BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033534
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana
GN=MUB6 PE=1 SV=1
Length = 119
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/119 (68%), Positives = 100/119 (84%), Gaps = 2/119 (1%)
Query: 1 MAGE-DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH 59
MAGE D IELKFRLADG DIGPSK++ + TV+SLKEK+IS+WPK+KEN PKTVN+++LI+
Sbjct: 1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60
Query: 60 AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSS-KSRCLCSIL 117
AGKILE+N T+AESRLPV ELPG ITMH+VLR DKK EKL +D K+RC+C+IL
Sbjct: 61 AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119
>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp.
japonica GN=MUB3 PE=3 SV=1
Length = 119
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 97/117 (82%), Gaps = 1/117 (0%)
Query: 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61
G++ IE+KFRL DG DIGPSK+ P+TTV++LKE I++RWP++KE PKTVN+++LI+AG
Sbjct: 3 GGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAG 62
Query: 62 KILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSK-SRCLCSIL 117
+ILE+N T+AESR+PV E+PG ITMHVV+RP PDK EK L++S K +RC C+IL
Sbjct: 63 RILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana
GN=MUB5 PE=1 SV=1
Length = 120
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 93/120 (77%), Gaps = 3/120 (2%)
Query: 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
M EDLIELKFRLADG DIGPSK+S TVASLKEKII++WPK+KEN PK +N V+LI+
Sbjct: 1 MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60
Query: 61 GKILEDNMTIAESR--LPVVELPGTAITMHVVLRPSLPDKKGEKLLSD-SSKSRCLCSIL 117
GKILE+N T++E+R + + ELPG TMHVVLRP L +KK EKL +D KS C+C IL
Sbjct: 61 GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120
>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp.
japonica GN=MUB1 PE=3 SV=1
Length = 119
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 87/120 (72%), Gaps = 4/120 (3%)
Query: 1 MAG--EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI 58
M+G ++ E+KFRL DG DIGP ++ +TVA+LKE I+++WPK+KE GP+TVN+++LI
Sbjct: 1 MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI 60
Query: 59 HAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKS-RCLCSIL 117
+AGKILE+N T++E + P+ + G TMHVV+R DK+ K+++ K RC CSI+
Sbjct: 61 NAGKILENNKTLSECKSPICDFSGLT-TMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119
>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana
GN=MUB4 PE=1 SV=1
Length = 120
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 89/121 (73%), Gaps = 5/121 (4%)
Query: 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
M EDL+ELKFRL DG+D+GP ++SPT TV+ LKE+I+S WPK+K+ PK+ ++++LI+A
Sbjct: 1 MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60
Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLRPS----LPDKKGEKLLSDSSKSRCLCSI 116
GKILE+ T+A+ + P +LP + ITMHVV++ S P+KK EK + +S C C+I
Sbjct: 61 GKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEA-PQRSFCSCTI 119
Query: 117 L 117
+
Sbjct: 120 M 120
>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana
GN=MUB1 PE=1 SV=1
Length = 117
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL 64
+ +E+KFRL DG+DIGP F TTV++LKE +IS WP+EKENGPKTV V+LI AGK+L
Sbjct: 6 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVL 65
Query: 65 EDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKSRCLCSIL 117
E++ T+ + R PV L G TMHV+++ + +K+ +K D ++C+CS++
Sbjct: 66 ENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE-KKPKGDPKMNKCVCSVM 117
>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana
GN=MUB2 PE=1 SV=1
Length = 124
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
Query: 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI 63
+D +E+KFRL DG+DIGP F TTVA+LKE ++++WP++KENGPKTV +V+LI AG+I
Sbjct: 5 KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLP--DKKGEKLLSDSSKSRCLC 114
LE+N T+ + R PV G TMHV+++ + +KK +K D +++C+C
Sbjct: 65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVC 117
>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana
GN=MUB3 PE=1 SV=1
Length = 118
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Query: 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
M E+ I++KFRL DG+DIGP ++S +TV LK++++S WPK K PK +N V+LI +
Sbjct: 1 MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60
Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKSR-CLCSIL 117
GKILE+N T+ + + P ++ G I MHVV++PSL K EK + + K+ C C+IL
Sbjct: 61 GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118
>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp.
japonica GN=MUB4 PE=2 SV=2
Length = 135
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 8/113 (7%)
Query: 10 KFRLADGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNM 68
KFRL DG+DIGP + + TTVA+LK+++++ WPK+K PKT N+V+LI GKILE++
Sbjct: 26 KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85
Query: 69 TIAESRLPVVELPGTAITMHVVLRPSL----PDKKGEKLLSDSSKSRCLCSIL 117
IA+ R P +LP TAITMHVV++PS PDKK KL +RC C+IL
Sbjct: 86 NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKL---PKTTRCSCTIL 135
>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp.
