Query 033535
Match_columns 117
No_of_seqs 143 out of 1078
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 8.5E-49 1.8E-53 262.2 12.9 115 1-115 1-117 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 3E-48 6.5E-53 254.9 10.9 111 5-115 2-112 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 9.9E-47 2.1E-51 242.3 10.9 116 1-116 1-116 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 6.5E-44 1.4E-48 240.2 14.6 111 5-115 3-113 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.7E-43 5.9E-48 236.2 14.3 110 6-115 3-112 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 1.2E-40 2.5E-45 225.6 10.4 114 1-115 1-118 (200)
7 KOG0421 Ubiquitin-protein liga 100.0 3E-40 6.5E-45 215.3 8.8 112 4-115 29-140 (175)
8 PF00179 UQ_con: Ubiquitin-con 100.0 2.7E-39 5.7E-44 215.1 10.3 108 8-115 1-110 (140)
9 cd00195 UBCc Ubiquitin-conjuga 100.0 1E-38 2.2E-43 212.6 13.1 109 7-115 2-111 (141)
10 KOG0425 Ubiquitin-protein liga 100.0 1.5E-38 3.3E-43 209.8 11.9 114 3-116 4-131 (171)
11 KOG0424 Ubiquitin-protein liga 100.0 9.2E-38 2E-42 203.4 11.4 116 1-116 1-123 (158)
12 KOG0426 Ubiquitin-protein liga 100.0 8.3E-38 1.8E-42 201.4 11.0 115 1-115 1-129 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.1E-36 2.3E-41 203.7 13.1 109 7-115 1-111 (145)
14 KOG0427 Ubiquitin conjugating 100.0 1.9E-36 4.1E-41 194.8 11.6 114 2-116 13-127 (161)
15 KOG0894 Ubiquitin-protein liga 100.0 2.9E-34 6.2E-39 198.2 12.4 112 1-116 1-118 (244)
16 KOG0422 Ubiquitin-protein liga 100.0 1.9E-34 4E-39 187.1 10.3 110 5-115 3-114 (153)
17 KOG0420 Ubiquitin-protein liga 100.0 4.3E-32 9.2E-37 181.6 8.2 110 3-115 27-140 (184)
18 KOG0423 Ubiquitin-protein liga 100.0 1E-31 2.2E-36 180.3 4.9 112 4-115 10-121 (223)
19 KOG0416 Ubiquitin-protein liga 100.0 6.2E-31 1.3E-35 175.8 7.5 106 1-110 1-107 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 4.4E-27 9.5E-32 165.6 10.4 112 3-117 10-124 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 2.5E-19 5.4E-24 145.9 7.0 107 7-113 854-969 (1101)
22 KOG0429 Ubiquitin-conjugating 99.8 2.6E-18 5.6E-23 119.6 10.1 108 7-115 22-133 (258)
23 KOG0895 Ubiquitin-conjugating 99.8 1E-17 2.2E-22 136.6 11.3 113 4-116 282-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 4E-15 8.7E-20 96.5 7.7 111 4-114 5-122 (138)
25 KOG0897 Predicted ubiquitin-co 99.0 7.4E-10 1.6E-14 70.2 3.6 63 52-114 12-76 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.9 2.2E-09 4.7E-14 70.8 6.0 68 49-116 34-107 (133)
27 PF05743 UEV: UEV domain; Int 98.8 4.4E-08 9.5E-13 63.7 7.3 87 30-117 25-119 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.4 1.4E-07 2.9E-12 62.3 1.0 95 6-106 26-135 (161)
29 KOG2391 Vacuolar sorting prote 97.9 8.7E-05 1.9E-09 55.5 8.4 77 40-117 55-139 (365)
30 KOG3357 Uncharacterized conser 97.6 0.00012 2.5E-09 47.9 4.5 95 6-106 29-138 (167)
31 PF05773 RWD: RWD domain; Int 97.1 0.0027 5.8E-08 39.7 6.1 69 7-76 4-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 97.0 0.021 4.5E-07 37.2 9.7 92 23-115 13-121 (122)
33 smart00591 RWD domain in RING 96.9 0.02 4.4E-07 35.4 9.0 26 50-75 40-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 96.3 0.056 1.2E-06 36.9 8.6 62 54-115 56-126 (162)
35 KOG4018 Uncharacterized conser 93.3 0.4 8.7E-06 34.1 6.1 68 1-73 1-71 (215)
36 PF09765 WD-3: WD-repeat regio 93.2 0.17 3.7E-06 37.7 4.4 86 6-114 101-187 (291)
37 KOG0309 Conserved WD40 repeat- 92.2 0.82 1.8E-05 38.4 7.2 68 7-75 423-491 (1081)
38 PF06113 BRE: Brain and reprod 82.9 9 0.0002 29.2 7.2 67 33-111 53-122 (333)
39 smart00340 HALZ homeobox assoc 80.7 1.8 3.8E-05 22.9 2.0 17 4-20 19-35 (44)
40 PF13950 Epimerase_Csub: UDP-g 76.8 2.7 5.9E-05 23.9 2.3 23 95-117 37-59 (62)
41 cd00421 intradiol_dioxygenase 71.4 7.8 0.00017 25.7 3.8 25 49-73 64-89 (146)
42 cd03457 intradiol_dioxygenase_ 66.7 11 0.00023 26.3 3.8 26 49-74 85-110 (188)
43 PF14460 Prok-E2_D: Prokaryoti 66.4 9.4 0.0002 26.2 3.4 17 75-91 91-110 (175)
