BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033532
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 149 bits (375), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 81/102 (79%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP +YP PP ++F
Sbjct: 14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFI 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
SE+WHPN+ +G VCISILH PGDD GYE ERW PVHTV
Sbjct: 74 SEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTV 115
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 81/102 (79%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F
Sbjct: 28 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 87
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+E+WHPNV +G VCISILH PG+D GYE ERW P+HTV
Sbjct: 88 TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTV 129
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 77/102 (75%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 14 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +V
Sbjct: 74 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 115
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 77/102 (75%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 17 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +V
Sbjct: 77 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 118
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 77/102 (75%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 18 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 77
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +V
Sbjct: 78 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 119
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 77/102 (75%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 20 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 79
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +V
Sbjct: 80 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 121
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 71/101 (70%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L + PV+GF LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP RF +
Sbjct: 19 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 78
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+MWHPN+Y G VCISILHPP DDP EL +ERW P V
Sbjct: 79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV 119
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 71/101 (70%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L + PV+GF LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP RF +
Sbjct: 16 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 75
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+MWHPN+Y G VCISILHPP DDP EL +ERW P V
Sbjct: 76 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV 116
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 71/102 (69%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L K+ G AG E+N+F W I GPPDT Y G FNA + FP +YP+SPP + FT
Sbjct: 15 QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFT 74
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+ HPN+YP+G+VCISILH PGDDPN YELA ERW+PV +V
Sbjct: 75 PSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSV 116
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 27 AGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD 86
+G E+N+ +W+ I GP T +E G F ++ F + YP PPTVRF S+M+HPNVY D
Sbjct: 25 SGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYAD 84
Query: 87 GKVCISILHPPGDDPNGYELATERWTPVHTV 117
G +C+ IL RW+P + V
Sbjct: 85 GSICLDILQ-------------NRWSPTYDV 102
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 14/101 (13%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G ++N+ W+ I GP DT ++GG F + F ++YP PPTVRF S
Sbjct: 16 LQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
M+HPN+Y DG +C+ IL +W+P++ V
Sbjct: 75 RMFHPNIYADGSICLDILQ-------------NQWSPIYDV 102
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
NV W+ IIGP DT YE G F ++ F + YP PP V+F SEM+HPNVY +G++C+ I
Sbjct: 32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDI 91
Query: 94 LHPPGDDPNGYELATERWTPVHTV 117
L RWTP + V
Sbjct: 92 LQ-------------NRWTPTYDV 102
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 30 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 88
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
++++HPN+ +G +C+ IL +W+P TV
Sbjct: 89 TKIYHPNINSNGSICLDILR-------------SQWSPALTV 117
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 14 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
++++HPN+ +G +C+ IL +W+P TV
Sbjct: 73 TKIYHPNINSNGSICLDILR-------------SQWSPALTV 101
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 18 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
++++HPN+ +G +C+ IL +W+P TV
Sbjct: 77 TKIYHPNINSNGSICLDILR-------------SQWSPALTV 105
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G E N+ W I GP +T +E G F + F + YP PPTV+F S
Sbjct: 16 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 74
