23-41 4-22 (78)
110 COG4055 McrD Methyl coenzyme M 51.8 35 0.00076 25.0 4.4 47 15-74 81-128 (165)
111 PRK05659 sulfur carrier protei 51.7 50 0.0011 19.7 5.8 37 16-66 6-42 (66)
112 smart00455 RBD Raf-like Ras-bi 49.0 63 0.0014 20.1 4.8 49 10-66 2-52 (70)
113 cd06407 PB1_NLP A PB1 domain i 48.2 31 0.00068 22.3 3.4 33 9-43 2-34 (82)
114 smart00144 PI3K_rbd PI3-kinase 47.0 86 0.0019 21.0 6.5 67 7-75 17-87 (108)
115 smart00143 PI3K_p85B PI3-kinas 46.5 20 0.00044 23.2 2.3 19 23-41 4-22 (78)
116 PF00894 Luteo_coat: Luteoviru 45.5 58 0.0012 23.4 4.6 55 8-63 46-117 (138)
117 COG5100 NPL4 Nuclear pore prot 45.4 1.1E+02 0.0023 26.3 6.9 66 8-80 1-72 (571)
118 PF04233 Phage_Mu_F: Phage Mu 44.4 12 0.00027 24.4 1.1 12 106-117 101-112 (112)
119 KOG2689 Predicted ubiquitin re 44.2 32 0.0007 27.6 3.5 35 6-41 209-243 (290)
120 TIGR03260 met_CoM_red_D methyl 43.7 39 0.00085 24.6 3.6 53 7-74 66-118 (150)
121 KOG0012 DNA damage inducible p 43.4 54 0.0012 27.3 4.8 64 9-80 4-69 (380)
122 PF11148 DUF2922: Protein of u 42.4 71 0.0015 19.6 4.3 31 7-38 2-35 (69)
123 PF06200 tify: tify domain; I 41.7 27 0.00058 19.4 2.0 13 53-65 5-17 (36)
124 KOG4250 TANK binding protein k 41.4 70 0.0015 28.9 5.5 45 14-66 321-365 (732)
125 PF14533 USP7_C2: Ubiquitin-sp 39.6 80 0.0017 23.7 5.0 47 23-74 38-90 (213)
126 PRK06488 sulfur carrier protei 38.6 87 0.0019 18.7 6.3 49 16-80 6-54 (65)
127 KOG3391 Transcriptional co-rep 36.7 34 0.00073 24.8 2.4 62 28-96 61-139 (151)
128 COG5222 Uncharacterized conser 36.6 89 0.0019 25.7 5.0 49 10-63 5-54 (427)
129 PF00794 PI3K_rbd: PI3-kinase 34.9 1E+02 0.0022 20.2 4.4 68 6-75 15-85 (106)
130 PF08154 NLE: NLE (NUC135) dom 34.4 1.1E+02 0.0024 18.6 5.7 55 8-67 2-59 (65)
131 PF02196 RBD: Raf-like Ras-bin 32.3 1.3E+02 0.0027 18.7 6.8 58 9-72 2-59 (71)
132 PF14191 YodL: YodL-like 31.9 1E+02 0.0023 20.9 4.1 34 27-60 48-81 (103)
133 cd01777 SNX27_RA Ubiquitin dom 31.7 92 0.002 20.7 3.7 34 7-41 1-34 (87)
134 KOG2507 Ubiquitin regulatory p 31.1 1.3E+02 0.0027 25.9 5.2 68 5-78 312-382 (506)
135 cd06396 PB1_NBR1 The PB1 domai 31.0 1.3E+02 0.0028 19.6 4.3 31 9-41 2-34 (81)
136 cd06408 PB1_NoxR The PB1 domai 30.8 1.6E+02 0.0035 19.4 5.4 33 8-42 3-35 (86)
137 PRK07440 hypothetical protein; 28.4 1.5E+02 0.0032 18.3 6.2 50 16-80 10-59 (70)
138 PF11816 DUF3337: Domain of un 28.3 1E+02 0.0022 24.8 4.1 53 23-75 252-312 (331)
139 PF14454 Prok_Ub: Prokaryotic 26.8 1.4E+02 0.0031 18.6 3.8 31 11-44 9-39 (65)
140 KOG3309 Ferredoxin [Energy pro 26.5 1E+02 0.0022 22.7 3.4 31 6-37 42-72 (159)
141 PRK11840 bifunctional sulfur c 26.5 3.6E+02 0.0077 22.1 6.9 37 16-66 6-42 (326)
142 TIGR02008 fdx_plant ferredoxin 25.6 1.7E+02 0.0036 19.0 4.2 27 8-35 3-29 (97)
143 PRK08053 sulfur carrier protei 23.9 1.7E+02 0.0038 17.5 4.8 51 15-80 5-55 (66)
144 PTZ00490 Ferredoxin superfamil 23.5 1.7E+02 0.0037 20.9 4.2 29 5-34 33-61 (143)
145 PRK01777 hypothetical protein; 23.2 2.3E+02 0.005 18.7 7.0 50 22-80 20-69 (95)
146 PF03633 Glyco_hydro_65C: Glyc 22.7 44 0.00096 19.3 0.9 20 42-66 3-22 (54)
147 KOG2561 Adaptor protein NUB1, 21.8 53 0.0012 28.4 1.4 69 3-78 33-102 (568)
148 PRK05863 sulfur carrier protei 21.6 2E+02 0.0042 17.3 5.1 50 15-80 5-54 (65)
149 PF02824 TGS: TGS domain; Int 21.3 1.9E+02 0.0041 17.1 3.5 29 10-41 1-29 (60)
150 PF14941 OAF: Transcriptional 21.0 2.8E+02 0.0061 21.7 5.1 57 3-66 23-79 (240)
151 PF06487 SAP18: Sin3 associate 20.4 1.4E+02 0.0031 20.7 3.2 54 27-80 45-114 (120)
152 PF06123 CreD: Inner membrane 20.2 1.2E+02 0.0025 25.7 3.1 54 7-78 198-251 (430)
No 1
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.97 E-value=1.3e-31 Score=185.33 Aligned_cols=110 Identities=48% Similarity=0.925 Sum_probs=84.2
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033531 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.|+|+|++.+|.++.++.+++++||++||+.|+++||+||+..|.+++.+||||+||+|+|+.||++|+++.++.++.+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 47999999999996667999999999999999999999999988889999999999999999999999999988766667
Q ss_pred EEEEEEeCCCCchhhh-hhccCCCCCCeeEe
Q 033531 86 TTMHVVVQPPSTEKEK-KAASQPKQNKCVCV 115 (117)
Q Consensus 86 ~tmhlv~~~~~~~~~~-~~~~~~~~~~c~c~ 115 (117)
++|||+++++.++++. +..+..++.+|+|+
T Consensus 81 ~vmHlvvrp~~~~~~~~~~~~~~k~~~C~C~ 111 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKKRKKPKQSGCSCC 111 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS-----STT-----
T ss_pred EEEEEEecCCCCCccccccccCcCCCCCCCC
Confidence 9999999999988876 45556789999995
No 2
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.97 E-value=8.5e-32 Score=185.75 Aligned_cols=111 Identities=68% Similarity=1.113 Sum_probs=102.8
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033531 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
+++.+.||||+.+|.++.|+.+++++||++||++|+++||.+++++|.++++|||||+||+|+|+.||++|+++.|+.++
T Consensus 1 ~~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~ 80 (113)
T cd01814 1 VEEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAG 80 (113)
T ss_pred CCccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCC
Confidence 36789999999999999999999999999999999999999999998888999999999999999999999999998888
Q ss_pred CeEEEEEEeCCCCchhhh--hhccCCCCCCeeE
Q 033531 84 GVTTMHVVVQPPSTEKEK--KAASQPKQNKCVC 114 (117)
Q Consensus 84 ~~~tmhlv~~~~~~~~~~--~~~~~~~~~~c~c 114 (117)
..+||||+++++.+++.+ .++...+..+|+|
T Consensus 81 ~~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c 113 (113)
T cd01814 81 GVITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113 (113)
T ss_pred CceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence 889999999999998876 3566678999998
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.79 E-value=3.6e-19 Score=113.90 Aligned_cols=73 Identities=26% Similarity=0.399 Sum_probs=65.6
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
+.|+||+.+|+++. +++++++||++||++|+ +..++| +++|||+|+||.|+|+.+|++|+|+.+ .+
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~-----~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~ 66 (74)
T cd01807 1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVS-----EHLNVP--EEQQRLLFKGKALADDKRLSDYSIGPN------AK 66 (74)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHH-----HHHCCC--HHHeEEEECCEECCCCCCHHHCCCCCC------CE
Confidence 47899999999998 99999999999999995 446787 799999999999999999999999977 37
Q ss_pred EEEEeCC
Q 033531 88 MHVVVQP 94 (117)
Q Consensus 88 mhlv~~~ 94 (117)
+||++++
T Consensus 67 l~l~~~~ 73 (74)
T cd01807 67 LNLVVRP 73 (74)
T ss_pred EEEEEcC
Confidence 8888885
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.78 E-value=8.3e-19 Score=112.33 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=63.3
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+||. ++++. +++++++||++||++|+ +.+++| +++|||||+||.|+|+.||++|+++++ .|
T Consensus 1 mqi~vk~--~~~~~-l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~------~t 64 (74)
T cd01793 1 MQLFVRA--QNTHT-LEVTGQETVSDIKAHVA-----GLEGID--VEDQVLLLAGVPLEDDATLGQCGVEEL------CT 64 (74)
T ss_pred CEEEEEC--CCEEE-EEECCcCcHHHHHHHHH-----hhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCC------CE
Confidence 4677776 46777 99999999999999994 456787 799999999999999999999999976 48
Q ss_pred EEEEeCCCC
Q 033531 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+|+++++++
T Consensus 65 l~l~~~l~G 73 (74)
T cd01793 65 LEVAGRLLG 73 (74)
T ss_pred EEEEEecCC
Confidence 899999876
No 5
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.77 E-value=8.5e-19 Score=111.93 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=61.8
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmh 89 (117)
+|+|+.+|+++. +++++++||++||++|+ +.+++| +++|||||+||.|+|+.+|++|++..+ .++|
T Consensus 1 ~~vk~~~G~~~~-l~v~~~~TV~~lK~~I~-----~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~------~tv~ 66 (70)
T cd01794 1 LKVRLSTGKDVK-LSVSSKDTVGQLKKQLQ-----AAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKD------YVVQ 66 (70)
T ss_pred CeEEcCCCCEEE-EEECCcChHHHHHHHHH-----HHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCC------CEEE
Confidence 578999999999 99999999999999995 446787 699999999999999999999999955 4788
Q ss_pred EEe
Q 033531 90 VVV 92 (117)
Q Consensus 90 lv~ 92 (117)
|.+
T Consensus 67 ~~~ 69 (70)
T cd01794 67 VIV 69 (70)
T ss_pred EEe
Confidence 876
No 6
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.77 E-value=1.3e-18 Score=113.89 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=61.0
Q ss_pred eEEEEEeCCCceee-eeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccC--CCCCCCCCC
Q 033531 8 LEIKFRLTDGSDIG-PKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECR--SPLCDIPGG 84 (117)
Q Consensus 8 ~~i~~~~~~G~~~~-~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~--i~~g~~~~~ 84 (117)
+.|.||..+|+... .+++++++||++||++|++.+|. .|. +++|||||+||+|+|++||++|. +..+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~----~~~-~~~QrLIy~GKiLkD~~tL~~~~~~~~~~----- 71 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS----KPL-EQDQRLIYSGKLLPDHLKLRDVLRKQDEY----- 71 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC----CCC-hhHeEEEEcCeeccchhhHHHHhhcccCC-----
Confidence 68999999999844 15558999999999999877542 221 69999999999999999999996 7654
Q ss_pred eEEEEEEe
Q 033531 85 VTTMHVVV 92 (117)
Q Consensus 85 ~~tmhlv~ 92 (117)
.|||||.
T Consensus 72 -~tiHLV~ 78 (79)
T cd01790 72 -HMVHLVC 78 (79)
T ss_pred -ceEEEEe
Confidence 5899985
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.76 E-value=2.2e-18 Score=117.61 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=69.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033531 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.++|+||+.+|+++. +++++++||++||++|+ +.+++| +++|||+|+||+|+|+.+|++|+|.++
T Consensus 26 ~~M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~-----~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~------ 91 (103)
T cd01802 26 DTMELFIETLTGTCFE-LRVSPFETVISVKAKIQ-----RLEGIP--VAQQHLIWNNMELEDEYCLNDYNISEG------ 91 (103)
T ss_pred CCEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHH-----HHhCCC--hHHEEEEECCEECCCCCcHHHcCCCCC------
Confidence 4689999999999998 99999999999999995 446787 699999999999999999999999977
Q ss_pred EEEEEEeCCCC
Q 033531 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
.++|++++.++
T Consensus 92 stL~l~~~l~G 102 (103)
T cd01802 92 CTLKLVLAMRG 102 (103)
T ss_pred CEEEEEEecCC
Confidence 37899888765
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.76 E-value=2.4e-18 Score=111.93 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=65.3
Q ss_pred eEEEEEeCCCce-eeeee-cCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033531 8 LEIKFRLTDGSD-IGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 8 ~~i~~~~~~G~~-~~~l~-~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
++|+||+.+|++ +. ++ +++++||.+||++|. +.+++| +++|||||+||+|+|+.+|++|+|..+
T Consensus 1 M~I~vk~~~G~~~~~-l~~v~~~~TV~~lK~~i~-----~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~------ 66 (78)
T cd01797 1 MWIQVRTMDGKETRT-VDSLSRLTKVEELREKIQ-----ELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLN------ 66 (78)
T ss_pred CEEEEEcCCCCEEEE-eeccCCcCcHHHHHHHHH-----HHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCC------
Confidence 579999999997 56 75 899999999999995 456787 799999999999999999999999977
Q ss_pred EEEEEEeCCCC
Q 033531 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
.++|+++++.+
T Consensus 67 ~~i~l~~~~~~ 77 (78)
T cd01797 67 DIIQLLVRQDP 77 (78)
T ss_pred CEEEEEEecCC
Confidence 37888888754
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.74 E-value=4.7e-18 Score=108.82 Aligned_cols=73 Identities=23% Similarity=0.221 Sum_probs=64.8
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmh 89 (117)
|+||+..|+++. +++++++||++||++|+ +..++| +++|||+|+||.|+|+.+|++|+|++++ ++|
T Consensus 1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~-----~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~------tl~ 66 (74)
T cd01810 1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVS-----QRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGC------TVF 66 (74)
T ss_pred CEEECCCCCEEE-EEECCcChHHHHHHHHH-----HHhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCC------EEE
Confidence 578999999998 99999999999999995 446787 7999999999999999999999999773 788
Q ss_pred EEeCCCC
Q 033531 90 VVVQPPS 96 (117)
Q Consensus 90 lv~~~~~ 96 (117)
++++..+
T Consensus 67 l~~~l~g 73 (74)
T cd01810 67 MNLRLRG 73 (74)
T ss_pred EEEEccC
Confidence 8887654
No 10
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=5.9e-18 Score=108.17 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=66.5
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|.||+.+|+++. +++++++||++||++|+. ..++| +++|||+|+|+.|+|+.+|++|++..+ .+
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~-----~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~------~~ 66 (76)
T PTZ00044 1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQE-----KEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPG------ST 66 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHeEEEECCEEccCCCcHHHcCCCCC------CE
Confidence 47899999999998 999999999999999954 46787 799999999999999999999999976 37
Q ss_pred EEEEeCCCC
Q 033531 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+|++++..+
T Consensus 67 i~l~~~~~g 75 (76)
T PTZ00044 67 IHMVLQLRG 75 (76)
T ss_pred EEEEEEccC
Confidence 888887654
No 11
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.74 E-value=8e-18 Score=108.40 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=62.2
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
+.|+|+...|+.+. ++++|++||++||++|++. .++| +++|||||+|++|+|+.+|++|++.+| .+
T Consensus 2 ~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~------st 67 (73)
T cd01791 2 IEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQ-----TGTR--PEKIVLKKWYTIFKDHISLGDYEIHDG------MN 67 (73)
T ss_pred EEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCC------CE
Confidence 67899999999998 9999999999999999654 3566 799999999999999999999999977 36
Q ss_pred EEEE
Q 033531 88 MHVV 91 (117)
Q Consensus 88 mhlv 91 (117)
+||.
