Query 033534
Match_columns 117
No_of_seqs 101 out of 724
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13881 Rad60-SLD_2: Ubiquiti 100.0 2.3E-32 5.1E-37 190.0 12.2 111 5-115 1-111 (111)
2 cd01814 NTGP5 Ubiquitin-like N 100.0 6.3E-32 1.4E-36 187.6 9.0 111 4-114 2-113 (113)
3 cd01807 GDX_N ubiquitin-like d 99.8 4.9E-20 1.1E-24 118.5 7.9 74 7-94 1-74 (74)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 7.6E-20 1.6E-24 117.7 8.0 74 7-96 1-74 (74)
5 cd01790 Herp_N Homocysteine-re 99.8 8.7E-20 1.9E-24 120.2 7.4 75 6-91 1-78 (79)
6 cd01802 AN1_N ubiquitin-like d 99.8 1.5E-19 3.2E-24 124.0 8.8 78 5-96 26-103 (103)
7 cd01797 NIRF_N amino-terminal 99.8 2.6E-19 5.7E-24 117.1 7.8 76 7-95 1-77 (78)
8 PTZ00044 ubiquitin; Provisiona 99.8 6E-19 1.3E-23 113.2 8.0 76 7-96 1-76 (76)
9 cd01794 DC_UbP_C dendritic cel 99.8 4.4E-19 9.4E-24 113.9 6.8 69 9-91 1-69 (70)
10 cd01810 ISG15_repeat2 ISG15 ub 99.8 6.7E-19 1.5E-23 113.3 7.4 74 9-96 1-74 (74)
11 cd01798 parkin_N amino-termina 99.8 9.4E-19 2E-23 111.2 7.0 70 9-92 1-70 (70)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 1.8E-18 3.9E-23 112.0 8.0 71 7-91 2-72 (73)
13 cd01806 Nedd8 Nebb8-like ubiq 99.8 4.1E-18 8.8E-23 108.6 8.4 76 7-96 1-76 (76)
14 cd01803 Ubiquitin Ubiquitin. U 99.8 5.9E-18 1.3E-22 107.9 8.0 76 7-96 1-76 (76)
15 cd01804 midnolin_N Ubiquitin-l 99.7 7.9E-18 1.7E-22 109.7 8.3 76 6-96 1-76 (78)
16 cd01808 hPLIC_N Ubiquitin-like 99.7 8.5E-18 1.8E-22 107.2 7.5 71 7-92 1-71 (71)
17 cd01805 RAD23_N Ubiquitin-like 99.7 2.6E-17 5.6E-22 105.7 8.3 75 7-93 1-75 (77)
18 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.7E-17 3.8E-22 108.3 7.5 74 7-94 3-78 (80)
19 cd01809 Scythe_N Ubiquitin-lik 99.7 3.2E-17 6.9E-22 103.5 7.8 72 7-92 1-72 (72)
20 KOG0005 Ubiquitin-like protein 99.7 7.3E-18 1.6E-22 105.7 4.0 70 7-90 1-70 (70)
21 PF00240 ubiquitin: Ubiquitin 99.7 6.2E-17 1.4E-21 101.8 7.0 68 12-93 1-68 (69)
22 cd01796 DDI1_N DNA damage indu 99.7 7.8E-17 1.7E-21 103.2 6.7 67 9-89 1-69 (71)
23 cd01800 SF3a120_C Ubiquitin-li 99.7 8.9E-17 1.9E-21 104.0 7.0 71 14-98 5-75 (76)
24 KOG0004 Ubiquitin/40S ribosoma 99.7 7.6E-17 1.6E-21 117.3 4.2 80 7-100 1-80 (156)
25 KOG0003 Ubiquitin/60s ribosoma 99.7 2E-17 4.4E-22 114.5 0.7 75 8-96 2-76 (128)
26 cd01763 Sumo Small ubiquitin-r 99.6 2.3E-15 5E-20 99.9 9.3 80 3-96 8-87 (87)
27 cd01812 BAG1_N Ubiquitin-like 99.6 1.7E-15 3.7E-20 95.5 6.9 70 7-91 1-70 (71)
28 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 9.2E-16 2E-20 100.1 5.2 58 25-92 18-75 (75)
29 TIGR00601 rad23 UV excision re 99.6 1E-14 2.2E-19 119.5 8.5 68 7-79 1-68 (378)
30 KOG0010 Ubiquitin-like protein 99.5 1E-14 2.2E-19 121.8 7.3 79 6-99 15-93 (493)
31 cd01813 UBP_N UBP ubiquitin pr 99.5 1.9E-14 4.2E-19 93.1 6.9 68 8-90 2-72 (74)
32 smart00213 UBQ Ubiquitin homol 99.5 9.7E-14 2.1E-18 84.9 6.2 64 7-79 1-64 (64)
33 cd01799 Hoil1_N Ubiquitin-like 99.4 6.8E-13 1.5E-17 86.2 7.1 66 11-91 7-74 (75)
34 cd01769 UBL Ubiquitin-like dom 99.3 4.2E-12 9.1E-17 78.5 6.8 67 11-91 2-68 (69)
35 KOG0011 Nucleotide excision re 99.3 2.6E-12 5.6E-17 103.2 6.9 67 7-79 1-67 (340)
36 PF11976 Rad60-SLD: Ubiquitin- 99.2 2.3E-11 4.9E-16 77.1 6.0 72 7-91 1-72 (72)
37 KOG4248 Ubiquitin-like protein 99.2 3.8E-11 8.2E-16 107.2 6.2 76 7-97 3-78 (1143)
38 cd01795 USP48_C USP ubiquitin- 99.0 4.9E-10 1.1E-14 76.8 6.0 62 21-95 18-80 (107)
39 cd01789 Alp11_N Ubiquitin-like 99.0 1.6E-09 3.5E-14 71.5 8.3 72 7-91 2-80 (84)
40 KOG0001 Ubiquitin and ubiquiti 99.0 9.4E-09 2E-13 62.6 8.8 72 9-94 2-73 (75)
41 PLN02560 enoyl-CoA reductase 98.9 7.9E-09 1.7E-13 82.8 7.8 77 7-97 1-86 (308)
42 PF10302 DUF2407: DUF2407 ubiq 98.8 2.5E-08 5.4E-13 67.9 8.0 59 9-73 3-64 (97)
43 cd01788 ElonginB Ubiquitin-lik 98.8 2.1E-08 4.6E-13 70.1 7.0 79 6-93 2-81 (119)
44 cd01801 Tsc13_N Ubiquitin-like 98.8 2.5E-08 5.4E-13 64.5 6.0 53 25-89 20-74 (77)
45 PF14560 Ubiquitin_2: Ubiquiti 98.6 2.7E-07 5.8E-12 60.8 7.0 70 7-90 2-81 (87)
46 KOG0006 E3 ubiquitin-protein l 98.4 6.3E-07 1.4E-11 72.7 6.4 74 7-93 3-77 (446)
47 cd00196 UBQ Ubiquitin-like pro 98.4 2.1E-06 4.6E-11 49.1 7.0 65 13-91 4-68 (69)
48 PF11543 UN_NPL4: Nuclear pore 98.3 3.6E-06 7.8E-11 55.3 6.2 71 5-90 3-78 (80)
49 KOG4495 RNA polymerase II tran 98.0 1.4E-05 3E-10 54.7 5.4 75 6-89 2-79 (110)
50 PF00789 UBX: UBX domain; Int 97.8 0.00024 5.3E-09 45.7 8.1 74 3-89 3-80 (82)
51 cd01811 OASL_repeat1 2'-5' oli 97.7 0.00016 3.4E-09 47.4 5.7 62 7-77 1-67 (80)
52 cd01770 p47_UBX p47-like ubiqu 97.6 0.00072 1.6E-08 44.1 8.3 68 4-78 2-72 (79)
53 KOG1769 Ubiquitin-like protein 97.6 0.0009 1.9E-08 45.8 8.8 78 5-96 19-96 (99)
54 cd01774 Faf1_like2_UBX Faf1 ik 97.4 0.0019 4E-08 42.8 8.2 66 5-79 3-78 (85)
55 cd01772 SAKS1_UBX SAKS1-like U 97.4 0.002 4.3E-08 41.8 7.8 67 4-79 2-73 (79)
56 smart00166 UBX Domain present 97.3 0.002 4.4E-08 41.6 7.6 68 4-79 2-74 (80)
57 PF08817 YukD: WXG100 protein 97.3 0.00084 1.8E-08 43.4 5.5 76 6-89 2-78 (79)
58 cd01767 UBX UBX (ubiquitin reg 97.1 0.0032 7E-08 40.2 6.9 63 6-77 2-69 (77)
59 KOG1872 Ubiquitin-specific pro 97.1 0.0014 2.9E-08 55.4 6.4 63 15-91 11-74 (473)
60 PF13019 Telomere_Sde2: Telome 97.1 0.0047 1E-07 45.7 8.3 85 7-100 1-92 (162)
61 cd01771 Faf1_UBX Faf1 UBX doma 96.0 0.086 1.9E-06 34.4 8.1 68 3-79 1-73 (80)
62 cd01773 Faf1_like1_UBX Faf1 ik 96.0 0.059 1.3E-06 35.6 7.2 68 3-79 2-74 (82)
63 COG5227 SMT3 Ubiquitin-like pr 96.0 0.01 2.2E-07 40.4 3.5 66 6-79 24-89 (103)
64 KOG4583 Membrane-associated ER 95.9 0.0031 6.7E-08 51.7 1.0 83 5-96 8-91 (391)
65 KOG0013 Uncharacterized conser 95.8 0.02 4.3E-07 44.2 4.8 64 8-79 147-211 (231)
66 KOG3493 Ubiquitin-like protein 95.7 0.0032 6.9E-08 40.3 0.3 65 7-79 2-66 (73)
67 COG5417 Uncharacterized small 95.3 0.24 5.1E-06 32.6 7.9 70 6-79 6-76 (81)
68 PF15044 CLU_N: Mitochondrial 95.1 0.063 1.4E-06 34.7 4.8 58 24-93 1-59 (76)
69 cd00754 MoaD Ubiquitin domain 93.5 0.5 1.1E-05 29.6 6.5 66 15-94 13-78 (80)
70 KOG3206 Alpha-tubulin folding 93.2 0.36 7.8E-06 37.4 6.3 57 22-91 17-80 (234)
71 PF09379 FERM_N: FERM N-termin 92.9 1 2.3E-05 28.1 7.3 71 11-92 1-77 (80)
72 KOG2086 Protein tyrosine phosp 92.5 0.28 6.2E-06 40.7 5.2 67 5-78 304-373 (380)
73 TIGR01682 moaD molybdopterin c 92.1 0.62 1.4E-05 29.6 5.5 57 14-79 12-69 (80)
74 TIGR01687 moaD_arch MoaD famil 91.5 0.82 1.8E-05 29.5 5.7 70 15-94 13-86 (88)
75 KOG1639 Steroid reductase requ 91.3 0.55 1.2E-05 37.4 5.4 78 9-97 3-82 (297)
76 PF02597 ThiS: ThiS family; I 91.2 1 2.2E-05 27.8 5.7 60 21-93 15-74 (77)
77 smart00144 PI3K_rbd PI3-kinase 90.5 2.5 5.4E-05 28.8 7.5 82 5-93 16-105 (108)
78 PF11470 TUG-UBL1: GLUT4 regul 90.3 1.4 3.1E-05 27.8 5.6 58 14-79 4-61 (65)
79 PLN02799 Molybdopterin synthas 90.1 2.9 6.2E-05 26.6 7.2 56 15-79 16-71 (82)
80 PRK06437 hypothetical protein; 90.1 3.2 6.9E-05 25.9 7.5 50 13-79 6-56 (67)
81 cd00565 ThiS ThiaminS ubiquiti 86.5 5.2 0.00011 24.4 6.4 51 14-79 4-54 (65)
82 PF14453 ThiS-like: ThiS-like 86.5 2.3 5E-05 26.2 4.7 44 15-79 6-49 (57)
83 smart00295 B41 Band 4.1 homolo 84.3 3 6.6E-05 30.0 5.3 64 5-75 2-71 (207)
84 PRK06083 sulfur carrier protei 83.1 11 0.00023 24.8 7.4 63 1-79 11-73 (84)
85 cd06409 PB1_MUG70 The MUG70 pr 83.0 2.9 6.2E-05 27.8 4.3 33 8-41 2-34 (86)
86 PF06234 TmoB: Toluene-4-monoo 82.4 6.9 0.00015 26.1 5.9 54 22-79 19-77 (85)
87 TIGR01683 thiS thiamine biosyn 81.5 9.6 0.00021 23.1 6.3 51 14-79 3-53 (64)
88 PF08783 DWNN: DWNN domain; I 81.3 3.3 7.1E-05 26.8 3.9 32 9-40 1-33 (74)
89 PF08337 Plexin_cytopl: Plexin 78.1 13 0.00027 32.5 7.6 83 5-94 188-291 (539)
90 PF12754 Blt1: Cell-cycle cont 76.7 0.8 1.7E-05 37.2 0.0 69 5-76 77-160 (309)
91 cd06406 PB1_P67 A PB1 domain i 76.3 10 0.00022 25.0 5.1 45 8-62 4-48 (80)
92 COG5100 NPL4 Nuclear pore prot 75.8 11 0.00024 32.2 6.5 72 7-91 1-78 (571)
93 PF00794 PI3K_rbd: PI3-kinase 74.6 10 0.00022 25.3 5.1 81 4-91 14-101 (106)
94 PF11069 DUF2870: Protein of u 74.4 4.9 0.00011 27.5 3.4 42 56-100 3-44 (98)
95 PF00788 RA: Ras association ( 72.4 21 0.00045 22.4 6.3 59 6-69 2-69 (93)
96 cd01760 RBD Ubiquitin-like dom 71.7 9.9 0.00021 24.3 4.2 53 9-67 2-56 (72)
97 PF00564 PB1: PB1 domain; Int 71.4 17 0.00038 22.6 5.3 47 7-61 2-48 (84)
98 PRK08364 sulfur carrier protei 71.4 22 0.00047 22.1 8.4 43 21-79 17-59 (70)
99 PF02505 MCR_D: Methyl-coenzym 70.1 13 0.00029 27.3 5.0 55 4-73 65-120 (153)
100 cd06407 PB1_NLP A PB1 domain i 69.1 9.6 0.00021 24.8 3.8 32 10-41 2-33 (82)
101 PF14451 Ub-Mut7C: Mut7-C ubiq 68.9 20 0.00043 23.4 5.2 42 22-79 27-69 (81)
102 smart00666 PB1 PB1 domain. Pho 66.6 25 0.00055 21.8 5.3 45 7-60 2-46 (81)
103 PF02192 PI3K_p85B: PI3-kinase 66.6 5.8 0.00013 25.9 2.3 20 21-40 3-22 (78)
104 cd01787 GRB7_RA RA (RAS-associ 66.4 16 0.00034 24.4 4.4 62 7-73 3-68 (85)
105 PF10790 DUF2604: Protein of U 66.2 32 0.0007 22.1 6.0 69 14-93 3-72 (76)
106 cd01768 RA RA (Ras-associating 65.8 31 0.00067 21.7 5.7 49 16-69 11-65 (87)
107 PF10209 DUF2340: Uncharacteri 65.0 13 0.00028 26.4 4.0 54 23-78 21-100 (122)
108 KOG0007 Splicing factor 3a, su 64.6 3.5 7.6E-05 33.5 1.2 49 14-70 290-339 (341)
109 TIGR02958 sec_mycoba_snm4 secr 64.4 62 0.0013 27.4 8.7 81 8-97 4-85 (452)
110 TIGR03260 met_CoM_red_D methyl 61.4 24 0.00052 25.9 4.9 55 4-73 64-118 (150)
111 PRK06944 sulfur carrier protei 58.7 37 0.0008 20.2 6.8 57 14-92 5-61 (65)
112 smart00143 PI3K_p85B PI3-kinas 58.5 11 0.00023 24.8 2.4 20 21-40 3-22 (78)
113 PRK05659 sulfur carrier protei 57.2 40 0.00087 20.2 4.9 51 14-79 5-55 (66)
114 COG1551 CsrA RNA-binding globa 56.9 34 0.00075 22.1 4.5 35 4-39 15-49 (73)
115 PRK05863 sulfur carrier protei 55.8 45 0.00097 20.3 5.9 51 13-79 4-54 (65)
116 KOG4250 TANK binding protein k 53.9 48 0.001 30.0 6.4 48 11-66 319-366 (732)
117 cd05992 PB1 The PB1 domain is 51.4 23 0.0005 21.8 3.1 33 8-42 2-35 (81)
118 smart00455 RBD Raf-like Ras-bi 50.4 61 0.0013 20.3 5.1 49 9-65 2-52 (70)
119 KOG3391 Transcriptional co-rep 50.3 22 0.00048 25.9 3.2 65 27-98 61-142 (151)
120 PRK11130 moaD molybdopterin sy 48.3 64 0.0014 20.3 4.9 56 15-79 14-70 (81)
121 PF11148 DUF2922: Protein of u 47.8 54 0.0012 20.3 4.4 31 6-37 2-35 (69)
122 KOG1364 Predicted ubiquitin re 47.2 24 0.00051 29.3 3.3 65 8-79 279-348 (356)
123 COG4055 McrD Methyl coenzyme M 47.1 69 0.0015 23.7 5.4 54 5-73 74-128 (165)
124 PRK08053 sulfur carrier protei 46.7 65 0.0014 19.5 6.6 51 14-79 5-55 (66)
125 PF14533 USP7_C2: Ubiquitin-sp 46.2 1.2E+02 0.0025 22.9 6.8 48 21-73 37-90 (213)
126 KOG0012 DNA damage inducible p 45.5 43 0.00092 28.1 4.5 65 7-79 3-69 (380)
127 PF08154 NLE: NLE (NUC135) dom 43.9 75 0.0016 19.5 5.8 55 7-66 2-59 (65)
128 cd06411 PB1_p51 The PB1 domain 42.2 97 0.0021 20.2 5.1 33 22-61 11-43 (78)
129 PRK06488 sulfur carrier protei 41.9 77 0.0017 19.0 6.0 50 14-79 5-54 (65)
130 PF02196 RBD: Raf-like Ras-bin 41.2 89 0.0019 19.5 6.6 57 9-71 3-59 (71)
131 KOG2689 Predicted ubiquitin re 39.4 43 0.00093 27.1 3.6 35 5-40 209-243 (290)
132 PF02824 TGS: TGS domain; Int 39.3 67 0.0014 19.2 3.8 29 9-40 1-29 (60)
133 KOG4261 Talin [Cytoskeleton] 39.2 46 0.001 30.8 4.1 62 14-79 9-76 (1003)
134 cd06396 PB1_NBR1 The PB1 domai 39.2 61 0.0013 21.3 3.7 30 11-41 3-35 (81)
135 cd01776 Rin1_RA Ubiquitin doma 38.2 81 0.0018 21.1 4.2 78 8-93 3-86 (87)
136 PF04233 Phage_Mu_F: Phage Mu 36.8 17 0.00037 23.8 0.8 8 110-117 105-112 (112)
137 PF14941 OAF: Transcriptional 36.2 1E+02 0.0022 24.2 5.1 57 3-66 24-80 (240)
138 PRK11840 bifunctional sulfur c 35.5 1.6E+02 0.0035 24.2 6.4 51 14-79 5-55 (326)
139 PRK07440 hypothetical protein; 35.3 1.1E+02 0.0024 19.0 7.4 50 15-79 10-59 (70)
140 TIGR02008 fdx_plant ferredoxin 34.0 1.1E+02 0.0024 20.0 4.5 29 6-35 2-30 (97)
141 PF14191 YodL: YodL-like 33.8 85 0.0019 21.4 3.9 39 23-61 45-83 (103)
142 KOG2561 Adaptor protein NUB1, 33.7 30 0.00065 30.0 2.0 67 4-78 35-103 (568)
143 cd01778 RASSF1_RA Ubiquitin-li 32.8 1.6E+02 0.0035 20.0 6.4 33 8-41 8-40 (96)
144 PF00894 Luteo_coat: Luteoviru 32.7 1.4E+02 0.0029 21.7 4.9 55 6-62 45-117 (138)
145 PF06200 tify: tify domain; I 32.7 43 0.00093 18.7 1.9 13 52-64 5-17 (36)
146 KOG3309 Ferredoxin [Energy pro 31.4 77 0.0017 23.5 3.6 30 5-35 42-71 (159)
147 KOG2507 Ubiquitin regulatory p 30.8 1.3E+02 0.0027 26.1 5.2 69 4-78 312-383 (506)
148 cd06408 PB1_NoxR The PB1 domai 30.3 1.2E+02 0.0026 20.1 4.1 32 9-41 3-35 (86)
149 cd01777 SNX27_RA Ubiquitin dom 28.6 1.3E+02 0.0029 20.0 4.1 34 6-40 1-34 (87)
150 PLN02593 adrenodoxin-like ferr 27.3 1.1E+02 0.0023 21.0 3.6 28 7-35 1-28 (117)
151 PF11816 DUF3337: Domain of un 27.1 1.1E+02 0.0025 24.6 4.2 53 22-74 252-312 (331)
152 PTZ00490 Ferredoxin superfamil 25.7 1.4E+02 0.0031 21.4 4.1 28 5-33 34-61 (143)
153 PTZ00380 microtubule-associate 25.6 99 0.0021 21.8 3.2 44 22-72 44-88 (121)
154 PRK07696 sulfur carrier protei 24.6 1.7E+02 0.0038 17.8 6.1 51 14-79 5-56 (67)
155 PRK12385 fumarate reductase ir 24.6 2.1E+02 0.0046 22.0 5.2 41 1-41 1-48 (244)
156 cd06404 PB1_aPKC PB1 domain is 24.5 1.3E+02 0.0028 19.9 3.4 32 9-40 1-32 (83)
157 COG4925 Uncharacterized conser 24.2 1.6E+02 0.0034 21.7 4.1 34 3-37 47-80 (166)
158 COG1978 Uncharacterized protei 23.5 1.6E+02 0.0035 21.5 4.0 33 7-40 50-82 (152)
159 PF06487 SAP18: Sin3 associate 23.5 1.1E+02 0.0023 21.5 3.0 54 26-79 45-114 (120)
160 PF12039 DUF3525: Protein of u 23.3 93 0.002 25.7 3.0 32 54-91 26-66 (453)
161 COG2104 ThiS Sulfur transfer p 23.0 2E+02 0.0044 17.9 7.2 54 22-90 12-65 (68)
162 PRK01712 carbon storage regula 22.8 1.1E+02 0.0024 19.2 2.7 34 4-38 15-48 (64)
163 smart00314 RA Ras association 22.7 2.1E+02 0.0045 18.0 5.4 24 17-40 15-38 (90)
164 PRK01777 hypothetical protein; 22.7 2.4E+02 0.0052 18.7 6.9 65 6-79 3-69 (95)
165 PF11816 DUF3337: Domain of un 22.2 94 0.002 25.0 2.9 29 23-62 301-329 (331)
166 PRK00568 carbon storage regula 21.8 1.1E+02 0.0024 19.9 2.6 34 4-38 15-52 (76)
167 PF11620 GABP-alpha: GA-bindin 21.2 2.7E+02 0.0058 18.7 4.4 51 22-79 7-57 (88)
168 cd01764 Urm1 Urm1-like ubuitin 20.9 2.6E+02 0.0056 18.4 4.4 63 22-93 23-91 (94)
169 PF02991 Atg8: Autophagy prote 20.4 2.4E+02 0.0052 19.1 4.2 45 22-72 37-81 (104)
170 PF10407 Cytokin_check_N: Cdc1 20.1 81 0.0018 20.3 1.7 19 23-41 8-26 (73)
No 1
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=100.00 E-value=2.3e-32 Score=190.03 Aligned_cols=111 Identities=51% Similarity=0.888 Sum_probs=86.4
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
+.|+|+|++.+|+++.++.|++++||++||+.|+++||.+|+..|.+++.+||||+||+|+|+.||++++++.|+.|..+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 57999999999997778999999999999999999999999988889999999999999999999999999999876678
Q ss_pred eEEEEEeccCCCCccCcCccCCCCCCceEEe
Q 033534 85 ITMHVVLRPSLPDKKGEKLLSDSSKSRCLCS 115 (117)
Q Consensus 85 ~t~Hlv~~~~~~~~~~~~~~~~~~~~~c~c~ 115 (117)
++||||++++.+.++.++..++.+..+|+|+
T Consensus 81 ~vmHlvvrp~~~~~~~~~~~~~~k~~~C~C~ 111 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKKRKKPKQSGCSCC 111 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS-----STT-----
T ss_pred EEEEEEecCCCCCccccccccCcCCCCCCCC
Confidence 9999999999999888877666555999996
No 2
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.97 E-value=6.3e-32 Score=187.58 Aligned_cols=111 Identities=56% Similarity=0.944 Sum_probs=105.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
++.+.|+||+.+|.++.|+.+++++||++||++|+++||++++++|.++++|||||+||+|+|+.||++|+++.|+.|..