japonica GN=MUB2 PE=2 SV=1
Length = 126
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL 64
+ +E++FRL DG+DIGPS TTV +LKE +++RWP+ KE P+TVN+V +I+AG++L
Sbjct: 12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71
Query: 65 EDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKSR--CLCSIL 117
E+N T+AESR E P ITMHVV+R S P+++ ++ R C C+IL
Sbjct: 72 ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIGCGCTIL 126
>sp|Q5BJT2|UBL3_RAT Ubiquitin-like protein 3 OS=Rattus norvegicus GN=Ubl3 PE=2 SV=1
Length = 117
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
D+I L+ L G FSP + + + + + WP + +E + N ++LI+ G+
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSL--PDKKGEKLLSDSSKSRCLCSIL 117
L N+T+ +LP G MH+V R +L P+ +G++ + +S C C IL
Sbjct: 67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 117
>sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 OS=Mus musculus GN=Ubl3 PE=1 SV=1
Length = 117
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
D+I L+ L G FSP + + + + + WP + +E + N ++LI+ G+
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSL--PDKKGEKLLSDSSKSRCLCSIL 117
L N+T+ +LP G MH+V R +L P+ +G++ + +S C C IL
Sbjct: 67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 117
>sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 OS=Homo sapiens GN=UBL3 PE=1 SV=1
Length = 117
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
D+I L+ L G FSP + + + + + WP + +E + N ++LI+ G+
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSL--PDKKGEKLLSDSSKSRCLCSIL 117
L N+T+ +LP G MH+V R +L P+ +G++ + +S C C IL
Sbjct: 67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 117
>sp|Q2TA46|UBL3_BOVIN Ubiquitin-like protein 3 OS=Bos taurus GN=UBL3 PE=3 SV=1
Length = 117
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
D+I L+ L G FSP + + + + + WP + +E + N ++LI+ G+
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSL--PDKKGEKLLSDSSKSRCLCSIL 117
L N+T+ +LP G MH+V R +L P+ +G++ + +S C C IL
Sbjct: 67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 117
>sp|P16709|UBIL_NPVAC Ubiquitin-like protein OS=Autographa californica nuclear
polyhedrosis virus GN=V-UBI PE=3 SV=2
Length = 77
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P TVA LK+KI +KE P V+ +LI AGK LED+ T+A+ +
Sbjct: 19 PAETVADLKQKI-----ADKEGVP--VDQQRLIFAGKQLEDSKTMADYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHMVLR 72
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 19/88 (21%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P TV +K+KI +KE P V+ +LI+AGK LED T+A+ +
Sbjct: 19 PGDTVGQVKQKI-----ADKEGVP--VDQQRLIYAGKQLEDAQTLADYNIQ------KES 65
Query: 86 TMHVVLRPSLPDKKGEKLLSDSSKSRCL 113
T+H+VLR + G L K RCL
Sbjct: 66 TLHMVLRL----RGGNGL--RKGKRRCL 87
>sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1
SV=2
Length = 373
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
+ L + G D +P +TV KE I K NG V N +LI++GKIL+D
Sbjct: 1 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAI------NKANG-IPVANQRLIYSGKILKD 53
Query: 67 NMTI 70
+ T+
Sbjct: 54 DQTV 57
>sp|Q4KMA2|RD23B_RAT UV excision repair protein RAD23 homolog B OS=Rattus norvegicus
GN=Rad23b PE=1 SV=1
Length = 415
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
P TV +LKEKI S EK V +LI+AGKIL D+ + E ++
Sbjct: 19 PEETVKALKEKIES----EKGKDAFPVAGQKLIYAGKILSDDTALKEYKI 64
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus
GN=RAD23B PE=2 SV=1
Length = 408
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
P TV +LKEKI S EK V +LI+AGKIL D+ + E ++
Sbjct: 19 PDETVRALKEKIES----EKGKDAFPVAGQKLIYAGKILNDDTALKEYKI 64
>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens
GN=RAD23B PE=1 SV=1
Length = 409
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
P TV +LKEKI S EK V +LI+AGKIL D+ + E ++
Sbjct: 19 PEETVKALKEKIES----EKGKDAFPVAGQKLIYAGKILNDDTALKEYKI 64
>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B OS=Mus musculus
GN=Rad23b PE=1 SV=2
Length = 416
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
P TV +LKEKI S EK V +LI+AGKIL D+ + E ++
Sbjct: 19 PEETVKALKEKIES----EKGKDAFPVAGQKLIYAGKILSDDTALKEYKI 64
>sp|Q01740|FMO1_HUMAN Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Homo sapiens
GN=FMO1 PE=2 SV=3
Length = 532
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--GKILEDNMTIAESRLPVVELPGT 83
PT V L E+ I+ W L HA G I ED + E L ELPG
Sbjct: 248 PTPIVTWLMERKINNW---------------LNHANYGLIPEDRTQLKEFVLND-ELPGR 291
Query: 84 AITMHVVLRPSLPD-KKGEKLLSDSSK 109
IT V +RPS+ + K+ + +++SK
Sbjct: 292 IITGKVFIRPSIKEVKENSVIFNNTSK 318
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
+ P TV LKEKI EK V +LI+AGKIL D++ I + R+