T Consensus 68 v~l~ 71 (73)
T cd01791 68 LELY 71 (73)
T ss_pred EEEE
Confidence 7765
No 12
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.74 E-value=5.6e-18 Score=107.22 Aligned_cols=70 Identities=27% Similarity=0.410 Sum_probs=62.5
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmh 89 (117)
|.||+.+|+++. +++++++||++||++|+ +..++| +++|||+|+|+.|+|+.+|++|++..+ .++|
T Consensus 1 i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~-----~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~------stl~ 66 (70)
T cd01798 1 VYVRTNTGHTFP-VEVDPDTDIKQLKEVVA-----KRQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQ------SILH 66 (70)
T ss_pred CEEEcCCCCEEE-EEECCCChHHHHHHHHH-----HHHCCC--HHHeEEEECCeECCCCCcHHHcCCCCC------CEEE
Confidence 578999999998 99999999999999995 446777 699999999999999999999999976 4889
Q ss_pred EEeC
Q 033531 90 VVVQ 93 (117)
Q Consensus 90 lv~~ 93 (117)
|+.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 8875
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.71 E-value=4.8e-17 Score=103.28 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=66.0
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|+..+|+++. ++++++.||.+||++|++ ..++| ++.|||+|+|+.|+|+.+|++|++.+|+ +
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~-----~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~------~ 66 (76)
T cd01806 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEE-----KEGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGS------V 66 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhH-----hhCCC--hhhEEEEECCeEccCCCCHHHcCCCCCC------E
Confidence 47899999999998 999999999999999954 35677 7999999999999999999999999873 7
Q ss_pred EEEEeCCCC
Q 033531 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+|++++..+
T Consensus 67 i~l~~~~~g 75 (76)
T cd01806 67 LHLVLALRG 75 (76)
T ss_pred EEEEEEccC
Confidence 888887654
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.70 E-value=8.2e-17 Score=104.43 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=63.7
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
+.|+|+...|++++ +++++++||++||++|+++ .++| +++|||+|+|+.|+|+ +|++|++.+|+ +
T Consensus 2 m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~------~ 66 (78)
T cd01804 2 MNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQR-----LKVP--KERLALLHRETRLSSG-KLQDLGLGDGS------K 66 (78)
T ss_pred eEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHH-----hCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCC------E
Confidence 68999999999998 9999999999999999654 3566 7999999999999998 99999999773 7
Q ss_pred EEEEeCCC
Q 033531 88 MHVVVQPP 95 (117)
Q Consensus 88 mhlv~~~~ 95 (117)
+||+....
T Consensus 67 i~l~~~~~ 74 (78)
T cd01804 67 LTLVPTVE 74 (78)
T ss_pred EEEEeecc
Confidence 78777654
No 15
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.69 E-value=8.7e-17 Score=102.08 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=66.2
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|.|+..+|+.+. +++++++||++||++|+. ..++| +++|||+|+|+.|+|+.+|++|++.++ .+
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (76)
T cd01803 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (76)
T ss_pred CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHH-----HhCCC--HHHeEEEECCEECCCCCcHHHcCCCCC------CE
Confidence 46889999999998 999999999999999954 45677 699999999999999999999999976 37
Q ss_pred EEEEeCCCC
Q 033531 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+|++++..+
T Consensus 67 i~l~~~~~g 75 (76)
T cd01803 67 LHLVLRLRG 75 (76)
T ss_pred EEEEEEccC
Confidence 888888654
No 16
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.69 E-value=1.3e-16 Score=102.00 Aligned_cols=65 Identities=29% Similarity=0.410 Sum_probs=58.4
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCC--CCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENG--PRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~--p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
++|+|++.+|+.+. +++++++||.+||++|++. .++ | +++|||+|+|+.|+|+.+|++|++++|+
T Consensus 1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~-----~~i~~~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~ 67 (77)
T cd01805 1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEE-----KGCDYP--PEQQKLIYSGKILKDDTTLEEYKIDEKD 67 (77)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHh-----hCCCCC--hhHeEEEECCEEccCCCCHHHcCCCCCC
Confidence 47899999999998 9999999999999999654 455 5 7999999999999999999999999774
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.68 E-value=9e-17 Score=102.00 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=60.6
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
+.|.|++.+|+. . ++++++.||.+||++|++. .++| +++|||+|+||.|+|+.+|++|++.+| .+
T Consensus 1 ~~i~vk~~~g~~-~-l~v~~~~TV~~lK~~I~~~-----~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~------st 65 (71)
T cd01808 1 IKVTVKTPKDKE-E-IEIAEDASVKDFKEAVSKK-----FKAN--QEQLVLIFAGKILKDTDTLTQHNIKDG------LT 65 (71)
T ss_pred CEEEEEcCCCCE-E-EEECCCChHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence 357888899974 5 8999999999999999654 3566 799999999999999999999999976 37
Q ss_pred EEEEeC
Q 033531 88 MHVVVQ 93 (117)
Q Consensus 88 mhlv~~ 93 (117)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 788764
No 18
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.4e-17 Score=101.86 Aligned_cols=70 Identities=29% Similarity=0.414 Sum_probs=63.8
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
+.|++++++|+.++ ++++|+++|..+|++| ++.+|+| |.+|||||+||++.|+.|-++|++.-| ++
T Consensus 1 m~iKvktLt~KeIe-idIep~DkverIKErv-----EEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~G------SV 66 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERV-----EEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGG------SV 66 (70)
T ss_pred CeeeEeeeccceEE-EeeCcchHHHHHHHHh-----hhhcCCC--chhhhhhhccccccccccHHHhhhccc------ee
Confidence 36899999999999 9999999999999999 6778998 799999999999999999999999866 57
Q ss_pred EEEE
Q 033531 88 MHVV 91 (117)
Q Consensus 88 mhlv 91 (117)
+|++
T Consensus 67 lHlv 70 (70)
T KOG0005|consen 67 LHLV 70 (70)
T ss_pred EeeC
Confidence 7874
No 19
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.68 E-value=1.2e-16 Score=103.80 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=65.5
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeE--EecCeecCCCCcccccCCCCCCCCCC
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL--ISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.|+|+...|+++. +++++++||++||++|++. .++| +++||| +|.|++|+|+.+|++|++.+|.
T Consensus 2 ~~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~-----~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs---- 69 (80)
T cd01792 2 GWDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQK-----IGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGS---- 69 (80)
T ss_pred ceEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCC----
Confidence 378999999999998 9999999999999999644 4566 799999 9999999999999999999773
Q ss_pred eEEEEEEeCCC
Q 033531 85 VTTMHVVVQPP 95 (117)
Q Consensus 85 ~~tmhlv~~~~ 95 (117)
++||+++..
T Consensus 70 --~l~l~~~~~ 78 (80)
T cd01792 70 --TVLLVVQNC 78 (80)
T ss_pred --EEEEEEEcc
Confidence 678877754
No 20
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=1.6e-16 Score=99.86 Aligned_cols=72 Identities=28% Similarity=0.419 Sum_probs=63.7
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
+.|+|+..+|+.+. +++++++||.+||++|++. .++| ++.|||+|+|+.|+|+.+|++|++.+| .+
T Consensus 1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (72)
T cd01809 1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEE-----VGIP--VEQQRLIYSGRVLKDDETLSEYKVEDG------HT 66 (72)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCEECCCcCcHHHCCCCCC------CE
Confidence 57899999999998 9999999999999999654 4676 699999999999999999999999977 37
Q ss_pred EEEEeC
Q 033531 88 MHVVVQ 93 (117)
Q Consensus 88 mhlv~~ 93 (117)
+|++++
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 888764
No 21
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.67 E-value=2.6e-16 Score=98.62 Aligned_cols=68 Identities=25% Similarity=0.423 Sum_probs=60.1
Q ss_pred EeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEEEEe
Q 033531 13 RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVV 92 (117)
Q Consensus 13 ~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv~ 92 (117)
|+.+|+++. +++++++||.+||++|+.. .++| ++.|||+|+|+.|+|+.+|++|+|.+| .+||+++
T Consensus 1 k~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~------~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFT-LEVDPDDTVADLKQKIAEE-----TGIP--PEQQRLIYNGKELDDDKTLSDYGIKDG------STIHLVI 66 (69)
T ss_dssp EETTSEEEE-EEEETTSBHHHHHHHHHHH-----HTST--GGGEEEEETTEEESTTSBTGGGTTSTT------EEEEEEE
T ss_pred CCCCCcEEE-EEECCCCCHHHhhhhcccc-----cccc--cccceeeeeeecccCcCcHHHcCCCCC------CEEEEEE
Confidence 578999998 9999999999999999755 3566 799999999999999999999999977 4788887
Q ss_pred CC
Q 033531 93 QP 94 (117)
Q Consensus 93 ~~ 94 (117)
++
T Consensus 67 k~ 68 (69)
T PF00240_consen 67 KP 68 (69)
T ss_dssp SS
T ss_pred ec
Confidence 75
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.66 E-value=2.5e-16 Score=100.39 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=55.9
Q ss_pred EEEEeC-CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCC-CcccccCCCCCC
Q 033531 10 IKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCD 80 (117)
Q Consensus 10 i~~~~~-~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~ 80 (117)
|+|++. +|+++. +++++++||++||++|+ +.+++| +++|||||+||.|+|+ .+|++|++.+|+
T Consensus 1 l~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~-----~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~ 65 (71)
T cd01796 1 ITVYTARSETTFS-LDVDPDLELENFKALCE-----AESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGD 65 (71)
T ss_pred CEEEECCCCCEEE-EEECCcCCHHHHHHHHH-----HHhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCC
Confidence 568888 899998 99999999999999995 456787 6999999999999987 689999999874
No 23
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.5e-17 Score=113.22 Aligned_cols=75 Identities=27% Similarity=0.400 Sum_probs=68.9
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEE
Q 033531 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM 88 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tm 88 (117)
.+.+++..|+++. ++++|++||..||.+| ++.+|+| +++|||||+||+|+|+.||++|++... .|+
T Consensus 2 ~~~~~~~~GKT~~-le~EpS~ti~~vKA~i-----~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~------~Tl 67 (128)
T KOG0003|consen 2 QIFVKTLTGKTIT-LEVEPSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKE------STL 67 (128)
T ss_pred cEEEEEeeCceEE-EEecccchHHHHHHHh-----ccccCCC--HHHHHHHhcccccccCCcccccCccch------hhh
Confidence 4678888999999 9999999999999999 7889998 799999999999999999999999854 589
Q ss_pred EEEeCCCCc
Q 033531 89 HVVVQPPST 97 (117)
Q Consensus 89 hlv~~~~~~ 97 (117)
|++++..+.
T Consensus 68 ~~~~rL~GG 76 (128)
T KOG0003|consen 68 HLVLRLRGG 76 (128)
T ss_pred hhhHHHhcC
Confidence 999998885
No 24
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.62 E-value=7e-16 Score=99.35 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=60.4
Q ss_pred CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEEEEeCC
Q 033531 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQP 94 (117)
Q Consensus 15 ~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv~~~ 94 (117)
.+|+++. +++++++||++||++|.. ..++| +++|||+|.|+.|+|+.+|++|++.+++ ++||+++.
T Consensus 5 l~g~~~~-l~v~~~~TV~~lK~~i~~-----~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLN-FTLQLSDPVSVLKVKIHE-----ETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKE 70 (76)
T ss_pred cCCeEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEec
Confidence 3788888 999999999999999953 46787 7999999999999999999999999774 77888887
Q ss_pred CCc
Q 033531 95 PST 97 (117)
Q Consensus 95 ~~~ 97 (117)
++.
T Consensus 71 ~gg 73 (76)
T cd01800 71 RGG 73 (76)
T ss_pred CCC
Confidence 764
No 25
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=7.9e-16 Score=111.32 Aligned_cols=76 Identities=28% Similarity=0.410 Sum_probs=70.0
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
+.|++++..|+++. +++++++||..+|.+| ++.++|| +++|||||+|+.|+|..+|+||+|+.. .|
T Consensus 1 m~ifVk~l~~kti~-~eve~~~ti~~~Kaki-----q~~egIp--~dqqrlifag~qLedgrtlSDY~Iqke------st 66 (156)
T KOG0004|consen 1 MQIFVKTLTGKTIT-LEVEANDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (156)
T ss_pred Cccchhhcccccee-eeecccccHHHHHHhh-----hcccCCC--chhhhhhhhhcccccCCcccccccccc------ce
Confidence 35788999999999 9999999999999999 7889999 799999999999999999999999854 59
Q ss_pred EEEEeCCCCc
Q 033531 88 MHVVVQPPST 97 (117)
Q Consensus 88 mhlv~~~~~~ 97 (117)
+||+++..+.
T Consensus 67 l~l~l~l~Gg 76 (156)
T KOG0004|consen 67 LHLVLRLRGG 76 (156)
T ss_pred EEEEEEecCC
Confidence 9999998885
No 26
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.58 E-value=6.1e-15 Score=92.68 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=56.6
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+.|+|++. |+.++ +++++++||++||++|+ +..++| +++|||+|.|+.|+|+.+|++|++.+|+
T Consensus 1 i~i~vk~~-g~~~~-i~v~~~~tv~~lK~~i~-----~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~ 64 (71)
T cd01812 1 IRVRVKHG-GESHD-LSISSQATFGDLKKMLA-----PVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGS 64 (71)
T ss_pred CEEEEEEC-CEEEE-EEECCCCcHHHHHHHHH-----HhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCC
Confidence 46788886 88887 99999999999999995 446777 7999999999999999999999999774
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.57 E-value=1.8e-14 Score=95.12 Aligned_cols=79 Identities=15% Similarity=0.311 Sum_probs=70.5
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033531 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
....|.|+++..+|+.+. +++.+++|+..||++++ +..++| +++|||+|.|+.|+|+.|+++|++.+++
T Consensus 8 ~~~~i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~-----~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d--- 76 (87)
T cd01763 8 ISEHINLKVKGQDGNEVF-FKIKRSTPLKKLMEAYC-----QRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGD--- 76 (87)
T ss_pred CCCeEEEEEECCCCCEEE-EEEcCCCHHHHHHHHHH-----HHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCC---
Confidence 456899999999999999 99999999999999995 446777 6999999999999999999999999885
Q ss_pred CeEEEEEEeCCCC
Q 033531 84 GVTTMHVVVQPPS 96 (117)
Q Consensus 84 ~~~tmhlv~~~~~ 96 (117)
++|++++..+
T Consensus 77 ---~I~v~l~l~G 86 (87)
T cd01763 77 ---EIEVMLEQTG 86 (87)
T ss_pred ---EEEEEEeccc
Confidence 7888887665
No 28
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.56 E-value=4.7e-15 Score=96.18 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=47.4
Q ss_pred CCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEEEEeC
Q 033531 26 PAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQ 93 (117)
Q Consensus 26 ~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv~~ 93 (117)
+.++||.+||++|+++++ +++|. +++|||||+||+|+|+.||++|+|.+| .++||+.+
T Consensus 18 ~~~~TV~~LK~kI~~~~~---egi~~-~dqQrLIy~GKiL~D~~TL~dygI~~g------stlhLv~~ 75 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLP---DSLPD-PELIDLIHCGRKLKDDQTLDFYGIQSG------STIHILRK 75 (75)
T ss_pred CccCcHHHHHHHHHHhhc---cCCCC-hHHeEEEeCCcCCCCCCcHHHcCCCCC------CEEEEEeC
Confidence 467999999999975532 34432 689999999999999999999999987 37888753
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=4.2e-14 Score=115.23 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=58.9
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+.|+||+..|+++. +++++++||.+||++|.... +...+| +++|||||+||+|+|+.+|++|+|.+++
T Consensus 1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~--g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~ 68 (378)
T TIGR00601 1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQ--GKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD 68 (378)
T ss_pred CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhh--CCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence 57899999999998 99999999999999997541 111266 6999999999999999999999999775
No 30
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.50 E-value=7e-14 Score=90.04 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=53.4
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe---cCeecCCCCcccccCCCCCC
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS---AGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~---~Gk~L~D~~tL~~~~i~~g~ 80 (117)
|.++. .|+++. +++++++||++||++|++ ..++| +++||||| .|+.|+|+.+|++|++.+|.
T Consensus 3 i~vk~-~g~~~~-v~v~~~~Tv~~lK~~i~~-----~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~ 67 (74)
T cd01813 3 VIVKW-GGQEYS-VTTLSEDTVLDLKQFIKT-----LTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNT 67 (74)
T ss_pred EEEEE-CCEEEE-EEECCCCCHHHHHHHHHH-----HHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCC
Confidence 44443 788888 999999999999999954 45687 79999997 99999999999999999774
No 31
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.48 E-value=4.6e-14 Score=117.15 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=64.9
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
.+.|+||+..+ ..+ +.+..+.||.+||+.|...+ ++| +++++|||+||+|+|++||..|||.+| .