44 TIGR03737 PRTRC_B PRTRC system 65.5 12 0.00026 27.0 3.9 35 75-113 132-170 (228)
45 KOG0177 20S proteasome, regula 65.1 3.2 6.8E-05 29.1 0.9 30 84-113 135-164 (200)
46 PF03366 YEATS: YEATS family; 64.3 29 0.00062 20.9 4.9 42 34-77 2-43 (84)
47 cd03459 3,4-PCD Protocatechuat 61.4 16 0.00034 24.7 3.8 25 50-74 72-101 (158)
48 PRK11700 hypothetical protein; 55.1 62 0.0014 22.7 5.9 71 32-108 87-184 (187)
49 KOG4445 Uncharacterized conser 54.6 18 0.00039 27.4 3.3 25 51-75 45-69 (368)
50 PF06113 BRE: Brain and reprod 53.0 21 0.00045 27.2 3.5 24 51-74 306-329 (333)
51 TIGR02423 protocat_alph protoc 49.6 30 0.00064 24.3 3.7 25 49-73 95-124 (193)
52 PF12065 DUF3545: Protein of u 49.5 14 0.0003 21.0 1.6 14 5-18 35-48 (59)
53 PF00845 Gemini_BL1: Geminivir 47.0 48 0.001 24.4 4.4 44 35-79 104-156 (276)
54 cd03463 3,4-PCD_alpha Protocat 46.5 37 0.0008 23.6 3.7 24 50-73 92-120 (185)
55 PF04881 Adeno_GP19K: Adenovir 44.1 44 0.00096 22.0 3.5 31 29-59 43-74 (139)
56 cd05845 Ig2_L1-CAM_like Second 40.1 88 0.0019 19.2 4.7 26 48-75 16-41 (95)
57 KOG3285 Spindle assembly check 39.4 67 0.0014 22.5 4.0 42 5-46 120-161 (203)
58 PRK15486 hpaC 4-hydroxyphenyla 39.2 22 0.00047 24.4 1.7 69 9-94 6-77 (170)
59 KOG1814 Predicted E3 ubiquitin 38.1 1.5E+02 0.0033 23.5 6.2 20 53-72 76-96 (445)
60 TIGR02296 HpaC 4-hydroxyphenyl 37.0 20 0.00044 23.9 1.2 30 65-94 36-68 (154)
61 COG2819 Predicted hydrolase of 35.4 71 0.0015 23.6 3.9 30 45-74 15-46 (264)
62 PF05751 FixH: FixH; InterPro 34.6 1.3E+02 0.0027 19.4 5.3 55 7-62 43-97 (146)
63 TIGR02439 catechol_proteo cate 33.9 70 0.0015 23.9 3.7 24 50-73 180-221 (285)
64 PF11745 DUF3304: Protein of u 33.6 21 0.00045 22.8 0.8 20 83-102 49-68 (118)
65 TIGR03615 RutF pyrimidine util 32.6 27 0.00059 23.3 1.3 31 64-94 40-73 (156)
66 KOG1047 Bifunctional leukotrie 32.4 48 0.001 27.3 2.8 30 46-76 248-280 (613)
67 cd03461 1,2-HQD Hydroxyquinol 32.0 79 0.0017 23.5 3.7 25 49-73 171-213 (277)
68 PF09606 Med15: ARC105 or Med1 31.8 15 0.00033 31.2 0.0 23 52-74 715-737 (799)
69 PF14135 DUF4302: Domain of un 31.6 1.5E+02 0.0032 21.2 5.0 15 68-82 84-100 (235)
70 cd03464 3,4-PCD_beta Protocate 31.1 85 0.0018 22.5 3.7 24 50-73 122-152 (220)
71 COG1853 Conserved protein/doma 31.1 39 0.00085 22.9 1.9 30 66-95 45-77 (176)
72 PF09929 DUF2161: Uncharacteri 30.5 65 0.0014 20.9 2.7 20 3-22 26-45 (118)
73 PF03487 IL13: Interleukin-13; 30.1 56 0.0012 17.0 1.9 17 3-19 26-42 (43)
74 PHA03200 uracil DNA glycosylas 30.0 60 0.0013 23.9 2.8 57 33-92 82-153 (255)
75 TIGR02438 catachol_actin catec 30.0 92 0.002 23.2 3.8 24 50-73 184-225 (281)
76 cd03460 1,2-CTD Catechol 1,2 d 29.7 91 0.002 23.3 3.7 24 50-73 176-217 (282)
77 PF00779 BTK: BTK motif; Inte 29.5 20 0.00043 17.7 0.2 15 76-90 2-17 (32)
78 TIGR02422 protocat_beta protoc 29.5 93 0.002 22.3 3.6 24 50-73 117-147 (220)
79 TIGR00628 ung uracil-DNA glyco 29.2 1.1E+02 0.0024 21.8 4.0 36 32-70 49-86 (212)
80 PF14455 Metal_CEHH: Predicted 27.8 77 0.0017 21.7 2.8 65 7-75 8-76 (177)
81 COG0544 Tig FKBP-type peptidyl 27.3 1.8E+02 0.0039 23.1 5.2 16 51-66 209-224 (441)
82 TIGR02465 chlorocat_1_2 chloro 25.9 1.2E+02 0.0027 22.1 3.8 25 49-73 149-191 (246)
83 TIGR02663 nifX nitrogen fixati 25.8 68 0.0015 20.2 2.2 18 100-117 94-111 (119)
84 COG3866 PelB Pectate lyase [Ca 25.6 1.3E+02 0.0029 22.9 4.0 38 35-73 198-239 (345)
85 PF06305 DUF1049: Protein of u 25.4 68 0.0015 17.8 2.0 16 4-19 48-63 (68)
86 PF07380 Pneumo_M2: Pneumoviru 24.7 1.7E+02 0.0037 17.7 3.7 55 56-110 6-74 (89)
87 COG4957 Predicted transcriptio 24.5 39 0.00084 22.5 0.9 17 53-69 104-120 (148)
88 PRK11702 hypothetical protein; 24.0 53 0.0011 21.0 1.4 13 1-13 1-13 (108)
89 PF14909 SPATA6: Spermatogenes 22.5 2.5E+02 0.0054 18.8 5.1 51 23-75 86-137 (140)
90 PF02970 TBCA: Tubulin binding 22.0 1E+02 0.0022 18.7 2.4 16 3-18 6-21 (90)
91 TIGR01462 greA transcription e 21.5 1E+02 0.0022 20.4 2.5 19 1-19 2-20 (151)