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 57899999999999999999999999999999999999999999998889999999999999999999999999988888
Q ss_pred ceEEEEEeccCCCCccCcCccCCCCC-CceEE
Q 033534 84 AITMHVVLRPSLPDKKGEKLLSDSSK-SRCLC 114 (117)
Q Consensus 84 ~~t~Hlv~~~~~~~~~~~~~~~~~~~-~~c~c 114 (117)
.+|||||+|++.+.+..++......+ .+|+|
T Consensus 82 ~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c 113 (113)
T cd01814 82 VITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113 (113)
T ss_pred ceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence 99999999999999999888877777 99988
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.82 E-value=4.9e-20 Score=118.46 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=67.4
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+++. +++++++||++||++|++ .+++| +++|||+|+||.|+|+.+|++|+|++++ +
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~~-----~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~------~ 66 (74)
T cd01807 1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVSE-----HLNVP--EEQQRLLFKGKALADDKRLSDYSIGPNA------K 66 (74)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHeEEEECCEECCCCCCHHHCCCCCCC------E
Confidence 57999999999976 999999999999999984 46787 4999999999999999999999999998 9
Q ss_pred EEEEeccC
Q 033534 87 MHVVLRPS 94 (117)
Q Consensus 87 ~Hlv~~~~ 94 (117)
+||+++++
T Consensus 67 l~l~~~~~ 74 (74)
T cd01807 67 LNLVVRPP 74 (74)
T ss_pred EEEEEcCC
Confidence 99999853
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.81 E-value=7.6e-20 Score=117.68 Aligned_cols=74 Identities=23% Similarity=0.209 Sum_probs=65.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+ ++++. ++|++++||++||++|+ +.+++| +++|||||+||.|+|+.+|++|+|++++ |
T Consensus 1 mqi~vk~--~~~~~-l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~------t 64 (74)
T cd01793 1 MQLFVRA--QNTHT-LEVTGQETVSDIKAHVA-----GLEGID--VEDQVLLLAGVPLEDDATLGQCGVEELC------T 64 (74)
T ss_pred CEEEEEC--CCEEE-EEECCcCcHHHHHHHHH-----hhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCC------E
Confidence 4788887 45654 99999999999999998 446787 4999999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 033534 87 MHVVLRPSLP 96 (117)
Q Consensus 87 ~Hlv~~~~~~ 96 (117)
+|+++++.++
T Consensus 65 l~l~~~l~GG 74 (74)
T cd01793 65 LEVAGRLLGG 74 (74)
T ss_pred EEEEEecCCC
Confidence 9999998774
No 5
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.81 E-value=8.7e-20 Score=120.16 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=63.6
Q ss_pred eEEEEEEecCCCeee-eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccC--CCCCCCCC
Q 033534 6 LIELKFRLADGADIG-PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR--LPVVELPG 82 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~-~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~--i~~g~~p~ 82 (117)
.|+|.||+.+|+... ++++++++||++||++|++.+|. .| ++++|||||+||+|+|+.||++|. +..+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~----~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~--- 72 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS----KP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYH--- 72 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC----CC-ChhHeEEEEcCeeccchhhHHHHhhcccCCc---
Confidence 378999999999843 25558999999999999977642 33 269999999999999999999996 88887
Q ss_pred cceEEEEEe
Q 033534 83 TAITMHVVL 91 (117)
Q Consensus 83 ~~~t~Hlv~ 91 (117)
|||||.
T Consensus 73 ---tiHLV~ 78 (79)
T cd01790 73 ---MVHLVC 78 (79)
T ss_pred ---eEEEEe
Confidence 999996
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.81 E-value=1.5e-19 Score=124.05 Aligned_cols=78 Identities=29% Similarity=0.290 Sum_probs=71.2
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
+.++|+||+.+|+++. +++++++||++||++|++ .+++| +++|||+|+||+|+|+.+|++|+|.+++
T Consensus 26 ~~M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~s----- 92 (103)
T cd01802 26 DTMELFIETLTGTCFE-LRVSPFETVISVKAKIQR-----LEGIP--VAQQHLIWNNMELEDEYCLNDYNISEGC----- 92 (103)
T ss_pred CCEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHH-----HhCCC--hHHEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 5799999999999976 999999999999999984 45787 4999999999999999999999999998
Q ss_pred eEEEEEeccCCC
Q 033534 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
++||+++..++
T Consensus 93 -tL~l~~~l~GG 103 (103)
T cd01802 93 -TLKLVLAMRGG 103 (103)
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.80 E-value=2.6e-19 Score=117.05 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=67.4
Q ss_pred EEEEEEecCCCeeeeEE-eCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcce
Q 033534 7 IELKFRLADGADIGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~-v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~ 85 (117)
|+|+||+.+|++..+++ +++++||.+||++|+ +.+++| +++|||||+||+|+|+.+|++|+|.+++
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~-----~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~------ 67 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQ-----ELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLND------ 67 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHH-----HHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCC------
Confidence 58999999999743485 899999999999998 446787 4999999999999999999999999998
Q ss_pred EEEEEeccCC
Q 033534 86 TMHVVLRPSL 95 (117)
Q Consensus 86 t~Hlv~~~~~ 95 (117)
++||++++.+
T Consensus 68 ~i~l~~~~~~ 77 (78)
T cd01797 68 IIQLLVRQDP 77 (78)
T ss_pred EEEEEEecCC
Confidence 9999998764
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.79 E-value=6e-19 Score=113.23 Aligned_cols=76 Identities=24% Similarity=0.391 Sum_probs=68.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
++|.||+.+|+++. +++++++||++||++|+. ..++| +++|||+|+|+.|+|+.+|++|++.+++ +
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~-----~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~------~ 66 (76)
T PTZ00044 1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQE-----KEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGS------T 66 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHeEEEECCEEccCCCcHHHcCCCCCC------E
Confidence 57999999999976 999999999999999984 45777 4999999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 033534 87 MHVVLRPSLP 96 (117)
Q Consensus 87 ~Hlv~~~~~~ 96 (117)
+|++++..++
T Consensus 67 i~l~~~~~gg 76 (76)
T PTZ00044 67 IHMVLQLRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 9999997653
No 9
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.78 E-value=4.4e-19 Score=113.85 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=62.8
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEE
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~H 88 (117)
++||+.+|+++. +++++++||++||++|+ +.+++| +++|||||+||.|+|+.+|++|+|..++ +||
T Consensus 1 ~~vk~~~G~~~~-l~v~~~~TV~~lK~~I~-----~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~------tv~ 66 (70)
T cd01794 1 LKVRLSTGKDVK-LSVSSKDTVGQLKKQLQ-----AAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDY------VVQ 66 (70)
T ss_pred CeEEcCCCCEEE-EEECCcChHHHHHHHHH-----HHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCC------EEE
Confidence 578999999976 99999999999999998 446787 4999999999999999999999999887 999
Q ss_pred EEe
Q 033534 89 VVL 91 (117)
Q Consensus 89 lv~ 91 (117)
|++
T Consensus 67 ~~~ 69 (70)
T cd01794 67 VIV 69 (70)
T ss_pred EEe
Confidence 986
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.78 E-value=6.7e-19 Score=113.25 Aligned_cols=74 Identities=24% Similarity=0.229 Sum_probs=66.9
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEE
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~H 88 (117)
|+||+..|+++. +++++++||++||++|++ .+++| +++|||+|+||.|+|+.+|++|+|++++ ++|
T Consensus 1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~-----~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~------tl~ 66 (74)
T cd01810 1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVSQ-----RERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGC------TVF 66 (74)
T ss_pred CEEECCCCCEEE-EEECCcChHHHHHHHHHH-----HhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCC------EEE
Confidence 578999999976 999999999999999983 45777 4999999999999999999999999998 999
Q ss_pred EEeccCCC
Q 033534 89 VVLRPSLP 96 (117)
Q Consensus 89 lv~~~~~~ 96 (117)
|+++..++
T Consensus 67 l~~~l~gg 74 (74)
T cd01810 67 MNLRLRGG 74 (74)
T ss_pred EEEEccCC
Confidence 99997653
No 11
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.77 E-value=9.4e-19 Score=111.25 Aligned_cols=70 Identities=29% Similarity=0.440 Sum_probs=63.7
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEE
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~H 88 (117)
|.||+..|+++. +++++++||++||++|++ .+++| +++|||+|+||.|+|+.+|++|+|.+++ ++|
T Consensus 1 i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~s------tl~ 66 (70)
T cd01798 1 VYVRTNTGHTFP-VEVDPDTDIKQLKEVVAK-----RQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQS------ILH 66 (70)
T ss_pred CEEEcCCCCEEE-EEECCCChHHHHHHHHHH-----HHCCC--HHHeEEEECCeECCCCCcHHHcCCCCCC------EEE
Confidence 578999999976 999999999999999984 45776 4999999999999999999999999998 999
Q ss_pred EEec
Q 033534 89 VVLR 92 (117)
Q Consensus 89 lv~~ 92 (117)
|+.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 9975
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.77 E-value=1.8e-18 Score=112.02 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=64.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|.|+|++..|+.+. +++++++||++||++|++. .++| +++|||||+|++|+|+.+|++|||.+|+ +
T Consensus 2 ~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~s------t 67 (73)
T cd01791 2 IEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQ-----TGTR--PEKIVLKKWYTIFKDHISLGDYEIHDGM------N 67 (73)
T ss_pred EEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCC------E
Confidence 68999999999976 9999999999999999854 3565 5999999999999999999999999998 9
Q ss_pred EEEEe
Q 033534 87 MHVVL 91 (117)
Q Consensus 87 ~Hlv~ 91 (117)
+||.-
T Consensus 68 v~l~~ 72 (73)
T cd01791 68 LELYY 72 (73)
T ss_pred EEEEe
Confidence 99864
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.76 E-value=4.1e-18 Score=108.63 Aligned_cols=76 Identities=28% Similarity=0.402 Sum_probs=68.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+++. +++++++||++||++|++. .++| ++.|||+|.|+.|+|+.+|++|++.+|+ +
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~------~ 66 (76)
T cd01806 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGS------V 66 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhHh-----hCCC--hhhEEEEECCeEccCCCCHHHcCCCCCC------E
Confidence 57999999999976 9999999999999999843 4676 5899999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 033534 87 MHVVLRPSLP 96 (117)
Q Consensus 87 ~Hlv~~~~~~ 96 (117)
+|++++..++
T Consensus 67 i~l~~~~~gg 76 (76)
T cd01806 67 LHLVLALRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 9999987553
No 14
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.75 E-value=5.9e-18 Score=107.89 Aligned_cols=76 Identities=32% Similarity=0.452 Sum_probs=68.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|.||+.+|+.+. +++++++||++||++|++ ..++| ++.|||+|.|+.|+|+.+|++|++.+|+ +
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~ 66 (76)
T cd01803 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (76)
T ss_pred CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHH-----HhCCC--HHHeEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 57999999999976 999999999999999984 35676 4999999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 033534 87 MHVVLRPSLP 96 (117)
Q Consensus 87 ~Hlv~~~~~~ 96 (117)
+|++++..++
T Consensus 67 i~l~~~~~gg 76 (76)
T cd01803 67 LHLVLRLRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 9999997664
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.75 E-value=7.9e-18 Score=109.71 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=67.2
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcce
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~ 85 (117)
.++|+||+..|+.+. +++++++||++||++|++. .++| +++|||+|+||.|+|+ +|++|||.+|+
T Consensus 1 ~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~------ 65 (78)
T cd01804 1 PMNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQR-----LKVP--KERLALLHRETRLSSG-KLQDLGLGDGS------ 65 (78)
T ss_pred CeEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHH-----hCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCC------
Confidence 378999999999865 9999999999999999854 3565 5999999999999999 99999999998
Q ss_pred EEEEEeccCCC
Q 033534 86 TMHVVLRPSLP 96 (117)
Q Consensus 86 t~Hlv~~~~~~ 96 (117)
++||+....++
T Consensus 66 ~i~l~~~~~~~ 76 (78)
T cd01804 66 KLTLVPTVEAG 76 (78)
T ss_pred EEEEEeecccc
Confidence 99999887543
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.74 E-value=8.5e-18 Score=107.20 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=63.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
+.|.||+.+|+. ++++++++||++||++|++. +++| +++|||+|+||.|+|+.+|++|++.+|+ +
T Consensus 1 ~~i~vk~~~g~~--~l~v~~~~TV~~lK~~I~~~-----~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~s------t 65 (71)
T cd01808 1 IKVTVKTPKDKE--EIEIAEDASVKDFKEAVSKK-----FKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGL------T 65 (71)
T ss_pred CEEEEEcCCCCE--EEEECCCChHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCC------E
Confidence 468999999974 49999999999999999854 3565 5999999999999999999999999998 9
Q ss_pred EEEEec
Q 033534 87 MHVVLR 92 (117)
Q Consensus 87 ~Hlv~~ 92 (117)
+||+++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999975
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.73 E-value=2.6e-17 Score=105.70 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=65.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+++. +++++++||++||++|++. ++++.++++|||+|.|+.|+|+.+|++|++++|+ +
T Consensus 1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~-----~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~------~ 68 (77)
T cd01805 1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEE-----KGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKD------F 68 (77)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHh-----hCCCCChhHeEEEECCEEccCCCCHHHcCCCCCC------E
Confidence 57999999999976 9999999999999999854 4551125999999999999999999999999998 8
Q ss_pred EEEEecc
Q 033534 87 MHVVLRP 93 (117)
Q Consensus 87 ~Hlv~~~ 93 (117)
+|++++.
T Consensus 69 i~~~~~~ 75 (77)
T cd01805 69 VVVMVSK 75 (77)
T ss_pred EEEEEec
Confidence 8877654
No 18
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=1.7e-17 Score=108.29 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=67.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeE--EEcCeecCCCccccccCCCCCCCCCcc
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
++|+||+..|+++. +++++++||++||++|++. .++| +++||| +|+|++|+|+.+|++||+.+|+
T Consensus 3 ~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~-----~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs----- 69 (80)
T cd01792 3 WDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQK-----IGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGS----- 69 (80)
T ss_pred eEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCC-----
Confidence 78999999999976 9999999999999999854 3566 599999 9999999999999999999998
Q ss_pred eEEEEEeccC
Q 033534 85 ITMHVVLRPS 94 (117)
Q Consensus 85 ~t~Hlv~~~~ 94 (117)
++||+++..
T Consensus 70 -~l~l~~~~~ 78 (80)
T cd01792 70 -TVLLVVQNC 78 (80)
T ss_pred -EEEEEEEcc
Confidence 999998854
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.72 E-value=3.2e-17 Score=103.49 Aligned_cols=72 Identities=33% Similarity=0.446 Sum_probs=65.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+.+|+.+. +++++++||++||++|++. .++| ++.|||+|.|+.|+|+.+|++|++.+|+ +
T Consensus 1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~ 66 (72)
T cd01809 1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEE-----VGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGH------T 66 (72)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCEECCCcCcHHHCCCCCCC------E
Confidence 57999999999865 9999999999999999854 4676 5899999999999999999999999998 9
Q ss_pred EEEEec
Q 033534 87 MHVVLR 92 (117)
Q Consensus 87 ~Hlv~~ 92 (117)
+|++.+
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999875
No 20
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.3e-18 Score=105.68 Aligned_cols=70 Identities=33% Similarity=0.454 Sum_probs=65.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
+.|++++++|+.+. ++++|+++|+.+|++|. +.+++| |.+|||||+||++.|+.|-++|++.-|+ +
T Consensus 1 m~iKvktLt~KeIe-idIep~DkverIKErvE-----EkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GS------V 66 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVE-----EKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGS------V 66 (70)
T ss_pred CeeeEeeeccceEE-EeeCcchHHHHHHHHhh-----hhcCCC--chhhhhhhccccccccccHHHhhhccce------e
Confidence 46899999999987 99999999999999997 668998 5999999999999999999999999998 9
Q ss_pred EEEE
Q 033534 87 MHVV 90 (117)
Q Consensus 87 ~Hlv 90 (117)
+|+|
T Consensus 67 lHlv 70 (70)
T KOG0005|consen 67 LHLV 70 (70)
T ss_pred EeeC
Confidence 9985
No 21
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.70 E-value=6.2e-17 Score=101.81 Aligned_cols=68 Identities=31% Similarity=0.484 Sum_probs=61.4
Q ss_pred EecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEe
Q 033534 12 RLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (117)
Q Consensus 12 k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~ 91 (117)
|+.+|+++. +++++++||.+||++|++. .++| ++.|||+|+|+.|+|+.+|++|+|.+|+ +|||++
T Consensus 1 k~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~------~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFT-LEVDPDDTVADLKQKIAEE-----TGIP--PEQQRLIYNGKELDDDKTLSDYGIKDGS------TIHLVI 66 (69)
T ss_dssp EETTSEEEE-EEEETTSBHHHHHHHHHHH-----HTST--GGGEEEEETTEEESTTSBTGGGTTSTTE------EEEEEE
T ss_pred CCCCCcEEE-EEECCCCCHHHhhhhcccc-----cccc--cccceeeeeeecccCcCcHHHcCCCCCC------EEEEEE
Confidence 678999876 9999999999999999865 3465 5999999999999999999999999998 999998
Q ss_pred cc
Q 033534 92 RP 93 (117)
Q Consensus 92 ~~ 93 (117)
++
T Consensus 67 k~ 68 (69)
T PF00240_consen 67 KP 68 (69)
T ss_dssp SS
T ss_pred ec
Confidence 75
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.69 E-value=7.8e-17 Score=103.21 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=59.7
Q ss_pred EEEEec-CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCC-ccccccCCCCCCCCCcceE
Q 033534 9 LKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 9 i~~k~~-~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~p~~~~t 86 (117)
|+||+. +|+++. +++++++||++||++|+ +.+++|+ ++|||||+||.|+|+ .+|++|+|.+|+ +
T Consensus 1 l~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~-----~~~gip~--~~q~Li~~Gk~L~D~~~~L~~~gi~~~~------~ 66 (71)
T cd01796 1 ITVYTARSETTFS-LDVDPDLELENFKALCE-----AESGIPA--SQQQLIYNGRELVDNKRLLALYGVKDGD------L 66 (71)
T ss_pred CEEEECCCCCEEE-EEECCcCCHHHHHHHHH-----HHhCCCH--HHeEEEECCeEccCCcccHHHcCCCCCC------E
Confidence 578999 888865 99999999999999998 4467874 999999999999987 689999999998 8
Q ss_pred EEE
Q 033534 87 MHV 89 (117)
Q Consensus 87 ~Hl 89 (117)
+||
T Consensus 67 l~l 69 (71)
T cd01796 67 VVL 69 (71)
T ss_pred EEE
Confidence 886
No 23
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.69 E-value=8.9e-17 Score=104.01 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=63.2
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEecc
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 93 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~~ 93 (117)
++|+++. +++++++||++||++|+. ..++| +++|||+|.|+.|+|+.+|++|++.+|+ ++||+++.