T Consensus 15 ~irV~Vkt~~d-k~~-~~V~~~ssV~qlKE~I~~~f-----~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg------~ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYE-VNVASDSSVLQLKELIAQRF-----GAP--PDQLVLIYAGRILKDDDTLKQYGIQDG------H 79 (493)
T ss_pred eeEEEEecCCc-cee-EecccchHHHHHHHHHHHhc-----CCC--hhHeeeeecCccccChhhHHHcCCCCC------c
Confidence 47788887777 555 89999999999999997552 344 799999999999999999999999987 5
Q ss_pred EEEEEeCCCCc
Q 033531 87 TMHVVVQPPST 97 (117)
Q Consensus 87 tmhlv~~~~~~ 97 (117)
|+|||++....
T Consensus 80 TvHLVik~~~~ 90 (493)
T KOG0010|consen 80 TVHLVIKSQPR 90 (493)
T ss_pred EEEEEeccCCC
Confidence 99999997753
No 32
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.45 E-value=1.7e-13 Score=83.59 Aligned_cols=63 Identities=29% Similarity=0.428 Sum_probs=54.9
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 79 (117)
++|+||..+ .++. +++++++||++||++|+.. .++| +++|||+|+|+.|+|+.+|++|++.+|
T Consensus 1 ~~i~vk~~~-~~~~-~~v~~~~tv~~lk~~i~~~-----~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLD-GTIT-LEVKPSDTVSELKEKIAEL-----TGIP--VEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECC-ceEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 468888888 6777 9999999999999999654 4566 689999999999999999999999865
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.41 E-value=6e-13 Score=86.03 Aligned_cols=63 Identities=19% Similarity=0.109 Sum_probs=52.5
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecC-CCCcccccCCC-CCC
Q 033531 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE-NNRTLGECRSP-LCD 80 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~-D~~tL~~~~i~-~g~ 80 (117)
+|.=+...|.++. +++++++||++||++|+ ..+++| +++||| |.|+.|. |+.+|++|++. .|+
T Consensus 4 ~~~~~~~~~~t~~-l~v~~~~TV~~lK~kI~-----~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~ 68 (75)
T cd01799 4 SVEDAQSHTVTIW-LTVRPDMTVAQLKDKVF-----LDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGD 68 (75)
T ss_pred EEeccccCCCeEE-EEECCCCcHHHHHHHHH-----HHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCC
Confidence 3444556788888 99999999999999995 457888 799999 9999885 77999999997 443
No 34
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.40 E-value=5.2e-13 Score=106.53 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=59.4
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+.|+||++.|.+++ +++.|++||.+||.+|... .+.. .| .++|+|||+||+|.|+.|+.+|++.+++
T Consensus 1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~--~g~d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~ 67 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETE--KGPD-YP--AEQQKLIYSGKILKDETTVGEYKVKEKK 67 (340)
T ss_pred CeeEeeeccCceeE-eecCcchhHHHHHHHHHhc--cCCC-Cc--hhhheeeecceeccCCcchhhhccccCc
Confidence 46899999999999 9999999999999999865 2222 55 6999999999999999999999999875
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.26 E-value=1.8e-11 Score=75.43 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=52.7
Q ss_pred EEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCC
Q 033531 12 FRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 12 ~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 79 (117)
++..+|+.+. +.+++++||.+||++|+..+ ++| ++.|+|+|.|+.|+|+.+|++|++.++
T Consensus 2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~-----~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~ 61 (69)
T cd01769 2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKE-----GVP--PEQQRLIYAGKILKDDKTLSDYGIQDG 61 (69)
T ss_pred eEccCCCEEE-EEECCCChHHHHHHHHHHHH-----CcC--hHHEEEEECCcCCCCcCCHHHCCCCCC
Confidence 4556899998 99999999999999997653 465 689999999999999999999999876
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.12 E-value=1.4e-10 Score=73.13 Aligned_cols=70 Identities=30% Similarity=0.382 Sum_probs=59.6
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCC-CceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTV-KDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~-~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
++|+++..+|+.+. +.+.+++++..|+++++.+ .++| + +.++|+|.|+.|++++|++++++.+|+
T Consensus 1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~-----~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d------ 66 (72)
T PF11976_consen 1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEK-----KGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGD------ 66 (72)
T ss_dssp EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHH-----HTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTE------
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHh-----hCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCC------
Confidence 57899999999998 9999999999999999644 4666 5 899999999999999999999999885
Q ss_pred EEEEE
Q 033531 87 TMHVV 91 (117)
Q Consensus 87 tmhlv 91 (117)
+++|+
T Consensus 67 ~Idv~ 71 (72)
T PF11976_consen 67 TIDVI 71 (72)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66765
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3e-10 Score=101.02 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=66.3
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
..|++|+++.+..+ |.++..+||.++|++|+++ .+|+ .+.|||||+||+|.|++++.+|++ +|+ +
T Consensus 3 ~~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~-----~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk------~ 67 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRAS-----VNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGK------V 67 (1143)
T ss_pred cceeeeecccceeE-EEechHHHHHHHHHHHHHh-----cccc--cccceeeecceeeccchhhhhccC-CCe------E
Confidence 34899999999999 9999999999999999754 4677 699999999999999999999999 574 8
Q ss_pred EEEEeCCCCc
Q 033531 88 MHVVVQPPST 97 (117)
Q Consensus 88 mhlv~~~~~~ 97 (117)
+||+-|+.++
T Consensus 68 ~hlverppp~ 77 (1143)
T KOG4248|consen 68 IHLVERPPPQ 77 (1143)
T ss_pred EEeeccCCCC
Confidence 8999996654
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.95 E-value=1.4e-09 Score=74.11 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=50.7
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecC-CCCcccccCCCCCCCCCCeEEEEEEeCCCCc
Q 033531 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE-NNRTLGECRSPLCDIPGGVTTMHVVVQPPST 97 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~-D~~tL~~~~i~~g~~~~~~~tmhlv~~~~~~ 97 (117)
+++++++||.+||.+|... .++| |.+|||+|.|+.|. |..||++||+..+ ++++|.+..+..
T Consensus 19 L~V~~~~TVg~LK~lImQ~-----f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sg------Svl~LlideP~~ 81 (107)
T cd01795 19 LLVSANQTLKELKIQIMHA-----FSVA--PFDQNLSIDGKILSDDCATLGTLGVIPE------SVILLKADEPIA 81 (107)
T ss_pred EEeCccccHHHHHHHHHHH-----hcCC--cccceeeecCceeccCCccHHhcCCCCC------CEEEEEecCCcc
Confidence 7899999999999999754 3455 79999999999995 7789999999866 366777765543
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.93 E-value=4e-09 Score=69.27 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=50.2
Q ss_pred CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeE-EecCe-----ec-CCCCcccccCCCCCCCCCCeEEEE
Q 033531 17 GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL-ISAGK-----IL-ENNRTLGECRSPLCDIPGGVTTMH 89 (117)
Q Consensus 17 G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrL-I~~Gk-----~L-~D~~tL~~~~i~~g~~~~~~~tmh 89 (117)
....+ ..++++.||.+||++|+.. .|+| ++.||| +|.|+ .| +|..+|++|++.+|. +||
T Consensus 12 ~~~~e-kr~~~~~Tv~~lK~kl~~~-----~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~------~Ih 77 (84)
T cd01789 12 SFSFE-KKYSRGLTIAELKKKLELV-----VGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGC------RIH 77 (84)
T ss_pred ceeee-EecCCCCcHHHHHHHHHHH-----HCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCC------EEE
Confidence 44454 6799999999999999543 5776 799999 59999 46 688899999999883 788
Q ss_pred EEe
Q 033531 90 VVV 92 (117)
Q Consensus 90 lv~ 92 (117)
++=
T Consensus 78 VvD 80 (84)
T cd01789 78 VID 80 (84)
T ss_pred EEe
Confidence 764
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.85 E-value=2.3e-08 Score=60.75 Aligned_cols=72 Identities=29% Similarity=0.428 Sum_probs=60.8
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmh 89 (117)
+.+++..|++.. +++.++.+|..+|.+|. ...++| ..+|+|.|.|+.|.|+.+|.+|+|..+ .++|
T Consensus 2 ~~~~~~~gk~~~-~~~~~~~~i~~~k~~i~-----~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~------~~~~ 67 (75)
T KOG0001|consen 2 IFVKTLDGKTIT-LEVSPSDTIEVVKAKIR-----DKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEG------STLH 67 (75)
T ss_pred EEEEecCCCEEE-EEecCCCHHHHHHHHHH-----hhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCC------CEEE
Confidence 456678899998 99999999999999995 445676 689999999999999999999999865 4778
Q ss_pred EEeCCC
Q 033531 90 VVVQPP 95 (117)
Q Consensus 90 lv~~~~ 95 (117)
++.+..
T Consensus 68 l~~~~~ 73 (75)
T KOG0001|consen 68 LVLSLR 73 (75)
T ss_pred EEEecC
Confidence 777654
No 41
>PLN02560 enoyl-CoA reductase
Probab=98.77 E-value=1.9e-08 Score=80.29 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=60.6
Q ss_pred EEEEEeCCCcee--eeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec---C----eecCCCCcccccCCCCC
Q 033531 9 EIKFRLTDGSDI--GPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---G----KILENNRTLGECRSPLC 79 (117)
Q Consensus 9 ~i~~~~~~G~~~--~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---G----k~L~D~~tL~~~~i~~g 79 (117)
.|.++..+|+.+ ..+++++++||++||++|.++ .++. ++++|||++. | +.|+|+++|+++++.+|
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~-----~~~~-~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~g 75 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKR-----KKKY-YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDG 75 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHH-----cCCC-ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCC
Confidence 466777789887 238999999999999999654 3331 2699999983 4 48999999999999866
Q ss_pred CCCCCeEEEEEEeCCCCchhhh
Q 033531 80 DIPGGVTTMHVVVQPPSTEKEK 101 (117)
Q Consensus 80 ~~~~~~~tmhlv~~~~~~~~~~ 101 (117)
. + |.++.+|||=.+
T Consensus 76 s------t--Ly~kDLGpQi~w 89 (308)
T PLN02560 76 G------T--VVFKDLGPQVSY 89 (308)
T ss_pred c------e--EEEEeCCCcCch
Confidence 2 3 558888887654
No 42
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.77 E-value=1.8e-08 Score=68.27 Aligned_cols=59 Identities=29% Similarity=0.504 Sum_probs=46.3
Q ss_pred EEEEeCCCc-eeeeeecC--CCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccccc
Q 033531 10 IKFRLTDGS-DIGPKSFP--AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (117)
Q Consensus 10 i~~~~~~G~-~~~~l~~~--~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 74 (117)
|.+|+.++. ++. ++++ .++||..||..|++.+|.+.. -..+||||+||+|.|...|+..
T Consensus 3 l~IRFs~sipDl~-L~I~~~~~~Tv~~LK~lIR~~~p~~~s-----~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLP-LDIPSPNTTTVAWLKQLIRERLPPEPS-----RRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCce-eecCCCCcccHHHHHHHHHhhcCCCCc-----cccEEeeecCcccCccchhhhh
Confidence 556666633 444 7777 899999999999998864433 5899999999999999888753
No 43
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.66 E-value=6.1e-08 Score=67.39 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=54.3
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC-CCCeE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGGVT 86 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~~~~ 86 (117)
+.+.||-. -.++. +...+++||.+||++|. +--..| ++.|||+..+.+|+|++||++||+..... ...+.
T Consensus 3 vFlmIrR~-KTTiF-~dakes~tVlelK~~ie-----gI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA 73 (119)
T cd01788 3 VFLMIRRH-KTTIF-TDAKESTTVYELKRIVE-----GILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPA 73 (119)
T ss_pred eEEEEEec-ceEEE-eecCCcccHHHHHHHHH-----HHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCC
Confidence 44444432 22444 78899999999999993 333456 79999998888999999999999943211 12245
Q ss_pred EEEEEeC
Q 033531 87 TMHVVVQ 93 (117)
Q Consensus 87 tmhlv~~ 93 (117)
++-|.++
T Consensus 74 ~vgLa~r 80 (119)
T cd01788 74 TVGLAFR 80 (119)
T ss_pred eEEEEEe
Confidence 6777777
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.53 E-value=2.7e-07 Score=59.32 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHhhhcCCCcccCCCCCCCceeE--EecCeecCCCCcccccCCCCC
Q 033531 26 PAATSVATLKESVLSQWPKEKENGPRTVKDVKL--ISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 26 ~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~g 79 (117)
+++.||.+||+.|+..++ ..+ +++||| ++.|+.|.|+++|.++|+.+|
T Consensus 20 ~~~aTV~dlk~~i~~~~~----~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g 69 (77)
T cd01801 20 SGDATIADLKKLIAKSSP----QLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAG 69 (77)
T ss_pred CCCccHHHHHHHHHHHcC----CCC--cceeEEEeCCCCcccCCcccHhhcCCCCC
Confidence 588999999999976531 223 578777 699999999999999999866
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.47 E-value=5e-07 Score=59.22 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=50.5
Q ss_pred eEEEEEeCC--CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec----Ce----ecCCCCcccccCCC
Q 033531 8 LEIKFRLTD--GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA----GK----ILENNRTLGECRSP 77 (117)
Q Consensus 8 ~~i~~~~~~--G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~----Gk----~L~D~~tL~~~~i~ 77 (117)
|.|.|.... +...+ ..++++.||.+||.+|... .|+| ++.|||.+. |. ..+|..+|.+|++.
T Consensus 2 v~l~It~~~~~~~~~e-kr~~~~~Tv~eLK~kl~~~-----~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~ 73 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVE-KRFPKSITVSELKQKLEKL-----TGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK 73 (87)
T ss_dssp EEEEEEESSSSSSEEE-EEEETTSBHHHHHHHHHHH-----HTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred EEEEEEeCCCCCeeEE-EEcCCCCCHHHHHHHHHHH-----hCCC--cccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence 445554433 34777 8999999999999999654 5777 799999876 21 33688999999999
Q ss_pred CCCCCCCeEEEEEE
Q 033531 78 LCDIPGGVTTMHVV 91 (117)
Q Consensus 78 ~g~~~~~~~tmhlv 91 (117)
+| .++|+.
T Consensus 74 dg------~~i~V~ 81 (87)
T PF14560_consen 74 DG------MRIHVV 81 (87)
T ss_dssp TT------EEEEEE
T ss_pred CC------CEEEEE
Confidence 87 466754
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.26 E-value=6.8e-06 Score=46.90 Aligned_cols=60 Identities=32% Similarity=0.436 Sum_probs=49.7
Q ss_pred EeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 13 RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 13 ~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+..+|.... +.+.+..|+.+||.+|...++ .+ ++.++|.+.|+.+++...+.++++..++
T Consensus 3 ~~~~~~~~~-~~~~~~~tv~~l~~~i~~~~~-----~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (69)
T cd00196 3 KLNDGKTVE-LLVPSGTTVADLKEKLAKKLG-----LP--PEQQRLLVNGKILPDSLTLEDYGLQDGD 62 (69)
T ss_pred EecCCCEEE-EEcCCCCcHHHHHHHHHHHHC-----cC--hHHeEEEECCeECCCCCcHHHcCCCCCC
Confidence 344677777 899999999999999987643 33 6899999999999999888888888663
No 47
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3.8e-06 Score=67.82 Aligned_cols=63 Identities=27% Similarity=0.414 Sum_probs=49.5
Q ss_pred eEEEEEeC-CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCC
Q 033531 8 LEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPL 78 (117)
Q Consensus 8 ~~i~~~~~-~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~ 78 (117)
+.|.|+-. +...+. ++++.+++|.+||+.++.. .++| ++++|+||+||.|.|+.|+..|.+..
T Consensus 3 ~lvqf~~~~~~h~l~-v~v~~~t~I~~lke~Vak~-----~gvp--~D~L~viFaGKeLs~~ttv~~cDL~q 66 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLP-VEVDSDTSIFQLKEVVAKR-----QGVP--ADQLRVIFAGKELSNDTTVQNCDLSQ 66 (446)
T ss_pred EEEEeCCccccCcee-EEEecCCCHHHHHHHHHHh-----hCCC--hhheEEEEeccccccCceeecccccc
Confidence 34555422 233455 8999999999999999654 5677 79999999999999999999888764
No 48
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.00 E-value=7.3e-05 Score=48.00 Aligned_cols=71 Identities=30% Similarity=0.410 Sum_probs=53.5
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeecCCC--CcccccCCC
Q 033531 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILENN--RTLGECRSP 77 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~D~--~tL~~~~i~ 77 (117)
|+.++.+.|+||+.+|..+. ..|.+++||.+|.+-|..+.. .+. ....+|+ |-.|.|.+. .||+++++.