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+M+HPNVY DG +C+ IL RW+P + V
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDV 102
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G E N+ W I GP +T +E G F + F + YP PPTV+F S
Sbjct: 19 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 77
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+M+HPNVY DG +C+ IL RW+P + V
Sbjct: 78 KMFHPNVYADGSICLDILQ-------------NRWSPTYDV 105
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
++ W V I G P T +EGG + M FP+ YP PP RFT ++HPNVYP G VC+SI
Sbjct: 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 94 LH 95
L+
Sbjct: 103 LN 104
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 73.9 bits (180), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+ ++HPN+ +G + + IL +W+P T+
Sbjct: 73 TRIYHPNINSNGSISLDILR-------------SQWSPALTI 101
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPP++ Y+GG F + FP +YP PP V FT
Sbjct: 15 DLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 74 TRIYHPNINSNGSICLDILR 93
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K+P SAG V + ++F W +I+GP D+ Y GG F + FP +YP PP V FT
Sbjct: 12 DLGKDPPSSSSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+ ++HPN+ +G +C+ IL ++W+P T+
Sbjct: 71 TRIYHPNINSNGSICLDILR-------------DQWSPALTI 99
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 17 DLQRDPPAQCSAGPVGD-DLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
++++HPN+ +G +C+ IL +W+P TV
Sbjct: 76 TKIYHPNINSNGSICLDILR-------------SQWSPALTV 104
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K+P SAG V + ++F W +I+GP D+ Y GG F + FP +YP PP V FT
Sbjct: 32 DLSKDPPTNCSAGPVGD-DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFT 90
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
++++HPN+ G +C+ IL ++W+P T+
Sbjct: 91 TKIYHPNINSQGAICLDIL-------------KDQWSPALTI 119
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 30 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 89 TRIYHPNINSNGSICLDILR 108
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 17 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 76 TRIYHPNINSNGSICLDILR 95
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 22 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 81 TRIYHPNINSNGSICLDILR 100
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b,
Wild-Type
Length = 149
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 73 TRIYHPNINSNGSICLDILR 92
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+ ++HPN+ +G +C+ IL +W+P T+
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTI 101
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 20 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 78
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+ ++HPN+ +G +C+ IL +W+P T+
Sbjct: 79 TRIYHPNINSNGSICLDILR-------------SQWSPALTI 107
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating
Enzyme Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 71 TRIYHPNINSNGSICLDILR 90
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 22 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+ ++HPN+ +G +C+ IL +W+P T+
Sbjct: 81 TRIYHPNINSNGSICLDILR-------------SQWSPALTI 109
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 73 TRIYHPNINSNGSICLDILR 92
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 70 TRIYHPNINSNGSICLDILR 89
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 73 TRIYHPNINSNGSICLDILR 92
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ L
Sbjct: 73 TRIYHPNINSNGSICLDALR 92
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W + +GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G +C+ IL
Sbjct: 73 TRIYHPNINSNGSICLDILR 92
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + +++ W SI+GP D+ Y GG F + FP +YP PP + FT
Sbjct: 13 DLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFT 71
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
++++HPN+ +G +C+ IL ++W+P T+
Sbjct: 72 TKIYHPNINANGNICLDILK-------------DQWSPALTL 100
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P AG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 18 DLQRDPPAHCRAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
++++HPN+ +G + + IL +W+P TV
Sbjct: 77 TKIYHPNINSNGSIKLDILR-------------SQWSPALTV 105
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
D N+F+W ++ GP DT+YE + + FP +YP PP V+FT+ WHPNV G +C
Sbjct: 34 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93
Query: 91 ISILH 95
+ IL
Sbjct: 94 LDILK 98
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 15 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G + + IL
Sbjct: 74 TRIYHPNINSNGSISLDILR 93
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G + + IL
Sbjct: 70 TRIYHPNINSNGSISLDILR 89
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94 LHPPGD 99
L D
Sbjct: 99 LEEDKD 104
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 94 LHPPGD 99
L D
Sbjct: 98 LEEDKD 103
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94 LHPPGD 99
L D
Sbjct: 99 LEEDKD 104
