BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033535
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 227 bits (579), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 107/110 (97%), Positives = 110/110 (100%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
MSTPARKRLMRDFKRLQQDPPAGISGAPQDN+IMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 195 bits (496), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 103/110 (93%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQ
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQ 110
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 192 bits (489), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 104/110 (94%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M+TP+R+RLMRDFK+LQ+DPPAG+SGAP +++I+ W A+IFGP +TP++ GTFKL+L+FT
Sbjct: 4 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
E+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQ
Sbjct: 64 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQ 113
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 192 bits (489), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 104/110 (94%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M+TP+R+RLMRDFK+LQ+DPPAG+SGAP +++I+ W A+IFGP +TP++ GTFKL+L+FT
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
E+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQ
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQ 110
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 172 bits (436), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 96/110 (87%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
MSTPAR+RLMRDFKR+++D P G+S +P +++M+WNA+I GP DTP++ GTF+L L+F
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
E+YPNKPP V+F+S MFHPN+YA+G ICLDILQN+W+P YDVA+ILTSIQ
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQ 110
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 74/109 (67%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M + A KR+ ++ + LQ+DPPA S P + + W A I GP D+P+ GG F LT+ F
Sbjct: 3 MGSMALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFP 62
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
DYP KPP V F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 63 TDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 111
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 74/109 (67%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M++ A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F
Sbjct: 8 MNSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 68 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 116
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M + A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F
Sbjct: 3 MGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 62
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 63 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 111
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 74/109 (67%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M++ A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F
Sbjct: 8 MNSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 68 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 116
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 80 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 124
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 106
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 114 bits (286), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 105
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 10 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 70 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 114
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QW P ++ +L SI
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSI 108
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 71/105 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ + L +DPPA S P + + W A I GP ++P+ GG F LT+ F DYP
Sbjct: 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 65 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 109
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLD L++QWSP ++ +L SI
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSI 108
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 70/106 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ R+ L +DPP+ S P + + W A I GP D+P+ GG F L++ F DYP
Sbjct: 2 ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 62 FKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSIS 107
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ LQ+DPPA S P + + W A I GP D+ + GG F LT+ F DYP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 68 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 112
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ LQ+DPPA S P + + W A I GP D+ + GG F LT+ F DYP
Sbjct: 20 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 80 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 124
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ LQ+DPPA S P + + W A I GP D+ + GG F LT+ F DYP
Sbjct: 4 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 64 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 108
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 108
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSI 105
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 5 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 65 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 109
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 80 FKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSI 124
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 68/105 (64%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPP S P + + W A I GP+D+P+ GG F L + F DYP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F ++++HPNI + G+ICLDIL++QWSP ++ +L SI
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSI 126
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 106