T Consensus 5 l~g~~~~-l~v~~~~TV~~lK~~i~~-----~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLN-FTLQLSDPVSVLKVKIHE-----ETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKE 70 (76)
T ss_pred cCCeEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEec
Confidence 4687765 999999999999999984 45787 4999999999999999999999999998 99999998
Q ss_pred CCCCc
Q 033534 94 SLPDK 98 (117)
Q Consensus 94 ~~~~~ 98 (117)
.++.+
T Consensus 71 ~gg~~ 75 (76)
T cd01800 71 RGGRK 75 (76)
T ss_pred CCCcC
Confidence 87654
No 24
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=7.6e-17 Score=117.33 Aligned_cols=80 Identities=31% Similarity=0.429 Sum_probs=73.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
+.|.+++++|+++. +++++++||..+|++|+ +.++||+ ++|||||+|+.|+|+.+|+||+|+..+ |
T Consensus 1 m~ifVk~l~~kti~-~eve~~~ti~~~Kakiq-----~~egIp~--dqqrlifag~qLedgrtlSDY~Iqkes------t 66 (156)
T KOG0004|consen 1 MQIFVKTLTGKTIT-LEVEANDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (156)
T ss_pred Cccchhhcccccee-eeecccccHHHHHHhhh-----cccCCCc--hhhhhhhhhcccccCCccccccccccc------e
Confidence 46889999999987 99999999999999997 7789984 999999999999999999999999987 9
Q ss_pred EEEEeccCCCCccC
Q 033534 87 MHVVLRPSLPDKKG 100 (117)
Q Consensus 87 ~Hlv~~~~~~~~~~ 100 (117)
+|||++..++.+.-
T Consensus 67 l~l~l~l~Gg~kkr 80 (156)
T KOG0004|consen 67 LHLVLRLRGGAKKR 80 (156)
T ss_pred EEEEEEecCCcccc
Confidence 99999999887444
No 25
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2e-17 Score=114.49 Aligned_cols=75 Identities=33% Similarity=0.461 Sum_probs=69.7
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEE
Q 033534 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM 87 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~ 87 (117)
++.+++.+|+++. ++++|++||..||++|. +.+++| +++|||||+||+|+|+.||++|++...+ |+
T Consensus 2 ~~~~~~~~GKT~~-le~EpS~ti~~vKA~i~-----~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~------Tl 67 (128)
T KOG0003|consen 2 QIFVKTLTGKTIT-LEVEPSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES------TL 67 (128)
T ss_pred cEEEEEeeCceEE-EEecccchHHHHHHHhc-----cccCCC--HHHHHHHhcccccccCCcccccCccchh------hh
Confidence 5778889999987 99999999999999996 778998 5999999999999999999999999877 99
Q ss_pred EEEeccCCC
Q 033534 88 HVVLRPSLP 96 (117)
Q Consensus 88 Hlv~~~~~~ 96 (117)
|++++..++
T Consensus 68 ~~~~rL~GG 76 (128)
T KOG0003|consen 68 HLVLRLRGG 76 (128)
T ss_pred hhhHHHhcC
Confidence 999999988
No 26
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.63 E-value=2.3e-15 Score=99.89 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=72.7
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCC
Q 033534 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~ 82 (117)
....|+|++++.+|+.+. |+|.++++++.||++++ +..++| +++|||+|.|+.|+|+.|+++|++.+++
T Consensus 8 ~~~~i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~-----~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d--- 76 (87)
T cd01763 8 ISEHINLKVKGQDGNEVF-FKIKRSTPLKKLMEAYC-----QRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGD--- 76 (87)
T ss_pred CCCeEEEEEECCCCCEEE-EEEcCCCHHHHHHHHHH-----HHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCC---
Confidence 347899999999999987 99999999999999998 446776 4999999999999999999999999999
Q ss_pred cceEEEEEeccCCC
Q 033534 83 TAITMHVVLRPSLP 96 (117)
Q Consensus 83 ~~~t~Hlv~~~~~~ 96 (117)
+||++++..++
T Consensus 77 ---~I~v~l~l~GG 87 (87)
T cd01763 77 ---EIEVMLEQTGG 87 (87)
T ss_pred ---EEEEEEecccC
Confidence 99999988764
No 27
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.62 E-value=1.7e-15 Score=95.55 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=61.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+||+. |+.+. +++++++||++||++|+ +..++| +++|||+|.|+.|+|+.+|++|++.+|+ +
T Consensus 1 i~i~vk~~-g~~~~-i~v~~~~tv~~lK~~i~-----~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~------~ 65 (71)
T cd01812 1 IRVRVKHG-GESHD-LSISSQATFGDLKKMLA-----PVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGS------K 65 (71)
T ss_pred CEEEEEEC-CEEEE-EEECCCCcHHHHHHHHH-----HhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCC------E
Confidence 57889986 77755 99999999999999998 446776 5999999999999999999999999998 8
Q ss_pred EEEEe
Q 033534 87 MHVVL 91 (117)
Q Consensus 87 ~Hlv~ 91 (117)
+|++.
T Consensus 66 l~v~~ 70 (71)
T cd01812 66 VMLLE 70 (71)
T ss_pred EEEec
Confidence 88763
No 28
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.61 E-value=9.2e-16 Score=100.11 Aligned_cols=58 Identities=26% Similarity=0.427 Sum_probs=49.3
Q ss_pred CCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEec
Q 033534 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 92 (117)
Q Consensus 25 ~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~ 92 (117)
+.++||.+||++|++.++ ++++ ++++|||||+||+|+|+.||++|+|.+|+ ++|||..
T Consensus 18 ~~~~TV~~LK~kI~~~~~---egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gs------tlhLv~~ 75 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLP---DSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGS------TIHILRK 75 (75)
T ss_pred CccCcHHHHHHHHHHhhc---cCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCC------EEEEEeC
Confidence 367999999999986531 3454 26999999999999999999999999998 9999863
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1e-14 Score=119.46 Aligned_cols=68 Identities=32% Similarity=0.466 Sum_probs=59.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
|+|+||+..|+++. ++|++++||.+||++|+... ....+| +++|||||+||+|+|+.+|++|+|++++
T Consensus 1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~--g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~ 68 (378)
T TIGR00601 1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQ--GKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD 68 (378)
T ss_pred CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhh--CCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence 57999999999976 99999999999999998542 111265 5999999999999999999999999998
No 30
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.55 E-value=1e-14 Score=121.76 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=68.1
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcce
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~ 85 (117)
.++|+||+.+.+ ++|.|..+.||.+||+.|+..+ ++| +++++|||+||+|+|++||..|||.+|.
T Consensus 15 ~irV~Vkt~~dk--~~~~V~~~ssV~qlKE~I~~~f-----~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~------ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKDK--YEVNVASDSSVLQLKELIAQRF-----GAP--PDQLVLIYAGRILKDDDTLKQYGIQDGH------ 79 (493)
T ss_pred eeEEEEecCCcc--eeEecccchHHHHHHHHHHHhc-----CCC--hhHeeeeecCccccChhhHHHcCCCCCc------
Confidence 488999998883 3499999999999999998653 344 6999999999999999999999999998
Q ss_pred EEEEEeccCCCCcc
Q 033534 86 TMHVVLRPSLPDKK 99 (117)
Q Consensus 86 t~Hlv~~~~~~~~~ 99 (117)
|||||++.......
T Consensus 80 TvHLVik~~~~~~~ 93 (493)
T KOG0010|consen 80 TVHLVIKSQPRPTG 93 (493)
T ss_pred EEEEEeccCCCCCC
Confidence 99999998755433
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.54 E-value=1.9e-14 Score=93.12 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=57.7
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE---cCeecCCCccccccCCCCCCCCCcc
Q 033534 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH---AGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~---~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
.|.++. .|+++. ++|++++||++||++|++ ..++| +++||||| +|+.|+|+.+|++|+|.+|+
T Consensus 2 ~i~vk~-~g~~~~-v~v~~~~Tv~~lK~~i~~-----~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~----- 67 (74)
T cd01813 2 PVIVKW-GGQEYS-VTTLSEDTVLDLKQFIKT-----LTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNT----- 67 (74)
T ss_pred EEEEEE-CCEEEE-EEECCCCCHHHHHHHHHH-----HHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCC-----
Confidence 456655 677765 999999999999999984 45677 59999997 99999999999999999998
Q ss_pred eEEEEE
Q 033534 85 ITMHVV 90 (117)
Q Consensus 85 ~t~Hlv 90 (117)
.++|+
T Consensus 68 -~i~lm 72 (74)
T cd01813 68 -KIMMM 72 (74)
T ss_pred -EEEEE
Confidence 77764
No 32
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.48 E-value=9.7e-14 Score=84.93 Aligned_cols=64 Identities=38% Similarity=0.500 Sum_probs=55.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
|+|+||+.+ +.+. +++++++||++||++|+.. .++| ++.|||+|.|+.|+|+.+|++|++.+|+
T Consensus 1 ~~i~vk~~~-~~~~-~~v~~~~tv~~lk~~i~~~-----~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTIT-LEVKPSDTVSELKEKIAEL-----TGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 578899988 5655 9999999999999999854 4666 4899999999999999999999999864
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.42 E-value=6.8e-13 Score=86.22 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=55.3
Q ss_pred EEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecC-CCccccccCCC-CCCCCCcceEEE
Q 033534 11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE-DNMTIAESRLP-VVELPGTAITMH 88 (117)
Q Consensus 11 ~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~-D~~tL~~~~i~-~g~~p~~~~t~H 88 (117)
=+...|.++. ++|++++||++||++|+ ..+++| +++||| |.|+.|. |+.+|++|++. +|+ ++|
T Consensus 7 ~~~~~~~t~~-l~v~~~~TV~~lK~kI~-----~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~------~~~ 71 (75)
T cd01799 7 DAQSHTVTIW-LTVRPDMTVAQLKDKVF-----LDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGD------SAF 71 (75)
T ss_pred ccccCCCeEE-EEECCCCcHHHHHHHHH-----HHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCC------EEE
Confidence 3445677765 99999999999999998 456887 499999 9999985 77999999999 777 888
Q ss_pred EEe
Q 033534 89 VVL 91 (117)
Q Consensus 89 lv~ 91 (117)
|-+
T Consensus 72 l~~ 74 (75)
T cd01799 72 LYI 74 (75)
T ss_pred EEe
Confidence 754
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.34 E-value=4.2e-12 Score=78.50 Aligned_cols=67 Identities=36% Similarity=0.488 Sum_probs=58.1
Q ss_pred EEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEE
Q 033534 11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 90 (117)
Q Consensus 11 ~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv 90 (117)
++..+|+.+. +++++++||.+||++|++.+ ++| ++.|+|+|.|+.|+|+.+|++|++.+++ ++|+.
T Consensus 2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~-----~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~------~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKE-----GVP--PEQQRLIYAGKILKDDKTLSDYGIQDGS------TLHLV 67 (69)
T ss_pred eEccCCCEEE-EEECCCChHHHHHHHHHHHH-----CcC--hHHEEEEECCcCCCCcCCHHHCCCCCCC------EEEEE
Confidence 5667888876 99999999999999999653 455 5899999999999999999999999987 78875
Q ss_pred e
Q 033534 91 L 91 (117)
Q Consensus 91 ~ 91 (117)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 4
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.33 E-value=2.6e-12 Score=103.18 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=59.3
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
|.|+||++.|.++. +++.|++||.+||.+|+..- +.. .| .++|+|||+||+|.|+.|+.+|++.+++
T Consensus 1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~~--g~d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~ 67 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETEK--GPD-YP--AEQQKLIYSGKILKDETTVGEYKVKEKK 67 (340)
T ss_pred CeeEeeeccCceeE-eecCcchhHHHHHHHHHhcc--CCC-Cc--hhhheeeecceeccCCcchhhhccccCc
Confidence 57999999999976 99999999999999999652 111 45 5999999999999999999999999987
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.24 E-value=2.3e-11 Score=77.08 Aligned_cols=72 Identities=35% Similarity=0.475 Sum_probs=61.1
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|+|+++..+|+.+. +.+.+++++..|++++++. .++|. .+.++|+|.|+.|++++|++++++.+|+ +
T Consensus 1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~-----~~i~~-~~~~~l~fdG~~L~~~~T~~~~~ied~d------~ 67 (72)
T PF11976_consen 1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEK-----KGIPP-EESIRLIFDGKRLDPNDTPEDLGIEDGD------T 67 (72)
T ss_dssp EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHH-----HTTTT--TTEEEEETTEEE-TTSCHHHHT-STTE------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHh-----hCCCc-cceEEEEECCEEcCCCCCHHHCCCCCCC------E
Confidence 68999999999876 9999999999999999843 46652 3899999999999999999999999999 9
Q ss_pred EEEEe
Q 033534 87 MHVVL 91 (117)
Q Consensus 87 ~Hlv~ 91 (117)
+|+++
T Consensus 68 Idv~I 72 (72)
T PF11976_consen 68 IDVII 72 (72)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 99874
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.8e-11 Score=107.21 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=67.9
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
.+|++|+++..+.. |.++..+||+++|++|+++ .+|++ +.|||||.||+|.|++++.+|+| +|. +
T Consensus 3 ~~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~-----~ni~s--~~qr~i~~grvl~~~k~vq~~~v-dgk------~ 67 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRAS-----VNIPS--EKQRLIYQGRVLQDDKKVQEYNV-DGK------V 67 (1143)
T ss_pred cceeeeecccceeE-EEechHHHHHHHHHHHHHh-----ccccc--ccceeeecceeeccchhhhhccC-CCe------E
Confidence 46999999999865 9999999999999999843 57875 99999999999999999999999 788 9
Q ss_pred EEEEeccCCCC
Q 033534 87 MHVVLRPSLPD 97 (117)
Q Consensus 87 ~Hlv~~~~~~~ 97 (117)
+|||-|+..+.
T Consensus 68 ~hlverppp~~ 78 (1143)
T KOG4248|consen 68 IHLVERPPPQT 78 (1143)
T ss_pred EEeeccCCCCc
Confidence 99999977654
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.05 E-value=4.9e-10 Score=76.83 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=53.2
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecC-CCccccccCCCCCCCCCcceEEEEEeccCC
Q 033534 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE-DNMTIAESRLPVVELPGTAITMHVVLRPSL 95 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~-D~~tL~~~~i~~g~~p~~~~t~Hlv~~~~~ 95 (117)
+++|++++||.+||.+|... .++| |..|+|+|.|+.|. |+.||++|||..++ +++|.+..+-
T Consensus 18 ~L~V~~~~TVg~LK~lImQ~-----f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgS------vl~LlideP~ 80 (107)
T cd01795 18 ALLVSANQTLKELKIQIMHA-----FSVA--PFDQNLSIDGKILSDDCATLGTLGVIPES------VILLKADEPI 80 (107)
T ss_pred eEEeCccccHHHHHHHHHHH-----hcCC--cccceeeecCceeccCCccHHhcCCCCCC------EEEEEecCCc
Confidence 49999999999999999854 3555 69999999999995 68999999999998 9999886443
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.05 E-value=1.6e-09 Score=71.48 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=55.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeE-EEcCe-----ec-CCCccccccCCCCCC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL-IHAGK-----IL-EDNMTIAESRLPVVE 79 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrL-I~~Gk-----~L-~D~~tL~~~~i~~g~ 79 (117)
+.|.|.........+..++++.||.+||++++. ..|+| |+.||| +|.|+ .| +|..+|++|++.+|.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~-----~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~ 74 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLEL-----VVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGC 74 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHH-----HHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCC
Confidence 455565543322223569999999999999974 35776 599999 59999 46 789999999999998
Q ss_pred CCCcceEEEEEe
Q 033534 80 LPGTAITMHVVL 91 (117)
Q Consensus 80 ~p~~~~t~Hlv~ 91 (117)
+||++=
T Consensus 75 ------~IhVvD 80 (84)
T cd01789 75 ------RIHVID 80 (84)
T ss_pred ------EEEEEe
Confidence 999874
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.96 E-value=9.4e-09 Score=62.65 Aligned_cols=72 Identities=36% Similarity=0.504 Sum_probs=62.7
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEE
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~H 88 (117)
+.+++..|++.. +++.+..+|..+|.+|. ...++| ++.|+|.|.|+.|+|+.+|.+|+|..+. ++|
T Consensus 2 ~~~~~~~gk~~~-~~~~~~~~i~~~k~~i~-----~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~------~~~ 67 (75)
T KOG0001|consen 2 IFVKTLDGKTIT-LEVSPSDTIEVVKAKIR-----DKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGS------TLH 67 (75)
T ss_pred EEEEecCCCEEE-EEecCCCHHHHHHHHHH-----hhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCC------EEE
Confidence 456678899976 99999999999999997 445676 4899999999999999999999999987 999
Q ss_pred EEeccC
Q 033534 89 VVLRPS 94 (117)
Q Consensus 89 lv~~~~ 94 (117)
++.+..
T Consensus 68 l~~~~~ 73 (75)
T KOG0001|consen 68 LVLSLR 73 (75)
T ss_pred EEEecC
Confidence 988765
No 41
>PLN02560 enoyl-CoA reductase
Probab=98.87 E-value=7.9e-09 Score=82.84 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=59.8
Q ss_pred EEEEEEecCCCee--eeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc---C----eecCCCccccccCCCC
Q 033534 7 IELKFRLADGADI--GPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---G----KILEDNMTIAESRLPV 77 (117)
Q Consensus 7 ~~i~~k~~~G~~~--~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---G----k~L~D~~tL~~~~i~~ 77 (117)
|.|.|+..+|+.+ .++++++++||++||++|++. .++. ++++|||++. | +.|+|+++|+++|+.+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~-----~~~~-~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~ 74 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKR-----KKKY-YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGD 74 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHH-----cCCC-ChhheEEEEecCCCCcCccccCCCCCHHhcCCCC
Confidence 4577777889887 359999999999999999854 2331 3699999983 4 4899999999999999
Q ss_pred CCCCCcceEEEEEeccCCCC
Q 033534 78 VELPGTAITMHVVLRPSLPD 97 (117)
Q Consensus 78 g~~p~~~~t~Hlv~~~~~~~ 97 (117)
|+ ++| ++..|++
T Consensus 75 gs------tLy--~kDLGpQ 86 (308)
T PLN02560 75 GG------TVV--FKDLGPQ 86 (308)
T ss_pred Cc------eEE--EEeCCCc
Confidence 87 665 5555553
No 42
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.83 E-value=2.5e-08 Score=67.91 Aligned_cols=59 Identities=37% Similarity=0.583 Sum_probs=44.8
Q ss_pred EEEEecCC-CeeeeEEeC--CCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCcccccc
Q 033534 9 LKFRLADG-ADIGPSKFS--PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (117)
Q Consensus 9 i~~k~~~G-~~~~~~~v~--~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (117)
|.||+.++ -++ +++|. .++||..||+.|.+.+|.+- +-..+||||+||.|.|...|+..
T Consensus 3 l~IRFs~sipDl-~L~I~~~~~~Tv~~LK~lIR~~~p~~~-----s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDL-PLDIPSPNTTTVAWLKQLIRERLPPEP-----SRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCc-eeecCCCCcccHHHHHHHHHhhcCCCC-----ccccEEeeecCcccCccchhhhh
Confidence 44455543 233 48887 89999999999998886543 35899999999999998876543
No 43
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.80 E-value=2.1e-08 Score=70.12 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=61.2
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCC-CCcc
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTA 84 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-p~~~ 84 (117)
++.|.||-- -.++. ++..+++||.+||++|.. -...| |+.|||+..+.+|+|++||+|||+....+ +..+
T Consensus 2 dvFlmIrR~-KTTiF-~dakes~tVlelK~~ieg-----I~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p 72 (119)
T cd01788 2 DVFLMIRRH-KTTIF-TDAKESTTVYELKRIVEG-----ILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP 72 (119)
T ss_pred ceEEEEEec-ceEEE-eecCCcccHHHHHHHHHH-----HhcCC--hhHheeecCceeecccccHHHcCccccccccCCC
Confidence 466777663 23555 899999999999999973 22345 69999998888999999999999976544 5566
Q ss_pred eEEEEEecc
Q 033534 85 ITMHVVLRP 93 (117)
Q Consensus 85 ~t~Hlv~~~ 93 (117)
.++-|.++.