92 cd03458 Catechol_intradiol_dio 21.1 1.7E+02 0.0037 21.5 3.7 24 50-73 156-197 (256)
93 COG3140 Uncharacterized protei 21.0 1.7E+02 0.0037 16.4 2.9 24 1-24 28-52 (60)
94 CHL00130 rbcS ribulose-1,5-bis 20.8 2.7E+02 0.0059 18.5 4.7 31 7-38 62-93 (138)
95 PF09458 H_lectin: H-type lect 20.4 1.5E+02 0.0033 16.5 2.8 20 53-73 3-22 (72)
96 PRK05892 nucleoside diphosphat 20.2 1.1E+02 0.0024 20.6 2.5 18 1-18 8-25 (158)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-49 Score=262.16 Aligned_cols=115 Identities=54% Similarity=1.080 Sum_probs=111.2
Q ss_pred CChH-HHHHHHHHHHHhhhCCCCCeEEecCCC-CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcc
Q 033535 1 MSTP-ARKRLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (117)
Q Consensus 1 Ms~~-~~~Rl~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~H 78 (117)
|++. |.+||++|++++++++++++++.+.++ |+++|++.|.||++||||||.|++.|.||++||++||+|+|.|+|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 4554 999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 79 pnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|||+.+|+||+|+|+++|+|++++++||++|+++|.+
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~ 117 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLS 117 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999987
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-48 Score=254.94 Aligned_cols=111 Identities=45% Similarity=0.958 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCC
Q 033535 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 84 (117)
+.+||+||++++++++++||++.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||++.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 85 GSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|.||+|+|++.|+|+++++.||++|++||++
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~ 112 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSD 112 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999986
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-47 Score=242.29 Aligned_cols=116 Identities=80% Similarity=1.338 Sum_probs=114.1
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
||++|.+||.+|+++++++++.||+..|.++|++.|.++|+||++|||+||+|++.|.|+++||.+||.|+|++.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhccC
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
|+.+|.+|+|+|...|+|.|++.+||.+||+||++.
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dP 116 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDP 116 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999863
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=6.5e-44 Score=240.24 Aligned_cols=111 Identities=41% Similarity=0.844 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCC
Q 033535 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 84 (117)
+.|||++|++++++++++|+.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 85 GSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|.||+++|.++|+|++|+++||++|+++|.+
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~ 113 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSA 113 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999976
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.7e-43 Score=236.16 Aligned_cols=110 Identities=45% Similarity=0.934 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCCC
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 85 (117)
.+||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 86 SICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 86 ~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.||+++|.++|+|++|+++||.+|+++|.+
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll~~ 112 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLLTD 112 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999975
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=225.57 Aligned_cols=114 Identities=39% Similarity=0.774 Sum_probs=110.1
