Query 033533
Match_columns 117
No_of_seqs 146 out of 397
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 99.7 4.2E-17 9.1E-22 132.6 4.1 74 6-103 206-280 (281)
2 cd03031 GRX_GRX_like Glutaredo 99.6 9.6E-17 2.1E-21 119.7 2.6 71 6-99 75-147 (147)
3 PLN03165 chaperone protein dna 98.9 5E-09 1.1E-13 75.6 5.7 58 51-108 39-98 (111)
4 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.8 7.1E-09 1.5E-13 67.4 5.0 51 56-106 1-66 (66)
5 COG0484 DnaJ DnaJ-class molecu 98.7 1.3E-08 2.8E-13 86.0 3.8 57 51-107 140-208 (371)
6 PRK14279 chaperone protein Dna 98.4 5.5E-07 1.2E-11 75.7 5.3 58 51-108 171-238 (392)
7 PRK14286 chaperone protein Dna 98.3 7.4E-07 1.6E-11 74.4 5.0 58 51-108 148-215 (372)
8 PRK14301 chaperone protein Dna 98.3 8.5E-07 1.8E-11 74.1 4.6 58 51-108 142-209 (373)
9 PRK14285 chaperone protein Dna 98.3 9.7E-07 2.1E-11 73.6 4.9 58 51-108 144-211 (365)
10 PRK10767 chaperone protein Dna 98.3 1.4E-06 3E-11 72.5 5.2 58 51-108 140-207 (371)
11 PRK14284 chaperone protein Dna 98.2 1.2E-06 2.6E-11 73.5 4.7 58 51-108 156-223 (391)
12 PRK14298 chaperone protein Dna 98.2 1.3E-06 2.7E-11 73.3 4.7 58 51-108 139-210 (377)
13 PRK14300 chaperone protein Dna 98.2 1.6E-06 3.5E-11 72.3 5.3 58 51-108 143-210 (372)
14 PRK14295 chaperone protein Dna 98.2 1.2E-06 2.6E-11 73.6 4.5 57 51-107 164-230 (389)
15 PRK14288 chaperone protein Dna 98.2 2E-06 4.2E-11 71.9 5.1 58 51-108 138-204 (369)
16 PRK14294 chaperone protein Dna 98.2 2.2E-06 4.7E-11 71.3 5.1 58 51-108 142-209 (366)
17 PRK14296 chaperone protein Dna 98.2 2.1E-06 4.5E-11 71.8 4.8 58 51-108 147-218 (372)
18 PRK14278 chaperone protein Dna 98.2 2.4E-06 5.2E-11 71.5 5.2 58 51-108 137-208 (378)
19 PRK14282 chaperone protein Dna 98.2 3.1E-06 6.7E-11 70.5 5.3 57 51-107 150-220 (369)
20 PRK14291 chaperone protein Dna 98.2 2.7E-06 5.8E-11 71.3 4.9 58 51-108 154-220 (382)
21 PRK14289 chaperone protein Dna 98.1 2.4E-06 5.3E-11 71.4 4.5 58 51-108 152-223 (386)
22 TIGR02349 DnaJ_bact chaperone 98.1 3.2E-06 7E-11 69.7 4.9 58 51-108 141-212 (354)
23 PRK14276 chaperone protein Dna 98.1 4.2E-06 9.1E-11 70.0 4.9 58 51-108 144-215 (380)
24 PRK14280 chaperone protein Dna 98.1 4.7E-06 1E-10 69.6 5.1 58 51-108 141-212 (376)
25 PRK14277 chaperone protein Dna 98.1 5E-06 1.1E-10 69.7 4.9 58 51-108 153-224 (386)
26 PRK14287 chaperone protein Dna 98.1 5E-06 1.1E-10 69.5 4.7 58 51-108 136-207 (371)
27 PRK14290 chaperone protein Dna 98.0 7.3E-06 1.6E-10 68.2 5.4 58 51-108 147-217 (365)
28 PRK14281 chaperone protein Dna 98.0 6.7E-06 1.5E-10 69.3 4.7 58 51-108 161-231 (397)
29 PRK14293 chaperone protein Dna 98.0 8.4E-06 1.8E-10 68.0 4.8 58 51-108 141-212 (374)
30 PTZ00037 DnaJ_C chaperone prot 98.0 8.5E-06 1.8E-10 69.6 4.9 58 51-108 148-220 (421)
31 PRK14297 chaperone protein Dna 98.0 9.8E-06 2.1E-10 67.8 5.0 57 51-107 146-216 (380)
32 PRK14283 chaperone protein Dna 97.9 1.1E-05 2.4E-10 67.4 4.7 58 51-108 144-215 (378)
33 KOG2813 Predicted molecular ch 97.9 5E-06 1.1E-10 70.2 2.4 54 54-107 188-267 (406)
34 PRK14292 chaperone protein Dna 97.8 3E-05 6.5E-10 64.5 4.2 57 51-107 137-208 (371)
35 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.7 3.6E-05 7.7E-10 50.0 3.0 39 51-95 13-66 (66)
36 COG1107 Archaea-specific RecJ- 97.4 0.00013 2.7E-09 65.7 3.7 24 54-77 3-31 (715)
37 COG0484 DnaJ DnaJ-class molecu 97.3 0.00022 4.9E-09 60.6 3.5 40 52-98 158-210 (371)
38 KOG0712 Molecular chaperone (D 97.1 0.00054 1.2E-08 57.7 3.7 56 51-106 125-196 (337)
39 COG1107 Archaea-specific RecJ- 97.0 0.0005 1.1E-08 61.9 3.3 55 52-113 17-96 (715)
40 PRK14296 chaperone protein Dna 96.9 0.00078 1.7E-08 56.5 3.4 39 53-98 166-219 (372)
41 PRK14300 chaperone protein Dna 96.8 0.0011 2.3E-08 55.5 3.3 38 53-97 162-210 (372)
42 PRK14298 chaperone protein Dna 96.8 0.00098 2.1E-08 56.0 3.1 39 53-98 158-211 (377)
43 PRK14279 chaperone protein Dna 96.8 0.0012 2.5E-08 55.8 3.5 39 53-98 190-239 (392)
44 PRK14285 chaperone protein Dna 96.8 0.0011 2.3E-08 55.5 3.2 39 53-98 163-212 (365)
45 PRK14288 chaperone protein Dna 96.8 0.0013 2.9E-08 55.0 3.7 38 53-97 156-204 (369)
46 PRK14280 chaperone protein Dna 96.8 0.0012 2.7E-08 55.3 3.4 39 53-98 160-213 (376)
47 PRK14286 chaperone protein Dna 96.8 0.0012 2.5E-08 55.4 3.3 38 54-98 168-216 (372)
48 PRK10767 chaperone protein Dna 96.7 0.0012 2.7E-08 54.9 3.2 39 53-98 159-208 (371)
49 PRK14282 chaperone protein Dna 96.7 0.0016 3.5E-08 54.3 3.6 39 53-98 169-222 (369)
50 PRK14278 chaperone protein Dna 96.7 0.0015 3.2E-08 54.8 3.4 39 53-98 156-209 (378)
51 PRK14301 chaperone protein Dna 96.7 0.0013 2.8E-08 55.1 2.9 39 53-98 161-210 (373)
52 PRK14284 chaperone protein Dna 96.7 0.0013 2.8E-08 55.4 2.7 38 53-97 175-223 (391)
53 PTZ00037 DnaJ_C chaperone prot 96.6 0.0019 4.2E-08 55.3 3.7 42 52-98 165-221 (421)
54 PRK14276 chaperone protein Dna 96.6 0.0016 3.4E-08 54.7 3.1 39 53-98 163-216 (380)
55 PRK14297 chaperone protein Dna 96.5 0.0021 4.6E-08 53.8 3.2 39 53-98 165-218 (380)
56 TIGR02349 DnaJ_bact chaperone 96.5 0.0023 5E-08 52.8 3.1 39 53-98 160-213 (354)
57 PRK14294 chaperone protein Dna 96.5 0.0023 5E-08 53.4 3.1 39 53-98 161-210 (366)
58 PRK14290 chaperone protein Dna 96.5 0.0028 6.1E-08 52.8 3.6 40 52-98 164-218 (365)
59 PRK14295 chaperone protein Dna 96.5 0.0026 5.6E-08 53.7 3.3 39 53-98 183-232 (389)
60 PRK14277 chaperone protein Dna 96.5 0.0024 5.3E-08 53.6 3.2 39 53-98 172-225 (386)
61 PRK14281 chaperone protein Dna 96.4 0.0027 6E-08 53.6 3.4 40 52-98 178-232 (397)
62 PRK14289 chaperone protein Dna 96.4 0.0025 5.4E-08 53.4 3.1 40 52-98 170-224 (386)
63 PLN03165 chaperone protein dna 96.3 0.0047 1E-07 44.6 3.6 34 54-97 53-98 (111)
64 TIGR02642 phage_xxxx uncharact 96.2 0.0034 7.3E-08 48.9 2.3 27 52-78 98-129 (186)
65 PRK14293 chaperone protein Dna 96.2 0.0043 9.4E-08 51.9 3.0 38 53-97 160-212 (374)
66 PRK14287 chaperone protein Dna 96.1 0.0045 9.7E-08 51.9 3.0 39 53-98 155-208 (371)
67 PRK14292 chaperone protein Dna 96.0 0.0058 1.3E-07 50.9 3.2 39 53-98 157-210 (371)
68 PRK14291 chaperone protein Dna 96.0 0.0074 1.6E-07 50.7 3.6 37 53-97 173-220 (382)
69 PRK14283 chaperone protein Dna 95.8 0.0075 1.6E-07 50.5 3.0 39 53-98 163-216 (378)
70 KOG2813 Predicted molecular ch 95.6 0.0058 1.3E-07 52.0 1.6 37 52-98 233-269 (406)
71 TIGR02642 phage_xxxx uncharact 95.4 0.013 2.8E-07 45.7 2.9 30 64-98 99-128 (186)
72 KOG0712 Molecular chaperone (D 91.0 0.15 3.2E-06 43.2 2.1 41 53-98 143-199 (337)
73 KOG0715 Molecular chaperone (D 87.3 0.3 6.5E-06 40.0 1.3 55 51-106 162-227 (288)
74 PF07092 DUF1356: Protein of u 81.4 0.76 1.6E-05 37.3 1.2 29 52-80 26-54 (238)
75 PF14354 Lar_restr_allev: Rest 80.8 1.7 3.7E-05 26.9 2.5 28 65-93 4-37 (61)
76 TIGR03655 anti_R_Lar restricti 79.0 2.7 5.9E-05 25.9 2.9 32 65-96 2-37 (53)
77 TIGR00630 uvra excinuclease AB 77.5 1.8 3.9E-05 40.9 2.5 30 67-96 739-770 (924)
78 PF13719 zinc_ribbon_5: zinc-r 76.1 1.9 4.2E-05 24.9 1.5 29 65-93 3-33 (37)
79 KOG2824 Glutaredoxin-related p 72.9 3.5 7.5E-05 34.4 2.8 27 86-112 230-256 (281)
80 PRK00349 uvrA excinuclease ABC 71.2 2.9 6.3E-05 39.6 2.2 31 66-96 740-772 (943)
81 cd03031 GRX_GRX_like Glutaredo 67.1 3.9 8.5E-05 30.5 1.8 23 86-108 100-122 (147)
82 PF03589 Antiterm: Antitermina 65.5 2.9 6.2E-05 29.2 0.8 33 66-98 7-45 (95)
83 PRK09710 lar restriction allev 65.2 8.7 0.00019 25.5 2.9 31 65-95 7-37 (64)
84 TIGR00630 uvra excinuclease AB 63.0 4.8 0.0001 38.1 2.0 24 53-76 736-771 (924)