T Consensus 73 A~vgLa~r~ 81 (119)
T cd01788 73 ATVGLAFRS 81 (119)
T ss_pred CeEEEEEec
Confidence 788888884
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.76 E-value=2.5e-08 Score=64.47 Aligned_cols=53 Identities=32% Similarity=0.325 Sum_probs=43.5
Q ss_pred CCCccHHHHHHHHHhhCCCcccCCCCCCcceeE--EEcCeecCCCccccccCCCCCCCCCcceEEEE
Q 033534 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGKILEDNMTIAESRLPVVELPGTAITMHV 89 (117)
Q Consensus 25 ~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hl 89 (117)
+++.||.+||+.|++.++ ..+ +++||| ++.|++|.|+++|.++|+.+|+ ++|+
T Consensus 20 ~~~aTV~dlk~~i~~~~~----~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~------~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSP----QLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAGA------TLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcC----CCC--cceeEEEeCCCCcccCCcccHhhcCCCCCC------EEEE
Confidence 588999999999986531 222 578777 6999999999999999999987 7775
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.58 E-value=2.7e-07 Score=60.76 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=52.8
Q ss_pred EEEEEEecCCC--eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc----Ce----ecCCCccccccCCC
Q 033534 7 IELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA----GK----ILEDNMTIAESRLP 76 (117)
Q Consensus 7 ~~i~~k~~~G~--~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~----Gk----~L~D~~tL~~~~i~ 76 (117)
|+|.|.....+ .. +..|+++.||.+||++|+.. .|+| ++.|||.+. |. ..+|..+|.+|++.
T Consensus 2 v~l~It~~~~~~~~~-ekr~~~~~Tv~eLK~kl~~~-----~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~ 73 (87)
T PF14560_consen 2 VKLFITSSNSKQRSV-EKRFPKSITVSELKQKLEKL-----TGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK 73 (87)
T ss_dssp EEEEEEESSSSSSEE-EEEEETTSBHHHHHHHHHHH-----HTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred EEEEEEeCCCCCeeE-EEEcCCCCCHHHHHHHHHHH-----hCCC--cccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence 56677665543 43 48999999999999999854 4777 599999776 11 23679999999999
Q ss_pred CCCCCCcceEEEEE
Q 033534 77 VVELPGTAITMHVV 90 (117)
Q Consensus 77 ~g~~p~~~~t~Hlv 90 (117)
+|. ++|++
T Consensus 74 dg~------~i~V~ 81 (87)
T PF14560_consen 74 DGM------RIHVV 81 (87)
T ss_dssp TTE------EEEEE
T ss_pred CCC------EEEEE
Confidence 997 89975
No 46
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.3e-07 Score=72.69 Aligned_cols=74 Identities=26% Similarity=0.465 Sum_probs=57.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
+.|.|+-.+...-.+++|+.+++|.+||+.++.. .++| ++++|+||+||.|.|+.|+..+.+...+ .
T Consensus 3 ~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~-----~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs------~ 69 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKR-----QGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQS------A 69 (446)
T ss_pred EEEEeCCccccCceeEEEecCCCHHHHHHHHHHh-----hCCC--hhheEEEEeccccccCceeecccccccc------h
Confidence 4555653322222369999999999999999854 5777 4999999999999999999988888765 7
Q ss_pred EEEE-ecc
Q 033534 87 MHVV-LRP 93 (117)
Q Consensus 87 ~Hlv-~~~ 93 (117)
+|++ +|+
T Consensus 70 ~hi~~lRP 77 (446)
T KOG0006|consen 70 THIMLLRP 77 (446)
T ss_pred hhhhccCc
Confidence 8877 554
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.41 E-value=2.1e-06 Score=49.12 Aligned_cols=65 Identities=31% Similarity=0.386 Sum_probs=54.0
Q ss_pred ecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEe
Q 033534 13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (117)
Q Consensus 13 ~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~ 91 (117)
..+|.... +.+.+++|+.+||++|.++++ . +++.++|++.|+.+.+...+.++++..++ ++|+..
T Consensus 4 ~~~~~~~~-~~~~~~~tv~~l~~~i~~~~~-----~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~i~~~~ 68 (69)
T cd00196 4 LNDGKTVE-LLVPSGTTVADLKEKLAKKLG-----L--PPEQQRLLVNGKILPDSLTLEDYGLQDGD------ELVLVP 68 (69)
T ss_pred ecCCCEEE-EEcCCCCcHHHHHHHHHHHHC-----c--ChHHeEEEECCeECCCCCcHHHcCCCCCC------EEEEEe
Confidence 33566654 899999999999999997653 3 36899999999999999988899999988 888754
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.26 E-value=3.6e-06 Score=55.31 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=40.6
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc--C-eec--CCCccccccCCCCCC
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--G-KIL--EDNMTIAESRLPVVE 79 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~--G-k~L--~D~~tL~~~~i~~g~ 79 (117)
+.|-|+||..+|.. . +++++++|+.+||++|.+.. ++| ...+.|... + ..| .++.+|+++||+.|+
T Consensus 3 ~~milRvrS~dG~~-R-ie~~~~~t~~~L~~kI~~~l-----~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 3 SSMILRVRSKDGMK-R-IEVSPSSTLSDLKEKISEQL-----SIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp ---EEEEE-SSEEE-E-EEE-TTSBHHHHHHHHHHHS----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred ccEEEEEECCCCCE-E-EEcCCcccHHHHHHHHHHHc-----CCC--CcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 57889999999965 5 99999999999999999664 333 245544221 1 134 578999999999999
Q ss_pred CCCcceEEEEE
Q 033534 80 LPGTAITMHVV 90 (117)
Q Consensus 80 ~p~~~~t~Hlv 90 (117)
.++|.
T Consensus 74 ------mlyL~ 78 (80)
T PF11543_consen 74 ------MLYLK 78 (80)
T ss_dssp ------EEE--
T ss_pred ------EEEEe
Confidence 77753
No 49
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.02 E-value=1.4e-05 Score=54.67 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=56.1
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC--eecCCCccccccCCCCCCC-CC
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILEDNMTIAESRLPVVEL-PG 82 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g~~-p~ 82 (117)
++.|++|-- ..++. ++.+++.||-+||.+++.- ...| ++.|||...- ..|+|++||+++|+..... |.
T Consensus 2 ~~f~~VrR~-kttif-~da~es~tV~elK~~l~gi-----~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q 72 (110)
T KOG4495|consen 2 DVFLRVRRH-KTTIF-TDAKESSTVFELKRKLEGI-----LKRP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQ 72 (110)
T ss_pred ceeeeeeec-ceeEE-eecCccccHHHHHHHHHHH-----HhCC--CcchheeecCHHHHhhccchhhhccccccccccC
Confidence 456666653 33555 8999999999999999832 2345 5999998844 4789999999999887665 66
Q ss_pred cceEEEE
Q 033534 83 TAITMHV 89 (117)
Q Consensus 83 ~~~t~Hl 89 (117)
.+.++-|
T Consensus 73 ~pA~vgL 79 (110)
T KOG4495|consen 73 APATVGL 79 (110)
T ss_pred CCceeee
Confidence 6667655
No 50
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.79 E-value=0.00024 Score=45.73 Aligned_cols=74 Identities=26% Similarity=0.429 Sum_probs=56.0
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeecCCC--ccccccCCCCC
Q 033534 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILEDN--MTIAESRLPVV 78 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~D~--~tL~~~~i~~g 78 (117)
..+..+|.||+.+|+.+. ..|.+++||.+|.+.|..... .+. ....+|+ |--|.|.+. .||+++|+..+
T Consensus 3 ~~~~~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~~-----~~~-~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~ 75 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQLF-----SPE-ESDFELITAFPRRELTDEDSKTLEEAGLLPS 75 (82)
T ss_dssp TSSEEEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHHH-----CTT-TSSEEEEESSSTEECCSTTTSBTCCCTTSSC
T ss_pred CCCEEEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhcC-----CCC-CccEEEEeCCCCcCCCccccccHHHhcCCCC
Confidence 457899999999999977 999999999999999986521 111 1236675 556777654 69999998877
Q ss_pred CCCCcceEEEE
Q 033534 79 ELPGTAITMHV 89 (117)
Q Consensus 79 ~~p~~~~t~Hl 89 (117)
. +++|
T Consensus 76 ~------~l~v 80 (82)
T PF00789_consen 76 A------TLIV 80 (82)
T ss_dssp E------EEEE
T ss_pred e------EEEE
Confidence 5 7765
No 51
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.67 E-value=0.00016 Score=47.36 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=50.7
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc---Ce--ecCCCccccccCCCC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---GK--ILEDNMTIAESRLPV 77 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---Gk--~L~D~~tL~~~~i~~ 77 (117)
|+|+++-..+.+.. +.|+|...|..+|++|+..| +.+ .+|||-|. |+ .|.+..+|++|||=.
T Consensus 1 iqVtV~q~g~~dl~-l~vnPy~pI~k~K~kI~~~~-----~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiFs 67 (80)
T cd01811 1 IQVTVEQTGYSDWI-LRVNPYSPIRKIKEKIRRSR-----NCS---GLQRLSFQEPGGERQLLSSRKSLADYGIFS 67 (80)
T ss_pred CEEEeeecCCCceE-EEeCCcchHHHHHHHHHHhh-----Ccc---cceEEEeecCCcccccccccccHhhhccee
Confidence 46788877777755 99999999999999999876 343 69999985 33 578999999999865
No 52
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.61 E-value=0.00072 Score=44.12 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=52.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeecC-CCccccccCCCCC
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE-DNMTIAESRLPVV 78 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~-D~~tL~~~~i~~g 78 (117)
+...+|.||+.+|+.+. ..|..++||++|.+.|..+.|... .....|+ |=.|.|. ++.||+|+|+...
T Consensus 2 ~p~t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~~~------~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 2 EPTTSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPEFA------ARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred CCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCCCC------CCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 35678999999999977 899999999999999987643211 1345554 5677774 4889999999964
No 53
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0009 Score=45.81 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=62.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcc
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
.-|+|+++--+|..+. |.+.-++..+-|...-.++ .+++ -+.+|++|.|+.+.+.+|.+++++.+|+
T Consensus 19 ~hi~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r-----~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D----- 85 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCER-----QGLS--MNSLRFLFDGQRIRETHTPADLEMEDGD----- 85 (99)
T ss_pred ceEEEEEecCCCCEEE-EEeecCChHHHHHHHHHHH-----cCCc--cceEEEEECCcCcCCCCChhhhCCcCCc-----
Confidence 4466666654666655 9999999999999888743 4665 4999999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 033534 85 ITMHVVLRPSLP 96 (117)
Q Consensus 85 ~t~Hlv~~~~~~ 96 (117)
.|-++....++
T Consensus 86 -~Iev~~~q~gG 96 (99)
T KOG1769|consen 86 -EIEVVQEQTGG 96 (99)
T ss_pred -EEEEEeecccC
Confidence 88877665554
No 54
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.39 E-value=0.0019 Score=42.78 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=53.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC--eecC--------CCccccccC
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILE--------DNMTIAESR 74 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~--------D~~tL~~~~ 74 (117)
+.++|.||+.+|+.+. -.|..++||++|.+-|... + . .+...+|+++= |.+. .+.||+++|
T Consensus 3 ~~~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~~-~----~---~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG 73 (85)
T cd01774 3 DTVKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFSL-K----E---TPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG 73 (85)
T ss_pred ceEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhC-C----C---CCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence 6789999999999977 8999999999999999632 1 1 24788888877 7885 377999999
Q ss_pred CCCCC
Q 033534 75 LPVVE 79 (117)
Q Consensus 75 i~~g~ 79 (117)
|....
T Consensus 74 L~~s~ 78 (85)
T cd01774 74 LSNSE 78 (85)
T ss_pred CCCcc
Confidence 98654
No 55
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.35 E-value=0.002 Score=41.80 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=51.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeecCC---CccccccCCCCC
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED---NMTIAESRLPVV 78 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~g 78 (117)
.+..+|.||+.+|+.+. ..|+.++|+++|.+.|...+.. .....|+ |--|.+.+ +.||.++|+...
T Consensus 2 ~~~~~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps 72 (79)
T cd01772 2 YTETRIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS 72 (79)
T ss_pred CcEEEEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence 35788999999999977 8999999999999999866421 1334454 44567753 589999999875
Q ss_pred C
Q 033534 79 E 79 (117)
Q Consensus 79 ~ 79 (117)
.
T Consensus 73 a 73 (79)
T cd01772 73 A 73 (79)
T ss_pred e
Confidence 4
No 56
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.32 E-value=0.002 Score=41.55 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=50.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeecCC---CccccccCCCCC
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED---NMTIAESRLPVV 78 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~g 78 (117)
++..+|.||+.+|+.+. ..|.+++||.+|.+.|.... +.. ....+|+ |--|.|.+ +.||.++++..+
T Consensus 2 ~~~~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~-----~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~ 73 (80)
T smart00166 2 SDQCRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAAL-----TDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPS 73 (80)
T ss_pred CCeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHcc-----cCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCc
Confidence 46789999999999977 99999999999999995432 111 1345553 55667754 479999998765
Q ss_pred C
Q 033534 79 E 79 (117)
Q Consensus 79 ~ 79 (117)
.
T Consensus 74 ~ 74 (80)
T smart00166 74 S 74 (80)
T ss_pred e
Confidence 4
No 57
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.29 E-value=0.00084 Score=43.37 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=49.0
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE-EcCeecCCCccccccCCCCCCCCCcc
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-HAGKILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
-++|+|....|+.+- +.++.+.+|++|...|.+.......+.+ .....+|. -.|+.|+++.||++++|.+|+
T Consensus 2 ~~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~~~~~-~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd----- 74 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPGDDPP-GHGQWVLARAGGRPLDPDQTLADAGVRDGD----- 74 (79)
T ss_dssp EEEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S---T-T-E-EEEG-GGTEEEETTSBCGGGT--TT------
T ss_pred EEEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCccCCCC-CcceEEEEecCCcccCCcCcHhHcCCCCCC-----
Confidence 356777775566655 9999999999999999865421111111 11257777 789999999999999999999
Q ss_pred eEEEE
Q 033534 85 ITMHV 89 (117)
Q Consensus 85 ~t~Hl 89 (117)
+++|
T Consensus 75 -~L~L 78 (79)
T PF08817_consen 75 -VLVL 78 (79)
T ss_dssp -EEEE
T ss_pred -EEEe
Confidence 7765
No 58
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.11 E-value=0.0032 Score=40.23 Aligned_cols=63 Identities=21% Similarity=0.415 Sum_probs=49.0
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeecC---CCccccccCCCC
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE---DNMTIAESRLPV 77 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~ 77 (117)
..+|.||+.+|+.+. ..|..++||.+|.+-|...... ....+|+ |-.|.|. ++.||+++|+..
T Consensus 2 ~t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~ 69 (77)
T cd01767 2 TTKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN 69 (77)
T ss_pred cEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCcc
Confidence 468999999999976 8999999999999999865321 2445555 4456674 488999999984
No 59
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0014 Score=55.44 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCCeeeeEE-eCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEe
Q 033534 15 DGADIGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (117)
Q Consensus 15 ~G~~~~~~~-v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~ 91 (117)
.|+.+. ++ ++.++|+..+|++++ ..++.| |+.||+.+.|+.|.|+--+...+|++|. ++||.=
T Consensus 11 ~gk~y~-v~~l~~d~t~~vlKaqlf-----~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~------~lmMmG 74 (473)
T KOG1872|consen 11 GGKKYP-VETLSTDETPSVLKAQLF-----ALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNE------TLMMMG 74 (473)
T ss_pred cCcccc-ceeccCCCchHHHHHHHH-----HhcCCC--ccceeEEEecccccccccccccccCCCC------EEEeec
Confidence 455544 76 899999999999998 456776 6999999999999999889999999997 888753
No 60
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.09 E-value=0.0047 Score=45.71 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=55.8
Q ss_pred EEEEEEecCC----CeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE-cCeec--CCCccccccCCCCCC
Q 033534 7 IELKFRLADG----ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH-AGKIL--EDNMTIAESRLPVVE 79 (117)
Q Consensus 7 ~~i~~k~~~G----~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~-~Gk~L--~D~~tL~~~~i~~g~ 79 (117)
|+|.|.+.+| .++. +.+++++||.+|+.+|.+. .+.|. ..++.|.+ .|+.| .++..+..+--...
T Consensus 1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~-----~~~~~-~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~- 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSER-----LPIPS-SSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ- 72 (162)
T ss_pred CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhh-----cCCCc-cceeEEEEeCCCeeCCCccccHHhhccCcC-
Confidence 5788999999 4655 8899999999999999844 34442 22244554 34555 34444554432222
Q ss_pred CCCcceEEEEEeccCCCCccC
Q 033534 80 LPGTAITMHVVLRPSLPDKKG 100 (117)
Q Consensus 80 ~p~~~~t~Hlv~~~~~~~~~~ 100 (117)
+....+++|+++..++.-+.
T Consensus 73 -~~~~~~l~l~~rl~GGKGGF 92 (162)
T PF13019_consen 73 -DSDFITLRLSLRLRGGKGGF 92 (162)
T ss_pred -CCCceEEEEEEeccCCCccH
Confidence 22467999999988876544
No 61
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.01 E-value=0.086 Score=34.39 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=51.6
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeecC---CCccccccCCCC
Q 033534 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE---DNMTIAESRLPV 77 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~ 77 (117)
+++.++|.||+.+|+.+. -.|..++++++|-.-|..+ +.+ +...+|+ |==|.+. -+.||.++|+..
T Consensus 1 ~~~~~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~------~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p 71 (80)
T cd01771 1 GEPISKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK------GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP 71 (80)
T ss_pred CCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence 357889999999999976 8999999999999999743 222 2456664 4445663 367999999987
Q ss_pred CC
Q 033534 78 VE 79 (117)
Q Consensus 78 g~ 79 (117)
..
T Consensus 72 ~~ 73 (80)
T cd01771 72 QE 73 (80)
T ss_pred Cc
Confidence 65
No 62
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.98 E-value=0.059 Score=35.61 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=50.7
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeec---CCCccccccCCCC
Q 033534 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKIL---EDNMTIAESRLPV 77 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~~ 77 (117)
++..-+|.||+.+|+.+. -.|..++++++|-..|... +.+ ++..+|+ |==|.+ +-+.||.++|+..
T Consensus 2 ~~~~t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~~------g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P 72 (82)
T cd01773 2 NGPKARLMLRYPDGKREQ-IALPEQAKLLALVRHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCP 72 (82)
T ss_pred CCCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCC
Confidence 456678999999999976 9999999999999999752 222 3555554 233444 3368999999998
Q ss_pred CC
Q 033534 78 VE 79 (117)
Q Consensus 78 g~ 79 (117)
.+
T Consensus 73 ~~ 74 (82)
T cd01773 73 QE 74 (82)
T ss_pred Cc
Confidence 66
No 63
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.01 Score=40.35 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=53.8
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
-|+|++-.-+|..+. |.+--+++-.-|=+...++. +-. -+.+|++|.|+-++-++|..++++.+++
T Consensus 24 hinLkvv~qd~telf-FkiKktT~f~klm~af~~rq-----GK~--m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 24 HINLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRRQ-----GKN--MSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ccceEEecCCCCEEE-EEEeccchHHHHHHHHHHHh-----CcC--cceeEEEEcceecCCCCChhhcCCccch
Confidence 456666555888887 99999999998888877652 222 4899999999999999999999999887
No 64
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0031 Score=51.67 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=54.3
Q ss_pred ceEEEEEEecCCCeee-eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCc
Q 033534 5 DLIELKFRLADGADIG-PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~-~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~ 83 (117)
-.+.+.+|..+.+--. ++..+-.-||.+||..+..-.|. .|. +..|||||+||.|.|...|+|.=.+...
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPs----kpl-~~dqrliYsgkllld~qcl~d~lrkq~k---- 78 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPS----KPL-ELDQRLIYSGKLLLDHQCLTDWLRKQVK---- 78 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCC----CCc-hhhHHHHhhccccccchhHHHHHHHHHH----
Confidence 3455666665554311 25556778999999999866553 344 5899999999999999988876433221
Q ss_pred ceEEEEEeccCCC
Q 033534 84 AITMHVVLRPSLP 96 (117)
Q Consensus 84 ~~t~Hlv~~~~~~ 96 (117)
--+.|+|......
T Consensus 79 ~Hv~hlvcnsk~v 91 (391)
T KOG4583|consen 79 EHVKHLVCNSKEV 91 (391)
T ss_pred HHHHHHhcCCCCC
Confidence 2255665544443
No 65
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.02 Score=44.23 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=52.3
Q ss_pred EEEEEec-CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 8 ELKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 8 ~i~~k~~-~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
.++.++. +++.+. +.+...+||.++|.++.+. ++. ++-.||..|+|++|-|..-|.+|++..|.