Q ss_pred CChHHHHHHHHHHHHhhhCC---CCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCc
Q 033535 1 MSTPARKRLMRDFKRLQQDP---PAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~---~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~ 77 (117)
|+. +.+|+++|.+++.+++ ..||.++..++|+.+..+.|.||+|||||||+|.+.|.+|++|||+||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 777 8999999999999998 679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
||||+ .+|.||+|+|++.|.+++|++++|++||++|++
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~ 118 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCA 118 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcC
Confidence 99998 799999999999999999999999999999986
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-40 Score=215.31 Aligned_cols=112 Identities=43% Similarity=0.822 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccC
Q 033535 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (117)
...|||++|+..|+....+||++.|++||++.|..+|.||.+|+|+|..|++.+.||.+||++||.|.|.|++||||||.
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 84 DGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 84 ~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.|.||+|+|++.|+..|++++||++||+||-+
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGE 140 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGE 140 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999864
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.7e-39 Score=215.14 Aligned_cols=108 Identities=49% Similarity=1.000 Sum_probs=99.0
Q ss_pred HHHHHHHHhhhCCCCCeEEecCCC-CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCCCc
Q 033535 8 RLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (117)
Q Consensus 8 Rl~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 86 (117)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999998776 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC-CCCCcCCHHHHHHHHHHhhcc
Q 033535 87 ICLDILQN-QWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 87 icl~~l~~-~W~p~~~i~~vl~~i~~ll~~ 115 (117)
||+++|.. .|+|++++.+||.+|+++|.+
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~ 110 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSE 110 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHS
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhC
Confidence 99999985 499999999999999999964
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1e-38 Score=212.62 Aligned_cols=109 Identities=48% Similarity=1.019 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCCCc
Q 033535 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 86 (117)
|||++|++++++++++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||.|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCC-CCCcCCHHHHHHHHHHhhcc
Q 033535 87 ICLDILQNQ-WSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 87 icl~~l~~~-W~p~~~i~~vl~~i~~ll~~ 115 (117)
||+++|..+ |+|++++++||.+|+++|.+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~ 111 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNE 111 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhC
Confidence 999999887 99999999999999999983
No 10
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=209.75 Aligned_cols=114 Identities=41% Similarity=0.819 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEecCC-CCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAPQD-NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
+.+..-|+++|++|++++.+|+.+...+ .|+++|.|.|.||++|+||||.|+..+.||.+||.+||+++|.|++|||||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 3466789999999999999999998755 599999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCC-------------CCCCCcCCHHHHHHHHHHhhccC
Q 033535 82 YADGSICLDILQ-------------NQWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 82 ~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
+++|.+|+++|- +.|+|..|+++|+++|.+||++.