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G + + IL
Sbjct: 71 TRIYHPNINSNGSISLDILR 90
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 94 LHPPGD 99
L D
Sbjct: 97 LEEDKD 102
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 94 LHPPGD 99
L D
Sbjct: 102 LEEDKD 107
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 30 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HPN+ +G + + IL
Sbjct: 89 TRIYHPNINSNGSIXLDILR 108
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD-GK 88
+ +SN FEW I GP T YEGG F +T P++YP +PP ++F +++WHPN+ G
Sbjct: 47 IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA 106
Query: 89 VCISILH 95
+C+ +L
Sbjct: 107 ICLDVLK 113
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 13 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 71
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPNV G++C+ IL
Sbjct: 72 KIYHPNVDKLGRICLDILK 90
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPNV G++C+ IL
Sbjct: 74 KIYHPNVDKLGRICLDILK 92
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 17 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 75
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPNV G++C+ IL
Sbjct: 76 KIYHPNVDKLGRICLDILK 94
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 20 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 78
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPNV G++C+ IL
Sbjct: 79 KIYHPNVDKLGRICLDILK 97
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 18 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 76
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPNV G++C+ IL
Sbjct: 77 KIYHPNVDKLGRICLDILK 95
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HP VYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 84 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142
Query: 88 KVCISILH 95
+C+ IL
Sbjct: 143 AICLDILK 150
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 48 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 106
Query: 88 KVCISILH 95
+C+ IL
Sbjct: 107 AICLDILK 114
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 35 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 93
Query: 88 KVCISILH 95
+C+ IL
Sbjct: 94 AICLDILK 101
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNV P G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 94 LHPPGD 99
L D
Sbjct: 100 LEEDKD 105
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23 DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
+ LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN
Sbjct: 26 NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84
Query: 83 VYP-DGKVCISILH 95
+ G +C+ IL
Sbjct: 85 ISSVTGAICLDILK 98
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23 DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
+ LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN
Sbjct: 27 NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 85
Query: 83 VYP-DGKVCISILH 95
+ G +C+ IL
Sbjct: 86 ISSVTGAICLDILK 99
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N++EW +I+GPP ++YEGG F +TF +YP PP V F + ++H N+ G +C+ I
Sbjct: 31 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 94 LH 95
L
Sbjct: 91 LK 92
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 94 LHPPGD 99
L D
Sbjct: 97 LEEDKD 102
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P AG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCRAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILH 95
+ ++HP + +G + + IL
Sbjct: 71 TRIYHPAINSNGSISLDILR 90
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N++EW +I+GPP ++YEGG F +TF YP PP V F + ++H N+ G +C+ I
Sbjct: 76 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 94 LH 95
L
Sbjct: 136 LK 137
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 94 LHPPGD 99
L D
Sbjct: 97 LEEDKD 102
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPN+ G++C+ +L
Sbjct: 74 KIYHPNIDRLGRICLDVLK 92
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 17 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 75
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPN+ G++C+ +L
Sbjct: 76 KIYHPNIDRLGRICLDVLK 94
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
++ ++P SAG V + ++F W+ +I GP D+ Y+GG F + FP +YP P V F
Sbjct: 15 EIQQDPPCNCSAGPVGD-DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFM 73
Query: 76 SEMWHPNVYPDGKVCISILH 95
++++HPN+ +G +C+ IL
Sbjct: 74 TKVYHPNINKNGVICLDILK 93
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 24 GFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
GF A V +++ + +W I G T + GG + + +P+ YP PP V+F + +
Sbjct: 23 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82
Query: 80 HPNVYPDGKVCISILHPPGD 99
HPNVYP G +C+SIL+ D
Sbjct: 83 HPNVYPSGTICLSILNEDQD 102
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L P G A V E N +++ I GP T YEGG + + P+ YP+ PP VRF
Sbjct: 12 NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76 SEMWHPNVYPDGKVCISIL 94
++++HPN+ G++C+ IL
Sbjct: 71 TKIYHPNIDKLGRICLDIL 89
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 24 GFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