85 COG0178 UvrA Excinuclease ATPa 62.6 5.1 0.00011 38.1 2.0 22 54-75 731-764 (935)
86 PF13901 DUF4206: Domain of un 62.1 3.4 7.4E-05 32.0 0.7 40 52-93 141-180 (202)
87 COG0178 UvrA Excinuclease ATPa 62.0 6.7 0.00015 37.4 2.7 31 66-96 732-764 (935)
88 PF14353 CpXC: CpXC protein 61.3 11 0.00023 26.7 3.1 33 65-97 2-50 (128)
89 PF07295 DUF1451: Protein of u 59.5 8.3 0.00018 28.9 2.4 36 60-98 108-143 (146)
90 TIGR02098 MJ0042_CXXC MJ0042 f 59.5 8.1 0.00018 21.8 1.8 29 65-93 3-33 (38)
91 PF04216 FdhE: Protein involve 58.9 9.3 0.0002 30.8 2.7 43 61-110 194-252 (290)
92 PF13717 zinc_ribbon_4: zinc-r 58.3 7.1 0.00015 22.5 1.4 29 65-93 3-33 (36)
93 PF15616 TerY-C: TerY-C metal 57.6 15 0.00032 27.4 3.4 39 54-97 78-117 (131)
94 PRK00349 uvrA excinuclease ABC 57.2 5.9 0.00013 37.6 1.5 21 86-106 739-771 (943)
95 PRK00635 excinuclease ABC subu 56.8 7.8 0.00017 39.4 2.3 12 53-64 1607-1618(1809)
96 PRK03564 formate dehydrogenase 54.4 15 0.00033 30.8 3.3 14 99-112 255-268 (309)
97 PF08273 Prim_Zn_Ribbon: Zinc- 54.0 13 0.00028 22.3 2.1 30 64-93 3-34 (40)
98 PRK00635 excinuclease ABC subu 53.0 8.8 0.00019 39.0 2.0 31 66-96 1609-1641(1809)
99 PRK04023 DNA polymerase II lar 52.9 9.6 0.00021 37.0 2.1 51 45-103 618-670 (1121)
100 PF08271 TF_Zn_Ribbon: TFIIB z 52.1 21 0.00045 20.9 2.8 11 66-76 2-12 (43)
101 TIGR01562 FdhE formate dehydro 51.4 14 0.00031 30.8 2.7 14 99-112 255-268 (305)
102 COG1198 PriA Primosomal protei 50.5 25 0.00055 32.7 4.4 48 54-106 436-485 (730)
103 PRK11032 hypothetical protein; 49.4 15 0.00032 28.1 2.3 35 61-98 121-155 (160)
104 PF08792 A2L_zn_ribbon: A2L zi 49.1 28 0.0006 19.9 2.9 11 66-76 5-15 (33)
105 TIGR00595 priA primosomal prot 49.0 24 0.00052 30.9 3.8 50 54-108 214-265 (505)
106 PF14205 Cys_rich_KTR: Cystein 48.0 26 0.00056 22.6 2.9 35 62-96 2-39 (55)
107 PRK14714 DNA polymerase II lar 46.3 15 0.00032 36.4 2.3 44 52-103 666-716 (1337)
108 PF12760 Zn_Tnp_IS1595: Transp 45.8 31 0.00068 20.4 2.9 26 65-92 19-44 (46)
109 TIGR00311 aIF-2beta translatio 44.3 30 0.00065 25.5 3.2 31 65-95 98-128 (133)
110 PRK03988 translation initiatio 44.1 29 0.00063 25.7 3.1 31 65-95 103-133 (138)
111 smart00778 Prim_Zn_Ribbon Zinc 42.3 22 0.00047 21.0 1.8 29 64-92 3-32 (37)
112 PF14803 Nudix_N_2: Nudix N-te 42.1 26 0.00057 20.2 2.1 28 66-93 2-30 (34)
113 COG2888 Predicted Zn-ribbon RN 41.3 17 0.00037 23.9 1.4 18 85-102 38-56 (61)
114 smart00653 eIF2B_5 domain pres 40.9 35 0.00077 24.3 3.1 30 64-93 80-109 (110)
115 PRK12336 translation initiatio 37.3 43 0.00093 26.0 3.3 9 65-73 99-107 (201)
116 PF01873 eIF-5_eIF-2B: Domain 37.0 30 0.00065 25.2 2.2 30 64-93 93-122 (125)
117 KOG0715 Molecular chaperone (D 35.9 16 0.00034 30.0 0.7 41 51-98 179-230 (288)
118 PF04236 Transp_Tc5_C: Tc5 tra 34.5 26 0.00057 22.8 1.4 22 86-107 28-51 (63)
119 smart00834 CxxC_CXXC_SSSS Puta 34.3 46 0.00099 18.5 2.3 9 85-93 26-34 (41)
120 PF03811 Zn_Tnp_IS1: InsA N-te 33.2 61 0.0013 18.8 2.7 28 64-91 5-35 (36)
121 PF03833 PolC_DP2: DNA polymer 32.8 15 0.00032 35.1 0.0 50 46-103 648-699 (900)
122 PF13453 zf-TFIIB: Transcripti 32.3 52 0.0011 19.0 2.4 7 67-73 2-8 (41)
123 PRK14559 putative protein seri 32.0 36 0.00078 31.2 2.3 46 54-109 2-53 (645)
124 PF09723 Zn-ribbon_8: Zinc rib 31.4 69 0.0015 18.7 2.8 28 66-93 7-34 (42)
125 PRK14890 putative Zn-ribbon RN 30.9 36 0.00078 22.2 1.6 41 52-102 6-54 (59)
126 PRK00420 hypothetical protein; 30.6 32 0.0007 24.9 1.5 10 94-103 38-47 (112)
127 COG5082 AIR1 Arginine methyltr 30.3 31 0.00066 27.3 1.4 46 51-98 58-110 (190)
128 PF07092 DUF1356: Protein of u 30.1 25 0.00055 28.6 0.9 13 85-97 38-50 (238)
129 PF10080 DUF2318: Predicted me 29.4 32 0.00069 24.4 1.3 22 52-73 34-61 (102)
130 PRK00564 hypA hydrogenase nick 28.4 35 0.00076 24.3 1.4 8 87-94 90-97 (117)
131 TIGR00595 priA primosomal prot 27.4 56 0.0012 28.6 2.7 36 52-95 221-263 (505)
132 PF13408 Zn_ribbon_recom: Reco 27.4 1.3E+02 0.0029 17.6 3.7 35 62-96 3-37 (58)
133 PRK14873 primosome assembly pr 26.9 89 0.0019 28.7 3.9 48 54-106 384-432 (665)
134 PRK05580 primosome assembly pr 26.8 67 0.0015 29.2 3.2 48 54-106 382-431 (679)
135 smart00659 RPOLCX RNA polymera 26.0 60 0.0013 19.5 1.9 10 85-94 19-28 (44)
136 PRK00488 pheS phenylalanyl-tRN 25.8 31 0.00068 29.3 0.8 40 28-78 243-282 (339)
137 PF10058 DUF2296: Predicted in 25.7 62 0.0013 20.3 2.0 29 65-93 23-52 (54)
138 PF00098 zf-CCHC: Zinc knuckle 25.5 41 0.00089 16.6 0.9 7 67-73 3-9 (18)
139 PRK12380 hydrogenase nickel in 25.5 48 0.001 23.4 1.6 7 88-94 89-95 (113)
140 KOG4623 Uncharacterized conser 23.8 31 0.00067 31.4 0.5 27 64-92 28-54 (611)
141 PHA00626 hypothetical protein 23.1 53 0.0011 21.5 1.3 16 87-102 13-29 (59)
142 PF14599 zinc_ribbon_6: Zinc-r 22.9 59 0.0013 21.1 1.5 10 65-74 31-40 (61)
143 PF09297 zf-NADH-PPase: NADH p 22.5 64 0.0014 17.6 1.4 25 66-93 5-29 (32)
144 PRK00398 rpoP DNA-directed RNA 22.5 83 0.0018 18.5 2.0 7 66-72 5-11 (46)
145 TIGR00757 RNaseEG ribonuclease 22.4 44 0.00095 28.9 1.1 12 66-77 392-403 (414)
146 PF15446 zf-PHD-like: PHD/FYVE 22.1 1E+02 0.0022 24.1 3.0 28 83-110 49-87 (175)
147 PF04438 zf-HIT: HIT zinc fing 22.1 58 0.0013 18.1 1.2 20 86-105 3-22 (30)
148 PF09862 DUF2089: Protein of u 21.8 89 0.0019 22.6 2.4 7 67-73 1-7 (113)
149 TIGR00100 hypA hydrogenase nic 20.9 68 0.0015 22.7 1.6 9 87-95 88-96 (115)
150 PF05180 zf-DNL: DNL zinc fing 20.8 62 0.0013 21.4 1.3 32 66-97 6-41 (66)
151 COG2260 Predicted Zn-ribbon RN 20.7 52 0.0011 21.5 0.9 22 85-106 5-27 (59)
152 PF01155 HypA: Hydrogenase exp 20.5 56 0.0012 23.0 1.1 10 86-95 71-80 (113)
153 PF05129 Elf1: Transcription e 20.0 99 0.0022 20.8 2.2 11 92-102 42-52 (81)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.2e-17 Score=132.64 Aligned_cols=74 Identities=30% Similarity=0.519 Sum_probs=64.7
Q ss_pred cceeEeeccceeccccCCCCCCCCCCCCCCCCCCCcccCccccccccccCCCCCCCcCeeeCCCCCCCceEEecc-CCcc
Q 033533 6 VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ-NNRI 84 (117)
Q Consensus 6 ~~v~~l~e~g~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSGkv~~~~-g~~~ 84 (117)
-||++|||+|+|.+||.++| . .....|+.|+|.||++|..||||.+++... +...
T Consensus 206 eeV~~LnE~GkL~~lL~~~p---~---------------------~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~ 261 (281)
T KOG2824|consen 206 EEVVRLNEEGKLGKLLKGIP---C---------------------EGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGG 261 (281)
T ss_pred HHhhhhhhcchHHHHHhcCC---C---------------------CCCCcCCCcCCcceEecCCCCCceeeeeeccCCCc
Confidence 37999999999999999885 1 356899999999999999999999998733 2356
Q ss_pred eeeCcccCCcceeeCCCCc
Q 033533 85 YRRCPTCRAVGYVLCSKCK 103 (117)
Q Consensus 85 ~~~Cp~C~G~Glv~Cp~C~ 103 (117)
+.+|+.||+|||++||.|.
T Consensus 262 ~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 262 VLRCLECNENGLVRCPVCS 280 (281)
T ss_pred EEECcccCCCCceeCCccC
Confidence 8999999999999999995
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.63 E-value=9.6e-17 Score=119.67 Aligned_cols=71 Identities=24% Similarity=0.511 Sum_probs=60.8
Q ss_pred cceeEeeccceeccccCCCCCCCCCCCCCCCCCCCcccCccccccccccCCCCCCCcCeeeCCCCCCCceEEeccC--Cc
Q 033533 6 VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQN--NR 83 (117)
Q Consensus 6 ~~v~~l~e~g~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSGkv~~~~g--~~ 83 (117)
.+|.+|||+|+|.++|..++.. .....|+.|+|.||++|..|+||.+++..++ ..