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~P 131 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSP 131 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCC
Confidence 999999999993 35999999999999999999863
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-38 Score=203.44 Aligned_cols=116 Identities=39% Similarity=0.796 Sum_probs=110.2
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCC-----CCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQD-----NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~-----~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
||+.+..||+.|-+.+.++.+-|+++.|.. .|+..|.+.|-|++||+||||.|++.+.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 889999999999999999999999998842 478999999999999999999999999999999999999999999
Q ss_pred CccccccCCCcEeecCCCCC--CCCcCCHHHHHHHHHHhhccC
Q 033535 76 MFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~~--W~p~~~i~~vl~~i~~ll~~~ 116 (117)
.|||||+.+|.|||++|.++ |+|++||.+||.+||.||.+.
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~P 123 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTP 123 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCC
Confidence 99999999999999999876 999999999999999999763
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-38 Score=201.37 Aligned_cols=115 Identities=43% Similarity=0.900 Sum_probs=109.9
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEec-CCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~-~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (117)
|+..|+|||++|+++|..++++||.+.| .+||+++|.+.|.||+||+|+||.|..++.||.|||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 7889999999999999999999999988 678999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeecCCC-------------CCCCCcCCHHHHHHHHHHhhcc
Q 033535 80 NIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 80 nv~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
||+.+|++|+++|- +.|+|..+++.||+++-++|.+
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaE 129 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAE 129 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcC
Confidence 99999999999983 3599999999999999999976
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.1e-36 Score=203.73 Aligned_cols=109 Identities=48% Similarity=0.996 Sum_probs=105.0
Q ss_pred HHHHHHHHHhhhCCCCCeEEecCCC-CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCCC
Q 033535 7 KRLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 85 (117)
+||++|++++++++++|+.+.+.++ |+++|++++.||++|+|+||.|++.|.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988765 999999999999999999999999999999999999999999999999999999
Q ss_pred cEeecCCC-CCCCCcCCHHHHHHHHHHhhcc
Q 033535 86 SICLDILQ-NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 86 ~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.+|+++|. ++|+|++++++||.+|+++|.+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~ 111 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSE 111 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhC
Confidence 99999998 8999999999999999999976
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=194.81 Aligned_cols=114 Identities=34% Similarity=0.658 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccC-cccc
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPN 80 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i-~Hpn 80 (117)
+..|++||+||+.+++.+++.|+... ..+|+.+|.+.+.|.+||.|+|.+|.+.+.||+.||++.|.|.|..++ .||+
T Consensus 13 s~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPH 91 (161)
T KOG0427|consen 13 SKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPH 91 (161)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCc
Confidence 45689999999999999999999887 788999999999999999999999999999999999999999999875 7999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhccC
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
|+++|.||+++|.++|+|++++.+|.++|.++|++.