T Consensus 1 ~~~~~~~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~~-----~~~-~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~ 73 (82)
T PF00789_consen 1 SEESDVVRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQLF-----SPE-ESDFELITAFPRRELTDEDSKTLEEAGLL 73 (82)
T ss_dssp -STSSEEEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHHH-----CTT-TSSEEEEESSSTEECCSTTTSBTCCCTTS
T ss_pred CCCCCEEEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhcC-----CCC-CccEEEEeCCCCcCCCccccccHHHhcCC
Confidence 46678999999999999998 899999999999999975521 111 1236776 556777644 699999886
Q ss_pred CC
Q 033531 78 LC 79 (117)
Q Consensus 78 ~g 79 (117)
.+
T Consensus 74 p~ 75 (82)
T PF00789_consen 74 PS 75 (82)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 49
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.84 E-value=5.4e-05 Score=49.17 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=50.5
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec---Ce--ecCCCCcccccCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---GK--ILENNRTLGECRSP 77 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---Gk--~L~D~~tL~~~~i~ 77 (117)
|+++++-..+.+.. +.++|..+|..+|++|+..| +. ..+|||-|. |+ .|.+..+|++|||=
T Consensus 1 iqVtV~q~g~~dl~-l~vnPy~pI~k~K~kI~~~~-----~~---~g~qrLsfQepgg~rqlL~s~~sLA~yGiF 66 (80)
T cd01811 1 IQVTVEQTGYSDWI-LRVNPYSPIRKIKEKIRRSR-----NC---SGLQRLSFQEPGGERQLLSSRKSLADYGIF 66 (80)
T ss_pred CEEEeeecCCCceE-EEeCCcchHHHHHHHHHHhh-----Cc---ccceEEEeecCCcccccccccccHhhhcce
Confidence 46777777788888 99999999999999998876 34 479999985 33 67899999999984
No 50
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.82 E-value=0.00021 Score=46.43 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=52.6
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeecC-CCCcccccCCCC
Q 033531 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE-NNRTLGECRSPL 78 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~-D~~tL~~~~i~~ 78 (117)
+....|.||+.+|+++. ..|..++||.+|.+-|..+.|... .....|. |=.|.|. ++.||+|+|+..
T Consensus 2 ~p~t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~~~------~~~f~L~t~fP~k~l~~~~~Tl~eagL~~ 71 (79)
T cd01770 2 EPTTSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPEFA------ARPFTLMTAFPVKELSDESLTLKEANLLN 71 (79)
T ss_pred CCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCCCC------CCCEEEecCCCCcccCCCCCcHHHCCCcC
Confidence 45789999999999998 899999999999999987654211 2345565 5577674 578999999984
No 51
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.80 E-value=7.4e-05 Score=48.78 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=37.5
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec--C-eec--CCCCcccccCCCCCC
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA--G-KIL--ENNRTLGECRSPLCD 80 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~--G-k~L--~D~~tL~~~~i~~g~ 80 (117)
.+.|+||..+|..- +++++++|+.+||++|.+..+ +| ...+.|... + ..| .++.+|+++||+.||
T Consensus 4 ~milRvrS~dG~~R--ie~~~~~t~~~L~~kI~~~l~-----~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 4 SMILRVRSKDGMKR--IEVSPSSTLSDLKEKISEQLS-----IP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp --EEEEE-SSEEEE--EEE-TTSBHHHHHHHHHHHS----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred cEEEEEECCCCCEE--EEcCCcccHHHHHHHHHHHcC-----CC--CcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 68899999999654 799999999999999987643 43 234444211 1 234 478899999999996
No 52
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.62 E-value=9.4e-05 Score=50.29 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=49.9
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC--eecCCCCcccccCCCCCCC-CCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILENNRTLGECRSPLCDI-PGG 84 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g~~-~~~ 84 (117)
+.+++|- .-.++. +..+++.||-+||.+++. .-..| ++.|||...- ..|+|++||++||+..... +..
T Consensus 3 ~f~~VrR-~kttif-~da~es~tV~elK~~l~g-----i~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~ 73 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIF-TDAKESSTVFELKRKLEG-----ILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQA 73 (110)
T ss_pred eeeeeee-cceeEE-eecCccccHHHHHHHHHH-----HHhCC--CcchheeecCHHHHhhccchhhhccccccccccCC
Confidence 4445543 222444 788999999999999942 23346 7999998844 4889999999998764332 333
Q ss_pred eEEEEE
Q 033531 85 VTTMHV 90 (117)
Q Consensus 85 ~~tmhl 90 (117)
+.++-|
T Consensus 74 pA~vgL 79 (110)
T KOG4495|consen 74 PATVGL 79 (110)
T ss_pred Cceeee
Confidence 444443
No 53
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.27 E-value=0.00085 Score=43.13 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=47.3
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE-ecCeecCCCCcccccCCCCCC
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI-SAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.++|.|....|+.+. +.++...+|++|...|.........+.+ .....+|. -.|+.|+++.||+++++.+|+
T Consensus 2 ~~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~~~~~-~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPGDDPP-GHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S---T-T-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCccCCCC-CcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 356777776678888 9999999999999999875432111211 12257777 789999999999999999996
No 54
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.26 E-value=0.0025 Score=41.92 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=52.4
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC--eecC--------CCCcccccC
Q 033531 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE--------NNRTLGECR 75 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~--------D~~tL~~~~ 75 (117)
+.++|.||+.+|.++. -.|..++||++|..-|... + . .++..+|+++= |.+. .+.||+++|
T Consensus 3 ~~~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~~-~----~---~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG 73 (85)
T cd01774 3 DTVKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFSL-K----E---TPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG 73 (85)
T ss_pred ceEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhC-C----C---CCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence 4789999999999998 8999999999999999532 1 1 24788888877 7885 367999999
Q ss_pred CCC
Q 033531 76 SPL 78 (117)
Q Consensus 76 i~~ 78 (117)
+..
T Consensus 74 L~~ 76 (85)
T cd01774 74 LSN 76 (85)
T ss_pred CCC
Confidence 974
No 55
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.09 E-value=0.0054 Score=39.02 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=48.9
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeecC---CCCcccccCCC
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSP 77 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~ 77 (117)
+..|.||+.+|..+. ..|..++||.+|.+-|..+... ....+|+ |-.|.+. ++.||+++|+.
T Consensus 2 ~t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~ 68 (77)
T cd01767 2 TTKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLV 68 (77)
T ss_pred cEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCc
Confidence 578999999999998 8999999999999999765321 2445565 3456674 47899999997
No 56
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.05 E-value=0.0049 Score=39.52 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=48.5
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeecCC---CCcccccCCC
Q 033531 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILEN---NRTLGECRSP 77 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~ 77 (117)
+..+|.||+.+|.++. ..|.+++||.+|.+-|.... +.. ....+|+ |-.|.|.+ +.||.++++.
T Consensus 3 ~~~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~-----~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~ 71 (80)
T smart00166 3 DQCRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAAL-----TDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALL 71 (80)
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHcc-----cCC--CCCEEEEeCCCCcCCccccccCCHHHCCCC
Confidence 5789999999999998 89999999999999995432 111 2345554 45567764 4799999975
No 57
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0064 Score=41.37 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=53.3
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+.|.|||+=-+|..+. |.+.-++....|...-... .|++ -+.+|++|.|+-+.+.+|-++++..+||
T Consensus 19 ~hi~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r-----~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D 85 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCER-----QGLS--MNSLRFLFDGQRIRETHTPADLEMEDGD 85 (99)
T ss_pred ceEEEEEecCCCCEEE-EEeecCChHHHHHHHHHHH-----cCCc--cceEEEEECCcCcCCCCChhhhCCcCCc
Confidence 4455555544566666 8999999999888887543 4555 6999999999999999999999999887
No 58
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.00 E-value=0.0073 Score=38.92 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=49.1
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeecCC---CCcccccCCCC
Q 033531 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILEN---NRTLGECRSPL 78 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~ 78 (117)
...+|.||+.+|.++. ..|+.++|+.+|.+-|...+.. ....+|+ |=-|.+.+ +.||.++|+..
T Consensus 3 ~~~~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~P 71 (79)
T cd01772 3 TETRIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVP 71 (79)
T ss_pred cEEEEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCC
Confidence 4688999999999998 8999999999999999765421 1234454 44567753 57999999874
No 59
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00039 Score=56.49 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=46.9
Q ss_pred eeEEEEEeCC--CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccC
Q 033531 7 QLEIKFRLTD--GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECR 75 (117)
Q Consensus 7 ~~~i~~~~~~--G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 75 (117)
.+.+.++..+ -++++ +..+-..||.+||.++..-.|. .|. ...|||||+||.|.|...|+|.=
T Consensus 9 ~v~lliks~Nq~y~dl~-i~~dl~wtv~~Lk~hls~VyPs----kpl-~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLS-ISLDLKWTVGDLKVHLSQVYPS----KPL-ELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred ceEEEecCCCcccccee-eehhhhhhHHHHhhhHhhcCCC----CCc-hhhHHHHhhccccccchhHHHHH
Confidence 3444444443 33455 6667889999999999877763 333 58999999999999999999853
No 60
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0055 Score=51.55 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=47.8
Q ss_pred CCceeeeee-cCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCC
Q 033531 16 DGSDIGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 16 ~G~~~~~l~-~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 79 (117)
.|+.+. .+ ++.++|+..+|.+|. ...+.| |++||+.+.|+.|.|+--+...+|+.|
T Consensus 11 ~gk~y~-v~~l~~d~t~~vlKaqlf-----~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn 67 (473)
T KOG1872|consen 11 GGKKYP-VETLSTDETPSVLKAQLF-----ALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPN 67 (473)
T ss_pred cCcccc-ceeccCCCchHHHHHHHH-----HhcCCC--ccceeEEEecccccccccccccccCCC
Confidence 566666 55 899999999999995 456776 799999999999999988888999876
No 61
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0028 Score=48.53 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=53.3
Q ss_pred eeEEEEEeC-CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCC
Q 033531 7 QLEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 7 ~~~i~~~~~-~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 79 (117)
+..++.++. ++..+. +.....+|+.++|..+.+. ++.. +-.||++|+|++|-|..-|++|++..|
T Consensus 145 e~~lk~rlTtT~~d~~-lta~~~Dtv~eik~~L~Aa-----eg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg 210 (231)
T KOG0013|consen 145 EPILKLRLTTTREDFW-LTAPHYDTVGEIKRALRAA-----EGVD--PLSQRIFFSGGVLVDKTDLEECKIEKG 210 (231)
T ss_pred CcchHHHhhhhhhhee-ecccCcCcHHHHHHHHHHh-----hccc--hhhheeeccCCceeccccceeeeecCC
Confidence 445566665 677888 8899999999999999765 3332 479999999999999999999999876
No 62
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.55 E-value=0.023 Score=41.88 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=54.1
Q ss_pred eEEEEEeCCC----ceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec-Ceec--CCCCcccccCCCCCC
Q 033531 8 LEIKFRLTDG----SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA-GKIL--ENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G----~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~-Gk~L--~D~~tL~~~~i~~g~ 80 (117)
|+|.+.+.+| .++. +.+++++||.+|+.+|... .+.|. ..++-|.+. |+.| .++..+..+--...+
T Consensus 1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~-----~~~~~-~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSER-----LPIPS-SSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhh-----cCCCc-cceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 5788889999 4777 8999999999999999544 34442 222345443 4444 455555554432221
Q ss_pred CCCCeEEEEEEeCCCCchh
Q 033531 81 IPGGVTTMHVVVQPPSTEK 99 (117)
Q Consensus 81 ~~~~~~tmhlv~~~~~~~~ 99 (117)
...++++|.++..|..-
T Consensus 74 --~~~~~l~l~~rl~GGKG 90 (162)
T PF13019_consen 74 --SDFITLRLSLRLRGGKG 90 (162)
T ss_pred --CCceEEEEEEeccCCCc
Confidence 12578999999998643
No 63
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.02 E-value=0.054 Score=35.27 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=54.2
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+.+-|+-=.|.++. +.++.-.+|+.|-..+++.. ..+-.+.+-..+|..-.+++|.++..|.+|+|.+||
T Consensus 7 VTvD~t~y~g~~yD-Lrl~d~~pikklIdivwe~~--kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 7 VTVDFTNYNGGTYD-LRLPDYLPIKKLIDIVWESL--KISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEeEecCCceEE-EeccccchHHHHHHHHHHHh--hccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 44455555788998 99999999999988887542 222223334689999999999999999999999997
No 64
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.01 E-value=0.084 Score=34.24 Aligned_cols=67 Identities=22% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeecC---CCCcccccCCCC
Q 033531 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSPL 78 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~ 78 (117)
+++.++|.||+.+|..+. -.|..++++.+|-.-|..+ +.+ +...+|+ |==|.+. -+.||.++|+..
T Consensus 1 ~~~~~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~------~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p 71 (80)
T cd01771 1 GEPISKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK------GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP 71 (80)
T ss_pred CCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence 356899999999999998 8999999999999999643 222 3456664 3345553 356999999874
Q ss_pred C
Q 033531 79 C 79 (117)
Q Consensus 79 g 79 (117)
.
T Consensus 72 ~ 72 (80)
T cd01771 72 Q 72 (80)
T ss_pred C
Confidence 3
No 65
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.14 E-value=0.15 Score=33.54 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=48.7
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeec---CCCCcccccCCCCC
Q 033531 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL---ENNRTLGECRSPLC 79 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~~g 79 (117)
.+...|.||+.+|..++ -.|..++++.+|-.-|... +.+ ++..+|+ |==|.+ +.+.||.++|+...
T Consensus 3 ~~~t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~~------g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~ 73 (82)
T cd01773 3 GPKARLMLRYPDGKREQ-IALPEQAKLLALVRHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQ 73 (82)
T ss_pred CCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCCC
Confidence 35778999999999999 8999999999999998642 122 3455554 223344 44579999999744
No 66
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.13 Score=34.81 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=50.1
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
|.|++.--+|..+- +.+--+++...|=+...+. .|.. -+.+|++|.|+-++-++|.+++++..++
T Consensus 25 inLkvv~qd~telf-FkiKktT~f~klm~af~~r-----qGK~--m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 25 INLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRR-----QGKN--MSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred cceEEecCCCCEEE-EEEeccchHHHHHHHHHHH-----hCcC--cceeEEEEcceecCCCCChhhcCCccch
Confidence 44555445677777 8999999988887777655 2222 5899999999999999999999998664
No 67
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.16 E-value=0.13 Score=33.12 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=44.2
Q ss_pred cCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccC-CCCCCCCCCeEEEEEEeCCCC
Q 033531 25 FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECR-SPLCDIPGGVTTMHVVVQPPS 96 (117)
Q Consensus 25 ~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~-i~~g~~~~~~~tmhlv~~~~~ 96 (117)
|.++++|.+|++.|... ..- ..-....|.+.|+.|+|...|++.. +.+| .++.++..+=.
T Consensus 1 v~~~d~v~dvrq~L~~~-----~~t-~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~------~~L~lve~pYt 61 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-----PET-CYLTNFSLEHNGQRLDDFVELSEIEGIKDG------CVLELVEEPYT 61 (76)
T ss_pred CChhhHHHHHHHHHHhC-----ccc-cceeEEEEEECCCccCCchhhhhhhCCCCC------cEEEEEecCCC
Confidence 46889999999999643 211 1257899999999999999998864 6644 47777766544
No 68
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.021 Score=36.24 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=47.4
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCC
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 79 (117)
+.++-.-|+.+. +.-.+++||.++|..|+.+ .|-- ++.+.|=--+-+++|.-+|++|.+.+|
T Consensus 4 v~~nDrLGKKVR-vKCn~dDtiGD~KKliaaQ-----tGT~--~~kivl~k~~~i~kd~I~L~dyeihdg 65 (73)
T KOG3493|consen 4 VVLNDRLGKKVR-VKCNTDDTIGDLKKLIAAQ-----TGTR--PEKIVLKKWYTIFKDHITLSDYEIHDG 65 (73)
T ss_pred ehhhhhcCceEE-EEeCCcccccCHHHHHHHh-----hCCC--hhHhHHHhhhhhhhcccceeeEEeccC
Confidence 344445688887 7889999999999999765 3321 466666666668899999999999876
No 69
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=92.92 E-value=0.29 Score=40.44 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=51.7
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeec-CCCCcccccCCCC
Q 033531 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL-ENNRTLGECRSPL 78 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L-~D~~tL~~~~i~~ 78 (117)
..+.+-.|.+|+.+|..+- ..|+-+-||.+++..|...-|.+- ...+-|+ |=-|.| +|+.||+++++..