T Consensus 75 del~~L~e~G~L~~lL~~~~~~-----------------------~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~ 131 (147)
T cd03031 75 EEVLRLNESGELRKLLKGIRAR-----------------------AGGGVCEGCGGARFVPCSECNGSCKVFAENATAAG 131 (147)
T ss_pred HHHHHHHHcCCHHHHHhhcccc-----------------------cCCCCCCCCCCcCeEECCCCCCcceEEeccCcccc
Confidence 4688999999999999877322 3557799999999999999999999987653 35
Q ss_pred ceeeCcccCCcceeeC
Q 033533 84 IYRRCPTCRAVGYVLC 99 (117)
Q Consensus 84 ~~~~Cp~C~G~Glv~C 99 (117)
...+|+.||+|||++|
T Consensus 132 ~~~rC~~Cnengl~~c 147 (147)
T cd03031 132 GFLRCPECNENGLVRC 147 (147)
T ss_pred cEEECCCCCccccccC
Confidence 6799999999999988
No 3
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.86 E-value=5e-09 Score=75.59 Aligned_cols=58 Identities=26% Similarity=0.578 Sum_probs=50.1
Q ss_pred ccccCCCCCCCcCeeeCCCCCCCceEEecc-C-CcceeeCcccCCcceeeCCCCccceeE
Q 033533 51 EVGIMCESCNGKGWLVCDFCGGQKTNVKAQ-N-NRIYRRCPTCRAVGYVLCSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~v~C~~C~GSGkv~~~~-g-~~~~~~Cp~C~G~Glv~Cp~C~G~~~~ 108 (117)
.....|..|+|+|...|..|+|+|.+.... + .....+|+.|+|.|.+.|+.|+|.+-+
T Consensus 39 ~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 39 ENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred ccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCCCCEEE
Confidence 456899999999999999999999987543 2 245789999999999999999998875
No 4
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.83 E-value=7.1e-09 Score=67.44 Aligned_cols=51 Identities=31% Similarity=0.810 Sum_probs=39.0
Q ss_pred CCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee----CCCCccce
Q 033533 56 CESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL----CSKCKVFK 106 (117)
Q Consensus 56 C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~----Cp~C~G~~ 106 (117)
|+.|+|+|. ..|+.|+|+|+++... +. .....|+.|+|.|.++ |+.|+|.+
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 789999999 6999999999987643 22 5688999999999997 99999863
No 5
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.3e-08 Score=86.04 Aligned_cols=57 Identities=30% Similarity=0.708 Sum_probs=49.6
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc--CC-cceeeCcccCCcceee---CCCCcccee
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~--g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~ 107 (117)
.+...|+.|+|+|. ++|+.|+|+|++.... +. .....|+.|+|+|.++ |+.|.|.+=
T Consensus 140 ~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~ 208 (371)
T COG0484 140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR 208 (371)
T ss_pred ceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence 56789999999977 6999999999987665 54 5678999999999998 999999765
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.37 E-value=5.5e-07 Score=75.75 Aligned_cols=58 Identities=28% Similarity=0.666 Sum_probs=49.3
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|+++...+. .....|+.|+|.|.++ |+.|.|.+-|
T Consensus 171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v 238 (392)
T PRK14279 171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVT 238 (392)
T ss_pred eccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEE
Confidence 45689999999997 589999999998765543 4578999999999987 9999997765
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.32 E-value=7.4e-07 Score=74.44 Aligned_cols=58 Identities=33% Similarity=0.640 Sum_probs=49.1
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|.++...|. ....+|+.|+|.|.++ |+.|.|.+-+
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~ 215 (372)
T PRK14286 148 PRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQ 215 (372)
T ss_pred eccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEE
Confidence 45689999999997 689999999998765543 4577999999999987 9999998765
No 8
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=8.5e-07 Score=74.11 Aligned_cols=58 Identities=36% Similarity=0.791 Sum_probs=48.7
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|++....|. ....+|+.|+|.|.++ |+.|.|.+-|
T Consensus 142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 209 (373)
T PRK14301 142 PKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIV 209 (373)
T ss_pred eecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCcee
Confidence 45689999999997 589999999998765443 4578999999999986 9999997654
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=9.7e-07 Score=73.58 Aligned_cols=58 Identities=29% Similarity=0.746 Sum_probs=48.4
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|..|+|+|+++...|. ....+|+.|+|.|.++ |+.|.|.+=|
T Consensus 144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 211 (365)
T PRK14285 144 TRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSL 211 (365)
T ss_pred eecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEE
Confidence 45689999999996 589999999998764443 4578999999999986 9999997743
No 10
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.26 E-value=1.4e-06 Score=72.46 Aligned_cols=58 Identities=29% Similarity=0.678 Sum_probs=48.3
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|+++...|. ....+|+.|+|.|.++ |+.|.|.+-|
T Consensus 140 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 207 (371)
T PRK10767 140 PTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRV 207 (371)
T ss_pred eecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceE
Confidence 45689999999996 489999999998765543 4567999999999985 9999997754
No 11
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.24 E-value=1.2e-06 Score=73.48 Aligned_cols=58 Identities=31% Similarity=0.682 Sum_probs=48.0
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|.++...|. ....+|+.|+|.|.++ |+.|.|.+=|
T Consensus 156 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 223 (391)
T PRK14284 156 SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRI 223 (391)
T ss_pred eeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCccee
Confidence 45689999999997 589999999998765443 4567999999999986 9999996543
No 12
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.24 E-value=1.3e-06 Score=73.26 Aligned_cols=58 Identities=28% Similarity=0.605 Sum_probs=48.1
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|.++... +. .....|+.|+|.|.++ |+.|.|.+-|
T Consensus 139 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 210 (377)
T PRK14298 139 PRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKV 210 (377)
T ss_pred EeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEE
Confidence 45689999999997 6899999999987542 11 4578999999999886 9999998765
No 13
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.24 E-value=1.6e-06 Score=72.35 Aligned_cols=58 Identities=28% Similarity=0.689 Sum_probs=48.3
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|+++...|. ....+|+.|+|.|.++ |+.|.|.+=|
T Consensus 143 ~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 210 (372)
T PRK14300 143 SSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRY 210 (372)
T ss_pred eeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEE
Confidence 45689999999995 689999999998765443 4567999999999986 9999997654
No 14
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.24 E-value=1.2e-06 Score=73.61 Aligned_cols=57 Identities=26% Similarity=0.642 Sum_probs=47.9
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCcccee
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~ 107 (117)
.+...|..|.|+|. ..|+.|+|+|.++...+. ....+|+.|+|.|.++ |+.|.|.+=
T Consensus 164 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 230 (389)
T PRK14295 164 TSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGR 230 (389)
T ss_pred eccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCce
Confidence 45688999999996 689999999998765543 4577999999999987 999999653
No 15
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.21 E-value=2e-06 Score=71.85 Aligned_cols=58 Identities=29% Similarity=0.675 Sum_probs=47.7
Q ss_pred ccccCCCCCCCcCe-----eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|.++...|. .....|+.|+|.|.++ |+.|.|.+=|
T Consensus 138 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 204 (369)
T PRK14288 138 QYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYI 204 (369)
T ss_pred EeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceE
Confidence 45679999999996 589999999998765543 4567999999999986 9999997543
No 16
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.19 E-value=2.2e-06 Score=71.32 Aligned_cols=58 Identities=34% Similarity=0.754 Sum_probs=48.4
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|.++...|. ....+|+.|+|.|.++ |+.|.|.+=|
T Consensus 142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 209 (366)
T PRK14294 142 QKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRV 209 (366)
T ss_pred eecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEe
Confidence 45689999999997 589999999998765443 4578999999999986 9999997654
No 17
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.19 E-value=2.1e-06 Score=71.84 Aligned_cols=58 Identities=22% Similarity=0.574 Sum_probs=47.2
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc--CC---cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~--g~---~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|.++... |. +...+|+.|+|.|.++ |+.|.|.+-|
T Consensus 147 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v 218 (372)
T PRK14296 147 DLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKY 218 (372)
T ss_pred eeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEE
Confidence 45688999999997 5899999999987543 22 3457999999999987 9999997753
No 18
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.18 E-value=2.4e-06 Score=71.54 Aligned_cols=58 Identities=40% Similarity=0.902 Sum_probs=47.1
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|+++... |. .....|+.|+|.|.++ |+.|.|.+=|
T Consensus 137 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 208 (378)
T PRK14278 137 DTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRV 208 (378)
T ss_pred EeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeE
Confidence 45689999999996 5899999999976543 22 3467999999999987 9999997643
No 19
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.16 E-value=3.1e-06 Score=70.51 Aligned_cols=57 Identities=23% Similarity=0.505 Sum_probs=46.7
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCcccee
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~ 107 (117)
.+...|..|.|+|. ..|+.|+|+|+++... |. .....|+.|+|.|.++ |+.|.|.+=
T Consensus 150 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 220 (369)
T PRK14282 150 DRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGR 220 (369)
T ss_pred eecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCcee
Confidence 45689999999996 5899999999986542 22 3467999999999986 999999764
No 20
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.16 E-value=2.7e-06 Score=71.26 Aligned_cols=58 Identities=38% Similarity=0.770 Sum_probs=47.8
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee--CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL--CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~--Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|+++...+. .....|+.|+|.|.+. |+.|.|.+-+
T Consensus 154 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v 220 (382)
T PRK14291 154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRGLV 220 (382)
T ss_pred eeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCceE
Confidence 45689999999996 689999999998765433 4578999999999764 9999997754
No 21
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.15 E-value=2.4e-06 Score=71.39 Aligned_cols=58 Identities=29% Similarity=0.679 Sum_probs=48.5
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|+++... |. .....|+.|+|.|.++ |+.|.|.+-|
T Consensus 152 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 223 (386)
T PRK14289 152 KKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV 223 (386)
T ss_pred EeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEE
Confidence 45689999999997 6899999999987543 22 3578999999999986 9999999876
No 22
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.13 E-value=3.2e-06 Score=69.67 Aligned_cols=58 Identities=34% Similarity=0.701 Sum_probs=47.7
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEeccC----C-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN----N-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g----~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|..|+|+|.++...+ . ....+|+.|+|.|.++ |+.|.|.+-|
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (354)
T TIGR02349 141 PRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRV 212 (354)
T ss_pred ecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEe
Confidence 45689999999995 68999999999875432 2 3467999999999986 9999998764
No 23
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=4.2e-06 Score=70.05 Aligned_cols=58 Identities=24% Similarity=0.551 Sum_probs=47.0
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|.++... |. ....+|+.|+|.|.++ |+.|.|.+=|
T Consensus 144 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~ 215 (380)
T PRK14276 144 NREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHE 215 (380)
T ss_pred eccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEE
Confidence 45689999999997 5899999999976542 22 3467999999999986 9999996643
No 24
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=4.7e-06 Score=69.64 Aligned_cols=58 Identities=28% Similarity=0.643 Sum_probs=47.0
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|+++... |. .....|+.|+|.|.++ |+.|.|.+=|
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (376)
T PRK14280 141 PKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKV 212 (376)
T ss_pred eeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEE
Confidence 45689999999996 5899999999976543 21 3467999999999986 9999997744
No 25
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=5e-06 Score=69.72 Aligned_cols=58 Identities=28% Similarity=0.607 Sum_probs=47.3
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|+++... |. ....+|+.|+|.|.++ |+.|.|.+-|
T Consensus 153 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 224 (386)
T PRK14277 153 ERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRI 224 (386)
T ss_pred EeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEE
Confidence 45689999999986 6899999999876543 22 3457999999999987 9999997754
No 26
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.06 E-value=5e-06 Score=69.49 Aligned_cols=58 Identities=28% Similarity=0.589 Sum_probs=46.8
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|++.... |. .....|+.|+|.|.++ |+.|.|.+-+
T Consensus 136 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 207 (371)
T PRK14287 136 PREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKV 207 (371)
T ss_pred eeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEE
Confidence 45689999999995 6899999999876543 22 3467999999999986 9999997654
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.05 E-value=7.3e-06 Score=68.19 Aligned_cols=58 Identities=26% Similarity=0.605 Sum_probs=47.2
Q ss_pred ccccCCCCCCCcCe-----eeCCCCCCCceEEecc--CC---cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~--g~---~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|+++... |. ....+|+.|+|.|.++ |+.|.|.+-+
T Consensus 147 ~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 217 (365)
T PRK14290 147 RRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTV 217 (365)
T ss_pred eecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeE
Confidence 45688999999997 5899999999876543 22 2347999999999886 9999998875
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.02 E-value=6.7e-06 Score=69.25 Aligned_cols=58 Identities=29% Similarity=0.599 Sum_probs=46.9
Q ss_pred ccccCCCCCCCcCe-----eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|.++... |. ....+|+.|+|.|.++ |+.|.|.+=|
T Consensus 161 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 231 (397)
T PRK14281 161 KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIK 231 (397)
T ss_pred EeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccE
Confidence 45689999999997 5899999999986543 22 3467999999999986 9999996654
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.99 E-value=8.4e-06 Score=68.02 Aligned_cols=58 Identities=31% Similarity=0.674 Sum_probs=46.8
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|+++... |. ....+|..|+|.|.++ |+.|.|.+-|
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (374)
T PRK14293 141 PHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVK 212 (374)
T ss_pred eccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCccc
Confidence 45689999999987 5799999999876543 22 3457999999999985 9999997653
No 30
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.99 E-value=8.5e-06 Score=69.57 Aligned_cols=58 Identities=24% Similarity=0.723 Sum_probs=46.6
Q ss_pred ccccCCCCCCCcCe-----eeCCCCCCCceEEecc--CC---cceeeCcccCCcceee-----CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL-----CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~--g~---~~~~~Cp~C~G~Glv~-----Cp~C~G~~~~ 108 (117)
.+...|..|+|+|. ..|+.|+|+|.++... +. ....+|+.|+|.|.++ |+.|.|.+-|
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v 220 (421)
T PTZ00037 148 NKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVK 220 (421)
T ss_pred eccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCccee
Confidence 45689999999997 5899999999865432 21 3467999999999985 9999997765
No 31
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.98 E-value=9.8e-06 Score=67.75 Aligned_cols=57 Identities=32% Similarity=0.633 Sum_probs=46.7
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCcccee
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~ 107 (117)
.+...|..|.|+|. ..|+.|+|+|+++... |. ....+|+.|+|.|.++ |+.|.|.+-
T Consensus 146 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 216 (380)
T PRK14297 146 TRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGK 216 (380)
T ss_pred eeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeE
Confidence 45689999999996 5899999999876532 22 3578999999999986 999999764
No 32
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.94 E-value=1.1e-05 Score=67.41 Aligned_cols=58 Identities=28% Similarity=0.621 Sum_probs=47.3
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~ 108 (117)
.+...|..|.|+|. ..|+.|+|+|.++... |. ....+|..|+|.|..+ |..|.|.+.|
T Consensus 144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 215 (378)
T PRK14283 144 RHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVV 215 (378)
T ss_pred eeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceee
Confidence 45678999999886 5899999999987543 22 3467999999999985 9999998875
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5e-06 Score=70.22 Aligned_cols=54 Identities=30% Similarity=0.708 Sum_probs=40.1
Q ss_pred cCCCCCCCcCeeeCCCCCCCceEEec-----------------c---------CCcceeeCcccCCcceeeCCCCcccee
Q 033533 54 IMCESCNGKGWLVCDFCGGQKTNVKA-----------------Q---------NNRIYRRCPTCRAVGYVLCSKCKVFKC 107 (117)
Q Consensus 54 ~~C~~C~G~G~v~C~~C~GSGkv~~~-----------------~---------g~~~~~~Cp~C~G~Glv~Cp~C~G~~~ 107 (117)
..|..|.|.|.++|+.|+|+|...-. + ++++..+|+.|.|.|++.|.+|+|.+=
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgs 267 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGS 267 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCccc
Confidence 67999999999999999999932100 0 124567788888888888888887653
No 34
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.75 E-value=3e-05 Score=64.49 Aligned_cols=57 Identities=26% Similarity=0.592 Sum_probs=45.5
Q ss_pred ccccCCCCCCCcCe-------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCcccee
Q 033533 51 EVGIMCESCNGKGW-------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (117)
Q Consensus 51 ~~~~~C~~C~G~G~-------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~ 107 (117)
.+...|..|.|+|. ..|..|+|+|.++... |. ....+|+.|+|.|.++ |+.|.|.+=
T Consensus 137 ~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (371)
T PRK14292 137 DRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGR 208 (371)
T ss_pred EeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceE
Confidence 45688999999985 5899999999876432 22 3457999999999986 999999664
No 35
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.70 E-value=3.6e-05 Score=49.95 Aligned_cols=39 Identities=33% Similarity=0.791 Sum_probs=28.9
Q ss_pred ccccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcc
Q 033533 51 EVGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG 95 (117)
Q Consensus 51 ~~~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~G 95 (117)
.....|..|+|+|+ .+|+.|+|+|+++ . ..+|+.|+|+|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~-----~~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E-----KDPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T-----SSB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C-----CCCCCCCCCcC
Confidence 35578999999998 4899999999987 2 35999999986
No 36
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.00013 Score=65.69 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=19.5
Q ss_pred cCCCCCCCcCe-----eeCCCCCCCceEE
Q 033533 54 IMCESCNGKGW-----LVCDFCGGQKTNV 77 (117)
Q Consensus 54 ~~C~~C~G~G~-----v~C~~C~GSGkv~ 77 (117)
..|..|+|+|+ ..|+.|+|+|++.