T Consensus 92 iYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 92 IYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred eecCCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999875
No 15
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=198.17 Aligned_cols=112 Identities=36% Similarity=0.713 Sum_probs=103.1
Q ss_pred CC-hHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc--Cc
Q 033535 1 MS-TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MF 77 (117)
Q Consensus 1 Ms-~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~--i~ 77 (117)
|+ ..|.|||+|||+.|+++|.++|.+++.++|+++||.++.||+||||+||.|+.++.||++||++||.|++.|+ +|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 44 4699999999999999999999999999999999999999999999999999999999999999999999986 45
Q ss_pred cccccCCCcEeecCC---CCCCCCcCCHHHHHHHHHHhhccC
Q 033535 78 HPNIYADGSICLDIL---QNQWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 78 Hpnv~~~G~icl~~l---~~~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
-+| -++||++. .+.|+|+|++.+||.+|.++|.++
T Consensus 81 ktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 81 KTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred ecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC
Confidence 544 69999876 488999999999999999998764
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=187.13 Aligned_cols=110 Identities=26% Similarity=0.693 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhhCCCCCeE-EecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccC
Q 033535 5 ARKRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~i~-~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (117)
+.+||.||+.+|++++...+. +..+++|++.|++.+. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 789999999999999987664 4557889999999998 89999999999999999999999999999999999999999
Q ss_pred CCcEeecCCC-CCCCCcCCHHHHHHHHHHhhcc
Q 033535 84 DGSICLDILQ-NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 84 ~G~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.|.+|+.++. |+|+|++..++||++|.+++.+
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaLi~liN~ 114 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQALIALIND 114 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHHHHHhcC
Confidence 9999999985 7899999999999999999875
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.3e-32 Score=181.63 Aligned_cols=110 Identities=29% Similarity=0.665 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEE--ecCCCCc--ceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISG--APQDNSI--MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~--~~~~~~~--~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~H 78 (117)
|.++-||++|..++. -+++++. ....++. .+++++|. |+++.|+||.|.|.+.+|+.||++||+|.|.|++||
T Consensus 27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 567888888888886 4555553 2223443 35999997 999999999999999999999999999999999999
Q ss_pred ccccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 79 pnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|||+.+|.|||++|+++|+|+.++.+|+.+++.||.+
T Consensus 104 PNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~e 140 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLE 140 (184)
T ss_pred CCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999865
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-31 Score=180.28 Aligned_cols=112 Identities=31% Similarity=0.684 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccC
Q 033535 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (117)
...+.+.+|++.+...++.||.|.+.++|+....+.|.||.||||++|.|++++.+..|||.+||+-.|+|+||||||..
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 84 DGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 84 ~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|.||++.|+.+|+|.++|++||..|..+|..
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~ 121 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIE 121 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeec
Confidence 99999999999999999999999999998864
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-31 Score=175.81 Aligned_cols=106 Identities=33% Similarity=0.787 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
|++ ..||+..|..+|... +..|...++++.+++|.+.||++|||+||.+++++.+|++||++.|.|.|+++|||||
T Consensus 1 ms~-~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 1 MSS-GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred CCC-cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 453 558999999998755 6678888999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCcEeecCCCCCCCCcCCHHHHHHHHH
Q 033535 81 IY-ADGSICLDILQNQWSPIYDVAAILTSIQ 110 (117)
Q Consensus 81 v~-~~G~icl~~l~~~W~p~~~i~~vl~~i~ 110 (117)
|+ .+|.|||+.+...|+|.+.+..|+..+.
T Consensus 77 IDe~SGsVCLDViNQtWSp~yDL~NIfetfL 107 (189)
T KOG0416|consen 77 IDEASGSVCLDVINQTWSPLYDLVNIFETFL 107 (189)
T ss_pred chhccCccHHHHHhhhhhHHHHHHHHHHHHh
Confidence 99 7999999999999999999988886643
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.4e-27 Score=165.59 Aligned_cols=112 Identities=29% Similarity=0.631 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (117)
+.+.|||+||.++++ ++.......+.++|+++||++|.||.||-||||+|+.+|.||.+||++||.+..+|+- ..+.
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Ccee
Confidence 468999999999998 7777888999999999999999999999999999999999999999999999999853 2344
Q ss_pred CCCcEeecCC---CCCCCCcCCHHHHHHHHHHhhccCC
Q 033535 83 ADGSICLDIL---QNQWSPIYDVAAILTSIQVFDSFLP 117 (117)
Q Consensus 83 ~~G~icl~~l---~~~W~p~~~i~~vl~~i~~ll~~~p 117 (117)
.+.+||+++. .+.|.|+|+|++.|++|..+|-+.|
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p 124 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKP 124 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccCCC
Confidence 5678999987 4889999999999999999986654
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.5e-19 Score=145.93 Aligned_cols=107 Identities=36% Similarity=0.706 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc--CccccccCC
Q 033535 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYAD 84 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv~~~ 84 (117)
+..+.|++-+..+.+.||.|+..++.+....+.|.||.||||.+|.|.|.+.||++||.+||.+...+. +++||.+.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 344456666777888899999999988888999999999999999999999999999999999999974 789999999
Q ss_pred CcEeecCCC-------CCCCCcCCHHHHHHHHHHhh
Q 033535 85 GSICLDILQ-------NQWSPIYDVAAILTSIQVFD 113 (117)
Q Consensus 85 G~icl~~l~-------~~W~p~~~i~~vl~~i~~ll 113 (117)
|++|+++|. +-|+|+-++.+||.+||.|.