T Consensus 301 ~~~PtTsIQIRLanG~RlV-~~fN~sHTv~DIR~fI~~aRp~~~------~~~F~L~~~FPpk~l~D~sqTle~AgL~N 372 (380)
T KOG2086|consen 301 PAEPTTSIQIRLANGTRLV-LKFNHSHTVSDIREFIDTARPGDS------STYFILMMAFPPKPLSDDSQTLEEAGLLN 372 (380)
T ss_pred CCCCcceEEEEecCCceee-eeccCcccHHHHHHHHHhcCCCCc------CCceeeeecCCCcccCCcchhHHhccchh
Confidence 3456889999999999997 999999999999999987655322 1233333 233556 5778999999973
No 70
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=91.49 E-value=0.83 Score=28.91 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=38.3
Q ss_pred CCceeeeeecCCC-CcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 16 DGSDIGPKSFPAA-TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G~~~~~l~~~~~-~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.|.....++++++ .||.+|++.|.+..|.-.. . ...+++..+|+...++ ..+++||
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~-~---~~~~~v~vn~~~v~~~-----~~l~dgD 69 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPELAA-S---RGQVMVAVNEEYVTDD-----ALLNEGD 69 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCchhhh-h---ccceEEEECCEEcCCC-----cCcCCCC
Confidence 4654433788876 8999999999887662111 1 3567888899988764 4556665
No 71
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.87 E-value=0.75 Score=29.21 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=38.5
Q ss_pred EEEEEeC------CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 9 EIKFRLT------DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 9 ~i~~~~~------~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.|++++. .|.+...++++...||.+|++.|....|. .... .....+..+|+...++. -+.+||
T Consensus 3 ~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~-l~~~---~~~~~vavN~~~v~~~~-----~l~dgD 71 (82)
T PLN02799 3 EIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPS-LEEV---RSCCVLALNEEYTTESA-----ALKDGD 71 (82)
T ss_pred EEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChh-HHHH---hhCcEEEECCEEcCCCc-----CcCCCC
Confidence 4555553 56444347888999999999999766442 1111 12345777888875443 445565
No 72
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.58 E-value=1.8 Score=26.94 Aligned_cols=71 Identities=20% Similarity=0.102 Sum_probs=50.3
Q ss_pred EEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe----cC--eecCCCCcccccCCCCCCCCCCe
Q 033531 12 FRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS----AG--KILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 12 ~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~----~G--k~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
|++.+|...+ +++++++|+.+|=+.|..+ -++. +.+..=|-| .| ..|+.+++|.+.....+. +
T Consensus 1 V~llD~~~~~-~~v~~~~t~~~l~~~v~~~-----l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~----~ 69 (80)
T PF09379_consen 1 VRLLDGTTKT-FEVDPKTTGQDLLEQVCDK-----LGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNP----P 69 (80)
T ss_dssp EEESSEEEEE-EEEETTSBHHHHHHHHHHH-----HTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSS----S
T ss_pred CCCcCCCcEE-EEEcCCCcHHHHHHHHHHH-----cCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCCC----C
Confidence 5678999998 9999999999999999765 2443 256777777 33 478888888887655221 3
Q ss_pred EEEEEEeC
Q 033531 86 TTMHVVVQ 93 (117)
Q Consensus 86 ~tmhlv~~ 93 (117)
.++++.++
T Consensus 70 ~~l~frvk 77 (80)
T PF09379_consen 70 FTLYFRVK 77 (80)
T ss_dssp EEEEEEES
T ss_pred EEEEEEEE
Confidence 56676654
No 73
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=89.62 E-value=0.86 Score=36.12 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=45.9
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCC-CCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEEEEeCCCCchhhh
Q 033531 23 KSFPAATSVATLKESVLSQWPKEKENGPR-TVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKEK 101 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~-~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv~~~~~~~~~~ 101 (117)
...+.+.||+++++.+.++ +..-.|. .....|+--.|+.|.|+++|++++...|. .+.++.+||+-.+
T Consensus 17 ~~~s~~~ti~d~~~~~~~~---~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~--------~i~vKDLGpQI~w 85 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAK---NLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA--------TIYVKDLGPQISW 85 (297)
T ss_pred ecCCCCCcHHHHHHHHHHh---hhccCccchhheeeccCCCccccchhHHHHhccCCCC--------EEEEeccCCccch
Confidence 4567788999999888643 1111110 02344555679999999999999987552 3568888887654
No 74
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=1.4 Score=33.99 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=40.4
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeE-EecC-----eecC-CCCcccccCCCCCCCCCCeEEEEEE
Q 033531 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL-ISAG-----KILE-NNRTLGECRSPLCDIPGGVTTMHVV 91 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrL-I~~G-----k~L~-D~~tL~~~~i~~g~~~~~~~tmhlv 91 (117)
-.++++.||+++|.+|+- ..|.+ ++.++| +|.| -.|+ ++..|..|+..+| ..+|++
T Consensus 17 kr~~~~ltl~q~K~KLe~-----~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg------~rihvi 79 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLEL-----LTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDG------LRIHVI 79 (234)
T ss_pred hhcCCcCcHHHHHhhhhh-----hhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCc------eEEEEE
Confidence 577899999999999943 34554 688888 6776 2554 5567778887766 356654
No 75
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.39 E-value=2.6 Score=26.23 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=32.3
Q ss_pred eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 19 ~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
... +++++..||++|-+.+ +++ .....+..+|+++..+. .+++||
T Consensus 15 ~~~-~~~~~~~tv~~ll~~l---------~~~--~~~v~v~vNg~iv~~~~-----~l~~gD 59 (70)
T PRK08364 15 EKE-IEWRKGMKVADILRAV---------GFN--TESAIAKVNGKVALEDD-----PVKDGD 59 (70)
T ss_pred ceE-EEcCCCCcHHHHHHHc---------CCC--CccEEEEECCEECCCCc-----CcCCCC
Confidence 444 7888999999999888 233 46688889999986543 455565
No 76
>PRK06437 hypothetical protein; Provisional
Probab=88.28 E-value=2.5 Score=26.23 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=35.5
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.++.-+ +++++..||++|=+.+ +++ +..+-++.+|+++..+ ..+++||
T Consensus 9 g~~~~~-~~i~~~~tv~dLL~~L---------gi~--~~~vaV~vNg~iv~~~-----~~L~dgD 56 (67)
T PRK06437 9 GHINKT-IEIDHELTVNDIIKDL---------GLD--EEEYVVIVNGSPVLED-----HNVKKED 56 (67)
T ss_pred CCcceE-EEcCCCCcHHHHHHHc---------CCC--CccEEEEECCEECCCc-----eEcCCCC
Confidence 455566 7889999999987776 343 5788899999999744 4555665
No 77
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.83 E-value=4.5 Score=25.76 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCc-eeeeeecCCCCcHHHHHHHhhhcCCCcccCC-CC---CCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 16 DGS-DIGPKSFPAATSVATLKESVLSQWPKEKENG-PR---TVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G~-~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~-p~---~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.|. ..+ ++++ ..||.+|.+.|.+++|.....+ .. -...+++..+|+..++... ..+++||
T Consensus 13 ~g~~~~~-v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd 77 (88)
T TIGR01687 13 TGKKSEE-IEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD 77 (88)
T ss_pred hCCceEE-EEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC
Confidence 454 344 6776 8999999999998887433211 00 0235788889998865432 4566675
No 78
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=87.72 E-value=3.4 Score=25.58 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=38.1
Q ss_pred CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 17 GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 17 G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
|.....+++++..||.+|.+.+..++|.. .+.. ....++..+|+...++ ..+.+||
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~~~--~~~~~v~vNg~~v~~~-----~~l~~gD 69 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL-LEEL--LARVRIAVNGEYVRLD-----TPLKDGD 69 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH-HHhh--hhcEEEEECCeEcCCC-----cccCCCC
Confidence 54322278888999999999998887641 1111 3577888899988743 4566665
No 79
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=86.96 E-value=3.7 Score=25.64 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=38.3
Q ss_pred eCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCC
Q 033531 14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 14 ~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 79 (117)
..+|++.. +.+.|++++.++=+....++ ++. +++-.|.|++|.|+-+.+++-.|++.|
T Consensus 3 ~~~~rr~~-vkvtp~~~l~~VL~eac~k~-----~l~--~~~~~L~h~~k~ldlslp~R~snL~n~ 60 (65)
T PF11470_consen 3 CYNFRRFK-VKVTPNTTLNQVLEEACKKF-----GLD--PSSYDLKHNNKPLDLSLPFRLSNLPNN 60 (65)
T ss_dssp -TTS-EEE-E---TTSBHHHHHHHHHHHT-----T----GGG-EEEETTEEESSS-BHHHH---SS
T ss_pred ccCCcEEE-EEECCCCCHHHHHHHHHHHc-----CCC--ccceEEEECCEEeccccceeecCCCCC
Confidence 34678888 89999999999888877653 343 578899999999999889888888866
No 80
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=86.26 E-value=2.2 Score=26.19 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 19 ~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
... +.++...||.+|.+.+..++|... . ....++..+|+...+ . -.+..+++||
T Consensus 13 ~~~-~~~~~~~tv~~ll~~l~~~~p~~~---~--~~~~~v~vN~~~v~~-~-~~~~~l~~gD 66 (77)
T PF02597_consen 13 EEE-IEVPEGSTVRDLLEALAERYPELA---L--RDRVAVAVNGEIVPD-D-GLDTPLKDGD 66 (77)
T ss_dssp EEE-EEESSTSBHHHHHHHHCHHTGGGH---T--TTTEEEEETTEEEGG-G-TTTSBEETTE
T ss_pred CeE-EecCCCCcHHHHHHHHHhhccccc---c--CccEEEEECCEEcCC-c-cCCcCcCCCC
Confidence 344 688999999999999988876544 1 478999999999988 2 3334555664
No 81
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=83.32 E-value=4.6 Score=26.71 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.9
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcC
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQW 42 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~w 42 (117)
.||+..+|+++. +.+.|+.++.+|++.|....
T Consensus 3 FK~~~~~GrvhR-f~~~~s~~~~~L~~~I~~Rl 34 (86)
T cd06409 3 FKFKDPKGRVHR-FRLRPSESLEELRTLISQRL 34 (86)
T ss_pred EEeeCCCCCEEE-EEecCCCCHHHHHHHHHHHh
Confidence 578888999998 99999999999999998764
No 82
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=83.12 E-value=6 Score=25.19 Aligned_cols=69 Identities=12% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeE-EecCeecCCCCcccccCCCCCCCCCCeEEEEEEeC
Q 033531 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL-ISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQ 93 (117)
Q Consensus 15 ~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrL-I~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv~~ 93 (117)
+.|..+. ++..+....-.+.++-.++ ..-.+.| ++.--| =-+|..|+-++.++|||+..+ ++++|.++
T Consensus 3 VNGqPv~-VEANvnaPLh~v~akALe~--sgNvgQP--~ENWElkDe~G~vlD~~kKveD~Gftng------vkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQ-VEANVNAPLHPVRAKALEQ--SGNVGQP--PENWELKDESGQVLDVNKKVEDFGFTNG------VKLFLSLK 71 (76)
T ss_pred eCCCcee-eecCCCCcchHHHHHHHhh--ccccCCC--cccceeeccCCcEeeccchhhhcccccc------ceEEEEee
Confidence 4677777 7888877777776665543 1222333 233333 137889998999999999866 67887776
Q ss_pred C
Q 033531 94 P 94 (117)
Q Consensus 94 ~ 94 (117)
.
T Consensus 72 A 72 (76)
T PF10790_consen 72 A 72 (76)
T ss_pred c
Confidence 4
No 83
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.69 E-value=3.6 Score=26.94 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=33.3
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC
Q 033531 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG 62 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G 62 (117)
-||+.+.. ++. +.+++..+..+|+++|.++ -.+| ++.++|-|.-
T Consensus 4 vvKV~f~~--tIa-Irvp~~~~y~~L~~ki~~k-----Lkl~--~e~i~LsYkd 47 (80)
T cd06406 4 VVKVHFKY--TVA-IQVARGLSYATLLQKISSK-----LELP--AEHITLSYKS 47 (80)
T ss_pred EEEEEEEE--EEE-EEcCCCCCHHHHHHHHHHH-----hCCC--chhcEEEecc
Confidence 45555543 777 9999999999999999754 3465 5888888764
No 84
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=82.64 E-value=3.1 Score=29.89 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=45.0
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC------eecCCCCcccccCC
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG------KILENNRTLGECRS 76 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G------k~L~D~~tL~~~~i 76 (117)
.+.++|.+.+|.... +.+++++|+.+|-+.|+.+ -+++. ....-|.+.. +.|+...+|.+...
T Consensus 3 ~~~~~V~l~dg~~~~-~~~~~~~t~~ev~~~v~~~-----~~l~~-~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~ 71 (207)
T smart00295 3 PRVLKVYLLDGTTLE-FEVDSSTTAEELLETVCRK-----LGIRE-SEYFGLQFEDPDEDLSHWLDPAKTLLDQDV 71 (207)
T ss_pred cEEEEEEecCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCCc-cceeEEEEEcCCCCcCeeCCCccCHHHhcC
Confidence 578899999999998 9999999999999999765 34432 4455554321 35665666665543
No 85
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=81.82 E-value=12 Score=24.71 Aligned_cols=70 Identities=6% Similarity=0.039 Sum_probs=41.7
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCC-CceeEEecC--eecCCCCcccccCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTV-KDVKLISAG--KILENNRTLGECRSPLC 79 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~-~~qrLI~~G--k~L~D~~tL~~~~i~~g 79 (117)
+=|.-++...-...-+-++..+|+.++=++++.+ .-.-..+..+ .-+|+-+.| +.+..+.|+++.||..-
T Consensus 4 fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~H--sVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~ 76 (85)
T PF06234_consen 4 FPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHH--SVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPM 76 (85)
T ss_dssp EEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTT--TTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TT
T ss_pred cceeEeeccceEEEEEEeCCCCcHHHHHHHHhhh--hcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcc
Confidence 3344444443322226789999999999999865 1111122113 478888999 99999999999999743
No 86
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=80.88 E-value=6 Score=24.64 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=36.2
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG 62 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G 62 (117)
++.+|+...++.... +.++++.|..+|+.+|...++. + ...++|-|..
T Consensus 1 t~~vK~~~~~~~~~~-~~~~~~~s~~~L~~~i~~~~~~-----~--~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRI-ISLPSDVSFDDLRSKIREKFGL-----L--DEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEE-EEECSTSHHHHHHHHHHHHHTT-----S--TSSEEEEEEE
T ss_pred CEEEEEEECCeeEEE-EEcCCCCCHHHHHHHHHHHhCC-----C--CccEEEEeeC
Confidence 467778777766664 7889999999999999877642 2 3688888753
No 87
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=77.53 E-value=5.8 Score=24.03 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=31.8
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+++++..||.+|.+.+. ++ ...+.+..+|+++..+. -.+..+.+||
T Consensus 9 ~~~~~~~tv~~ll~~l~---------~~--~~~i~V~vNg~~v~~~~-~~~~~L~~gD 54 (65)
T cd00565 9 REVEEGATLAELLEELG---------LD--PRGVAVALNGEIVPRSE-WASTPLQDGD 54 (65)
T ss_pred EEcCCCCCHHHHHHHcC---------CC--CCcEEEEECCEEcCHHH-cCceecCCCC
Confidence 46778899999998882 33 47888999999986431 1123456665
No 88
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=77.46 E-value=4 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.448 Sum_probs=23.8
Q ss_pred EEEEeCCCceeeeeecC-CCCcHHHHHHHhhhc
Q 033531 10 IKFRLTDGSDIGPKSFP-AATSVATLKESVLSQ 41 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~-~~~TV~~lK~~I~~~ 41 (117)
|.+|+.+.+...-+.|+ ...||.+||..|.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 56777787766656674 678999999999754
No 89
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=76.55 E-value=11 Score=23.10 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=29.5
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccc
Q 033531 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLG 72 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~ 72 (117)
.|+. +++....|..+||..+..+ ++ -+||+|-..+++..|.
T Consensus 6 N~k~---~~~~~~~tl~~lr~~~k~~------------~D-I~I~NGF~~~~d~~L~ 46 (57)
T PF14453_consen 6 NEKE---IETEENTTLFELRKESKPD------------AD-IVILNGFPTKEDIELK 46 (57)
T ss_pred CCEE---EEcCCCcCHHHHHHhhCCC------------CC-EEEEcCcccCCccccC
Confidence 5644 4678889999999998311 22 5699999988775553
No 90
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=73.06 E-value=12 Score=23.29 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=32.6
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~ 61 (117)
+.+|+++ .|.... +.+++..|-.+|+.+|....+ .+ ....+|=|.