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 70/105 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
+ KR+ ++ L++DPP S P + + W A I GP D+P+ GG F L++ F DYP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP + F ++++HPNI A+G+ICLDIL++QWSP ++ +L SI
Sbjct: 63 FKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSI 107
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 69/105 (65%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A +R+ ++ + +QQDPP S P + I W A I GPDD+P+ GG F L + F DYP
Sbjct: 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
K P V F+++++HPNI +G ICLDIL++QWSP ++ +L SI
Sbjct: 65 FKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSI 109
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 68/105 (64%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 2 ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F +R++HP I ++GSI LDIL++QWSP ++ +L SI
Sbjct: 62 FKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSI 106
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 68/105 (64%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ LQ+DPPA P + + W A I GP D+ + GG F LT+ F DYP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP + F ++++HPNI ++GSI LDIL++QWSP V+ +L SI
Sbjct: 68 FKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSI 112
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R+ ++ + L +PP GI P + +N +I GPD TP++GGT+KL L E YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDS 114
PP VRF+++++HPNI G ICLDIL+++WSP + +L SIQ S
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 111
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R+ ++ + L +PP GI P + +N +I GPD TP++GGT+KL L E YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDS 114
PP VRF+++++HPNI G ICLDIL+++WSP + +L SIQ S
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 111
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 72/108 (66%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDS 114
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ S
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 113
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 72/108 (66%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDS 114
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ S
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 115
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 72/108 (66%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDS 114
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ S
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 116
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 72/108 (66%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDS 114
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ S
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 111
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 72/108 (66%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDS 114
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ S
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 118
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 14/123 (11%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQF 59
M+ A KRLM ++K+L +PP GI P + + W A+I GP+DT ++ G F L F
Sbjct: 4 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 63
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAIL 106
DYP PP +RF MFHPNIY DG +C+ IL +WSP+ V IL
Sbjct: 64 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL 123
Query: 107 TSI 109
S+
Sbjct: 124 LSV 126
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 68/106 (64%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR++++ ++L DP GI+ P D+++ + I GP+ +P++ G F+L L +DYP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVF 112
P VRF+++++HPNI G ICLD+L+ WSP + +L SIQ
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQAL 113
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 68/106 (64%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR++++ ++L DP GI+ P D+++ + I GP+ +P++ G F+L L +DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVF 112
P VRF+++++HPNI G ICLD+L+ WSP + +L SIQ
Sbjct: 66 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQAL 111
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 14/123 (11%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQF 59
M+ A KRLM ++K+L +PP GI P + + W A+I GP+DT ++ G F L F
Sbjct: 6 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 65
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAIL 106
DYP PP +RF MFHPNIY DG +C+ IL +WSP+ V IL
Sbjct: 66 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL 125
Query: 107 TSI 109
S+
Sbjct: 126 LSV 128
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 14/123 (11%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQF 59
M+ A KRLM ++K+L +PP GI P + + W A+I GP+DT ++ G F L F
Sbjct: 3 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 62
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAIL 106
DYP PP +RF MFHPNIY DG +C+ IL +WSP+ V IL
Sbjct: 63 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL 122
Query: 107 TSI 109
S+
Sbjct: 123 LSV 125
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 14/123 (11%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQF 59
MS A+KRL+++ ++L +D P GI P+ +N+I +W+ +I GP DTP+ G F L+F
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAIL 106
+DYP PP + F + HPNIY +G +C+ IL + +WSP+ V IL
Sbjct: 61 PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 120
Query: 107 TSI 109
S+
Sbjct: 121 LSV 123
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
A KRLM ++K+L +PP GI P + + W A+I GP+DT ++ G F L F DY
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSI 109
P PP +RF MFHPNIY DG +C+ IL +WSP+ V IL S+
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 122
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR+ ++ + DPP S P+ ++I W + I GP + ++GG F L + F+ DYP K
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
PP V F +R++H NI + G ICLDIL++ WSP ++ +L SI