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~ 969 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLV 969 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhh
Confidence 999999995 44999889999999999984
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.6e-18 Score=119.64 Aligned_cols=108 Identities=24% Similarity=0.429 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCC--CCeEEEeccCcccccc-C
Q 033535 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK--PPTVRFVSRMFHPNIY-A 83 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~--pP~v~f~t~i~Hpnv~-~ 83 (117)
..|+.|+..+.+++.+||+|.|.-.|-+.|.++|++.+| .|.||.|+|+|.+|++||.. -|+|.|.+.++||+|. .
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 457889999999999999999999999999999997766 89999999999999999954 7999999999999999 7
Q ss_pred CCcEeecCCCCCCCCcC-CHHHHHHHHHHhhcc
Q 033535 84 DGSICLDILQNQWSPIY-DVAAILTSIQVFDSF 115 (117)
Q Consensus 84 ~G~icl~~l~~~W~p~~-~i~~vl~~i~~ll~~ 115 (117)
++.+|++.....|+-.- .+.+||..+|..|.+
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~d 133 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYD 133 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcC
Confidence 99999988777798875 699999999999865
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1e-17 Score=136.64 Aligned_cols=113 Identities=35% Similarity=0.708 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc---Ccccc
Q 033535 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR---MFHPN 80 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~---i~Hpn 80 (117)
...+|+++|++-+.++.++|+.+.+.+..+...++.|.||.||||++|.|.|.|.||..||..||.+.++|. ++.||
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 467999999999999999999999999999999999999999999999999999999999999999999976 78999
Q ss_pred ccCCCcEeecCCC-------CCCCCc-CCHHHHHHHHHHhhccC
Q 033535 81 IYADGSICLDILQ-------NQWSPI-YDVAAILTSIQVFDSFL 116 (117)
Q Consensus 81 v~~~G~icl~~l~-------~~W~p~-~~i~~vl~~i~~ll~~~ 116 (117)
.+.+|+||+++|. +.|+|. -++.++|.+||.+...+
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 9999999999883 569999 78999999999998765
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4e-15 Score=96.50 Aligned_cols=111 Identities=21% Similarity=0.446 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEecC--CCC--cceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccc
Q 033535 4 PARKRLMRDFKRLQQDPPAGISGAPQ--DNS--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i~~~~~--~~~--~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (117)
....||.+|+++=++...++..-... ++| +..|...|.||+.|+||+..|.++|..-++||..||.|+|.+++--.
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 45678999999988877766543332 233 45899999999999999999999999999999999999999999888
Q ss_pred ccc-CCCcEeecCC--CCCCCCcCCHHHHHHHHHHhhc
Q 033535 80 NIY-ADGSICLDIL--QNQWSPIYDVAAILTSIQVFDS 114 (117)
Q Consensus 80 nv~-~~G~icl~~l--~~~W~p~~~i~~vl~~i~~ll~ 114 (117)
.|+ .+|.+.-.-+ -+.|+-.++++.+|..++..|.
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 888 6777765333 3789999999999999987654
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.4e-10 Score=70.21 Aligned_cols=63 Identities=25% Similarity=0.551 Sum_probs=52.8
Q ss_pred eEEEEeeCCCCCCCCCCeEEEeccCcccc-ccCCCcEeecCCC-CCCCCcCCHHHHHHHHHHhhc
Q 033535 52 TFKLTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQ-NQWSPIYDVAAILTSIQVFDS 114 (117)
Q Consensus 52 ~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn-v~~~G~icl~~l~-~~W~p~~~i~~vl~~i~~ll~ 114 (117)
...+.+.|++|||+.||.++...|.-.-. |-.+|+||+.+|. +.|+.+++++.+++++.+.+.