T Consensus 2 ~~vK~~~-~~~~~~-~~~~~~~s~~dL~~~i~~~~~-----~~--~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY-GGETRR-LSVPRDISFEDLRSKVAKRFG-----LD--NQSFTLKYQ 46 (81)
T ss_pred ccEEEEE-CCEEEE-EEECCCCCHHHHHHHHHHHhC-----CC--CCCeEEEEE
Confidence 4567766 455555 899999999999999976643 22 356777776
No 91
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=71.79 E-value=2.2 Score=34.49 Aligned_cols=49 Identities=33% Similarity=0.508 Sum_probs=39.2
Q ss_pred CCCceeeeeecC-CCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcc
Q 033531 15 TDGSDIGPKSFP-AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTL 71 (117)
Q Consensus 15 ~~G~~~~~l~~~-~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL 71 (117)
.+|..+. +.+. -+..+..+|+++ .+...++ ++.|++.|.|.+|.|+.++
T Consensus 290 ~dg~~~~-~~~~~~~~~~~~~k~k~-----~~~~~i~--~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIK-ITVQSLSENVASLKEKI-----ADESQIP--ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceee-ecccccccccccccccc-----ccccccc--hhheeeccCCcccCccccc
Confidence 4677776 5665 677799999999 5666787 6999999999999998544
No 92
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=70.38 E-value=25 Score=30.61 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=44.1
Q ss_pred eeEEEEEeCCC--ceeeeeecCCCCcHHHHHHHhhhc-CCC-cccCCCCCCCceeEEe-c---Ce-ecCCCC--------
Q 033531 7 QLEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQ-WPK-EKENGPRTVKDVKLIS-A---GK-ILENNR-------- 69 (117)
Q Consensus 7 ~~~i~~~~~~G--~~~~~l~~~~~~TV~~lK~~I~~~-wp~-~~~~~p~~~~~qrLI~-~---Gk-~L~D~~-------- 69 (117)
++.|.+....+ ..+. +.+=..+||.++|+||... |.. .....|. ++++-|-+ . |+ +|.|.+
T Consensus 189 ~ltl~v~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavyk~~p~S~rp~-~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 189 TLTLNVVPQEEGSEEIP-VKVLDCDTITQVKEKILDAVYKNTPYSQRPR-ADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp EEEEEEECTTTSSTCEE-EEEETTSBHHHHHHHHHHHHTTTS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred EEEEEEEecCCCCceEE-EEEEecCcccHHHHHHHHHHHcCCCCCCCCC-ccccceeeecCCCCcccccCCCCCcccCCC
Confidence 45555544322 2344 7778999999999999853 110 0112332 56666633 2 33 676553
Q ss_pred -----cccccCCCCCCCCCCeEEEEEEeCC
Q 033531 70 -----TLGECRSPLCDIPGGVTTMHVVVQP 94 (117)
Q Consensus 70 -----tL~~~~i~~g~~~~~~~tmhlv~~~ 94 (117)
||+.|++++| .+|-|+.+.
T Consensus 267 wkrLNTL~HY~V~dg------a~vaLv~k~ 290 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDG------ATVALVPKQ 290 (539)
T ss_dssp EEE--BHHHHT--TT------EEEEEEES-
T ss_pred ceEeccHhhcCCCCC------ceEEEeecc
Confidence 4557899987 466666664
No 93
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=69.81 E-value=1.5 Score=35.47 Aligned_cols=46 Identities=30% Similarity=0.476 Sum_probs=0.0
Q ss_pred CCcHHHHHHHhhhc-CCCc----ccCCCCCCCcee-----EEecCeecCCCCcccccC
Q 033531 28 ATSVATLKESVLSQ-WPKE----KENGPRTVKDVK-----LISAGKILENNRTLGECR 75 (117)
Q Consensus 28 ~~TV~~lK~~I~~~-wp~~----~~~~p~~~~~qr-----LI~~Gk~L~D~~tL~~~~ 75 (117)
++||.++|+.+... .+.+ ..++| .+.+| |+|+-|.+.|++||.+..
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 68999999999751 0111 34566 58888 999999999999998753
No 94
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=68.67 E-value=22 Score=22.20 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=34.2
Q ss_pred eEEEEEeCCCc----eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE
Q 033531 8 LEIKFRLTDGS----DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI 59 (117)
Q Consensus 8 ~~i~~~~~~G~----~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI 59 (117)
-.|+|-..++. ... +.+++++|+.+|-+.+.++. +++.++..-.|.
T Consensus 3 ~~lrVy~~~~~~~~~~k~-i~v~~~tTa~evi~~~l~k~-----~l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKT-IKVSSSTTAREVIEMALEKF-----GLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEE-EEEETTSBHHHHHHHHHHHT-----TTSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEE-EEECCCCCHHHHHHHHHHHh-----CCCCCCCCEEEE
Confidence 45777777776 666 89999999999999997663 333446777774
No 95
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=67.66 E-value=31 Score=22.33 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=33.4
Q ss_pred CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe-cCeecCCCCcccccCCCCCC
Q 033531 17 GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-AGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 17 G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~-~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+..+. +.+++..||+++=+.+ |+| ...+.+|. +|+.-+= ++.+.+||
T Consensus 22 ~~~~~-~~~~~~~tvkd~IEsL---------GVP--~tEV~~i~vNG~~v~~-----~~~~~~Gd 69 (81)
T PF14451_consen 22 GGPFT-HPFDGGATVKDVIESL---------GVP--HTEVGLILVNGRPVDF-----DYRLKDGD 69 (81)
T ss_pred CCceE-EecCCCCcHHHHHHHc---------CCC--hHHeEEEEECCEECCC-----cccCCCCC
Confidence 34555 7889999999998887 788 46777654 6665543 26677776
No 96
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=66.08 E-value=6.8 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=26.1
Q ss_pred eEEecCeecCCCCcccccCCCCCCCCCCeEEEEEEeCCCCchh
Q 033531 57 KLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEK 99 (117)
Q Consensus 57 rLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv~~~~~~~~ 99 (117)
.|-|+||.|..+.+|.+| +..++ .+-+++-|..+-.+|++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE--KtKiivKl~~~g~g~P~ 42 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE--KTKIIVKLQKRGQGPPP 42 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc--ceeEEEEeccCCCCCCC
Confidence 478999999999999998 33233 22345555555555543
No 97
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=65.60 E-value=17 Score=24.03 Aligned_cols=63 Identities=10% Similarity=0.127 Sum_probs=42.8
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcC----CCcccCCCCCCCceeEEecCeecCCCCccccc
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQW----PKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~w----p~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 74 (117)
.+-|+|...+|.+.. +.+++++|+.++-+.++.+= ..+|.= .+..=-++.-|.++|-+.|-++
T Consensus 2 k~vvkv~~~Dg~sK~-l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~L----vE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 2 KQVVKVYSEDGASKS-LEVDERMTARDVCQLLVDKNHCQDDSSWTL----VEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred ceEEEEEecCCCeeE-EEEcCCCcHHHHHHHHHHHhCCCCCCCeEE----EEecchhhhhhhccchHHHHHH
Confidence 356888889999999 99999999999999887530 011110 1222234567788887776654
No 98
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=65.42 E-value=17 Score=23.00 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=35.9
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC--eecC
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE 66 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~ 66 (117)
+++.+.+|.... +.+-|+.||.++=+++.+. -++..+.-.+++...+ +.++
T Consensus 2 ~~V~LPng~~t~-V~vrpg~ti~d~L~~~c~k-----r~l~~~~~~v~~~~~~~~~~~~ 54 (72)
T cd01760 2 CRVYLPNGQRTV-VPVRPGMSVRDVLAKACKK-----RGLNPECCDVFLLGLDEKKPLD 54 (72)
T ss_pred EEEECcCCCeEE-EEECCCCCHHHHHHHHHHH-----cCCCHHHEEEEEecCCCcCCcC
Confidence 567789999888 8999999999999998755 2343223445555555 4554
No 99
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=62.95 E-value=9.3 Score=31.48 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=49.1
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC---eecC--CCCcccccCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---KILE--NNRTLGECRSPL 78 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G---k~L~--D~~tL~~~~i~~ 78 (117)
-+|.+|+.+|++.. ..|-.+++|..|-.-+..+ ..+-+ -...+|+++= |-|+ -+.||.++||..
T Consensus 278 t~i~vR~pdG~R~q-rkf~~sepv~ll~~~~~s~----~dg~~--k~~FkLv~a~P~~k~l~~~~daT~~eaGL~n 346 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQ-RKFLKSEPVQLLWSFCYSH----MDGSD--KKRFKLVQAIPASKTLDYGADATFKEAGLAN 346 (356)
T ss_pred eEEEEecCCccHHH-HhhccccHHHHHHHHHHHh----hcccc--cccceeeecccchhhhhccccchHHHhccCc
Confidence 35999999999988 8888899998887777654 23333 4788999988 6664 556999999984
No 100
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=61.36 E-value=46 Score=28.08 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=51.9
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe-cCeecCCCCcccccCCCCCCCCCCeE
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-AGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~-~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
.++++... .+.+. +-++.+..|++|=-.|.+.-.++..+ +..+..-.|-- .|..|+-+.||.+.++.+|+
T Consensus 3 ~RVtV~~~-~~~~D-laLPa~~PvaellP~ll~~~~~~~~~-~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~------ 73 (452)
T TIGR02958 3 CRVTVLAG-RRAVD-VALPADVPVAELIPDLVDLLDDRGAA-ELGAVRWALARAGGSPLDPDASLAEAGVRDGE------ 73 (452)
T ss_pred EEEEEeeC-Ceeee-eecCCCCcHHHHHHHHHHHhCccccc-CCCCcceEEecCCCCCCCCCCCHHHcCCCCCC------
Confidence 35555543 34566 88899999999888887653222111 11123444433 56799999999999999996
Q ss_pred EEEEEeCCCC
Q 033531 87 TMHVVVQPPS 96 (117)
Q Consensus 87 tmhlv~~~~~ 96 (117)
+++|......
T Consensus 74 ~L~L~p~~~~ 83 (452)
T TIGR02958 74 LLVLVPASAT 83 (452)
T ss_pred eEEEeeCCCC
Confidence 6777775444
No 101
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=55.80 E-value=49 Score=20.77 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=30.9
Q ss_pred CCceeeeeecCC-CCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 16 DGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G~~~~~l~~~~-~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.|... +++++ ..||.+|++.|.++.|. +... .....+++--+|+.-.++. .+.+||
T Consensus 14 ~g~~~--~~v~~~~~tv~~l~~~L~~~~~~-~~~~-~~~~~~~~aVN~~~~~~~~-----~l~dgD 70 (81)
T PRK11130 14 VGTDA--LELAADFPTVEALRQHLAQKGDR-WALA-LEDGKLLAAVNQTLVSFDH-----PLTDGD 70 (81)
T ss_pred hCCce--EEecCCCCCHHHHHHHHHHhCcc-HHhh-hcCCCEEEEECCEEcCCCC-----CCCCCC
Confidence 45432 44543 57999999999877653 2111 0124455555665544332 456665
No 102
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=55.19 E-value=26 Score=21.51 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=24.5
Q ss_pred EEEEEeCCCceeeeeecC-CCCcHHHHHHHhhhcCC
Q 033531 9 EIKFRLTDGSDIGPKSFP-AATSVATLKESVLSQWP 43 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~-~~~TV~~lK~~I~~~wp 43 (117)
.||++..++ ... +.++ .+.|..+|+.+|...++
T Consensus 2 ~vK~~~~~~-~~~-~~~~~~~~s~~~L~~~i~~~~~ 35 (81)
T cd05992 2 RVKVKYGGE-IRR-FVVVSRSISFEDLRSKIAEKFG 35 (81)
T ss_pred cEEEEecCC-CEE-EEEecCCCCHHHHHHHHHHHhC
Confidence 466666544 444 7888 99999999999987654
No 103
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=54.98 E-value=30 Score=24.43 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=34.5
Q ss_pred ecCC-CCcHHHHHHHhhhcCCCcccCCC---CCCCceeEEecC-----------------eec---CCCCcccccCCCC
Q 033531 24 SFPA-ATSVATLKESVLSQWPKEKENGP---RTVKDVKLISAG-----------------KIL---ENNRTLGECRSPL 78 (117)
Q Consensus 24 ~~~~-~~TV~~lK~~I~~~wp~~~~~~p---~~~~~qrLI~~G-----------------k~L---~D~~tL~~~~i~~ 78 (117)
.++. ++||.+|++.+...-+....-.| ...+.+|+++.. -+| +|+.||.++|+..
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~n 99 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVEN 99 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCc
Confidence 4665 89999999999865433221111 114556665542 366 6788888888874
No 104
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=54.61 E-value=51 Score=20.60 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=33.8
Q ss_pred EEEEeCC---CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--e----cCeecCCCC
Q 033531 10 IKFRLTD---GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--S----AGKILENNR 69 (117)
Q Consensus 10 i~~~~~~---G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~----~Gk~L~D~~ 69 (117)
|+|-..+ |.... +.+++++|..+|-+.+.++. ++..++..-.|+ + ..|.|+|++
T Consensus 2 ikV~~~~~~~~~~kt-i~V~~~~t~~~Vi~~~l~k~-----~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 2 LRVYPEDPSGGTYKT-LRVSKDTTAQDVIQQLLKKF-----GLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred EEEeCCcCCCccEEE-EEECCCCCHHHHHHHHHHHh-----CCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 4555545 55566 89999999999999887652 232224555553 2 335666554
No 105
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=53.65 E-value=43 Score=20.02 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+|+.+ +++...||.+|.+.+ +++ +..+.+.++|+++.-++ -.+..+.+||
T Consensus 4 Ng~~~---~~~~~~tv~~ll~~l---------~~~--~~~v~v~vN~~iv~~~~-~~~~~L~~gD 53 (64)
T TIGR01683 4 NGEPV---EVEDGLTLAALLESL---------GLD--PRRVAVAVNGEIVPRSE-WDDTILKEGD 53 (64)
T ss_pred CCeEE---EcCCCCcHHHHHHHc---------CCC--CCeEEEEECCEEcCHHH-cCceecCCCC
Confidence 56444 567888999999887 233 47788889999885221 1223466665
No 106
>KOG4261 consensus Talin [Cytoskeleton]
Probab=52.68 E-value=28 Score=31.95 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=42.7
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE------ecCeecCCCCcccccC
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI------SAGKILENNRTLGECR 75 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI------~~Gk~L~D~~tL~~~~ 75 (117)
.+++++-.. +...+ +.|+|+++|.+--..|++++|+...+ | ....|. -.|-+|+.+.||..|=
T Consensus 3 ~lsl~i~~~-~v~kt-mqfepst~vyda~~~ire~~~~~~~~-a---~~yglf~~de~~~k~~wle~grt~~~y~ 71 (1003)
T KOG4261|consen 3 ALSLKISSA-NVVKT-MQFEPSTLVYDACKVIREKFAEADVG-A---SEYGLFLSDEDPSKGIWLEAGRTLDYYM 71 (1003)
T ss_pred eeEEEEEec-ceeee-eeecCchHHHHHHHHHHHHhhhcccC-c---hhcceeeecCCcccceeecCCccHHHHH
Confidence 456666544 55666 89999999999999999888765554 3 233332 2355777777777653
No 107
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=52.42 E-value=24 Score=25.85 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=35.7
Q ss_pred eeEEEEEeCCCceeeeeecCC-CCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccccc
Q 033531 7 QLEIKFRLTDGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~-~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 74 (117)
.+.|++. -|+-+ ++++. .+.+..+++...+.+| .+ .+ |+-|+++....|++||
T Consensus 67 ~veL~V~--vGri~--lele~~~~~ie~I~~iCee~lp-----f~--y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 67 EVELTVK--VGRII--LELEDEEDVIEKIREICEEVLP-----FG--YD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEE--EeEEE--EEecCcHHHHHHHHHHHHHhCC-----Cc--eE----eeeeEEeccCCchhhh
Confidence 4455554 35444 67777 7788888877755544 22 22 4579999999999996
No 108
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=52.02 E-value=55 Score=21.26 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=27.2
Q ss_pred eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec
Q 033531 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61 (117)
Q Consensus 19 ~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~ 61 (117)
++. +.+.+..+..+|.++|.++.+ .+ ++..+|-|.