Sbjct: 66 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSI 108
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
+ST A KR+ ++ + DPP S P+ ++I W + I GP + ++GG F L + FT
Sbjct: 46 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
+YP KPP V F +R++H NI + G ICLDIL++ WSP ++ +L SI
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSI 153
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 67/106 (63%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR++++ ++L DP GI+ P D+++ + I GP+ +P++ G F+L L +DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVF 112
P VRF+++++HPNI G I LD+L+ WSP + +L SIQ
Sbjct: 66 APKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQAL 111
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KRL ++ + L GI+ P +++ W A + GP DT ++ +KLTL+F DYP K
Sbjct: 12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
PP V+F + +HPN+ G+ICLDIL+ W+ YDV IL S+Q
Sbjct: 72 PPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQ 115
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 66/106 (62%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR++++ ++L DP GI+ P D+++ + I GP+ +P++ G F+L L +DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVF 112
P VRF+++++HP I G I LD+L+ WSP + +L SIQ
Sbjct: 66 APKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQAL 111
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 8 RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKP 67
RL ++ K ++ + I +D++ W I GP+ TP++GG F L + DYP P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 68 PTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQVFDS 114
P ++FV++++HPNI + G+ICLD+L+N+WSP + L SIQ S
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS 134
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 120
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 120
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 117
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 2 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 61
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ
Sbjct: 62 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 118
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 119
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 6 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 65
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ
Sbjct: 66 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 122
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 120
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 119
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNS-----IMLWNAVIFGPDDTPWDGGTFKLT 56
S+ + RL + K+ ++D P G P +S +M W I G T W+GG +KLT
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 57 LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQ 110
+ F E+YP +PP RF +FHPN+Y G++CL IL + W P + IL IQ
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQ 123
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHP +Y G++CL IL+ W P + IL IQ
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 120
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
P KRL ++ L GIS P+ +++ W I G T ++ +KL+L+F Y
Sbjct: 30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 89
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
P PTV+F++ +HPN+ G+I LDIL+ +WS +YDV IL SIQ
Sbjct: 90 PYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQ 136
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+ G++CL IL+ W P + IL IQ
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQ 120
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++ L IL+ W P + IL IQ
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQ 117
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
+ F +DYP+ PP +F +FHPN+Y G++ L IL+ W P + IL IQ
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQ 117
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Query: 8 RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKP 67
RL R+ L +PP GI+ + + A I G +TP++ G FKL + E YP +P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 68 PTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQVFDS 114
P +RF++ ++HPNI + G ICLD+L + W P ++A +LTSIQ+ S
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMS 118
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 15/124 (12%)
Query: 1 MSTPA-RKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQ 58
M +P+ +K L+ + K LQ++P G D + W IFGP +T ++GG FK L+
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 59 FTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAI 105
F DYP PP RF+++M+HPNIY G +C+ IL +W+P +V I
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122
Query: 106 LTSI 109
L S+
Sbjct: 123 LLSV 126
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 7 KRLMRDFKRLQQDPPAGISGA-PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN 65
KR+M++ + ++ DP A I+ ++ I GP TP++GG F + ++ +YP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 66 KPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQVF 112
KPP ++F ++++HPNI + G+ICLDIL+N WSP+ + + L S+Q
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQAL 111
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFT 60
S ++K L+ + K LQ++P G D + W IFGP +T ++GG FK L+F
Sbjct: 2 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFP 61
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILT 107
DYP PP RF+++M+HPNIY G +C+ IL +W+P +V IL
Sbjct: 62 IDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 121
Query: 108 SI 109
S+
Sbjct: 122 SV 123
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 17/117 (14%)
Query: 7 KRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN 65
K+ + D +R+ P G S G DN I W ++ GP DT ++GG FK L F DYP
Sbjct: 9 KKQLADMRRV---PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 65
Query: 66 KPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSI 109
KPP ++F+S ++HPNI +G++C+ IL + +W P++ V IL S+
Sbjct: 66 KPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSV 122