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~ 31 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSD 31 (715)
T ss_pred ccccccCCCceEeeeeeeccccccccccc
Confidence 46889999988 3699999998863
No 37
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00022 Score=60.60 Aligned_cols=40 Identities=30% Similarity=0.682 Sum_probs=34.9
Q ss_pred cccCCCCCCCcCe-------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 52 VGIMCESCNGKGW-------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 52 ~~~~C~~C~G~G~-------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
....|..|+|+|. .+|+.|+|+|+++ ..+|+.|+|.|.+.
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------~~pC~~C~G~G~v~ 210 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------KDPCGKCKGKGRVK 210 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------CCCCCCCCCCCeEe
Confidence 5679999999995 5899999999987 35999999999964
No 38
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00054 Score=57.68 Aligned_cols=56 Identities=23% Similarity=0.603 Sum_probs=46.5
Q ss_pred ccccCCCCCCCcCe-----eeCCCCCCCceEEecc--C----CcceeeCcccCCccee-----eCCCCccce
Q 033533 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--N----NRIYRRCPTCRAVGYV-----LCSKCKVFK 106 (117)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~--g----~~~~~~Cp~C~G~Glv-----~Cp~C~G~~ 106 (117)
.....|+.|.|.|. ..|..|.|+|..+... + .+....|..|+|.|.. +|+.|.|.+
T Consensus 125 ~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~ 196 (337)
T KOG0712|consen 125 SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAK 196 (337)
T ss_pred ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccch
Confidence 56789999999999 3699999999865432 2 2568899999999998 699999965
No 39
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0005 Score=61.95 Aligned_cols=55 Identities=33% Similarity=0.718 Sum_probs=47.2
Q ss_pred cccCCCCCCCcCe------------------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee-CCCCccce
Q 033533 52 VGIMCESCNGKGW------------------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL-CSKCKVFK 106 (117)
Q Consensus 52 ~~~~C~~C~G~G~------------------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~-Cp~C~G~~ 106 (117)
....|.-|+|+|+ ++|+.|+|.|++.. +..|+.|+|.|.+. |..| |..
T Consensus 17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------~~~c~~c~G~gkv~~c~~c-G~~ 89 (715)
T COG1107 17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------YDTCPECGGTGKVLTCDIC-GDI 89 (715)
T ss_pred eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------EeecccCCCceeEEeeccc-cce
Confidence 4577999999998 58999999999874 78999999999987 9999 767
Q ss_pred eEeecCC
Q 033533 107 CVTFPNY 113 (117)
Q Consensus 107 ~~~~~~~ 113 (117)
.+-|+++
T Consensus 90 ~~~~~~~ 96 (715)
T COG1107 90 IVPWEEG 96 (715)
T ss_pred ecCcccc
Confidence 7777654
No 40
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.93 E-value=0.00078 Score=56.48 Aligned_cols=39 Identities=28% Similarity=0.812 Sum_probs=33.2
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 219 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------KNKCKNCKGKGKYL 219 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------cccccCCCCceEEE
Confidence 4679999999974 799999999986 35799999999763
No 41
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.81 E-value=0.0011 Score=55.54 Aligned_cols=38 Identities=26% Similarity=0.717 Sum_probs=30.1
Q ss_pred ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv 97 (117)
...|..|+|+|.+ +|+.|+|.|++. ..+|+.|+|.|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------KNPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------CCCCCCCCCceEE
Confidence 4678889888864 688888888875 3478888888886
No 42
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.81 E-value=0.00098 Score=55.97 Aligned_cols=39 Identities=31% Similarity=0.786 Sum_probs=33.1
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|.|.+ +|+.|+|+|+++ ..+|+.|+|.|.+.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 211 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------ESPCPVCSGTGKVR 211 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------CCCCCCCCCccEEE
Confidence 4679999999963 799999999975 34799999999874
No 43
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.80 E-value=0.0012 Score=55.81 Aligned_cols=39 Identities=28% Similarity=0.753 Sum_probs=27.3
Q ss_pred ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|+.|+|+|+++ ..+|..|+|.|.+.
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------~~~C~~C~G~g~v~ 239 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------EDPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------CCcCCCCCCCeEEE
Confidence 4567888887763 688888887765 23678888777653
No 44
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.79 E-value=0.0011 Score=55.46 Aligned_cols=39 Identities=28% Similarity=0.750 Sum_probs=29.3
Q ss_pred ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|+.|+|.|++. ..+|+.|+|.|.+.
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 212 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------SNPCKSCKGKGSLK 212 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------CCCCCCCCCCCEEe
Confidence 4578888888753 788888888875 34788888888763
No 45
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.79 E-value=0.0013 Score=54.97 Aligned_cols=38 Identities=29% Similarity=0.815 Sum_probs=27.4
Q ss_pred ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv 97 (117)
...|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v 204 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------KTPCQACKGKTYI 204 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------cccCccCCCcceE
Confidence 4568888888863 588888888765 2468888887765
No 46
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.78 E-value=0.0012 Score=55.25 Aligned_cols=39 Identities=33% Similarity=0.877 Sum_probs=33.0
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 213 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------KEKCPTCHGKGKVR 213 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------cCCCCCCCCceEEE
Confidence 4689999999863 799999999976 34799999999863
No 47
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.78 E-value=0.0012 Score=55.36 Aligned_cols=38 Identities=32% Similarity=0.770 Sum_probs=27.4
Q ss_pred cCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 54 ~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
..|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------SNPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------cccCCCCCCCcEEe
Confidence 568888888753 688888888765 23688888887764
No 48
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.75 E-value=0.0012 Score=54.93 Aligned_cols=39 Identities=28% Similarity=0.710 Sum_probs=30.5
Q ss_pred ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|+.|+|.|++. ..+|+.|+|.|.+.
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 208 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------KDPCKKCHGQGRVE 208 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------CCCCCCCCCCceEe
Confidence 3579999998875 599999998875 34799999988763
No 49
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.71 E-value=0.0016 Score=54.32 Aligned_cols=39 Identities=28% Similarity=0.748 Sum_probs=33.0
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|+.|+|+|++. ..+|..|+|.|.+.
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 222 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------GEYCHECGGSGRIR 222 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------CCCCCCCCCceeEE
Confidence 4689999999973 699999999975 34799999999764
No 50
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.70 E-value=0.0015 Score=54.83 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=33.0
Q ss_pred ccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|. .+|+.|+|.|+++ ..+|+.|+|.|.+.
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 209 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------PDPCHECAGDGRVR 209 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------CCCCCCCCCceeEe
Confidence 467999999986 3799999999986 34799999999863
No 51
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.69 E-value=0.0013 Score=55.13 Aligned_cols=39 Identities=31% Similarity=0.829 Sum_probs=29.3
Q ss_pred ccCCCCCCCcCe-----------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~-----------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|. .+|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 210 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------THPCPKCKGSGIVQ 210 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------CCCCCCCCCCceec
Confidence 357888888876 3688888888875 24688888888763
No 52
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.66 E-value=0.0013 Score=55.41 Aligned_cols=38 Identities=32% Similarity=0.830 Sum_probs=30.0
Q ss_pred ccCCCCCCCcCe-----------eeCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533 53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 53 ~~~C~~C~G~G~-----------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv 97 (117)
...|..|+|+|. .+|+.|+|.|+++ ..+|+.|+|.|.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------TDPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------CCcCCCCCCccee
Confidence 467888888887 4788888888875 2478888888876
No 53
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.64 E-value=0.0019 Score=55.30 Aligned_cols=42 Identities=29% Similarity=0.708 Sum_probs=34.5
Q ss_pred cccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 52 ~~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
....|..|+|.|. .+|+.|+|+|+++.. ..+|+.|+|.|.+.
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----SKKCKNCSGKGVKK 221 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----cccCCcCCCcceee
Confidence 3568999999994 389999999998742 35899999999874
No 54
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.64 E-value=0.0016 Score=54.67 Aligned_cols=39 Identities=31% Similarity=0.838 Sum_probs=32.9
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|+.|+|+|+++ ..+|+.|+|.|.+.
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~ 216 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------KEPCQTCHGTGHEK 216 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------cCCCCCCCCceEEE
Confidence 4689999999863 699999999986 34799999999863
No 55
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.53 E-value=0.0021 Score=53.83 Aligned_cols=39 Identities=33% Similarity=0.824 Sum_probs=32.8
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|+.|+|.|++. ..+|..|+|.|.+.
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 218 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------EDPCNKCHGKGKVR 218 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------CCCCCCCCCCeEEE
Confidence 4679999999864 799999999976 34899999999753
No 56
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.48 E-value=0.0023 Score=52.82 Aligned_cols=39 Identities=33% Similarity=0.806 Sum_probs=33.1
Q ss_pred ccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|. .+|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------KEPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------CCCCCCCCCCcEec
Confidence 578999999985 4799999999986 24799999999874
No 57
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.48 E-value=0.0023 Score=53.38 Aligned_cols=39 Identities=31% Similarity=0.723 Sum_probs=30.1
Q ss_pred ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|.|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 210 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------VSPCKTCHGQGRVR 210 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------CcCCCCCCCceEee
Confidence 3578889888863 699999988875 34788998888763
No 58
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.47 E-value=0.0028 Score=52.83 Aligned_cols=40 Identities=35% Similarity=0.855 Sum_probs=33.6
Q ss_pred cccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 52 ~~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
....|..|+|.|. .+|+.|+|.|++. ..+|+.|+|.|.+.
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 218 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------EEKCPRCNGTGTVV 218 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------cCCCCCCCCceeEE
Confidence 3568999999995 4899999999975 35899999999863
No 59
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.47 E-value=0.0026 Score=53.68 Aligned_cols=39 Identities=26% Similarity=0.598 Sum_probs=28.8
Q ss_pred ccCCCCCCCcCe-----------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~-----------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|. .+|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~ 232 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------DDPCLVCKGSGRAK 232 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------ccCCCCCCCCceEe
Confidence 467888888875 3788888888875 24688888888753
No 60
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.47 E-value=0.0024 Score=53.64 Aligned_cols=39 Identities=28% Similarity=0.778 Sum_probs=33.1
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|.|.+ +|+.|+|+|++. ..+|..|+|.|.+.
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 225 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------TDPCNKCGGTGRIR 225 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------cCCCCCCCCCcEEe
Confidence 4689999999863 699999999986 34799999999873
No 61
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.45 E-value=0.0027 Score=53.58 Aligned_cols=40 Identities=35% Similarity=0.804 Sum_probs=33.7
Q ss_pred cccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 52 ~~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
....|..|+|.|. .+|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 232 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------KDRCPACYGEGIKQ 232 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------CCCCCCCCCCccEe
Confidence 4568999999996 3699999999986 34799999999874
No 62
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.44 E-value=0.0025 Score=53.44 Aligned_cols=40 Identities=28% Similarity=0.760 Sum_probs=33.5
Q ss_pred cccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 52 ~~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
....|..|+|+|.+ +|+.|+|.|++. ..+|+.|+|.|.+.
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 224 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------KKKCKKCGGEGIVY 224 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------CcCCCCCCCCcEEe
Confidence 35789999999874 699999999876 34799999999863
No 63
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.34 E-value=0.0047 Score=44.65 Aligned_cols=34 Identities=32% Similarity=0.733 Sum_probs=25.9
Q ss_pred cCCCCCCCcCe------------eeCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533 54 IMCESCNGKGW------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 54 ~~C~~C~G~G~------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv 97 (117)
..|..|+|+|+ ..|+.|+|+|++ .|+.|.|+|.+
T Consensus 53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------~C~~C~G~G~~ 98 (111)
T PLN03165 53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------TCTTCQGSGIQ 98 (111)
T ss_pred cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------eCCCCCCCEEE
Confidence 47888888776 368888888762 48888888875
No 64
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.18 E-value=0.0034 Score=48.95 Aligned_cols=27 Identities=30% Similarity=0.709 Sum_probs=20.2
Q ss_pred cccCCCCCCCcCee-----eCCCCCCCceEEe
Q 033533 52 VGIMCESCNGKGWL-----VCDFCGGQKTNVK 78 (117)
Q Consensus 52 ~~~~C~~C~G~G~v-----~C~~C~GSGkv~~ 78 (117)
....|+.|+|+|++ +|+.|+|+|++..
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 35678888888875 3888888887653
No 65
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.15 E-value=0.0043 Score=51.87 Aligned_cols=38 Identities=26% Similarity=0.702 Sum_probs=32.3
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv 97 (117)
...|..|+|+|.+ +|+.|+|.|++. ..+|..|+|.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------EDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------ccCCCCCCCCccc
Confidence 4679999999973 699999999976 3479999999986
No 66
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.12 E-value=0.0045 Score=51.88 Aligned_cols=39 Identities=33% Similarity=0.770 Sum_probs=33.2
Q ss_pred ccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|. .+|+.|+|+|++. ..+|..|+|.|.+.
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 208 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------KQKCATCGGKGKVR 208 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------cccCCCCCCeeEEe
Confidence 467999999986 3799999999976 34799999999875
No 67
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.02 E-value=0.0058 Score=50.92 Aligned_cols=39 Identities=31% Similarity=0.750 Sum_probs=33.0
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|+|.+ +|..|+|.|+.. ..+|+.|+|.|.+.