T Consensus 147 ~lk~rlTtT~~d~~-lta~~~Dtv~eik~~L~Aa-----eg~--D~~sQrif~Sg~~l~dkt~LeEc~iekg~ 211 (231)
T KOG0013|consen 147 ILKLRLTTTREDFW-LTAPHYDTVGEIKRALRAA-----EGV--DPLSQRIFFSGGVLVDKTDLEECKIEKGQ 211 (231)
T ss_pred chHHHhhhhhhhee-ecccCcCcHHHHHHHHHHh-----hcc--chhhheeeccCCceeccccceeeeecCCC
Confidence 3444555 777777 8889999999999999854 333 25799999999999999999999999884
No 66
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0032 Score=40.28 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=51.0
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
+++.+..--|+.+. +...+++||.++|..|+.+ .|.- ++.+.|=--+-+++|.-+|++|.|.+|-
T Consensus 2 iev~~nDrLGKKVR-vKCn~dDtiGD~KKliaaQ-----tGT~--~~kivl~k~~~i~kd~I~L~dyeihdg~ 66 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVR-VKCNTDDTIGDLKKLIAAQ-----TGTR--PEKIVLKKWYTIFKDHITLSDYEIHDGM 66 (73)
T ss_pred ceehhhhhcCceEE-EEeCCcccccCHHHHHHHh-----hCCC--hhHhHHHhhhhhhhcccceeeEEeccCc
Confidence 45566667799877 9999999999999999865 2322 3666666666788999999999998874
No 67
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.31 E-value=0.24 Score=32.56 Aligned_cols=70 Identities=7% Similarity=0.180 Sum_probs=54.1
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCC-CCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENG-PKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~-p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
.+.+-|+.=.|.++- +.++.--+|+.|-..+++.. .-.+ +.+-.++|..-.++.|.++..|.+|+|.+|+
T Consensus 6 kVTvD~t~y~g~~yD-Lrl~d~~pikklIdivwe~~---kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 6 KVTVDFTNYNGGTYD-LRLPDYLPIKKLIDIVWESL---KISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEEeEecCCceEE-EeccccchHHHHHHHHHHHh---hccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 456666766888866 88999989988888777432 1122 2223689999999999999999999999998
No 68
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.05 E-value=0.063 Score=34.73 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=44.5
Q ss_pred eCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccC-CCCCCCCCcceEEEEEecc
Q 033534 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR-LPVVELPGTAITMHVVLRP 93 (117)
Q Consensus 24 v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~-i~~g~~p~~~~t~Hlv~~~ 93 (117)
|.++++|.+|++.|... .+... -....|.+.|+.|+|...|++.. +++|. +++|+..+
T Consensus 1 v~~~d~v~dvrq~L~~~----~~t~~--~Tn~~L~~~g~~L~~~~el~~i~~~~~~~------~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES----PETCY--LTNFSLEHNGQRLDDFVELSEIEGIKDGC------VLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhC----ccccc--eeEEEEEECCCccCCchhhhhhhCCCCCc------EEEEEecC
Confidence 46889999999999843 11122 37889999999999988888875 77765 88888654
No 69
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=93.54 E-value=0.5 Score=29.60 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEeccC
Q 033534 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 94 (117)
Q Consensus 15 ~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~~~ 94 (117)
.|.....++++++.||.+|.+.+..++|.. .+.. ....++...|+... .+..+.+|+ .+.++....
T Consensus 13 ~g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~~~--~~~~~v~vNg~~v~-----~~~~l~~gD------~v~i~ppv~ 78 (80)
T cd00754 13 AGKDEEELELPEGATVGELLDALEARYPGL-LEEL--LARVRIAVNGEYVR-----LDTPLKDGD------EVAIIPPVS 78 (80)
T ss_pred hCCceEEEECCCCCcHHHHHHHHHHHCchH-HHhh--hhcEEEEECCeEcC-----CCcccCCCC------EEEEeCCCC
Confidence 355423478888999999999999887641 1111 25677888898887 345678888 777654443
No 70
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.36 Score=37.39 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=43.7
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeE-EEcC-----eecC-CCccccccCCCCCCCCCcceEEEEEe
Q 033534 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL-IHAG-----KILE-DNMTIAESRLPVVELPGTAITMHVVL 91 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrL-I~~G-----k~L~-D~~tL~~~~i~~g~~p~~~~t~Hlv~ 91 (117)
-.+++++||+++|.+++- ..+.+ ++.++| +|.| -.|. ++..|..|+..+|- .+|++=
T Consensus 17 kr~~~~ltl~q~K~KLe~-----~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~------rihviD 80 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLEL-----LTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDGL------RIHVID 80 (234)
T ss_pred hhcCCcCcHHHHHhhhhh-----hhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCce------EEEEEe
Confidence 667899999999999973 34555 588888 6776 2464 57789999999986 888653
No 71
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.87 E-value=1 Score=28.13 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=50.6
Q ss_pred EEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE----cC--eecCCCccccccCCCCCCCCCcc
Q 033534 11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH----AG--KILEDNMTIAESRLPVVELPGTA 84 (117)
Q Consensus 11 ~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~----~G--k~L~D~~tL~~~~i~~g~~p~~~ 84 (117)
|++++|.... +++++++|+.+|=+.|..+ -++. ..+..=|.| .| ..|+.+++|.+.....+. +
T Consensus 1 V~llD~~~~~-~~v~~~~t~~~l~~~v~~~-----l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~----~ 69 (80)
T PF09379_consen 1 VRLLDGTTKT-FEVDPKTTGQDLLEQVCDK-----LGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNP----P 69 (80)
T ss_dssp EEESSEEEEE-EEEETTSBHHHHHHHHHHH-----HTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSS----S
T ss_pred CCCcCCCcEE-EEEcCCCcHHHHHHHHHHH-----cCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCCC----C
Confidence 4678898865 9999999999999999854 3454 357777777 33 368888888888655222 4
Q ss_pred eEEEEEec
Q 033534 85 ITMHVVLR 92 (117)
Q Consensus 85 ~t~Hlv~~ 92 (117)
.++|+-++
T Consensus 70 ~~l~frvk 77 (80)
T PF09379_consen 70 FTLYFRVK 77 (80)
T ss_dssp EEEEEEES
T ss_pred EEEEEEEE
Confidence 57776554
No 72
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=92.47 E-value=0.28 Score=40.74 Aligned_cols=67 Identities=27% Similarity=0.379 Sum_probs=49.3
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--EcCeec-CCCccccccCCCCC
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKIL-EDNMTIAESRLPVV 78 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L-~D~~tL~~~~i~~g 78 (117)
.+=+|.||+.+|+.+. ..|+-+-||.+|+..|...=|.+ +. ..+-|+ |=-|.| +|+.||++++|...
T Consensus 304 PtTsIQIRLanG~RlV-~~fN~sHTv~DIR~fI~~aRp~~----~~--~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLV-LKFNHSHTVSDIREFIDTARPGD----SS--TYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred CcceEEEEecCCceee-eeccCcccHHHHHHHHHhcCCCC----cC--CceeeeecCCCcccCCcchhHHhccchhh
Confidence 4557888999999987 89999999999999998654432 11 234443 334566 56899999999863
No 73
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.12 E-value=0.62 Score=29.63 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=39.7
Q ss_pred cCCCeeeeEEeCCC-ccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPT-TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~-~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
..|+...+++++.+ .||.+|++.|.+..|.-.. ....+++...|+...+ +..|++|+
T Consensus 12 ~~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~----~~~~~~v~vn~~~v~~-----~~~l~dgD 69 (80)
T TIGR01682 12 QAGTDEETLELPDESTTVGELKEHLAKEGPELAA----SRGQVMVAVNEEYVTD-----DALLNEGD 69 (80)
T ss_pred HhCCCeEEEECCCCCcCHHHHHHHHHHhCchhhh----hccceEEEECCEEcCC-----CcCcCCCC
Confidence 35655335888877 9999999999987662111 1245678888888875 35677787
No 74
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=91.52 E-value=0.82 Score=29.45 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=44.3
Q ss_pred CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCC----CCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEE
Q 033534 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK----TVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 90 (117)
Q Consensus 15 ~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~----~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv 90 (117)
.|+.-.+++++ ..||.+|.+.+.+++|..+..+-. --..+++...|+...+... ..+++|+ .+.+.
T Consensus 13 ~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd------ev~i~ 82 (88)
T TIGR01687 13 TGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD------VVAIF 82 (88)
T ss_pred hCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC------EEEEe
Confidence 46532237776 899999999999988753321100 0135778888888765432 5678888 67655
Q ss_pred eccC
Q 033534 91 LRPS 94 (117)
Q Consensus 91 ~~~~ 94 (117)
....
T Consensus 83 Ppvs 86 (88)
T TIGR01687 83 PPVS 86 (88)
T ss_pred CCCc
Confidence 4433
No 75
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.28 E-value=0.55 Score=37.41 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=49.7
Q ss_pred EEEEecCC-CeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCC-CCcceeEEEcCeecCCCccccccCCCCCCCCCcceE
Q 033534 9 LKFRLADG-ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK-TVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 9 i~~k~~~G-~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~-~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
|++..-++ -.+...+.+...||.|+++.+..+ +..-.|. ....+|+--+|+.|.|+.+|++++...|+ +
T Consensus 3 It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~---~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~------~ 73 (297)
T KOG1639|consen 3 ITIASRSKGLRIKEKDLSGSETIDDLLKAISAK---NLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA------T 73 (297)
T ss_pred eeeeccCCCceeeeecCCCCCcHHHHHHHHHHh---hhccCccchhheeeccCCCccccchhHHHHhccCCCC------E
Confidence 44443333 233336677889999999888754 2221120 12345556679999999999999998886 5
Q ss_pred EEEEeccCCCC
Q 033534 87 MHVVLRPSLPD 97 (117)
Q Consensus 87 ~Hlv~~~~~~~ 97 (117)
+. ++..|++
T Consensus 74 i~--vKDLGpQ 82 (297)
T KOG1639|consen 74 IY--VKDLGPQ 82 (297)
T ss_pred EE--EeccCCc
Confidence 54 5555554
No 76
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=91.24 E-value=1 Score=27.83 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=45.7
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEecc
Q 033534 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 93 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~~ 93 (117)
.+.++...||.+|.+.+..++|... . ....++...|+...+ . -.+..+.+|+ .+.++...
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~---~--~~~~~v~vN~~~v~~-~-~~~~~l~~gD------~V~i~ppv 74 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELA---L--RDRVAVAVNGEIVPD-D-GLDTPLKDGD------EVAILPPV 74 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGH---T--TTTEEEEETTEEEGG-G-TTTSBEETTE------EEEEEEST
T ss_pred EEecCCCCcHHHHHHHHHhhccccc---c--CccEEEEECCEEcCC-c-cCCcCcCCCC------EEEEECCC
Confidence 3889999999999999998876544 1 378999999999988 2 4455667787 66655443
No 77
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=90.47 E-value=2.5 Score=28.81 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=53.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCc-ceeEEEcCe--ecCCCccccccC-----CC
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLIHAGK--ILEDNMTIAESR-----LP 76 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~-~qrLI~~Gk--~L~D~~tL~~~~-----i~ 76 (117)
..+.|.+..-..+...++.++++.|+.+|.+.+..++ ....+....++ +-.|=-.|+ .|..+..|.++. +.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~ 94 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLK 94 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHh
Confidence 4666777665545444699999999999999988765 22222222223 455544566 577778888886 66
Q ss_pred CCCCCCcceEEEEEecc
Q 033534 77 VVELPGTAITMHVVLRP 93 (117)
Q Consensus 77 ~g~~p~~~~t~Hlv~~~ 93 (117)
.|. .+||++..
T Consensus 95 ~~~------~~~L~L~~ 105 (108)
T smart00144 95 NGR------EPHLVLMT 105 (108)
T ss_pred cCC------CceEEEEe
Confidence 666 66776654
No 78
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=90.26 E-value=1.4 Score=27.75 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=38.1
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
-+++.+. +.+.|++++.+|=+....++ ++. +++=.|.|.+|.|+-+.++.-.|++.|.
T Consensus 4 ~~~rr~~-vkvtp~~~l~~VL~eac~k~-----~l~--~~~~~L~h~~k~ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 4 YNFRRFK-VKVTPNTTLNQVLEEACKKF-----GLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNA 61 (65)
T ss_dssp TTS-EEE-E---TTSBHHHHHHHHHHHT-----T----GGG-EEEETTEEESSS-BHHHH---SS-
T ss_pred cCCcEEE-EEECCCCCHHHHHHHHHHHc-----CCC--ccceEEEECCEEeccccceeecCCCCCC
Confidence 4666755 99999999999988877553 443 4788999999999999999999999886
No 79
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.13 E-value=2.9 Score=26.57 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=35.7
Q ss_pred CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 15 ~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
.|....+++++..+||.+|.+.+..+.|. ..... ....+...|+...++ .-+.+|+
T Consensus 16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~-l~~~~---~~~~vavN~~~v~~~-----~~l~dgD 71 (82)
T PLN02799 16 TGVSDMTLELPAGSTTADCLAELVAKFPS-LEEVR---SCCVLALNEEYTTES-----AALKDGD 71 (82)
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHChh-HHHHh---hCcEEEECCEEcCCC-----cCcCCCC
Confidence 45443458899999999999999866442 11110 223466778876543 3467777
No 80
>PRK06437 hypothetical protein; Provisional
Probab=90.10 E-value=3.2 Score=25.90 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=36.4
Q ss_pred ecCC-CeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 13 LADG-ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 13 ~~~G-~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
+++| +. .+++++++.||++|=+.+ +++ +..+-+...|+++. .+.-+.+||
T Consensus 6 ~v~g~~~-~~~~i~~~~tv~dLL~~L---------gi~--~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 6 RVKGHIN-KTIEIDHELTVNDIIKDL---------GLD--EEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred EecCCcc-eEEEcCCCCcHHHHHHHc---------CCC--CccEEEEECCEECC-----CceEcCCCC
Confidence 3345 44 348999999999987776 343 47888999999997 445667777
No 81
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=86.52 E-value=5.2 Score=24.39 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=36.0
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++|+. +++++..||.+|.+.+. ++ ...+.+...|+++..+. -.+..|.+||
T Consensus 4 iNg~~---~~~~~~~tv~~ll~~l~---------~~--~~~i~V~vNg~~v~~~~-~~~~~L~~gD 54 (65)
T cd00565 4 VNGEP---REVEEGATLAELLEELG---------LD--PRGVAVALNGEIVPRSE-WASTPLQDGD 54 (65)
T ss_pred ECCeE---EEcCCCCCHHHHHHHcC---------CC--CCcEEEEECCEEcCHHH-cCceecCCCC
Confidence 45643 78889999999998883 22 47888999999885441 1223567777
No 82
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=86.50 E-value=2.3 Score=26.25 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=32.8
Q ss_pred CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 15 ~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
+|+. ++++++.|..+||.++.. +.=-+||.|-..+++..| .+||
T Consensus 6 N~k~---~~~~~~~tl~~lr~~~k~-------------~~DI~I~NGF~~~~d~~L-----~e~D 49 (57)
T PF14453_consen 6 NEKE---IETEENTTLFELRKESKP-------------DADIVILNGFPTKEDIEL-----KEGD 49 (57)
T ss_pred CCEE---EEcCCCcCHHHHHHhhCC-------------CCCEEEEcCcccCCcccc-----CCCC
Confidence 5653 889999999999999852 122569999988877654 5566
No 83
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=84.26 E-value=3 Score=29.99 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=44.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC------eecCCCccccccCC
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG------KILEDNMTIAESRL 75 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G------k~L~D~~tL~~~~i 75 (117)
..+.|+|.+.+|.... +.+++++||++|-+.++.+ -+++ .....-|.+.. ..|+...+|.+...
T Consensus 2 ~~~~~~V~l~dg~~~~-~~~~~~~t~~ev~~~v~~~-----~~l~-~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~ 71 (207)
T smart00295 2 KPRVLKVYLLDGTTLE-FEVDSSTTAEELLETVCRK-----LGIR-ESEYFGLQFEDPDEDLSHWLDPAKTLLDQDV 71 (207)
T ss_pred CcEEEEEEecCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC-ccceeEEEEEcCCCCcCeeCCCccCHHHhcC
Confidence 3578899999999866 9999999999999999854 3453 24555554321 35665556555543
No 84
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=83.07 E-value=11 Score=24.79 Aligned_cols=63 Identities=6% Similarity=0.139 Sum_probs=42.5
Q ss_pred CCCCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 1 ~~~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
|++...+.+++ +++|+. .+++++.||.+|=+.+ +++ +..+-+-+.|.++.- ..-++.-+.+||
T Consensus 11 ~~~~~~~~m~I-~VNG~~---~~~~~~~tl~~LL~~l---------~~~--~~~vAVevNg~iVpr-~~w~~t~L~egD 73 (84)
T PRK06083 11 TEGAAMVLITI-SINDQS---IQVDISSSLAQIIAQL---------SLP--ELGCVFAINNQVVPR-SEWQSTVLSSGD 73 (84)
T ss_pred ccCCCCceEEE-EECCeE---EEcCCCCcHHHHHHHc---------CCC--CceEEEEECCEEeCH-HHcCcccCCCCC
Confidence 56666666666 448864 7888899998886665 233 366677788988842 234555688887
No 85
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=83.04 E-value=2.9 Score=27.85 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=29.6
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhC
Q 033534 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRW 41 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~w 41 (117)
..||+...|..+. |.+.|+.++.+|++.|+.+.
T Consensus 2 ~FK~~~~~GrvhR-f~~~~s~~~~~L~~~I~~Rl 34 (86)
T cd06409 2 AFKFKDPKGRVHR-FRLRPSESLEELRTLISQRL 34 (86)
T ss_pred cEEeeCCCCCEEE-EEecCCCCHHHHHHHHHHHh
Confidence 3688999999987 99999999999999999775
No 86
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=82.40 E-value=6.9 Score=26.10 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=37.4
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCC--CCCC-cceeEEEcC--eecCCCccccccCCCCCC
Q 033534 22 SKFSPTTTVASLKEKIISRWPKEKENG--PKTV-NNVQLIHAG--KILEDNMTIAESRLPVVE 79 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~--p~~~-~~qrLI~~G--k~L~D~~tL~~~~i~~g~ 79 (117)
+-|+..+|+.++-++++.+ ..|+ +..+ .-+|+-+.| +.+..+.++++.||..-+
T Consensus 19 v~VDt~dTmdqVA~k~A~H----sVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e 77 (85)
T PF06234_consen 19 VPVDTEDTMDQVAAKVAHH----SVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPME 77 (85)
T ss_dssp EEEETT-BHHHHHHHHHTT----TTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTE
T ss_pred EEeCCCCcHHHHHHHHhhh----hcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcce
Confidence 6789999999999999865 1222 1112 478888999 999999999999998755
No 87
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=81.47 E-value=9.6 Score=23.14 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=35.3
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++|+. +++++++||.+|.+.+. ++ +....+.+.|+++.-++ -.+..+.+||
T Consensus 3 iNg~~---~~~~~~~tv~~ll~~l~---------~~--~~~v~v~vN~~iv~~~~-~~~~~L~~gD 53 (64)
T TIGR01683 3 VNGEP---VEVEDGLTLAALLESLG---------LD--PRRVAVAVNGEIVPRSE-WDDTILKEGD 53 (64)
T ss_pred ECCeE---EEcCCCCcHHHHHHHcC---------CC--CCeEEEEECCEEcCHHH-cCceecCCCC
Confidence 46754 78889999999998873 32 47788889999884221 2234577777
No 88
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=81.27 E-value=3.3 Score=26.82 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=24.4
Q ss_pred EEEEecCCCeeeeEEeC-CCccHHHHHHHHHhh
Q 033534 9 LKFRLADGADIGPSKFS-PTTTVASLKEKIISR 40 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~-~~~tV~~lK~~I~~~ 40 (117)
|.+|+.+.+....+.|+ ...+|.+||..|..+
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 45666777776778885 678999999999854
No 89
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=78.06 E-value=13 Score=32.54 Aligned_cols=83 Identities=24% Similarity=0.369 Sum_probs=47.3
Q ss_pred ceEEEEEEecCC-CeeeeEEeCCCccHHHHHHHHHhh-C-CCcccCCCCCCcceeEEE-cC---e-ecCCCc--------
Q 033534 5 DLIELKFRLADG-ADIGPSKFSPTTTVASLKEKIISR-W-PKEKENGPKTVNNVQLIH-AG---K-ILEDNM-------- 68 (117)
Q Consensus 5 ~~~~i~~k~~~G-~~~~~~~v~~~~tV~~lK~~I~~~-w-p~~~~~~p~~~~~qrLI~-~G---k-~L~D~~-------- 68 (117)
..+.|.+....+ ....++.|=.-+||.++|+||... | .......| .++++-|-+ .| + +|.|.+
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp-~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRP-RADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCC-CccccceeeecCCCCcccccCCCCCcccCCC
Confidence 345566443322 221247777889999999999853 2 11122344 367777733 23 3 677643
Q ss_pred -----cccccCCCCCCCCCcceEEEEEeccC
Q 033534 69 -----TIAESRLPVVELPGTAITMHVVLRPS 94 (117)
Q Consensus 69 -----tL~~~~i~~g~~p~~~~t~Hlv~~~~ 94 (117)
||+.|+|++|+ +|-|+.+..