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 7 KRLMRDFKRLQQDPPAGISGA-PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN 65
KR+M++ + ++ DP A I+ ++ I GP TP++GG F + ++ +YP
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 66 KPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQVF 112
KPP ++F ++++HPNI + G+ICLDIL+N WSP+ + + L S+Q
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQAL 112
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 14/115 (12%)
Query: 9 LMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKP 67
L R L ++P G S G DN + W +I GP DT ++GG FK L F +DYP +P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 68 PTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSI 109
P ++F++ ++HPN+ +G +C+ IL + +W PI+ V I+ S+
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 136
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 6 RKRLMRDFKRLQQ-------DPPA------GISGAPQDNSIMLWNAVIFGPDDTPWDGGT 52
+ RL+++ +QQ +P A G+S I W I GP TP++GG
Sbjct: 34 QARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGH 93
Query: 53 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQV 111
F L + DYP PP ++FV++++HPNI + G+ICLDIL+++WSP + L SIQ
Sbjct: 94 FTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQA 153
Query: 112 F 112
Sbjct: 154 M 154
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+ + ++ L DPP GI P + + I GP+ TP+ GG F++ L +D+P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVF 112
PP F++++FHPN+ A+G IC+++L+ W+ + +L +I+
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCL 121
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAP---QDNSIML--WNAVIFGPDDTPWDGGTFKL 55
MS+ +RL + K+ ++D P G P D S+ L W A I G + T W GG + +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
T+++ +YP+KPP V+F + +HPN+Y G+ICL IL W P + I+ +Q
Sbjct: 61 TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQ 117
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAP---QDNSIML--WNAVIFGPDDTPWDGGTFKL 55
MS+ +RL + K+ ++D P G P D S+ L W A I G + T W GG + +
Sbjct: 3 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 62
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQ 110
T+++ +YP+KPP V+F + +HPN+Y G+ICL IL W P + I+ +Q
Sbjct: 63 TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQ 119
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M A L RDF L+++ GI+ P +M W I G ++ W G F+LT+ FT
Sbjct: 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFT 79
Query: 61 EDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQN--QWSPIYDVAAILTSIQVFDS 114
+Y PP V+F++ FHPN+ G C+D L N +W+ Y +++IL ++QV S
Sbjct: 80 SEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLS 136
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWS 97
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWA 102
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 3 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 62
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWS 97
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+
Sbjct: 63 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWA 103
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWS 97
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+
Sbjct: 65 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWA 105
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 18 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 77
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWS 97
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+
Sbjct: 78 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWA 118
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWS 97
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWA 154
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNS-IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
A R++++ + LQ+ PP + D++ +++W+A++ PD P+ F L + F +Y
Sbjct: 2 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEY 60
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQVF 112
P KPP ++F ++++HPN+ +G ICL I+ ++ W P +L ++ V
Sbjct: 61 PFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVL 110
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNS-IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
A R++++ + LQ+ PP + D++ +++W+A++ PD P+ F L + F +Y
Sbjct: 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEY 63
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQVF 112
P KPP ++F ++++HPN+ +G ICL I+ ++ W P +L ++ V
Sbjct: 64 PFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVL 113
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 6 RKRLMRDFKRLQQDPPAGISGAPQD--NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
+KRL ++ LQ DPP G++ + NSI W + G T ++G F+L +F+ Y
Sbjct: 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83
Query: 64 PNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
P P V F HP++Y++G ICL IL WSP V ++ SI
Sbjct: 84 PFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSI 131
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 3 TPARKRLMRD-FKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTE 61
+P ++R+ D K ++ I G + + +GP TP++GG +K+ + +
Sbjct: 24 SPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKF-----YGPQGTPYEGGVWKVRVDLPD 78
Query: 62 DYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQVFDSFLP 117
YP K P++ F++++FHPNI A G++CLD++ W+ +YD+ I F+SFLP
Sbjct: 79 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNI------FESFLP 129
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 3 TPARKRLMRDFKRLQQDPPAGI----SGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQ 58
+ AR RL RD L P + S D S VI PD+ ++ G+ L
Sbjct: 28 SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLD 87
Query: 59 FTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
F E YP +PP V + ++FHPNI G++CL+IL+ WSP D+ +I+T +
Sbjct: 88 FNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGL 138
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 28 PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGS 86
P D W GP+ TP++ GT+ L +Q DYP K P++ F +R+ HPN+ GS