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 210 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------TDPCTVCRGRGRTL 210 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------CCCCCCCCCceEEe
Confidence 5789999999974 599999999975 35899999999864
No 68
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.98 E-value=0.0074 Score=50.68 Aligned_cols=37 Identities=32% Similarity=0.863 Sum_probs=24.4
Q ss_pred ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv 97 (117)
...|..|+|+|.+ +|+.|+|+|.+ ...|..|+|.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL--------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE--------ccCCCCCCCCceE
Confidence 4567777777753 67777777742 2367777777765
No 69
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.82 E-value=0.0075 Score=50.51 Aligned_cols=39 Identities=31% Similarity=0.723 Sum_probs=32.7
Q ss_pred ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|+|.|.+ +|+.|+|+|+.. ..+|..|+|.|.+.
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 216 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------EKPCSNCHGKGVVR 216 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------CCCCCCCCCceeec
Confidence 4679999999884 599999999975 34799999999863
No 70
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0058 Score=52.03 Aligned_cols=37 Identities=32% Similarity=0.839 Sum_probs=29.2
Q ss_pred cccCCCCCCCcCeeeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 52 ~~~~C~~C~G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
....|..|+|+|..+|+.|+|.|+ .+|.+|.|.|.+.
T Consensus 233 t~~~C~~C~G~G~~~C~tC~grG~----------k~C~TC~gtgsll 269 (406)
T KOG2813|consen 233 THDLCYMCHGRGIKECHTCKGRGK----------KPCTTCSGTGSLL 269 (406)
T ss_pred ccchhhhccCCCcccCCcccCCCC----------cccccccCcccee
Confidence 446788888888888888888766 4899999999865
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.44 E-value=0.013 Score=45.70 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=25.2
Q ss_pred eeeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 64 ~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|+.|+|+|++... ..+|+.|+|.|.+.
T Consensus 99 ~~~C~~C~G~G~~i~~-----~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRR-----QRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecC-----CCCCCCCCCccEEe
Confidence 5799999999998742 25899999999874
No 72
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.15 Score=43.17 Aligned_cols=41 Identities=37% Similarity=0.807 Sum_probs=30.6
Q ss_pred ccCCCCCCCcCe----------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 53 GIMCESCNGKGW----------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 53 ~~~C~~C~G~G~----------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
...|..|.|+|. .+|..|+|+|..+.. ..+|+.|+|.+.+.
T Consensus 143 ~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~-----kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 143 APKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISL-----KDRCKTCSGAKVVR 199 (337)
T ss_pred CCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccc-----cccCcccccchhhh
Confidence 346888888887 578888888886422 45888888888763
No 73
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=0.3 Score=40.00 Aligned_cols=55 Identities=31% Similarity=0.636 Sum_probs=42.8
Q ss_pred ccccCCCCCCCcCe------eeCCCCCCCceEEecc--CCcceeeCcccCCcceee---CCCCccce
Q 033533 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NNRIYRRCPTCRAVGYVL---CSKCKVFK 106 (117)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~--g~~~~~~Cp~C~G~Glv~---Cp~C~G~~ 106 (117)
.....|..|.|.|. ..|..|+|.|++.... ..... .|..|++.|.+. |..|.|-.
T Consensus 162 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~ 227 (288)
T KOG0715|consen 162 NVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAG 227 (288)
T ss_pred EeecccccccCcCcccccccccchhhhCcccccccccCCccee-ecccccccceeccchHHHhhcch
Confidence 45578999999998 5999999999765432 22222 699999999997 88888866
No 74
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=81.44 E-value=0.76 Score=37.31 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=24.4
Q ss_pred cccCCCCCCCcCeeeCCCCCCCceEEecc
Q 033533 52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQ 80 (117)
Q Consensus 52 ~~~~C~~C~G~G~v~C~~C~GSGkv~~~~ 80 (117)
...++..-.|.+.++|+.|.|+|++-+..
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCccc
Confidence 44678888999999999999999987543
No 75
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=80.78 E-value=1.7 Score=26.91 Aligned_cols=28 Identities=32% Similarity=0.756 Sum_probs=16.3
Q ss_pred eeCCCCCCCceEEeccCC----c--ceeeCcccCC
Q 033533 65 LVCDFCGGQKTNVKAQNN----R--IYRRCPTCRA 93 (117)
Q Consensus 65 v~C~~C~GSGkv~~~~g~----~--~~~~Cp~C~G 93 (117)
++|++| |+..+...... . .++.|..|+.
T Consensus 4 kPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred cCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 589999 77665543311 1 4556666654
No 76
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=79.03 E-value=2.7 Score=25.88 Aligned_cols=32 Identities=34% Similarity=0.758 Sum_probs=18.7
Q ss_pred eeCCCCCCCceEEec---c-CCcceeeCcccCCcce
Q 033533 65 LVCDFCGGQKTNVKA---Q-NNRIYRRCPTCRAVGY 96 (117)
Q Consensus 65 v~C~~C~GSGkv~~~---~-g~~~~~~Cp~C~G~Gl 96 (117)
++|++|+|..+.+.. + +...+..|..|+..|-
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~ 37 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGP 37 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCcc
Confidence 479999998774431 1 1123336766666553
No 77
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.48 E-value=1.8 Score=40.87 Aligned_cols=30 Identities=23% Similarity=0.643 Sum_probs=14.4
Q ss_pred CCCCCCCceEEeccCC--cceeeCcccCCcce
Q 033533 67 CDFCGGQKTNVKAQNN--RIYRRCPTCRAVGY 96 (117)
Q Consensus 67 C~~C~GSGkv~~~~g~--~~~~~Cp~C~G~Gl 96 (117)
|+.|.|.|.+....+. ..+..|+.|+|..+
T Consensus 739 C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 739 CEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 5555555554432211 23456666665554
No 78
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=76.07 E-value=1.9 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=18.5
Q ss_pred eeCCCCCCCceEEecc--CCcceeeCcccCC
Q 033533 65 LVCDFCGGQKTNVKAQ--NNRIYRRCPTCRA 93 (117)
Q Consensus 65 v~C~~C~GSGkv~~~~--g~~~~~~Cp~C~G 93 (117)
+.|+.|+..-++.... ......+|+.|+.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 6899999887765431 1234667777753
No 79
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.86 E-value=3.5 Score=34.36 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.4
Q ss_pred eeCcccCCcceeeCCCCccceeEeecC
Q 033533 86 RRCPTCRAVGYVLCSKCKVFKCVTFPN 112 (117)
Q Consensus 86 ~~Cp~C~G~Glv~Cp~C~G~~~~~~~~ 112 (117)
..|..|+|.++++|..|.|..-|.+..
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~~~ 256 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHEEE 256 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeeeec
Confidence 579999999999999999988777743
No 80
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=71.22 E-value=2.9 Score=39.63 Aligned_cols=31 Identities=23% Similarity=0.598 Sum_probs=15.7
Q ss_pred eCCCCCCCceEEeccCC--cceeeCcccCCcce
Q 033533 66 VCDFCGGQKTNVKAQNN--RIYRRCPTCRAVGY 96 (117)
Q Consensus 66 ~C~~C~GSGkv~~~~g~--~~~~~Cp~C~G~Gl 96 (117)
.|+.|.|.|.+....+. ..+..|+.|+|..+
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCccc
Confidence 35555555555432211 23556666666554
No 81
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=67.12 E-value=3.9 Score=30.46 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=16.4
Q ss_pred eeCcccCCcceeeCCCCccceeE
Q 033533 86 RRCPTCRAVGYVLCSKCKVFKCV 108 (117)
Q Consensus 86 ~~Cp~C~G~Glv~Cp~C~G~~~~ 108 (117)
..|..|.|.+++.|..|.|.+=+
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~k~ 122 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSCKV 122 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcceE
Confidence 35778888888888888775444
No 82
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=65.54 E-value=2.9 Score=29.19 Aligned_cols=33 Identities=24% Similarity=0.696 Sum_probs=24.6
Q ss_pred eCCCCCCCceEEec-----c-CCcceeeCcccCCcceee
Q 033533 66 VCDFCGGQKTNVKA-----Q-NNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 66 ~C~~C~GSGkv~~~-----~-g~~~~~~Cp~C~G~Glv~ 98 (117)
.|..|+|.|.++.. . |......|..|.|.|+.+
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~sr 45 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYSR 45 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCCC
Confidence 57788888877643 2 446788999999999864
No 83
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=65.19 E-value=8.7 Score=25.49 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=18.7
Q ss_pred eeCCCCCCCceEEeccCCcceeeCcccCCcc
Q 033533 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG 95 (117)
Q Consensus 65 v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~G 95 (117)
++|++|...-..+...+.-.+..|..|+..|
T Consensus 7 KPCPFCG~~~~~v~~~~g~~~v~C~~CgA~~ 37 (64)
T PRK09710 7 KPCPFCGCPSVTVKAISGYYRAKCNGCESRT 37 (64)
T ss_pred cCCCCCCCceeEEEecCceEEEEcCCCCcCc
Confidence 5788888775555444443445666666543
No 84
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.99 E-value=4.8 Score=38.09 Aligned_cols=24 Identities=42% Similarity=1.073 Sum_probs=20.9
Q ss_pred ccCCCCCCCcCe------------eeCCCCCCCceE
Q 033533 53 GIMCESCNGKGW------------LVCDFCGGQKTN 76 (117)
Q Consensus 53 ~~~C~~C~G~G~------------v~C~~C~GSGkv 76 (117)
...|+.|.|.|+ ++|+.|+|++..
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 477999999998 589999999764
No 85
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=62.65 E-value=5.1 Score=38.11 Aligned_cols=22 Identities=36% Similarity=1.008 Sum_probs=14.4
Q ss_pred cCCCCCCCcCe------------eeCCCCCCCce
Q 033533 54 IMCESCNGKGW------------LVCDFCGGQKT 75 (117)
Q Consensus 54 ~~C~~C~G~G~------------v~C~~C~GSGk 75 (117)
..|+.|+|-|+ ++|..|+|...
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 56777777776 56666666644
No 86
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.14 E-value=3.4 Score=31.98 Aligned_cols=40 Identities=28% Similarity=0.741 Sum_probs=27.5
Q ss_pred cccCCCCCCCcCeeeCCCCCCCceEEeccCCcceeeCcccCC
Q 033533 52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (117)
Q Consensus 52 ~~~~C~~C~G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G 93 (117)
.-..|+-|.++|+ .|..|+.+..+. .=......+|+.|+.
T Consensus 141 HV~~C~lC~~kGf-iCe~C~~~~~If-PF~~~~~~~C~~C~~ 180 (202)
T PF13901_consen 141 HVYSCELCQQKGF-ICEICNSDDIIF-PFQIDTTVRCPKCKS 180 (202)
T ss_pred HHHHhHHHHhCCC-CCccCCCCCCCC-CCCCCCeeeCCcCcc
Confidence 3458999999998 899999884433 111124677887764
No 87
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=62.01 E-value=6.7 Score=37.37 Aligned_cols=31 Identities=23% Similarity=0.578 Sum_probs=24.0
Q ss_pred eCCCCCCCceEEeccCC--cceeeCcccCCcce
Q 033533 66 VCDFCGGQKTNVKAQNN--RIYRRCPTCRAVGY 96 (117)
Q Consensus 66 ~C~~C~GSGkv~~~~g~--~~~~~Cp~C~G~Gl 96 (117)
.|..|.|.|.+....+. .++.+|..|+|.-+
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 79999999988765543 56888888888654
No 88
>PF14353 CpXC: CpXC protein
Probab=61.32 E-value=11 Score=26.67 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=22.6
Q ss_pred eeCCCCCCCceEEe-----cc-----------CCcceeeCcccCCccee
Q 033533 65 LVCDFCGGQKTNVK-----AQ-----------NNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 65 v~C~~C~GSGkv~~-----~~-----------g~~~~~~Cp~C~G~Glv 97 (117)
++|+.|+....+.. .+ |.-....||.|+..+.+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 57999998876432 11 33457789999888765
No 89
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=59.54 E-value=8.3 Score=28.93 Aligned_cols=36 Identities=28% Similarity=0.622 Sum_probs=25.1
Q ss_pred CCcCeeeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 60 NGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 60 ~G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
-|.|..+|..|+-.-.+... ....+||.|++..+.+
T Consensus 108 ~g~G~l~C~~Cg~~~~~~~~---~~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 108 VGPGTLVCENCGHEVELTHP---ERLPPCPKCGHTEFTR 143 (146)
T ss_pred ecCceEecccCCCEEEecCC---CcCCCCCCCCCCeeee
Confidence 37788999999766444322 2357899998887754
No 90
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=59.52 E-value=8.1 Score=21.81 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=16.5
Q ss_pred eeCCCCCCCceEEecc--CCcceeeCcccCC
Q 033533 65 LVCDFCGGQKTNVKAQ--NNRIYRRCPTCRA 93 (117)
Q Consensus 65 v~C~~C~GSGkv~~~~--g~~~~~~Cp~C~G 93 (117)
+.|+.|+-.=++.... ......+|+.|+.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 5788888775554321 1123566777764
No 91
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=58.87 E-value=9.3 Score=30.77 Aligned_cols=43 Identities=28% Similarity=0.658 Sum_probs=20.6
Q ss_pred CcCeeeCCCCCCCceEEeccCCcceeeCcccCCccee----------------eCCCCccceeEee
Q 033533 61 GKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV----------------LCSKCKVFKCVTF 110 (117)
Q Consensus 61 G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv----------------~Cp~C~G~~~~~~ 110 (117)
|.++..|..|+-.=... +..|+.|+..... .|..|++|-=+++
T Consensus 194 G~R~L~Cs~C~t~W~~~-------R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~vd 252 (290)
T PF04216_consen 194 GKRYLHCSLCGTEWRFV-------RIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTVD 252 (290)
T ss_dssp -EEEEEETTT--EEE---------TTS-TTT---SS-EEE--------SEEEEEETTTTEEEEEEE
T ss_pred ccEEEEcCCCCCeeeec-------CCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHHh
Confidence 34567777776553322 3467777654332 2888888754444
No 92
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=58.26 E-value=7.1 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=17.7
Q ss_pred eeCCCCCCCceEEecc--CCcceeeCcccCC
Q 033533 65 LVCDFCGGQKTNVKAQ--NNRIYRRCPTCRA 93 (117)
Q Consensus 65 v~C~~C~GSGkv~~~~--g~~~~~~Cp~C~G 93 (117)
+.|+.|+-.-.+-... ......+|+.|+.