GF A V +++ + +W I G T + GG + + +P+ YP PP V+F + +
Sbjct: 25 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 84
Query: 80 HPNVYPDGKVCISILHPPGD 99
HPNVYP G +C+SIL+ D
Sbjct: 85 HPNVYPSGTICLSILNEDQD 104
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L P G A V E N +++ I GP T YEGG + + P+ YP+ PP VRF
Sbjct: 12 NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76 SEMWHPNVYPDGKVCISIL 94
++++HPN+ G++C+ IL
Sbjct: 71 TKIYHPNIDKLGRICLDIL 89
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 15/88 (17%)
Query: 32 ESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW--HPNVYPDGKV 89
++++ +W V + G P TLYEG F + F YP P V FT E HP+VY +G +
Sbjct: 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI 109
Query: 90 CISILHPPGDDPNGYELATERWTPVHTV 117
C+SIL TE W+P +V
Sbjct: 110 CLSIL-------------TEDWSPALSV 124
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HPN+ G++ + +L
Sbjct: 74 KIYHPNIDRLGRISLDVLK 92
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 24 GFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83
G SA +V ++ W I GP T YEGG F + P +YP +PP ++F +++WHPN+
Sbjct: 64 GVSAQIVG-GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNI 122
Query: 84 YPD-GKVCISIL 94
G +C+ IL
Sbjct: 123 SSQTGAICLDIL 134
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 16/99 (16%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRF-TS 76
NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP + F +
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV 114
+ H NV G++C++IL P E WTPV
Sbjct: 90 NILHSNVKSATGEICLNILKP------------EEWTPV 116
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
D+ + + I+G +T YE G F + P+ YP PP +RF + ++HPN+ G++C
Sbjct: 29 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRIC 88
Query: 91 ISILHPP 97
+ +L P
Sbjct: 89 LDVLKLP 95
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K P D++NV W +++ P Y FN ++FP YP PP ++FT
Sbjct: 15 DLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 73
Query: 76 SEMWHPNVYPDGKVCISIL 94
++++HPNV +G++C+ I+
Sbjct: 74 TKIYHPNVDENGQICLPII 92
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K P D++NV W +++ P Y FN ++FP YP PP ++FT
Sbjct: 12 DLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 70
Query: 76 SEMWHPNVYPDGKVCISIL 94
++++HPNV +G++C+ I+
Sbjct: 71 TKIYHPNVDENGQICLPII 89
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
+++HP + G++ + +L
Sbjct: 74 KIYHPAIDRLGRISLDVLK 92
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function
In Ubiquitin-Protein Ligases
Length = 154
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
++ K + F VDE+N+ W +I P + Y+ G F + FP YP PP + F
Sbjct: 13 EIRKCGMKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFK 71
Query: 76 SEMWHPNVYPDGKVCISIL 94
++++HPN+ G+VC+ ++
Sbjct: 72 TKIYHPNIDEKGQVCLPVI 90
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
++ K + F VDE+N+ W +I P + Y+ G F + FP YP PP + F
Sbjct: 15 EIRKCGMKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFK 73
Query: 76 SEMWHPNVYPDGKVCISIL 94
++++HPN+ G+VC+ ++
Sbjct: 74 TKIYHPNIDEKGQVCLPVI 92
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 16/99 (16%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRF-TS 76
NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP + F +
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV 114
+ H NV G++C++IL P E WTPV
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPV 116
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 16/99 (16%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRF-TS 76
NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP + F +
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV 114
+ H NV G++C++IL P E WTPV
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPV 116
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +P DG +E ++ + V+I GP T Y GG F + ++P SPP F +
Sbjct: 25 LTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 83
Query: 77 EMWHPNVYPDGKVCISIL 94
+++HPNV +G++C+++L
Sbjct: 84 KIFHPNVGANGEICVNVL 101
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 20 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
+P + V ES++ + +GPP T YEGG F + P YP PP ++F ++++
Sbjct: 16 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 75
Query: 80 HPNVYP-DGKVCISIL 94
HPN+ G +C+ IL
Sbjct: 76 HPNISSVTGAICLDIL 91
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH-----PNVYP 85
DE + V I GP DT Y G F + FP +YP SPP V + H PN+Y
Sbjct: 105 DEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
Query: 86 DGKVCISILHPPGDDPNGYELATERWTP 113
DGKVC+SIL+ P E+W P
Sbjct: 165 DGKVCLSILNTWHGRPE------EKWNP 186
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGK 88
V SN+ W V +G +T+Y + + FPDNYP+ PP V F + H +VY +G
Sbjct: 44 VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGD 103
Query: 89 VCISILHPPGDDPN 102
+C+S+L GDD N
Sbjct: 104 ICLSVL---GDDYN 114
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating
Enzyme, Ubc1
Length = 215