Sbjct: 33 PSDTVAEFW-VEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91
Query: 87 ICLDILQNQWSPIYDVAAILTSIQVFDSFLP 117
+CLD++ W+P+Y + I FD FLP
Sbjct: 92 VCLDVINQTWTPMYQLENI------FDVFLP 116
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 8 RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKP 67
R DF +L AG + S ++ + GP+ T ++GG +K+ + +DYP
Sbjct: 6 RKQCDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFAS 62
Query: 68 PTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQVFDSFLP 117
P++ F++++ HPN+ A GS+CLD++ W+P+Y + + VF+ FLP
Sbjct: 63 PSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSL------VNVFEVFLP 107
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 9/115 (7%)
Query: 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTED 62
T A +RL +D+ R+++DP I P ++I+ W+ V+ GP+ TP++GG + L F +
Sbjct: 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPRE 72
Query: 63 YPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQVF 112
+P KPP++ ++ PN + +CL I + W+P + V+ ILT + F
Sbjct: 73 FPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSF 123
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFT 60
S A +RLM++ + +++ D + +L W +I PD+ P+D G F++ + F
Sbjct: 2 SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFP 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSI 109
+YP KPP + F ++++HPNI G +CL ++ + W P ++ S+
Sbjct: 61 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSL 110
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
A +RLM++ + +++ D + +L W +I PD+ P+D G F++ + F +Y
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 61
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSI 109
P KPP + F ++++HPNI G +CL ++ + W P ++ S+
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSL 108
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTE 61
++ A+ R+ +D L IS + D+ +L ++ PD+ + G F + + +
Sbjct: 4 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQ 61
Query: 62 DYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+ +Q
Sbjct: 62 GYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQ 110
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A R+ ++ +PP + N+I +W G ++T + +KL + F +DYP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 65 NKPPTVRFVSR-MFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F+ + H ++Y++G ICL +L + ++P ++ ++ SI
Sbjct: 67 LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSI 112
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 14/112 (12%)
Query: 1 MSTPARKRLMRDFKRLQQD----PPAGISGAPQD--------NSIMLWNAVIFGPDDTPW 48
M + KR+++D K L ++ A SG+P ++I W + P D+ +
Sbjct: 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVY 64
Query: 49 DGG--TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSP 98
G T++L++ F++DYP++PPTVRFV+ ++ P + +G IC ++ + W+P
Sbjct: 65 GGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTP 116
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTE 61
++ A+ R+ +D L IS + D+ +L ++ PD+ + G F + + +
Sbjct: 24 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQ 81
Query: 62 DYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 110
YP+ PP V+ + ++HPNI +G++ L+IL+ W P+ + +I+ +Q
Sbjct: 82 GYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQ 130
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Query: 1 MSTPARKRLMRDFKRLQQ---------DPPAGI--SGAPQDNS-IMLWNAVIFGPDDTPW 48
M+ R+++++K + + +P GI S P D + + W A+I GP DTP+
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 49 DGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAI 105
+ F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 106 LTSI 109
+ ++
Sbjct: 123 VHAV 126
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Query: 1 MSTPARKRLMRDFKRLQQ---------DPPAGI--SGAPQDNS-IMLWNAVIFGPDDTPW 48
M+ R+++++K + + +P GI S P D + + W A+I GP DTP+
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 49 DGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAI 105
+ F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 106 LTSI 109
+ ++
Sbjct: 123 VHAV 126
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Query: 1 MSTPARKRLMRDFKRLQQ---------DPPAGI--SGAPQDNS-IMLWNAVIFGPDDTPW 48
M+ R+++++K + + +P GI S P D + + W A+I GP DTP+
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 49 DGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAI 105
+ F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 106 LTSI 109
+ ++
Sbjct: 123 VHAV 126
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A R+ ++ ++PP + ++I +W G ++T + +K+ + F ++YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 65 NKPPTVRFVSR-MFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
KPP V F+ + H ++Y++G ICL +L + ++P ++ ++ SI
Sbjct: 81 LKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSI 126
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 30 DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-----SRMFHPNIYAD 84
+ + + +I GP DTP+ G F+ + F +DYP+ PP V S F+PN+Y D
Sbjct: 106 EERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYND 165
Query: 85 GSICLDIL-------QNQWSP-IYDVAAILTSIQ 110
G +CL IL + +W+P +L S+Q
Sbjct: 166 GKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQ 199
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
K L+++ L+ + P D + + + PD+ + GG F+ + + Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQ------WSP-------IYDVAAILTSIQVFD 113
PP V+ +++++HPNI G ICL +L+ W+P ++ + ++ T + FD
Sbjct: 77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFD 136
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
K L+++ L+ + P D + + + PD+ + GG F+ + + Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQ------WSP-------IYDVAAILTSIQVFD 113
PP V+ +++++HPNI G ICL +L+ W+P ++ + ++ T + FD
Sbjct: 77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFD 136
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 4 PARKRLMRDFKRLQQ-DPPAGIS-GAPQDNSIML--WNAVIFGPDDTPWDGGTFKLTLQF 59
P RL+ + +R Q+ + G+S G + I L W+ IFG T ++ + LT+
Sbjct: 25 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFC 84