T Consensus 8 TVa-i~v~~g~~y~~L~~~ls~kL~-----l~--~~~~~LSY~ 42 (78)
T cd06411 8 TVA-LRAPRGADVSSLRALLSQALP-----QQ--AQRGQLSYR 42 (78)
T ss_pred EEE-EEccCCCCHHHHHHHHHHHhc-----CC--hhhcEEEec
Confidence 455 889999999999999987643 33 677888775
No 109
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=52.00 E-value=13 Score=24.03 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=16.2
Q ss_pred eecCCCCcHHHHHHHhhhc
Q 033531 23 KSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~ 41 (117)
++++.++|+.++|+.+|.+
T Consensus 4 l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 4 LRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEETT-BHHHHHHHHHHH
T ss_pred EEccCcCcHHHHHHHHHHH
Confidence 7888999999999999865
No 110
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=51.78 E-value=35 Score=25.03 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCCceeeeeecCCCC-cHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccccc
Q 033531 15 TDGSDIGPKSFPAAT-SVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (117)
Q Consensus 15 ~~G~~~~~l~~~~~~-TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 74 (117)
..|+.+ +++++.+ +++.+++...+.+|-+ .+ ++-|+++.+..|..||
T Consensus 81 kvGri~--~eie~e~~~~e~ie~ic~e~lPf~-------y~----v~vG~F~r~kpTVTDy 128 (165)
T COG4055 81 KVGRII--LEIEDEDETMEKIEEICDEMLPFG-------YE----VRVGKFTRRKPTVTDY 128 (165)
T ss_pred EeeEEE--EEecCcHhHHHHHHHHHHHhCCCc-------ee----eeeeeeeccCCcchhh
Confidence 456555 6777765 8888877775554432 22 4679999999999986
No 111
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=51.74 E-value=50 Score=19.66 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=26.5
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecC
Q 033531 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE 66 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~ 66 (117)
+|+.+ ++++..||.+|=+.+ +++ ...+-+.++|.++.
T Consensus 6 NG~~~---~~~~~~tl~~lL~~l---------~~~--~~~vav~vNg~iv~ 42 (66)
T PRK05659 6 NGEPR---ELPDGESVAALLARE---------GLA--GRRVAVEVNGEIVP 42 (66)
T ss_pred CCeEE---EcCCCCCHHHHHHhc---------CCC--CCeEEEEECCeEeC
Confidence 67544 667888998887665 343 46777888998776
No 112
>smart00455 RBD Raf-like Ras-binding domain.
Probab=49.00 E-value=63 Score=20.10 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=36.8
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC--eecC
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE 66 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~ 66 (117)
.++.+.+|+... +.+-|+.||.++=+++.+. -++. ++...+...| +.|+
T Consensus 2 ~~v~LP~~~~~~-V~vrpg~tl~e~L~~~~~k-----r~l~--~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTV-VKVRPGKTVRDALAKALKK-----RGLN--PECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEE-EEECCCCCHHHHHHHHHHH-----cCCC--HHHEEEEEcCCCccee
Confidence 467788999998 8999999999999998765 3443 5666666645 4554
No 113
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=48.20 E-value=31 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=24.1
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCC
Q 033531 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWP 43 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp 43 (117)
.||+.+ .|-.+. +.++++.+..+|++.|....+
T Consensus 2 ~vK~~~-~~d~~r-~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 2 RVKATY-GEEKIR-FRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred EEEEEe-CCeEEE-EEcCCCCCHHHHHHHHHHHhC
Confidence 344433 444555 899999999999999976643
No 114
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=47.00 E-value=86 Score=21.01 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=41.8
Q ss_pred eeEEEEEeCC-CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCC-ceeEEecCe--ecCCCCcccccC
Q 033531 7 QLEIKFRLTD-GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVK-DVKLISAGK--ILENNRTLGECR 75 (117)
Q Consensus 7 ~~~i~~~~~~-G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~-~qrLI~~Gk--~L~D~~tL~~~~ 75 (117)
.+.|.+.... ...+. +.++++.|+.+|.+.+..++ ....+....++ +--|==.|| .|-.+..|.++.
T Consensus 17 ~i~v~i~~~~~~~~~t-~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~ 87 (108)
T smart00144 17 KILIVVHLEKDQQTKT-LKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFE 87 (108)
T ss_pred eEEEEEEEccCceeEE-EEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechH
Confidence 4555555543 34566 88999999999999888764 22222222122 455544566 677777777764
No 115
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=46.55 E-value=20 Score=23.25 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=17.2
Q ss_pred eecCCCCcHHHHHHHhhhc
Q 033531 23 KSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~ 41 (117)
+.++.+.|+.++|+.++++
T Consensus 4 l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 4 LRVLREATLSTIKHELFKQ 22 (78)
T ss_pred EEccccccHHHHHHHHHHH
Confidence 7889999999999999865
No 116
>PF00894 Luteo_coat: Luteovirus coat protein; InterPro: IPR001517 Barley yellow dwarf virus (BYDV) can be separated into two groups based on serological relationships, presumably governed by the viral capsid structure []. Coding regions of coat proteins have been identified for the MAV-PS1, P-PAV (group 1) and NY-RPV (group 2) isolates of BYDV. Group 1 proteins show 71% sequence similarity to each other, 51% similarity to those of group 2, and a high degree of similarity to those from other luteoviruses (including coat proteins from Beet western yellows virus (BWYV) [] and Potato leafroll virus (PLrV) [, ]). Among luteovirus coat protein sequences in general, several highly conserved domains can be identified, while other domains differentiate group 1 isolates from group 2 and other luteoviruses. Sequence comparisons between the genomes of PLrV, BWYV and BYDV have revealed ~65% protein sequence similarity between the capsid proteins of BWYV and PLrV and ~45% similarity between BYDV and PLrV []. The N-terminal regions of these sequences, like those of many plant virus capsid proteins, is highly basic. These regions may be involved in protein-RNA interaction.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=45.55 E-value=58 Score=23.39 Aligned_cols=55 Identities=13% Similarity=0.271 Sum_probs=35.6
Q ss_pred eEEEEEeC----CCceeeeeecCCCCcHHHHHHHhhh---------cCCCcccC----CCCCCCceeEEecCe
Q 033531 8 LEIKFRLT----DGSDIGPKSFPAATSVATLKESVLS---------QWPKEKEN----GPRTVKDVKLISAGK 63 (117)
Q Consensus 8 ~~i~~~~~----~G~~~~~l~~~~~~TV~~lK~~I~~---------~wp~~~~~----~p~~~~~qrLI~~Gk 63 (117)
+.|.|+.- +...+. +|+||..+...|.-.|.. .||+..-+ .+.+.+|.||+|.|-
T Consensus 46 v~v~f~SeAsstt~GsIa-yElD~~ck~s~l~S~in~f~I~k~g~ksf~a~~InG~~w~~ss~dQF~iLYKgN 117 (138)
T PF00894_consen 46 VKVEFISEASSTTSGSIA-YELDPHCKQSTLGSYINKFSITKNGSKSFPAKQINGKEWHDSSEDQFRILYKGN 117 (138)
T ss_pred EEEEEEeecccCCCccEE-EEecCccchhhhhheeeeEeeecccccccchhccCCccccccCcceEEEEEecC
Confidence 44555542 233455 899999999999887742 35543221 234578999999984
No 117
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=45.37 E-value=1.1e+02 Score=26.29 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=44.6
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec----Ce--ecCCCCcccccCCCCCC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA----GK--ILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~----Gk--~L~D~~tL~~~~i~~g~ 80 (117)
+.++||-..|..- .++.++++.+.|-.+|....-.. .+++++-+--+ |- -+..++|+.++|+..|+
T Consensus 1 Mi~rfRsk~G~~R--ve~qe~d~lg~l~~kll~~~~~n-----~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGq 72 (571)
T COG5100 1 MIFRFRSKEGQRR--VEVQESDVLGMLSPKLLAFFEVN-----YSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQ 72 (571)
T ss_pred CeEEEecCCCcee--eeccccchhhhhhHHHHhhhccC-----CCccceEEEeCCCCCceeeecccccChhhhccccCc
Confidence 3578888888766 69999999999999997653211 22344444321 22 14456799999999884
No 118
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=44.41 E-value=12 Score=24.40 Aligned_cols=12 Identities=25% Similarity=1.016 Sum_probs=9.6
Q ss_pred CCCCCCeeEeeC
Q 033531 106 QPKQNKCVCVIL 117 (117)
Q Consensus 106 ~~~~~~c~c~i~ 117 (117)
....++|+|++|
T Consensus 101 pp~h~nCRC~~i 112 (112)
T PF04233_consen 101 PPEHPNCRCTVI 112 (112)
T ss_pred CCCCCCCeeeeC
Confidence 346889999886
No 119
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.16 E-value=32 Score=27.58 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=30.8
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033531 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
..-+|.||+.+|.++. .+|++..|...|+.-|..+
T Consensus 209 s~crlQiRl~DG~Tl~-~tF~a~E~L~~VR~wVd~n 243 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLT-QTFNARETLAAVRLWVDLN 243 (290)
T ss_pred cceEEEEEcCCCCeee-eecCchhhHHHHHHHHHHh
Confidence 3567889999999999 8999999999999999654
No 120
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=43.71 E-value=39 Score=24.64 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=36.6
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccccc
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 74 (117)
.+.|++. -|+-+ +++...+.+.++++...+.+| .+ .+ |.-|+++.+..|++||
T Consensus 66 ~veL~V~--VGrI~--le~~~~~~i~~I~eiC~e~~p-----F~--y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 66 DVELRVQ--VGRII--LELEDEDIVEEIEEICKEMLP-----FG--YE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEE--EeEEE--EEecCHHHHHHHHHHHHhhCC-----Cc--eE----eeeeeEeecCCchhhh
Confidence 4555554 35444 677788888999888866554 22 22 5679999999999996
No 121
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=43.40 E-value=54 Score=27.33 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=45.2
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCC--CcccccCCCCCC
Q 033531 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN--RTLGECRSPLCD 80 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~--~tL~~~~i~~g~ 80 (117)
+|..-+...+.+. +.+...-...+++..++.. .+++ .+..-|||+++.|.+. +.|..+|+..++
T Consensus 4 tvs~~l~~~~~~~-i~v~~dg~L~nl~aL~~~d-----~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 4 TVSVALNFEKKFP-IPVTTDGELNNLAALCWKD-----TGIV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred EEEEEecceeeec-cccccccchhhHHHHHHHH-----hCcc--cchhhcccCCCccccchhhhhhhcccccce
Confidence 3333333444454 7888888888999888543 3455 5788899999999754 688899988775
No 122
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=42.43 E-value=71 Score=19.58 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=24.0
Q ss_pred eeEEEEEeCCCceeeeeecC---CCCcHHHHHHHh
Q 033531 7 QLEIKFRLTDGSDIGPKSFP---AATSVATLKESV 38 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~---~~~TV~~lK~~I 38 (117)
++++.|+..+|+... +.++ ++.|-+++|...
T Consensus 2 tL~l~F~~~~gk~~t-i~i~~pk~~lt~~~V~~~m 35 (69)
T PF11148_consen 2 TLELVFKTEDGKTFT-ISIPNPKEDLTEAEVKAAM 35 (69)
T ss_pred EEEEEEEcCCCCEEE-EEcCCCCCCCCHHHHHHHH
Confidence 588999999999998 7774 566667776554
No 123
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=41.70 E-value=27 Score=19.38 Aligned_cols=13 Identities=8% Similarity=0.373 Sum_probs=11.5
Q ss_pred CCceeEEecCeec
Q 033531 53 VKDVKLISAGKIL 65 (117)
Q Consensus 53 ~~~qrLI~~Gk~L 65 (117)
..++.++|+|++.
T Consensus 5 ~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 5 TAQLTIFYGGQVC 17 (36)
T ss_pred CCcEEEEECCEEE
Confidence 6799999999976
No 124
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=41.40 E-value=70 Score=28.90 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=36.8
Q ss_pred eCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecC
Q 033531 14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE 66 (117)
Q Consensus 14 ~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~ 66 (117)
+.++..++ +.++++.|+..+++.|..+ .|+| .+.|-|+|.|....
T Consensus 321 ~~~~~~~~-~~~~~~ntl~~~~~~I~~~-----Tgip--e~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 321 MVQATSHE-YYVHADNTLHSLIERISKQ-----TGIP--EGKQELLFEGGLSH 365 (732)
T ss_pred eccceEEE-EecChhhhHHHHHHHHHHh-----hCCC--CccceeeeecCccc
Confidence 45777777 8999999999999999644 6787 58899999988544
No 125
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=39.61 E-value=80 Score=23.68 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=27.5
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCC-CCCceeE--EecCee---cCCCCccccc
Q 033531 23 KSFPAATSVATLKESVLSQWPKEKENGPR-TVKDVKL--ISAGKI---LENNRTLGEC 74 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~-~~~~qrL--I~~Gk~---L~D~~tL~~~ 74 (117)
+-++.+.||.+|-+.+..+. +.+. +...+|| +++||+ +..+.+|++.
T Consensus 38 ~~vpk~~tV~Dll~~l~~k~-----~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 38 LLVPKTGTVSDLLEELQKKV-----GFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp E--BTT-BHHHHHHHHHTT---------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEECCCCCHHHHHHHHHHHc-----CCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 77899999999999997652 2221 1457777 778885 5667777655
No 126
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=38.58 E-value=87 Score=18.66 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=31.0
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+|+.+. + + ..|+.+|.+.+ +++ +..+.+-.+|+++.- ....+..+.+||
T Consensus 6 Ng~~~~-~--~-~~tl~~Ll~~l---------~~~--~~~vavavN~~iv~~-~~~~~~~L~dgD 54 (65)
T PRK06488 6 NGETLQ-T--E-ATTLALLLAEL---------DYE--GNWLATAVNGELVHK-EARAQFVLHEGD 54 (65)
T ss_pred CCeEEE-c--C-cCcHHHHHHHc---------CCC--CCeEEEEECCEEcCH-HHcCccccCCCC
Confidence 676665 4 4 46899998876 232 356778889998862 222334566665
No 127
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=36.74 E-value=34 Score=24.82 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=37.2
Q ss_pred CCcHHHHHHHhhhcCCCccc-C---------------CCCCCCceeEEecCe-ecCCCCcccccCCCCCCCCCCeEEEEE
Q 033531 28 ATSVATLKESVLSQWPKEKE-N---------------GPRTVKDVKLISAGK-ILENNRTLGECRSPLCDIPGGVTTMHV 90 (117)
Q Consensus 28 ~~TV~~lK~~I~~~wp~~~~-~---------------~p~~~~~qrLI~~Gk-~L~D~~tL~~~~i~~g~~~~~~~tmhl 90 (117)
+.|..+|-..|.+.-|+... + .+. ...+=-.+.|+ ..+|++||.+++++-|| -+.+
T Consensus 61 datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y~-~RevG~t~~g~Kg~ddnktL~~~kf~iGD------~lDV 133 (151)
T KOG3391|consen 61 DATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRYI-VREVGTTCLGRKGIDDNKTLQQTKFEIGD------YLDV 133 (151)
T ss_pred hhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCce-eeeecccccCcccCCccchhhhCCccccc------eEEE
Confidence 46788888888765443321 0 010 12222344566 56899999999999887 3455
Q ss_pred EeCCCC
Q 033531 91 VVQPPS 96 (117)
Q Consensus 91 v~~~~~ 96 (117)
.+.++.
T Consensus 134 aI~~p~ 139 (151)
T KOG3391|consen 134 AITPPN 139 (151)
T ss_pred EecCcc
Confidence 555443
No 128
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=36.63 E-value=89 Score=25.74 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=32.1
Q ss_pred EEEEeCCCceeeeeecC-CCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCe
Q 033531 10 IKFRLTDGSDIGPKSFP-AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK 63 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~-~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk 63 (117)
|.+|+.+.++..-+.|+ -..+|-+||..|-.+- .-+-- .+-+=|||+|.
T Consensus 5 I~YrFkSqkn~SRI~FdGTGl~vfdlKrEII~q~---Klg~g--~DFdLl~yn~~ 54 (427)
T COG5222 5 INYRFKSQKNFSRISFDGTGLPVFDLKREIINQR---KLGSG--KDFDLLFYNGE 54 (427)
T ss_pred eEEEeeccCCcceeEeccCCccHHHHHHHHHHhh---hccCC--ccceEEEecCC
Confidence 77788888877656775 5689999999886431 11111 24555677775
No 129
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=34.87 E-value=1e+02 Score=20.25 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=40.4
Q ss_pred ceeEEEEEeC-CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCe--ecCCCCcccccC
Q 033531 6 DQLEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK--ILENNRTLGECR 75 (117)
Q Consensus 6 ~~~~i~~~~~-~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk--~L~D~~tL~~~~ 75 (117)
..+.|.+.+. ++..+. +.++.+.|+.+|-+.+..++- ..-..+...++--|==.|+ .|..+..|.+|.