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 6788888765543321 2244677877764
No 93
>PF15616 TerY-C: TerY-C metal binding domain
Probab=57.64 E-value=15 Score=27.36 Aligned_cols=39 Identities=23% Similarity=0.480 Sum_probs=25.9
Q ss_pred cCCCCCCCc-CeeeCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533 54 IMCESCNGK-GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 54 ~~C~~C~G~-G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv 97 (117)
-.|..|+.. +++.| .| |+++=.++ .....||.|+-+|..
T Consensus 78 PgCP~CGn~~~fa~C-~C---Gkl~Ci~g-~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GC---GKLFCIDG-EGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhcEEEe-cC---CCEEEeCC-CCCEECCCCCCeeee
Confidence 579999999 88888 56 45543222 235677777766653
No 94
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=57.22 E-value=5.9 Score=37.59 Aligned_cols=21 Identities=33% Similarity=0.849 Sum_probs=16.2
Q ss_pred eeCcccCCcceee------------CCCCccce
Q 033533 86 RRCPTCRAVGYVL------------CSKCKVFK 106 (117)
Q Consensus 86 ~~Cp~C~G~Glv~------------Cp~C~G~~ 106 (117)
-+|+.|.|.|.+. |+.|.|++
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R 771 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKR 771 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCcc
Confidence 3688888888764 88888865
No 95
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=56.76 E-value=7.8 Score=39.40 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=7.0
Q ss_pred ccCCCCCCCcCe
Q 033533 53 GIMCESCNGKGW 64 (117)
Q Consensus 53 ~~~C~~C~G~G~ 64 (117)
...|+.|.|.|.
T Consensus 1607 ~GrC~~C~G~G~ 1618 (1809)
T PRK00635 1607 QGQCSDCWGLGY 1618 (1809)
T ss_pred CCCCCCCccCce
Confidence 345666666665
No 96
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=54.36 E-value=15 Score=30.76 Aligned_cols=14 Identities=14% Similarity=0.729 Sum_probs=8.4
Q ss_pred CCCCccceeEeecC
Q 033533 99 CSKCKVFKCVTFPN 112 (117)
Q Consensus 99 Cp~C~G~~~~~~~~ 112 (117)
|..|++|-=+.|.+
T Consensus 255 C~~C~~YlK~~~~~ 268 (309)
T PRK03564 255 CGDCGTYLKILYQE 268 (309)
T ss_pred cccccccceecccc
Confidence 77777764444544
No 97
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=53.97 E-value=13 Score=22.27 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=14.4
Q ss_pred eeeCCCCCCCceEE-ecc-CCcceeeCcccCC
Q 033533 64 WLVCDFCGGQKTNV-KAQ-NNRIYRRCPTCRA 93 (117)
Q Consensus 64 ~v~C~~C~GSGkv~-~~~-g~~~~~~Cp~C~G 93 (117)
..+|+.|.|+-+.. -.+ ......-|..|++
T Consensus 3 h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~~ 34 (40)
T PF08273_consen 3 HGPCPICGGKDRFRIFDDKDGRGTWICRQCGG 34 (40)
T ss_dssp EE--TTTT-TTTEEEETT----S-EEETTTTB
T ss_pred CCCCCCCcCccccccCcCcccCCCEECCCCCC
Confidence 46899999997654 333 1233456666643
No 98
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=52.97 E-value=8.8 Score=39.04 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=24.2
Q ss_pred eCCCCCCCceEEeccCC--cceeeCcccCCcce
Q 033533 66 VCDFCGGQKTNVKAQNN--RIYRRCPTCRAVGY 96 (117)
Q Consensus 66 ~C~~C~GSGkv~~~~g~--~~~~~Cp~C~G~Gl 96 (117)
.|+.|.|.|.+...... ..+.+|+.|+|..+
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 69999999998654322 46789999998765
No 99
>PRK04023 DNA polymerase II large subunit; Validated
Probab=52.93 E-value=9.6 Score=37.00 Aligned_cols=51 Identities=27% Similarity=0.539 Sum_probs=36.5
Q ss_pred ccccccccccCCCCCCCcCe-eeCCCCCCCceEEeccCCcceeeCcccCCcce-eeCCCCc
Q 033533 45 PVKQEVEVGIMCESCNGKGW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY-VLCSKCK 103 (117)
Q Consensus 45 ~~~~~~~~~~~C~~C~G~G~-v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Gl-v~Cp~C~ 103 (117)
..++.+.....|.+|+-..+ ..|+.|+.... ...+|+.|.-..- -.||.|.
T Consensus 618 g~~eVEVg~RfCpsCG~~t~~frCP~CG~~Te--------~i~fCP~CG~~~~~y~CPKCG 670 (1121)
T PRK04023 618 GTIEVEIGRRKCPSCGKETFYRRCPFCGTHTE--------PVYRCPRCGIEVEEDECEKCG 670 (1121)
T ss_pred CceeecccCccCCCCCCcCCcccCCCCCCCCC--------cceeCccccCcCCCCcCCCCC
Confidence 44445566789999998866 59999988722 1458999976554 3499993
No 100
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=52.07 E-value=21 Score=20.89 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=7.2
Q ss_pred eCCCCCCCceE
Q 033533 66 VCDFCGGQKTN 76 (117)
Q Consensus 66 ~C~~C~GSGkv 76 (117)
.|+.|+.+..+
T Consensus 2 ~Cp~Cg~~~~~ 12 (43)
T PF08271_consen 2 KCPNCGSKEIV 12 (43)
T ss_dssp SBTTTSSSEEE
T ss_pred CCcCCcCCceE
Confidence 47778776633
No 101
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=51.44 E-value=14 Score=30.83 Aligned_cols=14 Identities=14% Similarity=0.705 Sum_probs=7.2
Q ss_pred CCCCccceeEeecC
Q 033533 99 CSKCKVFKCVTFPN 112 (117)
Q Consensus 99 Cp~C~G~~~~~~~~ 112 (117)
|..|++|-=+.|.+
T Consensus 255 C~~C~~YlK~~~~~ 268 (305)
T TIGR01562 255 CDSCQGYLKILYQE 268 (305)
T ss_pred ccccccchhhhccc
Confidence 66666654333443
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=50.54 E-value=25 Score=32.73 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=35.6
Q ss_pred cCCCCCCCcCeeeCCCCCCCceEEeccCCcceeeCcccCCcceee--CCCCccce
Q 033533 54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL--CSKCKVFK 106 (117)
Q Consensus 54 ~~C~~C~G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~--Cp~C~G~~ 106 (117)
..|..|+= ...|++|..+=..++.. ...+|+.|+-...+. ||.|.+..
T Consensus 436 l~C~~Cg~--v~~Cp~Cd~~lt~H~~~---~~L~CH~Cg~~~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 436 LLCRDCGY--IAECPNCDSPLTLHKAT---GQLRCHYCGYQEPIPQSCPECGSEH 485 (730)
T ss_pred eecccCCC--cccCCCCCcceEEecCC---CeeEeCCCCCCCCCCCCCCCCCCCe
Confidence 67888852 25999999985444332 368999999996665 99998863
No 103
>PRK11032 hypothetical protein; Provisional
Probab=49.40 E-value=15 Score=28.13 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=22.6
Q ss_pred CcCeeeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 61 GKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 61 G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
|.|..+|..|+=.-.+... ....+||.|++..+.+
T Consensus 121 g~G~LvC~~Cg~~~~~~~p---~~i~pCp~C~~~~F~R 155 (160)
T PRK11032 121 GLGNLVCEKCHHHLAFYTP---EVLPLCPKCGHDQFQR 155 (160)
T ss_pred ecceEEecCCCCEEEecCC---CcCCCCCCCCCCeeee
Confidence 6677888888765443321 2356788888876654
No 104
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=49.09 E-value=28 Score=19.87 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=5.8
Q ss_pred eCCCCCCCceE
Q 033533 66 VCDFCGGQKTN 76 (117)
Q Consensus 66 ~C~~C~GSGkv 76 (117)
.|..|++.+-+
T Consensus 5 ~C~~C~~~~i~ 15 (33)
T PF08792_consen 5 KCSKCGGNGIV 15 (33)
T ss_pred EcCCCCCCeEE
Confidence 45555555544
No 105
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.98 E-value=24 Score=30.90 Aligned_cols=50 Identities=28% Similarity=0.546 Sum_probs=35.8
Q ss_pred cCCCCCCCcCeeeCCCCCCCceEEeccCCcceeeCcccCCcceee--CCCCccceeE
Q 033533 54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL--CSKCKVFKCV 108 (117)
Q Consensus 54 ~~C~~C~G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~--Cp~C~G~~~~ 108 (117)
..|..|+- ...|+.|+++=..+...+ ...|+.|+-.-.+. ||.|.+..-.
T Consensus 214 ~~C~~Cg~--~~~C~~C~~~l~~h~~~~---~l~Ch~Cg~~~~~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 214 LLCRSCGY--ILCCPNCDVSLTYHKKEG---KLRCHYCGYQEPIPKTCPQCGSEDLV 265 (505)
T ss_pred eEhhhCcC--ccCCCCCCCceEEecCCC---eEEcCCCcCcCCCCCCCCCCCCCeeE
Confidence 46888864 368999999755544322 67999998776654 9999886544
No 106
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=47.99 E-value=26 Score=22.63 Aligned_cols=35 Identities=20% Similarity=0.678 Sum_probs=21.5
Q ss_pred cCeeeCCCCCCCceEEeccCC---cceeeCcccCCcce
Q 033533 62 KGWLVCDFCGGQKTNVKAQNN---RIYRRCPTCRAVGY 96 (117)
Q Consensus 62 ~G~v~C~~C~GSGkv~~~~g~---~~~~~Cp~C~G~Gl 96 (117)
..|+.|+.|++..++...... ..-.-||.|.-.-+
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 368899999998776543211 12346777765443
No 107
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=46.31 E-value=15 Score=36.45 Aligned_cols=44 Identities=32% Similarity=0.724 Sum_probs=31.0
Q ss_pred cccCCCCCCCcCe-eeCCCCCCCceEEeccCCcceeeCcccCCc------ceeeCCCCc
Q 033533 52 VGIMCESCNGKGW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRAV------GYVLCSKCK 103 (117)
Q Consensus 52 ~~~~C~~C~G~G~-v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~------Glv~Cp~C~ 103 (117)
....|..|+...+ ..|+.|+..-.. ...|+.|+.. +-..||.|.
T Consensus 666 ~~rkCPkCG~~t~~~fCP~CGs~te~--------vy~CPsCGaev~~des~a~~CP~CG 716 (1337)
T PRK14714 666 GRRRCPSCGTETYENRCPDCGTHTEP--------VYVCPDCGAEVPPDESGRVECPRCD 716 (1337)
T ss_pred EEEECCCCCCccccccCcccCCcCCC--------ceeCccCCCccCCCccccccCCCCC
Confidence 3478999998654 589999887432 2388998773 334699884
No 108
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=45.80 E-value=31 Score=20.44 Aligned_cols=26 Identities=35% Similarity=0.862 Sum_probs=14.0
Q ss_pred eeCCCCCCCceEEeccCCcceeeCcccC
Q 033533 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (117)
Q Consensus 65 v~C~~C~GSGkv~~~~g~~~~~~Cp~C~ 92 (117)
++|+.|+.. ++....+ ...-+|..|.
T Consensus 19 ~~CP~Cg~~-~~~~~~~-~~~~~C~~C~ 44 (46)
T PF12760_consen 19 FVCPHCGST-KHYRLKT-RGRYRCKACR 44 (46)
T ss_pred CCCCCCCCe-eeEEeCC-CCeEECCCCC
Confidence 458888887 3332222 2345666664
No 109
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=44.26 E-value=30 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.530 Sum_probs=15.5
Q ss_pred eeCCCCCCCceEEeccCCcceeeCcccCCcc
Q 033533 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG 95 (117)
Q Consensus 65 v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~G 95 (117)
|.|+.|+..-.....++.....+|..|+...
T Consensus 98 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~ 128 (133)
T TIGR00311 98 VICRECNRPDTRIIKEGRVSLLKCEACGAKA 128 (133)
T ss_pred EECCCCCCCCcEEEEeCCeEEEecccCCCCC
Confidence 6677776664433323332334555555543
No 110
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=44.12 E-value=29 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.563 Sum_probs=16.2
Q ss_pred eeCCCCCCCceEEeccCCcceeeCcccCCcc
Q 033533 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG 95 (117)
Q Consensus 65 v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~G 95 (117)
|.|+.|+..-.....+++....+|..|+...