T Consensus 267 wkrLNTL~HY~V~dga------~vaLv~k~~ 291 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGA------TVALVPKQH 291 (539)
T ss_dssp EEE--BHHHHT--TTE------EEEEEES--
T ss_pred ceEeccHhhcCCCCCc------eEEEeeccc
Confidence 38899999997 888777753
No 90
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=76.69 E-value=0.8 Score=37.17 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=0.0
Q ss_pred ceEEEEEEecCCCeeeeEEe---CC--CccHHHHHHHHHhhC-CCc----ccCCCCCCccee-----EEEcCeecCCCcc
Q 033534 5 DLIELKFRLADGADIGPSKF---SP--TTTVASLKEKIISRW-PKE----KENGPKTVNNVQ-----LIHAGKILEDNMT 69 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v---~~--~~tV~~lK~~I~~~w-p~~----~~~~p~~~~~qr-----LI~~Gk~L~D~~t 69 (117)
..|.|.+|.+-.-.+. +.+ .| ++||.++|+.++.+- +.+ .+.+|. +-+| |+|.-|.+-|++|
T Consensus 77 ~sItV~Lks~rnp~l~-i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~--dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 77 KSITVHLKSLRNPPLD-ISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPL--DKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCCce-eEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCH--HHhhhhhhhheecCccCCCcCc
Confidence 4566666655333221 222 23 699999999998521 111 345664 8888 9999999999999
Q ss_pred ccccCCC
Q 033534 70 IAESRLP 76 (117)
Q Consensus 70 L~~~~i~ 76 (117)
|.+.--.
T Consensus 154 l~e~l~~ 160 (309)
T PF12754_consen 154 LAEVLAD 160 (309)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 8877533
No 91
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=76.29 E-value=10 Score=24.98 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=33.0
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCe
Q 033534 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk 62 (117)
-|++.+-. ++. +.+++..+..+|.++|.++ -.+| ++.++|-|.-.
T Consensus 4 vvKV~f~~--tIa-Irvp~~~~y~~L~~ki~~k-----Lkl~--~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFKY--TVA-IQVARGLSYATLLQKISSK-----LELP--AEHITLSYKSE 48 (80)
T ss_pred EEEEEEEE--EEE-EEcCCCCCHHHHHHHHHHH-----hCCC--chhcEEEeccC
Confidence 34444432 666 9999999999999999854 3565 48899988643
No 92
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=75.77 E-value=11 Score=32.20 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=52.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc----Cee--cCCCccccccCCCCCCC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA----GKI--LEDNMTIAESRLPVVEL 80 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~----Gk~--L~D~~tL~~~~i~~g~~ 80 (117)
|-++||...|.. . +++.++++.+.|-.+|....-. .++|+++.+.-+ |-+ +..++|+.++|+..|.
T Consensus 1 Mi~rfRsk~G~~-R-ve~qe~d~lg~l~~kll~~~~~-----n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGq- 72 (571)
T COG5100 1 MIFRFRSKEGQR-R-VEVQESDVLGMLSPKLLAFFEV-----NYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQ- 72 (571)
T ss_pred CeEEEecCCCce-e-eeccccchhhhhhHHHHhhhcc-----CCCccceEEEeCCCCCceeeecccccChhhhccccCc-
Confidence 358899999977 5 9999999999999999865411 134555555331 221 4567899999999998
Q ss_pred CCcceEEEEEe
Q 033534 81 PGTAITMHVVL 91 (117)
Q Consensus 81 p~~~~t~Hlv~ 91 (117)
.++|..
T Consensus 73 -----mLyl~y 78 (571)
T COG5100 73 -----MLYLEY 78 (571)
T ss_pred -----EEEEEe
Confidence 777766
No 93
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=74.64 E-value=10 Score=25.29 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=47.9
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCe--ecCCCccccccC-----CC
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK--ILEDNMTIAESR-----LP 76 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk--~L~D~~tL~~~~-----i~ 76 (117)
...+.|.+.....+.-.+|.++.+.|+.+|-+.+..++-. .-..+...++--|=-.|+ .|..+..|.+|. +.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~-~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~ 92 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLK-DLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLK 92 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHH-HTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHh-hcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHh
Confidence 3578888888855554569999999999999988866211 111211112455544555 577888888886 45
Q ss_pred CCCCCCcceEEEEEe
Q 033534 77 VVELPGTAITMHVVL 91 (117)
Q Consensus 77 ~g~~p~~~~t~Hlv~ 91 (117)
.+. .+||++
T Consensus 93 ~~~------~~~L~L 101 (106)
T PF00794_consen 93 RGK------DPHLVL 101 (106)
T ss_dssp CT--------EEEEE
T ss_pred cCC------CcEEEE
Confidence 554 566654
No 94
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=74.36 E-value=4.9 Score=27.50 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=27.3
Q ss_pred eEEEcCeecCCCccccccCCCCCCCCCcceEEEEEeccCCCCccC
Q 033534 56 QLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKG 100 (117)
Q Consensus 56 rLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~~~~~~~~~ 100 (117)
.|-|+||.|..+.+|++| +..++ .+-++|-|..+..+++.++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE--KtKiivKl~~~g~g~P~RE 44 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE--KTKIIVKLQKRGQGPPPRE 44 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc--ceeEEEEeccCCCCCCCCC
Confidence 478999999999999999 55555 2333444444444444443
No 95
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=72.42 E-value=21 Score=22.36 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=40.0
Q ss_pred eEEEEEEecCCC---eeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE-Ec---C--eecCCCcc
Q 033534 6 LIELKFRLADGA---DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-HA---G--KILEDNMT 69 (117)
Q Consensus 6 ~~~i~~k~~~G~---~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI-~~---G--k~L~D~~t 69 (117)
.-.|+|-..++. .+.++.+++++|+.+|-+.+.++. +++.++..-.|. +. | |.|.|++.
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~-----~l~~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKF-----GLAEDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHT-----TTSSSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHh-----CCCCCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 345677677676 145699999999999999998653 344456778774 21 2 36766554
No 96
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=71.74 E-value=9.9 Score=24.28 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=36.1
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC--eecCCC
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILEDN 67 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~D~ 67 (117)
+++-+.+|.... +.+-|++||.++=+++.+. -++..+.-.+++...+ +.++.+
T Consensus 2 ~~V~LPng~~t~-V~vrpg~ti~d~L~~~c~k-----r~l~~~~~~v~~~~~~~~~~~~~~ 56 (72)
T cd01760 2 CRVYLPNGQRTV-VPVRPGMSVRDVLAKACKK-----RGLNPECCDVFLLGLDEKKPLDLD 56 (72)
T ss_pred EEEECcCCCeEE-EEECCCCCHHHHHHHHHHH-----cCCCHHHEEEEEecCCCcCCcCch
Confidence 567788998865 9999999999999998854 3444323344555455 455443
No 97
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=71.42 E-value=17 Score=22.57 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=33.2
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G 61 (117)
+.|++....+... .+.++++.|..+|+.+|++.+|.. ...++|-|..
T Consensus 2 ~~vK~~~~~~~~~-~~~~~~~~s~~~L~~~i~~~~~~~-------~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGDIRR-IISLPSDVSFDDLRSKIREKFGLL-------DEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTEEEE-EEEECSTSHHHHHHHHHHHHHTTS-------TSSEEEEEEE
T ss_pred EEEEEEECCeeEE-EEEcCCCCCHHHHHHHHHHHhCCC-------CccEEEEeeC
Confidence 4566655444433 388999999999999999776432 3678887754
No 98
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=71.40 E-value=22 Score=22.08 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=32.2
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++++++++||.+|-+.+. ++ +....+...|+++.. +..+.+||
T Consensus 17 ~~~~~~~~tv~~ll~~l~---------~~--~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 17 EIEWRKGMKVADILRAVG---------FN--TESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred EEEcCCCCcHHHHHHHcC---------CC--CccEEEEECCEECCC-----CcCcCCCC
Confidence 388899999999988872 33 366888899998854 34567777
No 99
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=70.05 E-value=13 Score=27.31 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=38.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCC-CccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCcccccc
Q 033534 4 EDLIELKFRLADGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~-~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (117)
+..+.|+++. |.. . ++++. .+.+..+++...+.+|- +. + |+-|+++....|++||
T Consensus 65 g~~veL~V~v--Gri-~-lele~~~~~ie~I~~iCee~lpf-----~y---~---i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 65 GEEVELTVKV--GRI-I-LELEDEEDVIEKIREICEEVLPF-----GY---D---IKEGKFIRTKPTVTDY 120 (153)
T ss_pred CEEEEEEEEE--eEE-E-EEecCcHHHHHHHHHHHHHhCCC-----ce---E---eeeeEEeccCCchhhh
Confidence 4456677765 755 4 78887 77888887777654432 11 2 3569999999999998
No 100
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=69.06 E-value=9.6 Score=24.84 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=23.9
Q ss_pred EEEecCCCeeeeEEeCCCccHHHHHHHHHhhC
Q 033534 10 KFRLADGADIGPSKFSPTTTVASLKEKIISRW 41 (117)
Q Consensus 10 ~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~w 41 (117)
+||..-|..+.-|.++++.+..+|+++|++..
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~ 33 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRF 33 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444344444599999999999999999765
No 101
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=68.86 E-value=20 Score=23.37 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=31.4
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE-cCeecCCCccccccCCCCCC
Q 033534 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH-AGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~-~Gk~L~D~~tL~~~~i~~g~ 79 (117)
+.+++.+||+++-+.+ |+|. .++.+|. .|+.-+= ++.+.+|+
T Consensus 27 ~~~~~~~tvkd~IEsL---------GVP~--tEV~~i~vNG~~v~~-----~~~~~~Gd 69 (81)
T PF14451_consen 27 HPFDGGATVKDVIESL---------GVPH--TEVGLILVNGRPVDF-----DYRLKDGD 69 (81)
T ss_pred EecCCCCcHHHHHHHc---------CCCh--HHeEEEEECCEECCC-----cccCCCCC
Confidence 7889999999998877 7885 7777764 5554432 47788888
No 102
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=66.64 E-value=25 Score=21.77 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=31.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEc
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~ 60 (117)
+.|+++. |..+..+.++++.|-.+|+.+|....+ .+ ....+|-|.
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~-----~~--~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFG-----LD--NQSFTLKYQ 46 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhC-----CC--CCCeEEEEE
Confidence 4556655 444455999999999999999986643 22 256777776
No 103
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=66.61 E-value=5.8 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.1
Q ss_pred eEEeCCCccHHHHHHHHHhh
Q 033534 21 PSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~ 40 (117)
+++++.++|+.++|+.++++
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHH
T ss_pred EEEccCcCcHHHHHHHHHHH
Confidence 48899999999999999965
No 104
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=66.45 E-value=16 Score=24.35 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=40.5
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhC----CCcccCCCCCCcceeEEEcCeecCCCcccccc
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRW----PKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~w----p~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (117)
.-|+|-..+|.... +.|++.+|+.++-+.++.+= ..+|. . .+..=-++--|.++|-+.|.+.
T Consensus 3 ~vvkv~~~Dg~sK~-l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~-L---vE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKS-LEVDERMTARDVCQLLVDKNHCQDDSSWT-L---VEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeE-EEEcCCCcHHHHHHHHHHHhCCCCCCCeE-E---EEecchhhhhhhccchHHHHHH
Confidence 45788888998865 99999999999999998530 00111 0 1122224557788887765544
No 105
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=66.22 E-value=32 Score=22.07 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=45.0
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeE-EEcCeecCCCccccccCCCCCCCCCcceEEEEEec
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL-IHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 92 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrL-I~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~ 92 (117)
++|..+. ++..++.-.-.+.++-.++ +.-.+.|+ +.--| =-+|.+|+-++.++|||+..+- ++.|.++
T Consensus 3 VNGqPv~-VEANvnaPLh~v~akALe~--sgNvgQP~--ENWElkDe~G~vlD~~kKveD~Gftngv------kLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQ-VEANVNAPLHPVRAKALEQ--SGNVGQPP--ENWELKDESGQVLDVNKKVEDFGFTNGV------KLFLSLK 71 (76)
T ss_pred eCCCcee-eecCCCCcchHHHHHHHhh--ccccCCCc--ccceeeccCCcEeeccchhhhccccccc------eEEEEee
Confidence 5676654 7777777777776665543 11223332 33333 2478889989999999999875 8887775
Q ss_pred c
Q 033534 93 P 93 (117)
Q Consensus 93 ~ 93 (117)
.
T Consensus 72 A 72 (76)
T PF10790_consen 72 A 72 (76)
T ss_pred c
Confidence 4
No 106
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=65.78 E-value=31 Score=21.73 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE--E----cCeecCCCcc
Q 033534 16 GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--H----AGKILEDNMT 69 (117)
Q Consensus 16 G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~----~Gk~L~D~~t 69 (117)
+.++.++.|++++|..+|-+.+.++. ++..++..-.|+ + ..|.|+|++.
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~-----~l~~~~~~y~L~ev~~~~~~er~L~~~e~ 65 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKF-----GLDDDPEDYALVEVLGDGGLERLLLPDEC 65 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHh-----CCcCCcccEEEEEEECCceEEEEeCCCCC
Confidence 34556699999999999999998653 232234566664 2 3456766554
No 107
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=65.03 E-value=13 Score=26.39 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=33.2
Q ss_pred EeCC-CccHHHHHHHHHhhCCCccc-----CCCCCCcceeEEEcC-----------------eec---CCCccccccCCC
Q 033534 23 KFSP-TTTVASLKEKIISRWPKEKE-----NGPKTVNNVQLIHAG-----------------KIL---EDNMTIAESRLP 76 (117)
Q Consensus 23 ~v~~-~~tV~~lK~~I~~~wp~~~~-----~~p~~~~~qrLI~~G-----------------k~L---~D~~tL~~~~i~ 76 (117)
.++- ++||++|++.+.++=+.... .... +.+|+++.. -+| +++.||.++||.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~y--DtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~ 98 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKY--DTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVE 98 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeec--ceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCC
Confidence 3665 89999999999865222111 1222 556665542 356 667778888877
Q ss_pred CC
Q 033534 77 VV 78 (117)
Q Consensus 77 ~g 78 (117)
..
T Consensus 99 nE 100 (122)
T PF10209_consen 99 NE 100 (122)
T ss_pred cc
Confidence 54
No 108
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=64.62 E-value=3.5 Score=33.45 Aligned_cols=49 Identities=39% Similarity=0.495 Sum_probs=38.3
Q ss_pred cCCCeeeeEEeC-CCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccc
Q 033534 14 ADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTI 70 (117)
Q Consensus 14 ~~G~~~~~~~v~-~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL 70 (117)
.+|..+. +.+. -+..|..+|+++. +..++++ +.|++.|.|.+|.|+.++
T Consensus 290 ~dg~~~~-~~~~~~~~~~~~~k~k~~-----~~~~i~~--~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIK-ITVQSLSENVASLKEKIA-----DESQIPA--NKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceee-eccccccccccccccccc-----cccccch--hheeeccCCcccCccccc
Confidence 3666655 5555 6778899999996 5667874 999999999999998544
No 109
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=64.36 E-value=62 Score=27.40 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=52.7
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEE-EcCeecCCCccccccCCCCCCCCCcceE
Q 033534 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-HAGKILEDNMTIAESRLPVVELPGTAIT 86 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~g~~p~~~~t 86 (117)
+|++..... . ..+-++.+..|.+|=-.|.+.-.++..+ +..+..-.|- -.|..|+-+.||.+.+|.+|+ +
T Consensus 4 RVtV~~~~~-~-~DlaLPa~~PvaellP~ll~~~~~~~~~-~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~------~ 74 (452)
T TIGR02958 4 RVTVLAGRR-A-VDVALPADVPVAELIPDLVDLLDDRGAA-ELGAVRWALARAGGSPLDPDASLAEAGVRDGE------L 74 (452)
T ss_pred EEEEeeCCe-e-eeeecCCCCcHHHHHHHHHHHhCccccc-CCCCcceEEecCCCCCCCCCCCHHHcCCCCCC------e
Confidence 455654332 2 3478899999999988887543111100 1112334443 256799999999999999999 9
Q ss_pred EEEEeccCCCC
Q 033534 87 MHVVLRPSLPD 97 (117)
Q Consensus 87 ~Hlv~~~~~~~ 97 (117)
+||..+....+
T Consensus 75 L~L~p~~~~~p 85 (452)
T TIGR02958 75 LVLVPASATEP 85 (452)
T ss_pred EEEeeCCCCCC
Confidence 99887554443
No 110
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=61.38 E-value=24 Score=25.91 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=39.2
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCcccccc
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (117)
+..+.|+++. |.. . ++++..+.+.++++...+-+|= +. -|.-|+++.+..|++||
T Consensus 64 g~~veL~V~V--GrI-~-le~~~~~~i~~I~eiC~e~~pF-----~y------~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 64 GEDVELRVQV--GRI-I-LELEDEDIVEEIEEICKEMLPF-----GY------EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred CEEEEEEEEE--eEE-E-EEecCHHHHHHHHHHHHhhCCC-----ce------EeeeeeEeecCCchhhh
Confidence 4556667665 755 4 7777888888998887655442 11 14679999999999998
No 111
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=58.71 E-value=37 Score=20.25 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=36.7
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEEec
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 92 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv~~ 92 (117)
++|+. +++++..||.+|-+.+. ++ ..+.+-+.|++...+. -.+.-+.+|| .+.++.-
T Consensus 5 vNg~~---~~~~~~~tl~~ll~~l~---------~~---~~~~v~vN~~~v~~~~-~~~~~L~~gD------~vei~~~ 61 (65)
T PRK06944 5 LNQQT---LSLPDGATVADALAAYG---------AR---PPFAVAVNGDFVARTQ-HAARALAAGD------RLDLVQP 61 (65)
T ss_pred ECCEE---EECCCCCcHHHHHHhhC---------CC---CCeEEEECCEEcCchh-cccccCCCCC------EEEEEee
Confidence 46754 78888999999988873 21 2467788888875321 1223467787 6665443
No 112
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=58.51 E-value=11 Score=24.75 Aligned_cols=20 Identities=10% Similarity=0.305 Sum_probs=17.9
Q ss_pred eEEeCCCccHHHHHHHHHhh
Q 033534 21 PSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~ 40 (117)
++.++.++|+.++|+.++++
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eEEccccccHHHHHHHHHHH
Confidence 38899999999999999865
No 113
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=57.18 E-value=40 Score=20.19 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=33.3
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++|+. +++++..||.+|=+.+ +++ ...+-+.+.|.++.-.. -.+.-+.+||
T Consensus 5 vNG~~---~~~~~~~tl~~lL~~l---------~~~--~~~vav~vNg~iv~r~~-~~~~~l~~gD 55 (66)
T PRK05659 5 LNGEP---RELPDGESVAALLARE---------GLA--GRRVAVEVNGEIVPRSQ-HASTALREGD 55 (66)
T ss_pred ECCeE---EEcCCCCCHHHHHHhc---------CCC--CCeEEEEECCeEeCHHH-cCcccCCCCC
Confidence 47764 7888899999887665 233 36777888888775221 2223467776
No 114
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=56.87 E-value=34 Score=22.13 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=27.6
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHh
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIIS 39 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~ 39 (117)
+|+|.|++.-..|..+. +-+++--.|.-+++.|..
T Consensus 15 gddI~itVl~i~gnqVk-iGi~APk~v~I~R~Eiy~ 49 (73)
T COG1551 15 GDDIEITVLSIKGNQVK-IGINAPKEVSIHREEIYQ 49 (73)
T ss_pred cCCeEEEEEEEcCCeEE-EeecCChhhhHHHHHHHH
Confidence 58999999999999988 888777777666665553
No 115
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=55.76 E-value=45 Score=20.30 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=35.4
Q ss_pred ecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 13 ~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
+++|+. ++++++.|+.+|=+.+ +++ +..+-+.+.|.++.-++- +.+ +++||
T Consensus 4 ~vNG~~---~~~~~~~tl~~ll~~l---------~~~--~~~vav~~N~~iv~r~~~-~~~-L~~gD 54 (65)
T PRK05863 4 VVNEEQ---VEVDEQTTVAALLDSL---------GFP--EKGIAVAVDWSVLPRSDW-ATK-LRDGA 54 (65)
T ss_pred EECCEE---EEcCCCCcHHHHHHHc---------CCC--CCcEEEEECCcCcChhHh-hhh-cCCCC
Confidence 347754 7788888988886665 343 478899999998854432 234 78888
No 116
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=53.87 E-value=48 Score=30.05 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=37.5
Q ss_pred EEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCC
Q 033534 11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66 (117)
Q Consensus 11 ~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D 66 (117)
|-+.++..+. +.++++.|+..+++.|... .++|. ..|-|+|.|.....
T Consensus 319 Fs~~~~~~~~-~~~~~~ntl~~~~~~I~~~-----Tgipe--~~qeLL~e~~~~h~ 366 (732)
T KOG4250|consen 319 FSMVQATSHE-YYVHADNTLHSLIERISKQ-----TGIPE--GKQELLFEGGLSHL 366 (732)
T ss_pred EeeccceEEE-EecChhhhHHHHHHHHHHh-----hCCCC--ccceeeeecCcccc
Confidence 4455666665 8999999999999999843 67874 88999999885433
No 117
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=51.43 E-value=23 Score=21.83 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=24.2
Q ss_pred EEEEEecCCCeeeeEEeC-CCccHHHHHHHHHhhCC
Q 033534 8 ELKFRLADGADIGPSKFS-PTTTVASLKEKIISRWP 42 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~-~~~tV~~lK~~I~~~wp 42 (117)
.|+++..+ .... +.++ .+.|..+|+++|.+.++
T Consensus 2 ~vK~~~~~-~~~~-~~~~~~~~s~~~L~~~i~~~~~ 35 (81)
T cd05992 2 RVKVKYGG-EIRR-FVVVSRSISFEDLRSKIAEKFG 35 (81)
T ss_pred cEEEEecC-CCEE-EEEecCCCCHHHHHHHHHHHhC
Confidence 45555543 3434 8888 99999999999997753
No 118
>smart00455 RBD Raf-like Ras-binding domain.