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 20 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
+P + V ES++ + +GPP T YEGG F + P YP PP ++F ++++
Sbjct: 17 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 76
Query: 80 HPNVYP-DGKVCISILH 95
HPN+ G +C+ IL
Sbjct: 77 HPNISSVTGAICLDILR 93
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 43 IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
+ P + Y+GG F PD Y + PP V+ +++WHPN+ G++C+S+L D
Sbjct: 51 VTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGT 110
Query: 103 GYELATERWTPVHTV 117
G W P T+
Sbjct: 111 G-------WAPTRTL 118
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 43 IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
+ P + Y+GG F PD Y + PP V+ +++WHPN+ G++C+S+L D
Sbjct: 51 VTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGT 110
Query: 103 GYELATERWTPVHTV 117
G W P T+
Sbjct: 111 G-------WAPTRTL 118
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
+ N+F+W +I G T+YE + + FP YP + PTV+F + +HPNV G +
Sbjct: 55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNIS 114
Query: 91 ISILHPPGDDPNGYELATERWTPVHTV 117
+ IL E+W+ ++ V
Sbjct: 115 LDILK-------------EKWSALYDV 128
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL +N G +A V E ++ EW V I G +++++G F + F Y +PP V+F
Sbjct: 34 DLKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFI 92
Query: 76 SEMWHPNVYPD-GKVCISILHPPGDDPNGYELAT 108
+ +HPNV P G+ CI L P Y L++
Sbjct: 93 TIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSS 126
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGK 88
V +N+ W V +G +T+Y + + FPD+YP+ PP V F + H +VY +G
Sbjct: 30 VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD 89
Query: 89 VCISILHPPGDDPN 102
+C+S+L GDD N
Sbjct: 90 ICLSLL---GDDYN 100
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
D K + G+ L + + ++ V GP T YEGG + +T PD+YP + P++ F
Sbjct: 10 DFTKLIMAGYDLEL-NNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFM 68
Query: 76 SEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+++ HPNV G VC+ +++ + WTP++++
Sbjct: 69 NKLLHPNVDEASGSVCLDVIN-------------QTWTPLYSL 98
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77
N +G S GL D+ + WS +I G P T++E ++ + DNYP SPPTV+F ++
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 78 MWHPNVYPDGKVCISILHPPGDDPNGYELAT 108
+ V G+V + LH + Y + T
Sbjct: 97 IEMSCVDNCGRVIKNNLHILKNWNRNYTIET 127
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77
N +G S GL D+ + WS +I G P T++E ++ + DNYP SPPTV+F ++
Sbjct: 41 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 78 MWHPNVYPDGKVCISILHPPGDDPNGYELAT 108
+ V G+V + LH + Y + T
Sbjct: 101 IEMSCVDNCGRVIKNNLHILKNWNRNYTIET 131
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 37 EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILH 95
E+ V GP T YEGG + + PD YP P++ F ++++HPN+ G VC+ +++
Sbjct: 52 EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN 111
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 30 VDESNVFEWSVSIIGPPDTLY--EGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87
VD ++ W + + P D++Y G + + F D+YP PPTVRF + ++ P V +G
Sbjct: 44 VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEG 103
Query: 88 KVCISILH 95
+C +++
Sbjct: 104 GICDRMVN 111
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 33 SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN--VYPDGKVC 90
SN+ EW + GP T YEGG+++ + FP +P PP++ M PN + ++C
Sbjct: 41 SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY----MITPNGRFKCNTRLC 96
Query: 91 ISI--LHP 96
+SI HP
Sbjct: 97 LSITDFHP 104
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
+I P + Y+ G F YP PP V+ + ++HPN+ +G VC++IL
Sbjct: 40 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILR------ 93
Query: 102 NGYELATERWTPVHTV 117
E W PV T+
Sbjct: 94 -------EDWKPVLTI 102
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILH 95
I+ P + Y G N + F + YP+ PP V +++HPN+ G VC++IL
Sbjct: 69 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR 122
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 35 VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISI 93
V E+ V GP T YE G + + P +YP P++ F + + HPNV G VC+ +
Sbjct: 37 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDV 96
Query: 94 LHPPGDDPNGYELATERWTPVHTV 117
++ + WTP++ +
Sbjct: 97 IN-------------QTWTPMYQL 107
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 23 DGFSAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80
+ S GL D ++ +W+ +I+GPP + +E ++ + NYP SPP V F S++
Sbjct: 25 ESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 84
Query: 81 PNVYPDGKVCISILHPPGDDPNGYELAT 108
P V P + H D Y + T
Sbjct: 85 PCVNPTTGEVQTDFHTLRDWKRAYTMET 112
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 23 DGFSAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80
+ S GL D ++ +W+ +I+GPP + +E ++ + NYP SPP V F S++
Sbjct: 24 ESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 83
Query: 81 PNVYPDGKVCISILHPPGDDPNGYELAT 108
P V P + H D Y + T
Sbjct: 84 PCVNPTTGEVQTDFHTLRDWKRAYTMET 111
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