T Consensus 15 ~~i~v~v~~~~~~~~~t-~~~~~~~t~~~li~~~l~k~~-~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFT-FQVDPNSTPEELIAQALKKKL-KDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SEEEEEEEETTCSEEEE-EEEETTS-HHHHHHHHHHHHH-HHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CeEEEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHHHH-hhcCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 3677777777 455676 999999999999988876621 1111111112444533455 677777888774
No 130
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=34.41 E-value=1.1e+02 Score=18.59 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=36.4
Q ss_pred eEEEEEeCCCc-ee--eeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCC
Q 033531 8 LEIKFRLTDGS-DI--GPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILEN 67 (117)
Q Consensus 8 ~~i~~~~~~G~-~~--~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D 67 (117)
|.|+|.+..|. .. .++.++.+.|..+|-+.|.+-.+.+.+ +-...++..|..|.+
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~-----~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEE-----PVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCC-----CCcEEEEECCEEeec
Confidence 67888887773 11 148999999999998777554322222 235567777777754
No 131
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=32.31 E-value=1.3e+02 Score=18.67 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=37.4
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccc
Q 033531 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLG 72 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~ 72 (117)
.+++.+.+|+... +.+-|+.||.++=.++.+. -++..+.-.+++.-..+.|+.++...
T Consensus 2 ~~~v~LP~~q~t~-V~vrpg~ti~d~L~~~~~k-----r~L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 2 TCRVHLPNGQRTV-VQVRPGMTIRDALSKACKK-----RGLNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEEETTTEEEE-EEE-TTSBHHHHHHHHHHT-----TT--CCCEEEEEEEEEEEE-TTSBGG
T ss_pred eEEEECCCCCEEE-EEEcCCCCHHHHHHHHHHH-----cCCCHHHEEEEEcCCCccccCCCcee
Confidence 3678889999888 8999999999998888754 23432233444444666777555443
No 132
>PF14191 YodL: YodL-like
Probab=31.93 E-value=1e+02 Score=20.86 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe
Q 033531 27 AATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60 (117)
Q Consensus 27 ~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~ 60 (117)
++.+..+|-++....-|++..|-+.|++.+-.|+
T Consensus 48 ~~~~Le~iy~~FN~~~P~df~GhsLSvSDVV~l~ 81 (103)
T PF14191_consen 48 HTETLEDIYERFNVDHPEDFKGHSLSVSDVVELY 81 (103)
T ss_pred CCCCHHHHHHHhCcCCCCCCCCCccChheEEEEE
Confidence 3444444444444433444444333344444333
No 133
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=31.66 E-value=92 Score=20.66 Aligned_cols=34 Identities=9% Similarity=0.297 Sum_probs=29.7
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
++.|++-+.+|.++. +++--+++..+|=+.+.++
T Consensus 1 ~V~L~V~Lpdg~~i~-V~v~~s~~a~~Vleav~~k 34 (87)
T cd01777 1 DVELRIALPDKATVT-VRVRKNATTDQVYQALVAK 34 (87)
T ss_pred CeEEEEEccCCCEEE-EEEEEcccHHHHHHHHHHH
Confidence 468899999999999 8999999999998888654
No 134
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=31.06 E-value=1.3e+02 Score=25.92 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=43.9
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecC---CCCcccccCCCC
Q 033531 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE---NNRTLGECRSPL 78 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~---D~~tL~~~~i~~ 78 (117)
-+.++|.||+.+|.++. -.|+.+.-...+|+.++..-.-+...+ .+---|=-|... -.++|.++.+-.
T Consensus 312 ~d~~rLqiRLPdGssft-e~Fps~~vL~~vr~yvrq~~~i~~g~f-----~LatpyPRReft~eDy~KtllEl~L~p 382 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFT-EKFPSTSVLRMVRDYVRQNQTIGLGAF-----DLATPYPRREFTDEDYDKTLLELRLFP 382 (506)
T ss_pred cceeEEEEecCCccchh-hcCCcchHHHHHHHHHHhcccccccce-----eeccccccccccchhhhhhHHHhccCC
Confidence 47899999999999998 688888888899998874321111111 111123334442 235888888863
No 135
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=31.03 E-value=1.3e+02 Score=19.61 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=22.8
Q ss_pred EEEEEeCCCceeeeeecCC--CCcHHHHHHHhhhc
Q 033531 9 EIKFRLTDGSDIGPKSFPA--ATSVATLKESVLSQ 41 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~--~~TV~~lK~~I~~~ 41 (117)
+||+.. .|..+. +.+++ +.|-.+|++.|...
T Consensus 2 ~vKaty-~~d~~r-f~~~~~~~~~~~~L~~ev~~r 34 (81)
T cd06396 2 NLKVTY-NGESQS-FLVSDSENTTWASVEAMVKVS 34 (81)
T ss_pred EEEEEE-CCeEEE-EEecCCCCCCHHHHHHHHHHH
Confidence 455544 555666 88988 77999999999755
No 136
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=30.79 E-value=1.6e+02 Score=19.37 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=24.5
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcC
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQW 42 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~w 42 (117)
+.||+.. .|-.+. +.++++.+-.+|.++|....
T Consensus 3 ikVKv~~-~~Dv~~-i~v~~~i~f~dL~~kIrdkf 35 (86)
T cd06408 3 IRVKVHA-QDDTRY-IMIGPDTGFADFEDKIRDKF 35 (86)
T ss_pred EEEEEEe-cCcEEE-EEcCCCCCHHHHHHHHHHHh
Confidence 4444443 455666 89999999999999997653
No 137
>PRK07440 hypothetical protein; Provisional
Probab=28.36 E-value=1.5e+02 Score=18.26 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=31.9
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+|+.+ ++++..||.+|=+.+ +++ +..+-+-++|+++.-+ .-++..+.+||
T Consensus 10 NG~~~---~~~~~~tl~~lL~~l---------~~~--~~~vav~~N~~iv~r~-~w~~~~L~~gD 59 (70)
T PRK07440 10 NGETR---TCSSGTSLPDLLQQL---------GFN--PRLVAVEYNGEILHRQ-FWEQTQVQPGD 59 (70)
T ss_pred CCEEE---EcCCCCCHHHHHHHc---------CCC--CCeEEEEECCEEeCHH-HcCceecCCCC
Confidence 67654 667888999887665 232 5778888899988621 12223455565
No 138
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=28.30 E-value=1e+02 Score=24.75 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.0
Q ss_pred eecCCCCcHHHHHHHhhhcC---CCccc-----CCCCCCCceeEEecCeecCCCCcccccC
Q 033531 23 KSFPAATSVATLKESVLSQW---PKEKE-----NGPRTVKDVKLISAGKILENNRTLGECR 75 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~w---p~~~~-----~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 75 (117)
|....-.-|.-+++.|.++. |+... ..+...+.+-|+|+|++|+.+-||+..+
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 44455566778888887776 22222 1112268999999999999999999876
No 139
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=26.82 E-value=1.4e+02 Score=18.62 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=24.0
Q ss_pred EEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCC
Q 033531 11 KFRLTDGSDIGPKSFPAATSVATLKESVLSQWPK 44 (117)
Q Consensus 11 ~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~ 44 (117)
.|+. +|.++. .-+|+.++.++|..-+..||+
T Consensus 9 ~F~~-~g~~L~--DP~p~~spe~V~~~ya~~YPe 39 (65)
T PF14454_consen 9 VFRY-NGITLP--DPNPSLSPEEVRDFYAAQYPE 39 (65)
T ss_pred EEEE-CCEECC--CCCCCCCHHHHHHHHhhhChh
Confidence 4444 776664 458999999999999998884
No 140
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=26.49 E-value=1e+02 Score=22.74 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=26.5
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHH
Q 033531 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKES 37 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~ 37 (117)
+.|.|+|...+|..+. +.....+||.++=..
T Consensus 42 e~i~Itfv~~dG~~~~-i~g~vGdtlLd~ah~ 72 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEIK-IKGKVGDTLLDAAHE 72 (159)
T ss_pred ceEEEEEECCCCCEEE-eeeecchHHHHHHHH
Confidence 3599999999999998 899999999887443
No 141
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=26.47 E-value=3.6e+02 Score=22.10 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=25.5
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecC
Q 033531 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE 66 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~ 66 (117)
+|+.+ ++++..||.+|=+.+ +++ .+.+-+.++|+++.
T Consensus 6 NGk~~---el~e~~TL~dLL~~L---------~i~--~~~VAVeVNgeIVp 42 (326)
T PRK11840 6 NGEPR---QVPAGLTIAALLAEL---------GLA--PKKVAVERNLEIVP 42 (326)
T ss_pred CCEEE---ecCCCCcHHHHHHHc---------CCC--CCeEEEEECCEECC
Confidence 67544 567888988887765 233 46777777887775
No 142
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=25.62 E-value=1.7e+02 Score=18.96 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=20.7
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHH
Q 033531 8 LEIKFRLTDGSDIGPKSFPAATSVATLK 35 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK 35 (117)
.+|+|+...|.... +.++++.|+.+.=
T Consensus 3 ~~v~~~~~~~~~~~-~~~~~g~tLLda~ 29 (97)
T TIGR02008 3 YKVTLVNPDGGEET-IECPDDQYILDAA 29 (97)
T ss_pred EEEEEEECCCCEEE-EEECCCCcHHHHH
Confidence 45666667887777 8889999988763
No 143
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=23.88 E-value=1.7e+02 Score=17.48 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=32.1
Q ss_pred CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 15 ~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.+|+.+ ++++..||.+|-+.+. .. ...+.+-.+|+++.-+ .-++..+.+||
T Consensus 5 vNg~~~---~~~~~~tl~~ll~~l~---------~~--~~~vaVavN~~iv~r~-~w~~~~L~~gD 55 (66)
T PRK08053 5 FNDQPM---QCAAGQTVHELLEQLN---------QL--QPGAALAINQQIIPRE-QWAQHIVQDGD 55 (66)
T ss_pred ECCeEE---EcCCCCCHHHHHHHcC---------CC--CCcEEEEECCEEeChH-HcCccccCCCC
Confidence 367555 5678889999988762 21 3568888999988621 11223456665
No 144
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=23.47 E-value=1.7e+02 Score=20.89 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=24.6
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHH
Q 033531 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATL 34 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~l 34 (117)
..++.|+|...+|...+ +++++..|+.+.
T Consensus 33 ~g~v~I~~~~~dG~~~~-v~~~~G~sLLea 61 (143)
T PTZ00490 33 PGKVKVCVKKRDGTHCD-VEVPVGMSLMHA 61 (143)
T ss_pred CCcEEEEEEcCCCCEEE-EEECCCccHHHH
Confidence 34889999988999888 899999998874
No 145
>PRK01777 hypothetical protein; Validated
Probab=23.24 E-value=2.3e+02 Score=18.72 Aligned_cols=50 Identities=6% Similarity=-0.097 Sum_probs=28.6
Q ss_pred eeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 22 PKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 22 ~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.+++++++||.++=..+ .++.+...+. .+.-.+.-.||...-+. .+.+||
T Consensus 20 ~l~vp~GtTv~dal~~s--gi~~~~pei~--~~~~~vgI~Gk~v~~d~-----~L~dGD 69 (95)
T PRK01777 20 RLTLQEGATVEEAIRAS--GLLELRTDID--LAKNKVGIYSRPAKLTD-----VLRDGD 69 (95)
T ss_pred EEEcCCCCcHHHHHHHc--CCCccCcccc--cccceEEEeCeECCCCC-----cCCCCC
Confidence 38889999999886665 2322221221 12245555677665443 456776
No 146
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=22.74 E-value=44 Score=19.30 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=13.2
Q ss_pred CCCcccCCCCCCCceeEEecCeecC
Q 033531 42 WPKEKENGPRTVKDVKLISAGKILE 66 (117)
Q Consensus 42 wp~~~~~~p~~~~~qrLI~~Gk~L~ 66 (117)
+|..|.. =..||.|.|..|+
T Consensus 3 LP~~w~~-----l~F~~~~rg~~l~ 22 (54)
T PF03633_consen 3 LPKQWSS-----LSFRLRYRGHWLE 22 (54)
T ss_dssp --TT-SE-----EEEEEEETTEEEE
T ss_pred CCCccCE-----eEEEEEECCEEEE
Confidence 4666654 3789999999885
No 147
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.76 E-value=53 Score=28.40 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCCceeEEEEEeCCCceee-eeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCC
Q 033531 3 SVQDQLEIKFRLTDGSDIG-PKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPL 78 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~-~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~ 78 (117)
.|.+++.|+.....+...- .+.-.-..|-.+|...|+++ -+++. +.+|.|-+||+|.-.+||++-|+..
T Consensus 33 TGlat~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakk-----lgi~e--nhvKci~~~Kils~~ktlaeQglk~ 102 (568)
T KOG2561|consen 33 TGLATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKK-----LGIKE--NHVKCIINGKILSCRKTLAEQGLKI 102 (568)
T ss_pred cCccceeeEeccccccchhhhhhcccccccHHHHHHHHHH-----cCCch--hhhheeeccceeecccchhhhhhhh
Confidence 3556666666554333221 02223445677899999765 36764 5999999999999999999988764
No 148
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=21.63 E-value=2e+02 Score=17.26 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=33.0
Q ss_pred CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033531 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 15 ~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.+|... ++++..|+.+|=+.+ +++ ...+-+.++|.++.-++- +.+ +++||
T Consensus 5 vNG~~~---~~~~~~tl~~ll~~l---------~~~--~~~vav~~N~~iv~r~~~-~~~-L~~gD 54 (65)
T PRK05863 5 VNEEQV---EVDEQTTVAALLDSL---------GFP--EKGIAVAVDWSVLPRSDW-ATK-LRDGA 54 (65)
T ss_pred ECCEEE---EcCCCCcHHHHHHHc---------CCC--CCcEEEEECCcCcChhHh-hhh-cCCCC
Confidence 366544 566788888876665 344 578899999998863322 223 67776
No 149
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=21.28 E-value=1.9e+02 Score=17.09 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=22.4
Q ss_pred EEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033531 10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 10 i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
|++.+.+|... +++...|+.++=..|...
T Consensus 1 I~v~lpdG~~~---~~~~g~T~~d~A~~I~~~ 29 (60)
T PF02824_consen 1 IRVYLPDGSIK---ELPEGSTVLDVAYSIHSS 29 (60)
T ss_dssp EEEEETTSCEE---EEETTBBHHHHHHHHSHH
T ss_pred CEEECCCCCee---eCCCCCCHHHHHHHHCHH
Confidence 56677888765 467889999999999644
No 150
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=21.00 E-value=2.8e+02 Score=21.72 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=40.7
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecC
Q 033531 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE 66 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~ 66 (117)
++++.|.|-|+..+|.-++ +-+|=..-|.-+|..|..+ .|. |. ...|-|-|.-|+-+
T Consensus 23 ~~~d~itlef~~~DGtlit-~~~Df~~~v~i~kalilge--~e~-gq---s~yq~~cf~~~~~~ 79 (240)
T PF14941_consen 23 SEEDTITLEFQRSDGTLIT-QLADFKQEVQIFKALILGE--EER-GQ---SQYQALCFVTKLQK 79 (240)
T ss_pred CCCceEEEEEEcCCCcEEe-eehhhhhHHHHHHHHHcCh--hhh-cc---CcceeEEEEEeecc
Confidence 5678899999999998888 7778888899999999644 222 22 24566666555433
No 151
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=20.39 E-value=1.4e+02 Score=20.72 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHhhhcCCCccc-C--------CCCC------CCceeEEecCee-cCCCCcccccCCCCCC
Q 033531 27 AATSVATLKESVLSQWPKEKE-N--------GPRT------VKDVKLISAGKI-LENNRTLGECRSPLCD 80 (117)
Q Consensus 27 ~~~TV~~lK~~I~~~wp~~~~-~--------~p~~------~~~qrLI~~Gk~-L~D~~tL~~~~i~~g~ 80 (117)
.+.|..+|=..|...-|.... + .|.. ...+--++.|+- -+|++||+++++.-||
T Consensus 45 ~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 45 MDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred ccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCC
Confidence 678888888877654332221 0 0110 112333555554 4789999999998887
No 152
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.20 E-value=1.2e+02 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.347 Sum_probs=35.7
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCC
Q 033531 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPL 78 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~ 78 (117)
+..+.+.+.....+..+.+..+++| .+.+.|| +|+ |.|.+|.+++++.+-|+..
T Consensus 198 ~f~~~l~l~Gs~~l~~~P~g~~t~v-----~l~S~W~--------~PS-----F~G~fLP~~r~i~~~GF~A 251 (430)
T PF06123_consen 198 PFSFSLQLNGSESLSFVPLGKTTEV-----TLKSDWP--------HPS-----FTGAFLPEEREITDSGFSA 251 (430)
T ss_pred eEEEEEEecCcCcEEEEecCcccEE-----EEEcCCc--------CCC-----CCCccCCCCCccCCCCcee
Confidence 3455555555445543445555444 4667786 255 9999999999999888764
Done!