Probab=50.37 E-value=61 Score=20.27 Aligned_cols=49 Identities=22% Similarity=0.197 Sum_probs=36.6
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC--eecC
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILE 65 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~ 65 (117)
.++-+.+|+... +.+-|+.||.++=+++.+. -++. ++...|...| +.|+
T Consensus 2 ~~v~LP~~~~~~-V~vrpg~tl~e~L~~~~~k-----r~l~--~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTV-VKVRPGKTVRDALAKALKK-----RGLN--PECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEE-EEECCCCCHHHHHHHHHHH-----cCCC--HHHEEEEEcCCCccee
Confidence 466778999876 9999999999999999854 3443 5777777655 4554
No 119
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=50.29 E-value=22 Score=25.92 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=41.4
Q ss_pred CccHHHHHHHHHhhCCCccc-C---------------CCCCCcceeEEEcCee-cCCCccccccCCCCCCCCCcceEEEE
Q 033534 27 TTTVASLKEKIISRWPKEKE-N---------------GPKTVNNVQLIHAGKI-LEDNMTIAESRLPVVELPGTAITMHV 89 (117)
Q Consensus 27 ~~tV~~lK~~I~~~wp~~~~-~---------------~p~~~~~qrLI~~Gk~-L~D~~tL~~~~i~~g~~p~~~~t~Hl 89 (117)
++|..+|-..|.+--|.... + .+ -+-++=-.+.|+- .+|++||.+++++-|| -+.+
T Consensus 61 datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y-~~RevG~t~~g~Kg~ddnktL~~~kf~iGD------~lDV 133 (151)
T KOG3391|consen 61 DATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRY-IVREVGTTCLGRKGIDDNKTLQQTKFEIGD------YLDV 133 (151)
T ss_pred hhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCc-eeeeecccccCcccCCccchhhhCCccccc------eEEE
Confidence 57888888888754332211 0 11 0122223445664 5899999999999999 7888
Q ss_pred EeccCCCCc
Q 033534 90 VLRPSLPDK 98 (117)
Q Consensus 90 v~~~~~~~~ 98 (117)
.+.++.-.+
T Consensus 134 aI~~p~~~~ 142 (151)
T KOG3391|consen 134 AITPPNRRP 142 (151)
T ss_pred EecCcccCC
Confidence 777765543
No 120
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=48.29 E-value=64 Score=20.33 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCCeeeeEEeCC-CccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 15 DGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 15 ~G~~~~~~~v~~-~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
.|.. . +++++ ..||.+|++.|.++.|. +... .....++.--.++.-.+ +..|.+||
T Consensus 14 ~g~~-~-~~v~~~~~tv~~l~~~L~~~~~~-~~~~-~~~~~~~~aVN~~~~~~-----~~~l~dgD 70 (81)
T PRK11130 14 VGTD-A-LELAADFPTVEALRQHLAQKGDR-WALA-LEDGKLLAAVNQTLVSF-----DHPLTDGD 70 (81)
T ss_pred hCCc-e-EEecCCCCCHHHHHHHHHHhCcc-HHhh-hcCCCEEEEECCEEcCC-----CCCCCCCC
Confidence 5654 2 55653 58999999999987653 2111 01234455445544332 23577777
No 121
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=47.82 E-value=54 Score=20.25 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=23.9
Q ss_pred eEEEEEEecCCCeeeeEEeC---CCccHHHHHHHH
Q 033534 6 LIELKFRLADGADIGPSKFS---PTTTVASLKEKI 37 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~---~~~tV~~lK~~I 37 (117)
.+++.|++..|+... +.++ ++-|-+++|...
T Consensus 2 tL~l~F~~~~gk~~t-i~i~~pk~~lt~~~V~~~m 35 (69)
T PF11148_consen 2 TLELVFKTEDGKTFT-ISIPNPKEDLTEAEVKAAM 35 (69)
T ss_pred EEEEEEEcCCCCEEE-EEcCCCCCCCCHHHHHHHH
Confidence 588999999999866 7774 566777777654
No 122
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=47.16 E-value=24 Score=29.33 Aligned_cols=65 Identities=25% Similarity=0.298 Sum_probs=47.5
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC---eecC--CCccccccCCCCCC
Q 033534 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---KILE--DNMTIAESRLPVVE 79 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G---k~L~--D~~tL~~~~i~~g~ 79 (117)
.|.||+.+|+... ..|-.+++|..|=..+..+ ..+-+ -...+|+++= |-|+ .+.|+.++||.+..
T Consensus 279 ~i~vR~pdG~R~q-rkf~~sepv~ll~~~~~s~----~dg~~--k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~ 348 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQ-RKFLKSEPVQLLWSFCYSH----MDGSD--KKRFKLVQAIPASKTLDYGADATFKEAGLANSE 348 (356)
T ss_pred EEEEecCCccHHH-HhhccccHHHHHHHHHHHh----hcccc--cccceeeecccchhhhhccccchHHHhccCccc
Confidence 4888999999855 7778888888776666543 33333 3788999888 5554 47899999999753
No 123
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=47.10 E-value=69 Score=23.67 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=36.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCc-cHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCcccccc
Q 033534 5 DLIELKFRLADGADIGPSKFSPTT-TVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~-tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (117)
..+.+++++ |.. . ++++..+ +++.+++-..+-+|=.++ ++-|+++....|..||
T Consensus 74 ~~~eL~Vkv--Gri-~-~eie~e~~~~e~ie~ic~e~lPf~y~-----------v~vG~F~r~kpTVTDy 128 (165)
T COG4055 74 EEIELKVKV--GRI-I-LEIEDEDETMEKIEEICDEMLPFGYE-----------VRVGKFTRRKPTVTDY 128 (165)
T ss_pred EEEEEEEEe--eEE-E-EEecCcHhHHHHHHHHHHHhCCCcee-----------eeeeeeeccCCcchhh
Confidence 445566654 765 4 7887765 888887766544443322 4679999999999887
No 124
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=46.71 E-value=65 Score=19.53 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=34.2
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++|+. +++++..||.+|-+.+. .. ...+.+-..|+++.-+ .-++.-+.+||
T Consensus 5 vNg~~---~~~~~~~tl~~ll~~l~---------~~--~~~vaVavN~~iv~r~-~w~~~~L~~gD 55 (66)
T PRK08053 5 FNDQP---MQCAAGQTVHELLEQLN---------QL--QPGAALAINQQIIPRE-QWAQHIVQDGD 55 (66)
T ss_pred ECCeE---EEcCCCCCHHHHHHHcC---------CC--CCcEEEEECCEEeChH-HcCccccCCCC
Confidence 47754 78888999999988763 11 2467888899988522 12233567777
No 125
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=46.21 E-value=1.2e+02 Score=22.87 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=28.2
Q ss_pred eEEeCCCccHHHHHHHHHhhCCCcccCCCC-CCcceeE--EEcCee---cCCCcccccc
Q 033534 21 PSKFSPTTTVASLKEKIISRWPKEKENGPK-TVNNVQL--IHAGKI---LEDNMTIAES 73 (117)
Q Consensus 21 ~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~-~~~~qrL--I~~Gk~---L~D~~tL~~~ 73 (117)
.+.++.+.||.||-+.+...- +.+. +...+|| ++.||+ +..+.+|.+.
T Consensus 37 ~~~vpk~~tV~Dll~~l~~k~-----~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 37 ELLVPKTGTVSDLLEELQKKV-----GFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EE--BTT-BHHHHHHHHHTT---------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEECCCCCHHHHHHHHHHHc-----CCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 377799999999999998552 2221 2357777 778886 5667777666
No 126
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=45.51 E-value=43 Score=28.06 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=47.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCC--CccccccCCCCCC
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED--NMTIAESRLPVVE 79 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D--~~tL~~~~i~~g~ 79 (117)
++|..-...-+. .++.+..+....+++..++.. .+++. +..-|||+++.|.+ .++|..+|+..++
T Consensus 3 ~tvs~~l~~~~~-~~i~v~~dg~L~nl~aL~~~d-----~g~~~--~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 3 LTVSVALNFEKK-FPIPVTTDGELNNLAALCWKD-----TGIVY--DPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred EEEEEEecceee-eccccccccchhhHHHHHHHH-----hCccc--chhhcccCCCccccchhhhhhhcccccce
Confidence 344443333333 458888888999999999743 35664 78889999999965 5779999999887
No 127
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=43.92 E-value=75 Score=19.45 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=35.5
Q ss_pred EEEEEEecCCC--e-eeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCC
Q 033534 7 IELKFRLADGA--D-IGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66 (117)
Q Consensus 7 ~~i~~k~~~G~--~-~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D 66 (117)
+.|+|.+..|. . -.++.|+.+.|..+|-+.|-+--+.+.+. -...++..|..|.+
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~-----vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEP-----VPFDFLINGEELRT 59 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCC-----CcEEEEECCEEeec
Confidence 67888888883 1 12699999999999977765432122222 34556667766644
No 128
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=42.19 E-value=97 Score=20.25 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=25.7
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC
Q 033534 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G 61 (117)
+.+.+..+..+|.+.|+++. ..+ ++..+|-|.-
T Consensus 11 i~v~~g~~y~~L~~~ls~kL-----~l~--~~~~~LSY~~ 43 (78)
T cd06411 11 LRAPRGADVSSLRALLSQAL-----PQQ--AQRGQLSYRA 43 (78)
T ss_pred EEccCCCCHHHHHHHHHHHh-----cCC--hhhcEEEecC
Confidence 78899999999999998654 233 5778887753
No 129
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=41.93 E-value=77 Score=19.01 Aligned_cols=50 Identities=18% Similarity=0.102 Sum_probs=32.3
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++|+. ++++ ..|+.+|.+.+. ++ +..+.+-..|+++.- ..-.+..+.+||
T Consensus 5 ~Ng~~---~~~~-~~tl~~Ll~~l~---------~~--~~~vavavN~~iv~~-~~~~~~~L~dgD 54 (65)
T PRK06488 5 VNGET---LQTE-ATTLALLLAELD---------YE--GNWLATAVNGELVHK-EARAQFVLHEGD 54 (65)
T ss_pred ECCeE---EEcC-cCcHHHHHHHcC---------CC--CCeEEEEECCEEcCH-HHcCccccCCCC
Confidence 47765 5564 468999988762 22 356778888888862 223345677787
No 130
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=41.16 E-value=89 Score=19.50 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=36.5
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCcccc
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIA 71 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~ 71 (117)
+++-+.+|+... +.+-|+.||.++=+++.+. -++..+.-.+++.-..+.|+.++...
T Consensus 3 ~~v~LP~~q~t~-V~vrpg~ti~d~L~~~~~k-----r~L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 3 CRVHLPNGQRTV-VQVRPGMTIRDALSKACKK-----RGLNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEETTTEEEE-EEE-TTSBHHHHHHHHHHT-----TT--CCCEEEEEEEEEEEE-TTSBGG
T ss_pred EEEECCCCCEEE-EEEcCCCCHHHHHHHHHHH-----cCCCHHHEEEEEcCCCccccCCCcee
Confidence 567788998866 9999999999998888844 34433233444444666776655443
No 131
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.35 E-value=43 Score=27.06 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=30.5
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
+.-.|.||+.+|+++. .+|++..+..+|+..|.-+
T Consensus 209 s~crlQiRl~DG~Tl~-~tF~a~E~L~~VR~wVd~n 243 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLT-QTFNARETLAAVRLWVDLN 243 (290)
T ss_pred cceEEEEEcCCCCeee-eecCchhhHHHHHHHHHHh
Confidence 3457889999999987 9999999999999999754
No 132
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=39.28 E-value=67 Score=19.25 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=23.4
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
|++.+.+|+. .+++...|+.++=..|..+
T Consensus 1 I~v~lpdG~~---~~~~~g~T~~d~A~~I~~~ 29 (60)
T PF02824_consen 1 IRVYLPDGSI---KELPEGSTVLDVAYSIHSS 29 (60)
T ss_dssp EEEEETTSCE---EEEETTBBHHHHHHHHSHH
T ss_pred CEEECCCCCe---eeCCCCCCHHHHHHHHCHH
Confidence 4566788975 6799999999999999643
No 133
>KOG4261 consensus Talin [Cytoskeleton]
Probab=39.25 E-value=46 Score=30.76 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=43.5
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEE------cCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH------AGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~------~Gk~L~D~~tL~~~~i~~g~ 79 (117)
..++.++++.|+|+++|.|--..|++++|....+ + ++..|.. .|-+|+.+.+|..|=+-.++
T Consensus 9 ~~~~v~ktmqfepst~vyda~~~ire~~~~~~~~-a---~~yglf~~de~~~k~~wle~grt~~~y~~~n~d 76 (1003)
T KOG4261|consen 9 SSANVVKTMQFEPSTLVYDACKVIREKFAEADVG-A---SEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGD 76 (1003)
T ss_pred EecceeeeeeecCchHHHHHHHHHHHHhhhcccC-c---hhcceeeecCCcccceeecCCccHHHHHHhccc
Confidence 3345556799999999999999998887654433 2 4444432 45677888888887666666
No 134
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=39.15 E-value=61 Score=21.27 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=21.7
Q ss_pred EEec-CCCeeeeEEeCC--CccHHHHHHHHHhhC
Q 033534 11 FRLA-DGADIGPSKFSP--TTTVASLKEKIISRW 41 (117)
Q Consensus 11 ~k~~-~G~~~~~~~v~~--~~tV~~lK~~I~~~w 41 (117)
+|.. .|.++. |.+++ +.+-.+|++.|+...
T Consensus 3 vKaty~~d~~r-f~~~~~~~~~~~~L~~ev~~rf 35 (81)
T cd06396 3 LKVTYNGESQS-FLVSDSENTTWASVEAMVKVSF 35 (81)
T ss_pred EEEEECCeEEE-EEecCCCCCCHHHHHHHHHHHh
Confidence 3334 344444 89999 779999999998653
No 135
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=38.18 E-value=81 Score=21.06 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=44.2
Q ss_pred EEEEE-ecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeE--EEcCe--ecCCCccccccCCCCCCC-C
Q 033534 8 ELKFR-LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGK--ILEDNMTIAESRLPVVEL-P 81 (117)
Q Consensus 8 ~i~~k-~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrL--I~~Gk--~L~D~~tL~~~~i~~g~~-p 81 (117)
+|.+- ..+|-+.+++-|.|++|+++|-..+++++ ..+ .|+.-.| +-.|. .|.|+.-.. +|+..=. .
T Consensus 3 ~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf--~V~----qPe~y~LFl~vdg~~~qLadd~~Pq--~ika~L~~~ 74 (87)
T cd01776 3 RVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKF--KVT----QPEEYSLFLFVEETWQQLAPDTYPQ--RIKAELHSR 74 (87)
T ss_pred eEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHh--ccC----ChhheeEEEEECCcEEEcCcccccc--eechhhccC
Confidence 34443 23666667899999999999999999775 221 2455555 23343 466654322 2221000 0
Q ss_pred CcceEEEEEecc
Q 033534 82 GTAITMHVVLRP 93 (117)
Q Consensus 82 ~~~~t~Hlv~~~ 93 (117)
-+..+.|+|-|+
T Consensus 75 ~~~~~fhfvYrr 86 (87)
T cd01776 75 PQPNTFHFVYRR 86 (87)
T ss_pred CCCcceEEEEec
Confidence 123477877654
No 136
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=36.85 E-value=17 Score=23.82 Aligned_cols=8 Identities=25% Similarity=1.202 Sum_probs=7.3
Q ss_pred CceEEeeC
Q 033534 110 SRCLCSIL 117 (117)
Q Consensus 110 ~~c~c~i~ 117 (117)
++|+|.+|
T Consensus 105 ~nCRC~~i 112 (112)
T PF04233_consen 105 PNCRCTVI 112 (112)
T ss_pred CCCeeeeC
Confidence 99999986
No 137
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=36.17 E-value=1e+02 Score=24.25 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=42.0
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCC
Q 033534 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D 66 (117)
++|.|.|.|+..+|.-+. +-++...-|+-+|..|..+ .|-.. ...|-|-|.-|+-++
T Consensus 24 ~~d~itlef~~~DGtlit-~~~Df~~~v~i~kalilge----~e~gq--s~yq~~cf~~~~~~~ 80 (240)
T PF14941_consen 24 EEDTITLEFQRSDGTLIT-QLADFKQEVQIFKALILGE----EERGQ--SQYQALCFVTKLQKN 80 (240)
T ss_pred CCceEEEEEEcCCCcEEe-eehhhhhHHHHHHHHHcCh----hhhcc--CcceeEEEEEeeccC
Confidence 468999999999998765 8889999999999999744 22111 256777776665443
No 138
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=35.51 E-value=1.6e+02 Score=24.16 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=36.3
Q ss_pred cCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++|+. ++++++.||.+|=+.+ +++ +..+-+.+.|+++.-+ --.+.-+++||
T Consensus 5 VNGk~---~el~e~~TL~dLL~~L---------~i~--~~~VAVeVNgeIVpr~-~w~~t~LkeGD 55 (326)
T PRK11840 5 LNGEP---RQVPAGLTIAALLAEL---------GLA--PKKVAVERNLEIVPRS-EYGQVALEEGD 55 (326)
T ss_pred ECCEE---EecCCCCcHHHHHHHc---------CCC--CCeEEEEECCEECCHH-HcCccccCCCC
Confidence 47764 7888899999887766 233 4788899999998522 23445678887
No 139
>PRK07440 hypothetical protein; Provisional
Probab=35.35 E-value=1.1e+02 Score=18.95 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=33.9
Q ss_pred CCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 15 ~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
+|+. +++++..||.+|=+.+. ++ +..+-+-+.|.++.-++ -.+.-+.+||
T Consensus 10 NG~~---~~~~~~~tl~~lL~~l~---------~~--~~~vav~~N~~iv~r~~-w~~~~L~~gD 59 (70)
T PRK07440 10 NGET---RTCSSGTSLPDLLQQLG---------FN--PRLVAVEYNGEILHRQF-WEQTQVQPGD 59 (70)
T ss_pred CCEE---EEcCCCCCHHHHHHHcC---------CC--CCeEEEEECCEEeCHHH-cCceecCCCC
Confidence 6754 78889999998876652 32 47788888998886221 2334567777
No 140
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=33.98 E-value=1.1e+02 Score=19.95 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHH
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKE 35 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~ 35 (117)
..+|+|+...|+... ++++++.|+.+.=.
T Consensus 2 ~~~v~~~~~~~~~~~-~~~~~g~tLLda~~ 30 (97)
T TIGR02008 2 TYKVTLVNPDGGEET-IECPDDQYILDAAE 30 (97)
T ss_pred eEEEEEEECCCCEEE-EEECCCCcHHHHHH
Confidence 456788778887755 99999999987633
No 141
>PF14191 YodL: YodL-like
Probab=33.79 E-value=85 Score=21.40 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=22.5
Q ss_pred EeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcC
Q 033534 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (117)
Q Consensus 23 ~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G 61 (117)
++..+.+.++|-.+.-..-|.+..+.+.|++.+-.|+.|
T Consensus 45 ~l~~~~~Le~iy~~FN~~~P~df~GhsLSvSDVV~l~~~ 83 (103)
T PF14191_consen 45 ELDHTETLEDIYERFNVDHPEDFKGHSLSVSDVVELYDG 83 (103)
T ss_pred ecCCCCCHHHHHHHhCcCCCCCCCCCccChheEEEEEcC
Confidence 344566666666666555566665555555665555544
No 142
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.69 E-value=30 Score=30.04 Aligned_cols=67 Identities=24% Similarity=0.175 Sum_probs=46.4
Q ss_pred CceEEEEEEecCCCeeeeEEeC--CCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCC
Q 033534 4 EDLIELKFRLADGADIGPSKFS--PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVV 78 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~--~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (117)
.+++.|+.-...+.... ..++ =.-+-.++...|++. -+++. +.+|.|-+||+|.-.+||.+-|++.+
T Consensus 35 lat~~Vrlv~~~k~~~m-~l~k~sL~i~Gselqa~iakk-----lgi~e--nhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 35 LATESVRLVFAGKGDRM-NLKKCSLHITGSELQALIAKK-----LGIKE--NHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred ccceeeEeccccccchh-hhhhcccccccHHHHHHHHHH-----cCCch--hhhheeeccceeecccchhhhhhhhh
Confidence 35566655444333222 3333 344556899999865 36774 69999999999999999999998764
No 143
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=32.80 E-value=1.6e+02 Score=19.98 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=26.1
Q ss_pred EEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhC
Q 033534 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRW 41 (117)
Q Consensus 8 ~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~w 41 (117)
...|-+..+.... +.|++++|+.+|-+.+.+++
T Consensus 8 ~~sf~lp~~s~k~-v~IsS~tTt~eVI~~LL~KF 40 (96)
T cd01778 8 STSLPLPKDTAKH-LHISSKTTVREVIEALLKKF 40 (96)
T ss_pred EEEEeccCCceeE-EEEecCCcHHHHHHHHHHhh
Confidence 3456666776655 99999999999999998775
No 144
>PF00894 Luteo_coat: Luteovirus coat protein; InterPro: IPR001517 Barley yellow dwarf virus (BYDV) can be separated into two groups based on serological relationships, presumably governed by the viral capsid structure []. Coding regions of coat proteins have been identified for the MAV-PS1, P-PAV (group 1) and NY-RPV (group 2) isolates of BYDV. Group 1 proteins show 71% sequence similarity to each other, 51% similarity to those of group 2, and a high degree of similarity to those from other luteoviruses (including coat proteins from Beet western yellows virus (BWYV) [] and Potato leafroll virus (PLrV) [, ]). Among luteovirus coat protein sequences in general, several highly conserved domains can be identified, while other domains differentiate group 1 isolates from group 2 and other luteoviruses. Sequence comparisons between the genomes of PLrV, BWYV and BYDV have revealed ~65% protein sequence similarity between the capsid proteins of BWYV and PLrV and ~45% similarity between BYDV and PLrV []. The N-terminal regions of these sequences, like those of many plant virus capsid proteins, is highly basic. These regions may be involved in protein-RNA interaction.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=32.74 E-value=1.4e+02 Score=21.65 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=36.2
Q ss_pred eEEEEEEec-----CCCeeeeEEeCCCccHHHHHHHHHh---------hCCCccc----CCCCCCcceeEEEcCe
Q 033534 6 LIELKFRLA-----DGADIGPSKFSPTTTVASLKEKIIS---------RWPKEKE----NGPKTVNNVQLIHAGK 62 (117)
Q Consensus 6 ~~~i~~k~~-----~G~~~~~~~v~~~~tV~~lK~~I~~---------~wp~~~~----~~p~~~~~qrLI~~Gk 62 (117)
.+.|.|+.- .| .+. +|+|+..+...|...|-. .||+..= -.+.+.+|.||+|.|.