Sbjct: 18 RMEPDETVKVLKEKI----EAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRI 66
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus
GN=RAD23A PE=2 SV=1
Length = 362
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
+ P TV LKEKI EK V +LI+AGKIL D++ I + R+
Sbjct: 18 RMEPDETVKVLKEKI----EAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRI 66
>sp|Q12285|MDY2_YEAST Ubiquitin-like protein MDY2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MDY2 PE=1 SV=1
Length = 212
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
FSP+ T+ +K+ +IS E ++ ++L+ GK+L DN+ +++ ++ P
Sbjct: 92 FSPSDTILQIKQHLIS------EEKASHISEIKLLLKGKVLHDNLFLSDLKV----TPAN 141
Query: 84 AITMHVVLRPS 94
+ T+ V+++P+
Sbjct: 142 S-TITVMIKPN 151
>sp|Q3AK05|Y1323_SYNSC UPF0182 protein Syncc9605_1323 OS=Synechococcus sp. (strain CC9605)
GN=Syncc9605_1323 PE=3 SV=1
Length = 914
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 16/55 (29%)
Query: 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
PS+FSPT ++E G T+ NV++ +G +LE N + + R+
Sbjct: 372 PSRFSPT----------------DREEGASTLENVRIWDSGPLLEANRQLQQLRV 410
>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A OS=Mus musculus
GN=Rad23a PE=1 SV=2
Length = 363
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72
+ P TV LKEKI EK V +LI+AGKIL D++ I E
Sbjct: 18 RMEPDETVKVLKEKI----EAEKGRDAFPVAGQKLIYAGKILSDDVPIKE 63
>sp|P16549|FMO1_PIG Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Sus scrofa
GN=FMO1 PE=1 SV=3
Length = 532
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 61 GKILEDNMTIAESRLPVV--ELPGTAITMHVVLRPSLPDKKGEKLLSDSS 108
G I ED + + E PV+ ELPG IT V+++PS+ + K ++ +SS
Sbjct: 270 GLIPEDRIQLRE---PVLNDELPGRIITGKVLIKPSIKEVKENSVVFNSS 316
>sp|B3DXK2|DER_METI4 GTPase Der OS=Methylacidiphilum infernorum (isolate V4) GN=der PE=3
SV=2
Length = 460
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 30 VASLKEKIISRWPKEKEN---GPKT-VNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
+ L EKI S +E+EN P T + + +AGK N I ESRL V E PGT
Sbjct: 151 INQLLEKIFSLGAEERENPIFAPSTRIAVIGQPNAGKSSLINSLIGESRLVVHEEPGT 208
>sp|P62979|RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A
PE=1 SV=2
Length = 156
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P62978|RS27A_CAVPO Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A
PE=1 SV=2
Length = 156
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P62992|RS27A_BOVIN Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1
SV=2
Length = 156
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P62982|RS27A_RAT Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus
GN=Rps27a PE=1 SV=2
Length = 156
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P62983|RS27A_MOUSE Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a
PE=1 SV=2
Length = 156
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P0CG68|UBC_PIG Polyubiquitin-C OS=Sus scrofa GN=UBC PE=2 SV=1
Length = 533
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI +EKE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKGKI-----QEKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P0CH28|UBC_BOVIN Polyubiquitin-C OS=Bos taurus GN=UBC PE=1 SV=1
Length = 690
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI +EKE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKGKI-----QEKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P79781|RS27A_CHICK Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A
PE=2 SV=3
Length = 156
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|O84007|GATB_CHLTR Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=gatB PE=3
SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80
P K P T RW EK+ KTV L+ + ED M E LPV+++
Sbjct: 248 PKKVVPAATY---------RWDPEKK---KTV----LMRLKERAEDYMYFVEPDLPVLQI 291
Query: 81 PGTAITMHVVLRPSLPDKKGEKLLSDSSKSRCLCSIL 117
T I P LP K + ++D + L IL
Sbjct: 292 TETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMIL 328
>sp|Q5ZJI9|UBAC1_CHICK Ubiquitin-associated domain-containing protein 1 OS=Gallus gallus
GN=UBAC1 PE=2 SV=1
Length = 408
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILEDNMTIAESRL 75
TTV LKE+ + PKTV + +LIHA K+L D+ T+ E +
Sbjct: 34 TTVEKLKERCLKHCVPGSLEDPKTVTHHKLIHATSEKVLTDSKTVLEENI 83
>sp|P68200|RS27A_ICTPU Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus
GN=rps27a PE=2 SV=2
Length = 156
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,229,171
Number of Sequences: 539616
Number of extensions: 1674546
Number of successful extensions: 3564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 3427
Number of HSP's gapped (non-prelim): 218
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)