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSIC---LDILQNQWSPIYDVAAILTSIQ 110
++YP+ PPTV+F +++ + G + L IL+N W+ Y + IL S++
Sbjct: 85 DDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLR 137
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 4 PARKRLMRDFKRLQQ-DPPAGIS-GAPQDNSIML--WNAVIFGPDDTPWDGGTFKLTLQF 59
P RL+ + +R Q+ + G+S G + I L W+ IFG T ++ + LT+
Sbjct: 21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFC 80
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSIC---LDILQNQWSPIYDVAAILTSIQ 110
++YP+ PPTV+F +++ + G + L IL+N W+ Y + IL S++
Sbjct: 81 DDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLR 133
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI- 87
+D ++ W +I GP T ++ + L ++ YP PP VRFV+++ + + +
Sbjct: 64 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
Query: 88 ---CLDILQNQWSPIYDVAAILTSIQ 110
+ +L +W Y + +L ++
Sbjct: 124 DPRAISVLA-KWQNSYSIKVVLQELR 148
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI- 87
+D ++ W +I GP T ++ + L ++ YP PP VRFV+++ + + +
Sbjct: 36 EDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
Query: 88 ---CLDILQNQWSPIYDVAAILTSIQ 110
+ +L +W Y + +L ++
Sbjct: 96 DPRAISVLA-KWQNSYSIKVVLQELR 120
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI- 87
+D ++ W +I GP T ++ + L ++ YP PP VRFV+++ + + +
Sbjct: 54 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
Query: 88 ---CLDILQNQWSPIYDVAAILTSIQ 110
+ +L +W Y + +L ++
Sbjct: 114 DPRAISVLA-KWQNSYSIKVVLQELR 138
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
+D ++ W +I GP T ++ + L ++ YP PP+VRFV+++ + N + S
Sbjct: 34 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI-NMNGINNSSGM 92
Query: 89 LDI----LQNQWSPIYDVAAILTSIQ 110
+D + +W Y + +L ++
Sbjct: 93 VDARSIPVLAKWQNSYSIKVVLQELR 118
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
+D ++ W +I GP T ++ + L ++ YP PP+VRFV+++ + N + S
Sbjct: 44 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI-NMNGINNSSGM 102
Query: 89 LDI----LQNQWSPIYDVAAILTSIQ 110
+D + +W Y + +L ++
Sbjct: 103 VDARSIPVLAKWQNSYSIKVVLQELR 128
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
+D ++ W +I GP T ++ + L ++ YP PP+VRFV+++ I +
Sbjct: 33 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
Query: 89 ----LDILQNQWSPIYDVAAILTSIQ 110
+ +L +W Y + +L ++
Sbjct: 93 DARSIPVLA-KWQNSYSIKVVLQELR 117
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
+D ++ W +I GP T ++ + L ++ YP PP+VRFV+++ + N + S
Sbjct: 39 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI-NMNGINNSSGM 97
Query: 89 LDI----LQNQWSPIYDVAAILTSIQ 110
+D + +W Y + +L ++
Sbjct: 98 VDARSIPVLAKWQNSYSIKVVLQELR 123
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 2 STPARKRLM---RDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDD-----------TP 47
S A RLM RD R Q + ++S+ WN + D
Sbjct: 4 SVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKE 63
Query: 48 WDGGTF-KLTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAA 104
+G F L F +++P PP VR VS + + G+IC+++L Q WS Y + +
Sbjct: 64 KEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIES 123
Query: 105 ILTSI 109
++ I
Sbjct: 124 VIMQI 128
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 4 PARKRLMRDFKRLQQD--PPAGISGAPQDNSIML--WNAVIFGPDDTPWDGGTFKLTLQF 59
P RL+ + ++ ++ P + G + I + WN I GP + + + L++
Sbjct: 5 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDC 64
Query: 60 TEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQ 110
+YP+ PP V F+S++ P + G + D W Y + +L ++
Sbjct: 65 GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLR 117
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 4 PARKRLMRDFKRLQQD--PPAGISGAPQDNSIML--WNAVIFGPDDTPWDGGTFKLTLQF 59
P RL+ + ++ ++ P + G + I + WN I GP + + + L++
Sbjct: 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDC 65
Query: 60 TEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQ 110
+YP+ PP V F+S++ P + G + D W Y + +L ++
Sbjct: 66 GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLR 118
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 55 LTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSI 109
L F +++P PP VR V + + G++C+++L Q WS Y + +++ I
Sbjct: 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQI 149
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|2 Chain 2, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|3 Chain 3, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|4 Chain 4, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
Length = 323
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIF------GPDDTPW--DGGTFKL-TL 57
K+LM + D PA + N M+WN F P D W +GG F + +L
Sbjct: 175 KKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSL 234
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNI 81
+ NK ++ ++ + P++
Sbjct: 235 AIPANAKNKEGALKLINFLLRPDV 258
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With
Spermidine (monomer Form)
Length = 325
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIF------GPDDTPW--DGGTFKL-TL 57
K+LM + D PA + N M+WN F P D W +GG F + +L
Sbjct: 177 KKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSL 236
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNI 81
+ NK ++ ++ + P++
Sbjct: 237 AIPANAKNKEGALKLINFLLRPDV 260
>pdb|1YVG|A Chain A, Structural Analysis Of The Catalytic Domain Of Tetanus
Neurotoxin
Length = 468
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 13 FKRLQQDPPAGISGAPQDNSIMLWNAVIFGP 43
F L+QDP SGA S ML N +IFGP
Sbjct: 136 FNLLEQDP----SGATT-KSAMLTNLIIFGP 161
>pdb|1Z7H|A Chain A, 2.3 Angstrom Crystal Structure Of Tetanus Neurotoxin Light
Chain
Length = 447
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 13 FKRLQQDPPAGISGAPQDNSIMLWNAVIFGP 43
F L+QDP SGA S ML N +IFGP
Sbjct: 141 FNLLEQDP----SGA-TTKSAMLTNLIIFGP 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,001,366
Number of Sequences: 62578
Number of extensions: 167595
Number of successful extensions: 363
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 123
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)