T Consensus 45 ~v~v~f~SeAsstt~G-sIa-yElD~~ck~s~l~S~in~f~I~k~g~ksf~a~~InG~~w~~ss~dQF~iLYKgN 117 (138)
T PF00894_consen 45 NVKVEFISEASSTTSG-SIA-YELDPHCKQSTLGSYINKFSITKNGSKSFPAKQINGKEWHDSSEDQFRILYKGN 117 (138)
T ss_pred EEEEEEEeecccCCCc-cEE-EEecCccchhhhhheeeeEeeecccccccchhccCCccccccCcceEEEEEecC
Confidence 456666653 33 335 899999999988877632 3444321 1245679999999994
No 145
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=32.72 E-value=43 Score=18.67 Aligned_cols=13 Identities=8% Similarity=0.360 Sum_probs=11.5
Q ss_pred CcceeEEEcCeec
Q 033534 52 VNNVQLIHAGKIL 64 (117)
Q Consensus 52 ~~~qrLI~~Gk~L 64 (117)
.+++.+.|+|++.
T Consensus 5 ~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 5 TAQLTIFYGGQVC 17 (36)
T ss_pred CCcEEEEECCEEE
Confidence 5899999999975
No 146
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=31.36 E-value=77 Score=23.46 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=25.9
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHHHH
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASLKE 35 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~ 35 (117)
..|+|+|...+|..+. +.....+||.++-.
T Consensus 42 e~i~Itfv~~dG~~~~-i~g~vGdtlLd~ah 71 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEIK-IKGKVGDTLLDAAH 71 (159)
T ss_pred ceEEEEEECCCCCEEE-eeeecchHHHHHHH
Confidence 4599999999999977 99999999988743
No 147
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=30.78 E-value=1.3e+02 Score=26.10 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=46.9
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeec--CC-CccccccCCCCC
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL--ED-NMTIAESRLPVV 78 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L--~D-~~tL~~~~i~~g 78 (117)
.++.+|.||+.+|.++. =.|+.++-...|++.+...- .+-...=.+---|=-|.. +| .++|.++++...
T Consensus 312 ~d~~rLqiRLPdGssft-e~Fps~~vL~~vr~yvrq~~-----~i~~g~f~LatpyPRReft~eDy~KtllEl~L~ps 383 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFT-EKFPSTSVLRMVRDYVRQNQ-----TIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPS 383 (506)
T ss_pred cceeEEEEecCCccchh-hcCCcchHHHHHHHHHHhcc-----cccccceeeccccccccccchhhhhhHHHhccCCc
Confidence 37899999999999865 78888888889999997431 111111122223445554 23 788999998864
No 148
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=30.32 E-value=1.2e+02 Score=20.06 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=24.3
Q ss_pred EEEEec-CCCeeeeEEeCCCccHHHHHHHHHhhC
Q 033534 9 LKFRLA-DGADIGPSKFSPTTTVASLKEKIISRW 41 (117)
Q Consensus 9 i~~k~~-~G~~~~~~~v~~~~tV~~lK~~I~~~w 41 (117)
|+||.. .|..+. +.++++.+-.+|.++|.+..
T Consensus 3 ikVKv~~~~Dv~~-i~v~~~i~f~dL~~kIrdkf 35 (86)
T cd06408 3 IRVKVHAQDDTRY-IMIGPDTGFADFEDKIRDKF 35 (86)
T ss_pred EEEEEEecCcEEE-EEcCCCCCHHHHHHHHHHHh
Confidence 445555 455544 99999999999999998664
No 149
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.60 E-value=1.3e+02 Score=20.03 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=29.5
Q ss_pred eEEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033534 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 6 ~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
++.|++-+.+|..+. +++..+++..+|=+.+.++
T Consensus 1 ~V~L~V~Lpdg~~i~-V~v~~s~~a~~Vleav~~k 34 (87)
T cd01777 1 DVELRIALPDKATVT-VRVRKNATTDQVYQALVAK 34 (87)
T ss_pred CeEEEEEccCCCEEE-EEEEEcccHHHHHHHHHHH
Confidence 467888889999987 9999999999999988854
No 150
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=27.29 E-value=1.1e+02 Score=21.02 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=21.8
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHH
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKE 35 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~ 35 (117)
|+|+|...+|+... +++++..|+.+.=+
T Consensus 1 ~~V~fi~~~G~~~~-v~~~~G~tLl~a~~ 28 (117)
T PLN02593 1 ISVTFVDKDGEERT-VKAPVGMSLLEAAH 28 (117)
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHH
Confidence 57888888998755 99999988877633
No 151
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=27.06 E-value=1.1e+02 Score=24.56 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=38.1
Q ss_pred EEeCCCccHHHHHHHHHhhC---CCccc-----CCCCCCcceeEEEcCeecCCCccccccC
Q 033534 22 SKFSPTTTVASLKEKIISRW---PKEKE-----NGPKTVNNVQLIHAGKILEDNMTIAESR 74 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~w---p~~~~-----~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (117)
+....-..|.-|++.|+++. |.... ..+...+.+-|+|.|.+|+.+.||+..+
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 55556677888888888776 22221 1111258999999999999999999876
No 152
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=25.74 E-value=1.4e+02 Score=21.44 Aligned_cols=28 Identities=7% Similarity=0.134 Sum_probs=23.8
Q ss_pred ceEEEEEEecCCCeeeeEEeCCCccHHHH
Q 033534 5 DLIELKFRLADGADIGPSKFSPTTTVASL 33 (117)
Q Consensus 5 ~~~~i~~k~~~G~~~~~~~v~~~~tV~~l 33 (117)
..++|+|...+|+... +++++..|+-+.
T Consensus 34 g~v~I~~~~~dG~~~~-v~~~~G~sLLea 61 (143)
T PTZ00490 34 GKVKVCVKKRDGTHCD-VEVPVGMSLMHA 61 (143)
T ss_pred CcEEEEEEcCCCCEEE-EEECCCccHHHH
Confidence 5788999988998865 999999988875
No 153
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=25.60 E-value=99 Score=21.82 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=28.5
Q ss_pred E-EeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccc
Q 033534 22 S-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72 (117)
Q Consensus 22 ~-~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~ 72 (117)
+ -|+.+.||+++...|..+ +..+++++=|...+-.+.-+.++++
T Consensus 44 fllVP~d~tV~qF~~iIRkr-------l~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 44 FLALPRDATVAELEAAVRQA-------LGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred EEEcCCCCcHHHHHHHHHHH-------cCCChhHEEEEECCccCCccchHHH
Confidence 5 699999999999999865 3334566544444434455555544
No 154
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=24.65 E-value=1.7e+02 Score=17.80 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=33.6
Q ss_pred cCCCeeeeEEeCCC-ccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 14 ADGADIGPSKFSPT-TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 14 ~~G~~~~~~~v~~~-~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
++|+. ++++.. .||.+|=+.+ +++ +..+-+-+.|+++.-++ -++..+++||
T Consensus 5 vNG~~---~~~~~~~~tv~~lL~~l---------~~~--~~~vav~vN~~iv~r~~-w~~~~L~~gD 56 (67)
T PRK07696 5 INGNQ---IEVPESVKTVAELLTHL---------ELD--NKIVVVERNKDILQKDD-HTDTSVFDGD 56 (67)
T ss_pred ECCEE---EEcCCCcccHHHHHHHc---------CCC--CCeEEEEECCEEeCHHH-cCceecCCCC
Confidence 47764 677776 6888886665 232 46777888999885432 3345577787
No 155
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=24.65 E-value=2.1e+02 Score=22.03 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=28.6
Q ss_pred CCCCceEEEEEEecCCC-----eeee--EEeCCCccHHHHHHHHHhhC
Q 033534 1 MAGEDLIELKFRLADGA-----DIGP--SKFSPTTTVASLKEKIISRW 41 (117)
Q Consensus 1 ~~~~~~~~i~~k~~~G~-----~~~~--~~v~~~~tV~~lK~~I~~~w 41 (117)
||+-..|+|+|+--++. .+.+ +++++.+||.++=..|.+++
T Consensus 1 ~~~~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~ 48 (244)
T PRK12385 1 MAEMKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNL 48 (244)
T ss_pred CCCCcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhc
Confidence 78878889997654431 1122 55669999999988887654
No 156
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=24.55 E-value=1.3e+02 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=23.9
Q ss_pred EEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033534 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 9 i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
|++|...+..+.-..++++.|-+.|.+++++-
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~ 32 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDM 32 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHH
Confidence 34555545454558999999999999999854
No 157
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=24.17 E-value=1.6e+02 Score=21.67 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=28.9
Q ss_pred CCceEEEEEEecCCCeeeeEEeCCCccHHHHHHHH
Q 033534 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKI 37 (117)
Q Consensus 3 ~~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I 37 (117)
++.++.+++..++|++.. .++..+.|.+++-+.+
T Consensus 47 ~~~tmk~rl~~v~g~~~t-atLnD~atAkdfa~lL 80 (166)
T COG4925 47 EGETMKRRLIQVNGETTT-ATLNDGATAKDFAELL 80 (166)
T ss_pred cCCceEEEEEeeCCEEEE-EEecCChhHHHHHHhC
Confidence 457888999899999865 9999999999997776
No 158
>COG1978 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.51 E-value=1.6e+02 Score=21.51 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=26.6
Q ss_pred EEEEEEecCCCeeeeEEeCCCccHHHHHHHHHhh
Q 033534 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 7 ~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
+.+-.|+.+|..+. +++.....|.+|+++|+.+
T Consensus 50 ~a~~~r~gsGa~~f-~~v~~v~ki~slrqrI~~E 82 (152)
T COG1978 50 IAVHHRSGSGAKVF-YNVEKVPKINSLRQRIMEE 82 (152)
T ss_pred EEEEEEcCCCcEEE-EEeEEcCchhhHHHHHHHH
Confidence 34456778898887 8888888899999999855
No 159
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=23.50 E-value=1.1e+02 Score=21.51 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=28.0
Q ss_pred CCccHHHHHHHHHhhCCCccc-CC--------CC------CCcceeEEEcCee-cCCCccccccCCCCCC
Q 033534 26 PTTTVASLKEKIISRWPKEKE-NG--------PK------TVNNVQLIHAGKI-LEDNMTIAESRLPVVE 79 (117)
Q Consensus 26 ~~~tV~~lK~~I~~~wp~~~~-~~--------p~------~~~~qrLI~~Gk~-L~D~~tL~~~~i~~g~ 79 (117)
.+.|..+|-..|.+.-|.... +. |. -..++-.++.|+- -+|++||+++++.-|+
T Consensus 45 ~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 45 MDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred ccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCC
Confidence 678888888888753221111 10 10 0112334555654 4789999999999998
No 160
>PF12039 DUF3525: Protein of unknown function (DUF3525); InterPro: IPR021912 This family of proteins is functionally uncharacterised. This protein is found in viruses. Proteins in this family are about 360 amino acids in length.
Probab=23.29 E-value=93 Score=25.67 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred ceeEEEcCeecCCCcc-cccc--------CCCCCCCCCcceEEEEEe
Q 033534 54 NVQLIHAGKILEDNMT-IAES--------RLPVVELPGTAITMHVVL 91 (117)
Q Consensus 54 ~qrLI~~Gk~L~D~~t-L~~~--------~i~~g~~p~~~~t~Hlv~ 91 (117)
.--+||.||+.+.+.| +.+. .+..|. ++|||.
T Consensus 26 nsmivyeg~fv~~~~tsvg~~fkltks~rp~~~g~------~~hlvp 66 (453)
T PF12039_consen 26 NSMIVYEGRFVNQDATSVGDPFKLTKSRRPLKAGH------TVHLVP 66 (453)
T ss_pred CceEEEeeeecCCCccccCChhhcccccccCCCCc------eEEech
Confidence 4568999999975444 4332 245555 899874
No 161
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=22.98 E-value=2e+02 Score=17.95 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=35.5
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCCCCCcceEEEEE
Q 033534 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 90 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~p~~~~t~Hlv 90 (117)
+++++..|+++|=+.+ +++ +...-+.+.|.++..++ -++.-+.+|| .+.++|++
T Consensus 12 ~e~~~~~tv~dLL~~l---------~~~--~~~vav~vNg~iVpr~~-~~~~~l~~gD---~ievv~~v 65 (68)
T COG2104 12 VEIAEGTTVADLLAQL---------GLN--PEGVAVAVNGEIVPRSQ-WADTILKEGD---RIEVVRVV 65 (68)
T ss_pred EEcCCCCcHHHHHHHh---------CCC--CceEEEEECCEEccchh-hhhccccCCC---EEEEEEee
Confidence 8888889999987776 343 47888889999887432 2334455555 34445443
No 162
>PRK01712 carbon storage regulator; Provisional
Probab=22.76 E-value=1.1e+02 Score=19.21 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=21.8
Q ss_pred CceEEEEEEecCCCeeeeEEeCCCccHHHHHHHHH
Q 033534 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKII 38 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v~~~~tV~~lK~~I~ 38 (117)
+++|.|++.-..|..+. +-++.--.|.=+++.|+
T Consensus 15 gd~I~I~V~~i~~~~Vr-lGI~AP~~v~I~R~Ei~ 48 (64)
T PRK01712 15 GDDIEVTVLGVKGNQVR-IGINAPKEVSVHREEIY 48 (64)
T ss_pred CCCEEEEEEEEeCCEEE-EEEECCCCceEeHHHHH
Confidence 36899999998888776 65544444433344444
No 163
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=22.71 E-value=2.1e+02 Score=17.95 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=19.8
Q ss_pred CeeeeEEeCCCccHHHHHHHHHhh
Q 033534 17 ADIGPSKFSPTTTVASLKEKIISR 40 (117)
Q Consensus 17 ~~~~~~~v~~~~tV~~lK~~I~~~ 40 (117)
.++.++.+.+++|+.+|=+.+.++
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k 38 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEK 38 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHH
Confidence 344569999999999999888865
No 164
>PRK01777 hypothetical protein; Validated
Probab=22.70 E-value=2.4e+02 Score=18.73 Aligned_cols=65 Identities=8% Similarity=-0.097 Sum_probs=35.9
Q ss_pred eEEEEEEecCCCee--eeEEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 6 LIELKFRLADGADI--GPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 6 ~~~i~~k~~~G~~~--~~~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
.|.|.+-......+ ..+++++++||.++=+.+ .++.+..++ +.+.-.+.-.||...-+ .-+.+||
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s--gi~~~~pei--~~~~~~vgI~Gk~v~~d-----~~L~dGD 69 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS--GLLELRTDI--DLAKNKVGIYSRPAKLT-----DVLRDGD 69 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc--CCCccCccc--ccccceEEEeCeECCCC-----CcCCCCC
Confidence 45555555433332 358889999999886665 232222122 11234565567766443 3567787
No 165
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=22.17 E-value=94 Score=25.03 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=22.8
Q ss_pred EeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCe
Q 033534 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (117)
Q Consensus 23 ~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk 62 (117)
.+++++|.++||..||+. ..++.|-|.=|
T Consensus 301 vL~~~mtLaTVr~~~WK~-----------~~di~L~YR~k 329 (331)
T PF11816_consen 301 VLPPDMTLATVRTFIWKS-----------SGDIVLHYRRK 329 (331)
T ss_pred EcCCcCCHHHHHHhhccC-----------CCeEEEEEEec
Confidence 357999999999999742 37888888644
No 166
>PRK00568 carbon storage regulator; Provisional
Probab=21.78 E-value=1.1e+02 Score=19.93 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=23.3
Q ss_pred CceEEEEEEecCCCeeeeEEe--CCCccHH--HHHHHHH
Q 033534 4 EDLIELKFRLADGADIGPSKF--SPTTTVA--SLKEKII 38 (117)
Q Consensus 4 ~~~~~i~~k~~~G~~~~~~~v--~~~~tV~--~lK~~I~ 38 (117)
+++|.|++.-..|..+. +-+ +.+.+|- +|.+.|.
T Consensus 15 gd~I~I~Vl~i~g~~Vr-lGI~AP~~v~I~R~Ei~~~i~ 52 (76)
T PRK00568 15 DDNIHIKVISIDRGSVR-LGFEAPESTLILRAELKEAIV 52 (76)
T ss_pred CCCeEEEEEEEcCCEEE-EEEECCCCCeEeHHHHHHHHH
Confidence 47899999999888777 555 4554442 5555554
No 167
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=21.16 E-value=2.7e+02 Score=18.66 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=31.1
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccccCCCCCC
Q 033534 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (117)
..++=...+..||..+..+. ++.. +.=-+......|++.++|-|-+++-.-
T Consensus 7 q~mDI~epl~~Lk~lLe~Rl-----~~~L--~~~~f~LQD~~L~~~k~L~dQcVqgeG 57 (88)
T PF11620_consen 7 QHMDIREPLSTLKKLLERRL-----GISL--SDYEFWLQDIQLEPHKSLVDQCVQGEG 57 (88)
T ss_dssp EEEESSSBGGGHHHHSHHHH------S----SS-EEEETTEE--TTSBTTTSS----S
T ss_pred EEEecCCcHHHHHHHHHHhh-----CCCc--CCCeEEeccceecCCccHHHhhccccC
Confidence 56677778899999887552 3332 455566677779999999999988554
No 168
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=20.91 E-value=2.6e+02 Score=18.35 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=33.7
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCC----CcceeEEEcCeecCCCccc--cccCCCCCCCCCcceEEEEEecc
Q 033534 22 SKFSPTTTVASLKEKIISRWPKEKENGPKT----VNNVQLIHAGKILEDNMTI--AESRLPVVELPGTAITMHVVLRP 93 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~----~~~qrLI~~Gk~L~D~~tL--~~~~i~~g~~p~~~~t~Hlv~~~ 93 (117)
++.+...||.+|=+.|.++.|...+..=.. ...+.++.+|+-. ..| .++.+++|| .|++....
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di---~~l~g~~t~L~dgD------~v~i~P~v 91 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDW---ELLGEEDYILEDGD------HVVFISTL 91 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccc---cccCCcccCCCCcC------EEEEECCC
Confidence 344467899999999987765433311000 0123333333321 112 246788898 77765433
No 169
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=20.43 E-value=2.4e+02 Score=19.11 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=29.2
Q ss_pred EEeCCCccHHHHHHHHHhhCCCcccCCCCCCcceeEEEcCeecCCCccccc
Q 033534 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72 (117)
Q Consensus 22 ~~v~~~~tV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~ 72 (117)
|-|+.+.||.++...|..+- .+++ -..+=|..++..+..+.++++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl-----~l~~-~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRL-----QLSP-EQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHT-----T--T-TS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhh-----cCCC-CceEEEEEcCcccchhhHHHH
Confidence 77899999999999998652 2221 234555666655566777654
No 170
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=20.11 E-value=81 Score=20.25 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=16.5
Q ss_pred EeCCCccHHHHHHHHHhhC
Q 033534 23 KFSPTTTVASLKEKIISRW 41 (117)
Q Consensus 23 ~v~~~~tV~~lK~~I~~~w 41 (117)
-.+|+.|+.+|++.|.++|
T Consensus 8 lt~~~~tl~~L~~eI~~~f 26 (73)
T PF10407_consen 8 LTDPNNTLSQLKEEIEERF 26 (73)
T ss_pred EeCCCCcHHHHHHHHHHHH
Confidence 3579999999999999876
Done!