+I P + Y+ G F YP PP V+ + ++HPN+ +G V ++IL
Sbjct: 60 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR------ 113
Query: 102 NGYELATERWTPVHTV 117
E W PV T+
Sbjct: 114 -------EDWKPVLTI 122
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T+YE ++ + YP +PP VRF +++
Sbjct: 57 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T+YE ++ + YP +PP VRF +++
Sbjct: 47 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 27 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 81
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 26 SWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 80
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ I+GPP T+YE ++ + YP +PP VRF +++
Sbjct: 29 SWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 83
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 25 FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 31 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 86
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 25 FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 36 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 91
>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548
Length = 413
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 92 SILHPPGDDPNGYELATERWTPVHT 116
S+++ PG++P GY L+ E W V T
Sbjct: 182 SLINSPGNNPTGYSLSDEEWDEVIT 206
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 60 TFPDNYPVSPPTVRFTSEMWHPN-VYPDGKVCISILHPPG 98
+F DN+P PP VR S + V G +C+ +L G
Sbjct: 75 SFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQG 114
>pdb|3H5L|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
pdb|3H5L|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
Length = 419
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 38 WSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPP 70
W PP+TLY GGF + DN S P
Sbjct: 131 WGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRP 163
>pdb|1QHK|A Chain A, N-Terminal Domain Of Saccharomyces Cerevisiae Rnase Hi
Reveals A Fold With A Resemblance To The N-Terminal
Domain Of Ribosomal Protein L9
Length = 47
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 18 CKNPVDGFSAGLVDESNVFEWSVSIIG 44
CKN VDG+ + + N +E + S +G
Sbjct: 21 CKNQVDGYGGAIYKKFNSYEQAKSFLG 47
>pdb|4JA0|A Chain A, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|B Chain B, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|C Chain C, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|D Chain D, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
Length = 425
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 64 NYPV---SPPTVRFTSEMWHPNVYPDGKVCISILHP 96
+YPV PP+ + ++W P G C ++++P
Sbjct: 345 SYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYP 380
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
D +++F+ + +G P Y GGFF I T
Sbjct: 336 DRADIFKQEAAQVGLPXLPYRGGFFITIPT 365
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 60 TFPDNYPVSPPTVRFTSEMWHPN-VYPDGKVCISILHPPG 98
+F DN+P PP VR + V G +C+ +L G
Sbjct: 96 SFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQG 135
>pdb|3S05|A Chain A, Meos2 Fluorescent Protein-Green Form
pdb|3S05|B Chain B, Meos2 Fluorescent Protein-Green Form
pdb|3S05|C Chain C, Meos2 Fluorescent Protein-Green Form
pdb|3S05|D Chain D, Meos2 Fluorescent Protein-Green Form
Length = 224
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGG-FFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83
+ S FE I D EG F+N + + N+P + P ++ + W P+
Sbjct: 88 ERSLTFEDGGICIARNDITMEGDTFYNKVRFYGTNFPANGPVMQKKTLKWEPST 141
>pdb|3VK7|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing 5- Hydroxyuracil
pdb|3VK7|B Chain B, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing 5- Hydroxyuracil
pdb|3VK8|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing Thymine Glycol
pdb|3VK8|B Chain B, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing Thymine Glycol
Length = 295
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 79 WHPNVYPDGKVCISILHPPGDDPNGYELATER 110
+HPN++P K +++ DPNG ++ ++
Sbjct: 237 YHPNIHPTEKEFDFLVYRKKKDPNGNKVIADK 268
>pdb|3A45|A Chain A, Crystal Structure Of Mvnei1_2
pdb|3A45|B Chain B, Crystal Structure Of Mvnei1_2
pdb|3A46|A Chain A, Crystal Structure Of Mvnei1/thf Complex
pdb|3A46|B Chain B, Crystal Structure Of Mvnei1/thf Complex
Length = 289
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 79 WHPNVYPDGKVCISILHPPGDDPNGYELATER 110
+HPN++P K +++ DPNG ++ ++
Sbjct: 237 YHPNIHPTEKEFDFLVYRKKKDPNGNKVIADK 268
>pdb|3A42|A Chain A, Crystal Structure Of Mvnei1
Length = 295
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 79 WHPNVYPDGKVCISILHPPGDDPNGYELATER 110
+HPN++P K +++ DPNG ++ ++
Sbjct: 237 YHPNIHPTEKEFDFLVYRKKKDPNGNKVIADK 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.140 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,214,009
Number of Sequences: 62578
Number of extensions: 182984
Number of successful extensions: 427
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 137
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)