T Consensus 103 VlC~~C~spdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T PRK03988 103 VICPECGSPDTKLIKEGRIWVLKCEACGAET 133 (138)
T ss_pred EECCCCCCCCcEEEEcCCeEEEEcccCCCCC
Confidence 6677776664433333333455566665543
No 111
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=42.30 E-value=22 Score=20.96 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=15.8
Q ss_pred eeeCCCCCCCceEEecc-CCcceeeCcccC
Q 033533 64 WLVCDFCGGQKTNVKAQ-NNRIYRRCPTCR 92 (117)
Q Consensus 64 ~v~C~~C~GSGkv~~~~-g~~~~~~Cp~C~ 92 (117)
..+|+.|.|+.+..-.+ .......|..|+
T Consensus 3 ~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg 32 (37)
T smart00778 3 HGPCPNCGGSDRFRFDDKDGRGTWFCSVCG 32 (37)
T ss_pred ccCCCCCCCccccccccCCCCcCEEeCCCC
Confidence 46889998886543222 112334555553
No 112
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=42.06 E-value=26 Score=20.16 Aligned_cols=28 Identities=29% Similarity=0.659 Sum_probs=12.6
Q ss_pred eCCCCCCCceEEeccCC-cceeeCcccCC
Q 033533 66 VCDFCGGQKTNVKAQNN-RIYRRCPTCRA 93 (117)
Q Consensus 66 ~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G 93 (117)
-|+.|.+.=.....+|+ +.+..|+.|+-
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred ccccccChhhhhcCCCCCccceECCCCCC
Confidence 48888887443333333 55677888753
No 113
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=41.25 E-value=17 Score=23.91 Aligned_cols=18 Identities=44% Similarity=1.141 Sum_probs=11.1
Q ss_pred eeeCcccCCcceee-CCCC
Q 033533 85 YRRCPTCRAVGYVL-CSKC 102 (117)
Q Consensus 85 ~~~Cp~C~G~Glv~-Cp~C 102 (117)
..||..|...|... ||.|
T Consensus 38 I~Rc~~CRk~g~~Y~Cp~C 56 (61)
T COG2888 38 IYRCAKCRKLGNPYRCPKC 56 (61)
T ss_pred eehhhhHHHcCCceECCCc
Confidence 34666666666553 7777
No 114
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=40.90 E-value=35 Score=24.33 Aligned_cols=30 Identities=27% Similarity=0.786 Sum_probs=18.1
Q ss_pred eeeCCCCCCCceEEeccCCcceeeCcccCC
Q 033533 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (117)
Q Consensus 64 ~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G 93 (117)
||.|+.|+..-.....++.....+|..|+.
T Consensus 80 yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 109 (110)
T smart00653 80 YVLCPECGSPDTELIKENRLFFLKCEACGA 109 (110)
T ss_pred cEECCCCCCCCcEEEEeCCeEEEEccccCC
Confidence 477888877754443334445667777754
No 115
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=37.28 E-value=43 Score=26.02 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=4.1
Q ss_pred eeCCCCCCC
Q 033533 65 LVCDFCGGQ 73 (117)
Q Consensus 65 v~C~~C~GS 73 (117)
|.|+.|+-.
T Consensus 99 V~C~~C~~p 107 (201)
T PRK12336 99 VICSECGLP 107 (201)
T ss_pred EECCCCCCC
Confidence 444444444
No 116
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=37.04 E-value=30 Score=25.22 Aligned_cols=30 Identities=27% Similarity=0.781 Sum_probs=18.8
Q ss_pred eeeCCCCCCCceEEeccCCcceeeCcccCC
Q 033533 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (117)
Q Consensus 64 ~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G 93 (117)
||.|+.|+..-..+..++.....+|..|+.
T Consensus 93 yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 122 (125)
T PF01873_consen 93 YVLCPECGSPDTELIKEGRLIFLKCKACGA 122 (125)
T ss_dssp HSSCTSTSSSSEEEEEETTCCEEEETTTSC
T ss_pred EEEcCCCCCCccEEEEcCCEEEEEecccCC
Confidence 377777877755544444445667777764
No 117
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=35.95 E-value=16 Score=30.00 Aligned_cols=41 Identities=29% Similarity=0.822 Sum_probs=31.4
Q ss_pred ccccCCCCCCCcCe----------e-eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 51 EVGIMCESCNGKGW----------L-VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 51 ~~~~~C~~C~G~G~----------v-~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
.....|..|.|.|. . +|..|+|.+.+... .|..|.|.|.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~-------~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 179 AKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRD-------NCQACSGAGQVR 230 (288)
T ss_pred cccccchhhhCcccccccccCCcceeecccccccceeccc-------hHHHhhcchhhh
Confidence 46688999999992 3 49999999987632 388888888653
No 118
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.54 E-value=26 Score=22.84 Aligned_cols=22 Identities=27% Similarity=0.862 Sum_probs=12.8
Q ss_pred eeCcc--cCCcceeeCCCCcccee
Q 033533 86 RRCPT--CRAVGYVLCSKCKVFKC 107 (117)
Q Consensus 86 ~~Cp~--C~G~Glv~Cp~C~G~~~ 107 (117)
..|.. |+..+.++|+-|+-+-|
T Consensus 28 ~~C~~~gC~~~s~I~C~~Ckk~~C 51 (63)
T PF04236_consen 28 GDCDITGCNNTSFIRCAYCKKSLC 51 (63)
T ss_pred CcCCCCCCCCcCEEEccccCCccc
Confidence 34555 66666666666655544
No 119
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.28 E-value=46 Score=18.54 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=5.5
Q ss_pred eeeCcccCC
Q 033533 85 YRRCPTCRA 93 (117)
Q Consensus 85 ~~~Cp~C~G 93 (117)
...||.|++
T Consensus 26 ~~~CP~Cg~ 34 (41)
T smart00834 26 LATCPECGG 34 (41)
T ss_pred CCCCCCCCC
Confidence 445666665
No 120
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=33.24 E-value=61 Score=18.80 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=16.2
Q ss_pred eeeCCCCCCCceEEecc-C--CcceeeCccc
Q 033533 64 WLVCDFCGGQKTNVKAQ-N--NRIYRRCPTC 91 (117)
Q Consensus 64 ~v~C~~C~GSGkv~~~~-g--~~~~~~Cp~C 91 (117)
.+.|+.|+.+-.+.... + +...-+|..|
T Consensus 5 ~v~CP~C~s~~~v~k~G~~~~G~qryrC~~C 35 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKSPSGHQRYRCKDC 35 (36)
T ss_pred eeeCCCCCCCCcceeCCCCCCCCEeEecCcC
Confidence 36899999887444321 1 1234566666
No 121
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=32.79 E-value=15 Score=35.12 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=0.0
Q ss_pred cccccccccCCCCCCCcCe-eeCCCCCCCceEEeccCCcceeeCcccCCccee-eCCCCc
Q 033533 46 VKQEVEVGIMCESCNGKGW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV-LCSKCK 103 (117)
Q Consensus 46 ~~~~~~~~~~C~~C~G~G~-v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv-~Cp~C~ 103 (117)
.+..+-....|..|+-..+ ..|+.|++.... ...|+.|+-.-.- .||.|.
T Consensus 648 ~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~--------~~~Cp~C~~~~~~~~C~~C~ 699 (900)
T PF03833_consen 648 TIEVEIGRRRCPKCGKETFYNRCPECGSHTEP--------VYVCPDCGIEVEEDECPKCG 699 (900)
T ss_dssp ------------------------------------------------------------
T ss_pred eeEEeeecccCcccCCcchhhcCcccCCcccc--------ceeccccccccCcccccccc
Confidence 3444455678999998888 699999887553 3578888764322 488884
No 122
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.33 E-value=52 Score=18.96 Aligned_cols=7 Identities=43% Similarity=1.251 Sum_probs=4.2
Q ss_pred CCCCCCC
Q 033533 67 CDFCGGQ 73 (117)
Q Consensus 67 C~~C~GS 73 (117)
|+.|+..
T Consensus 2 CP~C~~~ 8 (41)
T PF13453_consen 2 CPRCGTE 8 (41)
T ss_pred cCCCCcc
Confidence 6666553
No 123
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.95 E-value=36 Score=31.21 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=26.7
Q ss_pred cCCCCCCCc---CeeeCCCCCCCceEEeccCCcceeeCcccCCc---ceeeCCCCccceeEe
Q 033533 54 IMCESCNGK---GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV---GYVLCSKCKVFKCVT 109 (117)
Q Consensus 54 ~~C~~C~G~---G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~---Glv~Cp~C~G~~~~~ 109 (117)
..|..|+.. +..-|..|+.+-. ...|+.|+.. |-..|+.| |++-.|
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~---------~~~Cp~CG~~~~~~~~fC~~C-G~~~~~ 53 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLT---------HKPCPQCGTEVPVDEAHCPNC-GAETGT 53 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCC---------CCcCCCCCCCCCccccccccc-CCcccc
Confidence 357777543 4467878844421 1367888654 44458888 555543
No 124
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.42 E-value=69 Score=18.72 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=12.5
Q ss_pred eCCCCCCCceEEeccCCcceeeCcccCC
Q 033533 66 VCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (117)
Q Consensus 66 ~C~~C~GSGkv~~~~g~~~~~~Cp~C~G 93 (117)
.|..|+..-.+...-.......||.|++
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 3555554433332211123456666666
No 125
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=30.87 E-value=36 Score=22.22 Aligned_cols=41 Identities=29% Similarity=0.705 Sum_probs=23.5
Q ss_pred cccCCCCCCCc------Ce-eeCCCCCCCceEEeccCCcceeeCcccCCcceee-CCCC
Q 033533 52 VGIMCESCNGK------GW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL-CSKC 102 (117)
Q Consensus 52 ~~~~C~~C~G~------G~-v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~-Cp~C 102 (117)
....|.+|+.. +. -.|+.| |..+ ..||..|...+... ||.|
T Consensus 6 ~~~~CtSCg~~i~~~~~~~~F~CPnC---G~~~-------I~RC~~CRk~~~~Y~CP~C 54 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKAVKFLCPNC---GEVI-------IYRCEKCRKQSNPYTCPKC 54 (59)
T ss_pred cCccccCCCCcccCCCccCEeeCCCC---CCee-------EeechhHHhcCCceECCCC
Confidence 34567777632 11 367777 2221 34677777666553 7777
No 126
>PRK00420 hypothetical protein; Validated
Probab=30.58 E-value=32 Score=24.86 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=5.3
Q ss_pred cceeeCCCCc
Q 033533 94 VGYVLCSKCK 103 (117)
Q Consensus 94 ~Glv~Cp~C~ 103 (117)
+|.+.||.|.
T Consensus 38 ~g~~~Cp~Cg 47 (112)
T PRK00420 38 DGEVVCPVHG 47 (112)
T ss_pred CCceECCCCC
Confidence 4555566554
No 127
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=30.26 E-value=31 Score=27.28 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=30.2
Q ss_pred ccccCCCCCCCcCee-------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533 51 EVGIMCESCNGKGWL-------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (117)
Q Consensus 51 ~~~~~C~~C~G~G~v-------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~ 98 (117)
.....|-.|+..|.+ .|..|+=.+.....- .....|..|+++|-+.
T Consensus 58 ~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~~C--~~~~~C~~Cg~~GH~~ 110 (190)
T COG5082 58 EENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSNHC--PKPKKCYNCGETGHLS 110 (190)
T ss_pred ccccccchhcccCcccccCChhHhhhcCCCCcccccC--CcccccccccccCccc
Confidence 456889999999983 455884344332210 1236899999998865
No 128
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=30.07 E-value=25 Score=28.61 Aligned_cols=13 Identities=38% Similarity=0.996 Sum_probs=8.0
Q ss_pred eeeCcccCCccee
Q 033533 85 YRRCPTCRAVGYV 97 (117)
Q Consensus 85 ~~~Cp~C~G~Glv 97 (117)
...||+|+|.|.+
T Consensus 38 ~vtCPTCqGtGrI 50 (238)
T PF07092_consen 38 SVTCPTCQGTGRI 50 (238)
T ss_pred CCcCCCCcCCccC
Confidence 3466666666664
No 129
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=29.38 E-value=32 Score=24.40 Aligned_cols=22 Identities=45% Similarity=0.916 Sum_probs=15.8
Q ss_pred cccCCCCCCCcCe------eeCCCCCCC
Q 033533 52 VGIMCESCNGKGW------LVCDFCGGQ 73 (117)
Q Consensus 52 ~~~~C~~C~G~G~------v~C~~C~GS 73 (117)
.-..|+-|+++|+ ++|..|+-.
T Consensus 34 a~daCeiC~~~GY~q~g~~lvC~~C~~~ 61 (102)
T PF10080_consen 34 AFDACEICGPKGYYQEGDQLVCKNCGVR 61 (102)
T ss_pred EEEeccccCCCceEEECCEEEEecCCCE
Confidence 3457888888887 678888653
No 130
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.38 E-value=35 Score=24.27 Aligned_cols=8 Identities=25% Similarity=0.858 Sum_probs=3.8
Q ss_pred eCcccCCc
Q 033533 87 RCPTCRAV 94 (117)
Q Consensus 87 ~Cp~C~G~ 94 (117)
+||.|++.
T Consensus 90 ~CP~Cgs~ 97 (117)
T PRK00564 90 VCEKCHSK 97 (117)
T ss_pred cCcCCCCC
Confidence 35555543
No 131
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.43 E-value=56 Score=28.63 Aligned_cols=36 Identities=31% Similarity=0.812 Sum_probs=21.6
Q ss_pred cccCCCCCC-------CcCeeeCCCCCCCceEEeccCCcceeeCcccCCcc
Q 033533 52 VGIMCESCN-------GKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG 95 (117)
Q Consensus 52 ~~~~C~~C~-------G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~G 95 (117)
....|..|. ..+.+.|.+|+-+-.+ ...||.|++.-
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~--------~~~Cp~C~s~~ 263 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI--------PKTCPQCGSED 263 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCC--------CCCCCCCCCCe
Confidence 456777777 3344677777654332 34677777653
No 132
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=27.40 E-value=1.3e+02 Score=17.57 Aligned_cols=35 Identities=34% Similarity=0.646 Sum_probs=22.5
Q ss_pred cCeeeCCCCCCCceEEeccCCcceeeCcccCCcce
Q 033533 62 KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY 96 (117)
Q Consensus 62 ~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Gl 96 (117)
+|.+.|..|+..=......+...+-.|......|.
T Consensus 3 ~g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~~ 37 (58)
T PF13408_consen 3 SGLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKGK 37 (58)
T ss_pred CCcEEcccCCcEeEEEECCCCceEEEcCCCcCCCC
Confidence 46678888877633332223445778888887776
No 133
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.87 E-value=89 Score=28.67 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=33.7
Q ss_pred cCCCCCCCcCeeeCCCCCCCceEEeccCCcceeeCcccCCcce-eeCCCCccce
Q 033533 54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY-VLCSKCKVFK 106 (117)
Q Consensus 54 ~~C~~C~G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Gl-v~Cp~C~G~~ 106 (117)
..|..|+- ...|+.|+++=..+... ...+|+.|+-.-. ..||.|.+..
T Consensus 384 l~C~~Cg~--~~~C~~C~~~L~~h~~~---~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 384 LACARCRT--PARCRHCTGPLGLPSAG---GTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred eEhhhCcC--eeECCCCCCceeEecCC---CeeECCCCcCCCcCccCCCCcCCc
Confidence 57888853 36999999985554322 2679999987542 1399998764
No 134
>PRK05580 primosome assembly protein PriA; Validated
Probab=26.84 E-value=67 Score=29.17 Aligned_cols=48 Identities=21% Similarity=0.518 Sum_probs=33.5
Q ss_pred cCCCCCCCcCeeeCCCCCCCceEEeccCCcceeeCcccCCccee--eCCCCccce
Q 033533 54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV--LCSKCKVFK 106 (117)
Q Consensus 54 ~~C~~C~G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv--~Cp~C~G~~ 106 (117)
..|..|+- ...|+.|+++=..+.. .....|+.|+-.-.+ .||.|.+..
T Consensus 382 ~~C~~Cg~--~~~C~~C~~~l~~h~~---~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 382 LLCRDCGW--VAECPHCDASLTLHRF---QRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred eEhhhCcC--ccCCCCCCCceeEECC---CCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 56888863 2589999996443332 225789999987654 499997765
No 135
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=25.97 E-value=60 Score=19.54 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=6.0
Q ss_pred eeeCcccCCc
Q 033533 85 YRRCPTCRAV 94 (117)
Q Consensus 85 ~~~Cp~C~G~ 94 (117)
..+|+.|+.+
T Consensus 19 ~irC~~CG~r 28 (44)
T smart00659 19 VVRCRECGYR 28 (44)
T ss_pred ceECCCCCce
Confidence 4567766654
No 136
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=25.85 E-value=31 Score=29.26 Aligned_cols=40 Identities=38% Similarity=0.631 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCcccCccccccccccCCCCCCCcCeeeCCCCCCCceEEe
Q 033533 28 SRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVK 78 (117)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSGkv~~ 78 (117)
.|=|||.=-|+.|=- ...+.|..|+|+| |..|+++|++..
T Consensus 243 ~R~rpsyFPFTePS~--------Evdv~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 243 IRFRPSYFPFTEPSA--------EVDVSCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred EEecCCCCCCCCCce--------EEEEEEeccCCCc---ccccCCCCceEE
Confidence 344555544554422 3557788899887 889999998764
No 137
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=25.67 E-value=62 Score=20.30 Aligned_cols=29 Identities=34% Similarity=0.662 Sum_probs=17.2
Q ss_pred eeCCCCCCC-ceEEeccCCcceeeCcccCC
Q 033533 65 LVCDFCGGQ-KTNVKAQNNRIYRRCPTCRA 93 (117)
Q Consensus 65 v~C~~C~GS-Gkv~~~~g~~~~~~Cp~C~G 93 (117)
+.|..|+.. |.....+.....-+|+.|+.
T Consensus 23 LIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 23 LICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred EECcccchhhcccccccCCceEEEcCCCCC
Confidence 567777665 44433334445677888864
No 138
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=25.55 E-value=41 Score=16.58 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 033533 67 CDFCGGQ 73 (117)
Q Consensus 67 C~~C~GS 73 (117)
|..|+..
T Consensus 3 C~~C~~~ 9 (18)
T PF00098_consen 3 CFNCGEP 9 (18)
T ss_dssp CTTTSCS
T ss_pred CcCCCCc
Confidence 3333333
No 139
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=25.52 E-value=48 Score=23.45 Aligned_cols=7 Identities=43% Similarity=1.402 Sum_probs=3.7
Q ss_pred CcccCCc
Q 033533 88 CPTCRAV 94 (117)
Q Consensus 88 Cp~C~G~ 94 (117)
||.|++.
T Consensus 89 CP~Cgs~ 95 (113)
T PRK12380 89 CPHCHGE 95 (113)
T ss_pred CcCCCCC
Confidence 5555543
No 140
>KOG4623 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.76 E-value=31 Score=31.41 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=19.3
Q ss_pred eeeCCCCCCCceEEeccCCcceeeCcccC
Q 033533 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (117)
Q Consensus 64 ~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~ 92 (117)
.|.|++|+++.++.-. ++....||.|.
T Consensus 28 ~VnCwFCnk~t~vpyq--~rNswTCpsCE 54 (611)
T KOG4623|consen 28 TVNCWFCNKKTEVPYQ--GRNSWTCPSCE 54 (611)
T ss_pred eEEEEEecCcceeccC--CCCCCcCCcHH
Confidence 3789999999887532 23356888884
No 141
>PHA00626 hypothetical protein
Probab=23.06 E-value=53 Score=21.49 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=9.4
Q ss_pred eCcccCC-cceeeCCCC
Q 033533 87 RCPTCRA-VGYVLCSKC 102 (117)
Q Consensus 87 ~Cp~C~G-~Glv~Cp~C 102 (117)
+|..|++ ..+-.|+.|
T Consensus 13 rcg~cr~~snrYkCkdC 29 (59)
T PHA00626 13 KEKTMRGWSDDYVCCDC 29 (59)
T ss_pred eeceecccCcceEcCCC
Confidence 5556665 455556666
No 142
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=22.89 E-value=59 Score=21.08 Aligned_cols=10 Identities=20% Similarity=0.926 Sum_probs=3.5
Q ss_pred eeCCCCCCCc
Q 033533 65 LVCDFCGGQK 74 (117)
Q Consensus 65 v~C~~C~GSG 74 (117)
+.|-.|+...
T Consensus 31 IlCNDC~~~s 40 (61)
T PF14599_consen 31 ILCNDCNAKS 40 (61)
T ss_dssp EEESSS--EE
T ss_pred EECCCCCCcc
Confidence 4444444433
No 143
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.52 E-value=64 Score=17.65 Aligned_cols=25 Identities=32% Similarity=0.812 Sum_probs=11.0
Q ss_pred eCCCCCCCceEEeccCCcceeeCcccCC
Q 033533 66 VCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (117)
Q Consensus 66 ~C~~C~GSGkv~~~~g~~~~~~Cp~C~G 93 (117)
-|+.|.+.-..... .....|+.|+-
T Consensus 5 fC~~CG~~t~~~~~---g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG---GWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SS---SS-EEESSSS-
T ss_pred ccCcCCccccCCCC---cCEeECCCCcC
Confidence 47777776554422 23567777753
No 144
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=22.49 E-value=83 Score=18.46 Aligned_cols=7 Identities=43% Similarity=1.113 Sum_probs=3.3
Q ss_pred eCCCCCC
Q 033533 66 VCDFCGG 72 (117)
Q Consensus 66 ~C~~C~G 72 (117)
.|+.|+.
T Consensus 5 ~C~~CG~ 11 (46)
T PRK00398 5 KCARCGR 11 (46)
T ss_pred ECCCCCC
Confidence 3445544
No 145
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=22.37 E-value=44 Score=28.88 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=6.8
Q ss_pred eCCCCCCCceEE
Q 033533 66 VCDFCGGQKTNV 77 (117)
Q Consensus 66 ~C~~C~GSGkv~ 77 (117)
+|+.|+|+|++.
T Consensus 392 ~Cp~C~G~G~v~ 403 (414)
T TIGR00757 392 VCPHCSGTGIVK 403 (414)
T ss_pred CCCCCcCeeEEc
Confidence 455566666554
No 146
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=22.08 E-value=1e+02 Score=24.15 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=15.8
Q ss_pred cceeeCcccCCcceee---------CCCCc--cceeEee
Q 033533 83 RIYRRCPTCRAVGYVL---------CSKCK--VFKCVTF 110 (117)
Q Consensus 83 ~~~~~Cp~C~G~Glv~---------Cp~C~--G~~~~~~ 110 (117)
.+...|..|-|..... |..|. |.-|.-|
T Consensus 49 ~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~G~~c~pf 87 (175)
T PF15446_consen 49 DFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKPGPSCKPF 87 (175)
T ss_pred ceEEechhhcChhhcccCCCCCCCcccccCCCCCCCccc
Confidence 4566777776655443 66665 4444444
No 147
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=22.07 E-value=58 Score=18.08 Aligned_cols=20 Identities=20% Similarity=0.630 Sum_probs=11.6
Q ss_pred eeCcccCCcceeeCCCCccc
Q 033533 86 RRCPTCRAVGYVLCSKCKVF 105 (117)
Q Consensus 86 ~~Cp~C~G~Glv~Cp~C~G~ 105 (117)
..|..|+..+.-+||.|.-.
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~ 22 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGAR 22 (30)
T ss_dssp EEETSSSSEESEE-TTT--E
T ss_pred CCCccCcCCCEEECCCcCCc
Confidence 45677777777777777543
No 148
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.78 E-value=89 Score=22.65 Aligned_cols=7 Identities=57% Similarity=1.773 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 033533 67 CDFCGGQ 73 (117)
Q Consensus 67 C~~C~GS 73 (117)
|+.|++.
T Consensus 1 CPvCg~~ 7 (113)
T PF09862_consen 1 CPVCGGE 7 (113)
T ss_pred CCCCCCc
Confidence 4444443
No 149
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=20.89 E-value=68 Score=22.70 Aligned_cols=9 Identities=44% Similarity=1.335 Sum_probs=4.5
Q ss_pred eCcccCCcc
Q 033533 87 RCPTCRAVG 95 (117)
Q Consensus 87 ~Cp~C~G~G 95 (117)
.||.|++..
T Consensus 88 ~CP~Cgs~~ 96 (115)
T TIGR00100 88 RCPKCHGIM 96 (115)
T ss_pred cCcCCcCCC
Confidence 455555443
No 150
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=20.83 E-value=62 Score=21.41 Aligned_cols=32 Identities=22% Similarity=0.679 Sum_probs=14.8
Q ss_pred eCCCCCCCceEEec-c---CCcceeeCcccCCccee
Q 033533 66 VCDFCGGQKTNVKA-Q---NNRIYRRCPTCRAVGYV 97 (117)
Q Consensus 66 ~C~~C~GSGkv~~~-~---g~~~~~~Cp~C~G~Glv 97 (117)
+|..|+.+-.-... . .+....+||.|+-..++
T Consensus 6 TC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlI 41 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLI 41 (66)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES
T ss_pred EcCCCCCccceeeCHHHHhCCeEEEECCCCcceeee
Confidence 57777655332211 1 23356677777665554
No 151
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=20.73 E-value=52 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=14.9
Q ss_pred eeeCcccCCccee-eCCCCccce
Q 033533 85 YRRCPTCRAVGYV-LCSKCKVFK 106 (117)
Q Consensus 85 ~~~Cp~C~G~Glv-~Cp~C~G~~ 106 (117)
..+|+.|+.-=+. .||.|.|.-
T Consensus 5 ~rkC~~cg~YTLke~Cp~CG~~t 27 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVCGGDT 27 (59)
T ss_pred hhcCcCCCceeecccCCCCCCcc
Confidence 4567777777666 588886643
No 152
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=20.48 E-value=56 Score=22.96 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=3.9
Q ss_pred eeCcccCCcc
Q 033533 86 RRCPTCRAVG 95 (117)
Q Consensus 86 ~~Cp~C~G~G 95 (117)
.+|..|+...
T Consensus 71 ~~C~~Cg~~~ 80 (113)
T PF01155_consen 71 ARCRDCGHEF 80 (113)
T ss_dssp EEETTTS-EE
T ss_pred EECCCCCCEE
Confidence 3444444433
No 153
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=20.01 E-value=99 Score=20.79 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=6.5
Q ss_pred CCcceeeCCCC
Q 033533 92 RAVGYVLCSKC 102 (117)
Q Consensus 92 ~G~Glv~Cp~C 102 (117)
.+.|.+.|..|
T Consensus 42 ~~~~~~~C~~C 52 (81)
T PF05129_consen 42 EGIGILSCRVC 52 (81)
T ss_dssp TTEEEEEESSS
T ss_pred CCEEEEEecCC
Confidence 45566666666
Done!