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlV 76 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLV 76 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhh
Confidence 45678889999999999999887764433 4479999999996 679999999999999988764
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.95 E-value=2.2e-09 Score=70.84 Aligned_cols=68 Identities=29% Similarity=0.573 Sum_probs=61.2
Q ss_pred CCCeEEEEeeCCCCCCCCCCeEEEeccC---ccccccCCCcEee---cCCCCCCCCcCCHHHHHHHHHHhhccC
Q 033535 49 DGGTFKLTLQFTEDYPNKPPTVRFVSRM---FHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
.|+.+.+.|.+|++||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-.+.++|...+.+|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~ 107 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDG 107 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999998654 6799999999999 777888999999999999999888753
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.77 E-value=4.4e-08 Score=63.73 Aligned_cols=87 Identities=20% Similarity=0.415 Sum_probs=56.7
Q ss_pred CCCcceEEEEEeCCCCCCCCCCeE--EEEeeCCCCCCCCCCeEEEeccC-----ccccccCCCcEeecCCCCCCCC-cCC
Q 033535 30 DNSIMLWNAVIFGPDDTPWDGGTF--KLTLQFTEDYPNKPPTVRFVSRM-----FHPNIYADGSICLDILQNQWSP-IYD 101 (117)
Q Consensus 30 ~~~~~~w~~~i~gp~~t~yeg~~~--~~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~ 101 (117)
++...+--+.+.|--.=.|+|..| .+.|-+|.+||.+||.+...-.. -+.+|+.+|+|.+..| ++|++ ..+
T Consensus 25 ~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~ 103 (121)
T PF05743_consen 25 NDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSN 103 (121)
T ss_dssp TTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-
T ss_pred CCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCC
Confidence 333333333444422235888887 46777999999999999886321 2349999999998888 56877 778
Q ss_pred HHHHHHHHHHhhccCC
Q 033535 102 VAAILTSIQVFDSFLP 117 (117)
Q Consensus 102 i~~vl~~i~~ll~~~p 117 (117)
+.+++..+++.|.++|
T Consensus 104 L~~lv~~l~~~F~~~p 119 (121)
T PF05743_consen 104 LVDLVQELQAVFSEEP 119 (121)
T ss_dssp HHHHHHHHHHCCCHS-
T ss_pred HHHHHHHHHHHHhHcC
Confidence 9999999999998876
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.35 E-value=1.4e-07 Score=62.28 Aligned_cols=95 Identities=22% Similarity=0.437 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCeEEEecc
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~----------~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
..||..|++.|-+. +....++-..|.-.=..++||-|.|. .|.+++.+|..||..||.|..-.-
T Consensus 26 ~~RLKEEy~aLI~Y------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIKY------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 57999999997532 22222233344333334556655554 366788899999999999977531
Q ss_pred C-ccccccCCCcEeecCCCCC-C---CCcCCHHHHH
Q 033535 76 M-FHPNIYADGSICLDILQNQ-W---SPIYDVAAIL 106 (117)
Q Consensus 76 i-~Hpnv~~~G~icl~~l~~~-W---~p~~~i~~vl 106 (117)
- -..-.+.+|+||++....- | .|.++|.+.+
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 0 0112345899999887532 5 6788888775
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=8.7e-05 Score=55.50 Aligned_cols=77 Identities=22% Similarity=0.464 Sum_probs=59.8
Q ss_pred EeCCCCCCCCCCeEE--EEeeCCCCCCCCCCeEEEe-cc----CccccccCCCcEeecCCCCCCCC-cCCHHHHHHHHHH
Q 033535 40 IFGPDDTPWDGGTFK--LTLQFTEDYPNKPPTVRFV-SR----MFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQV 111 (117)
Q Consensus 40 i~gp~~t~yeg~~~~--~~i~fp~~YP~~pP~v~f~-t~----i~Hpnv~~~G~icl~~l~~~W~p-~~~i~~vl~~i~~ 111 (117)
+.|-.-.+|.|.+|. +.|-+.+.||..||.+... |. -.|-||+.+|.|.|..|. +|.| +.++..++.-+.+
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a 133 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIA 133 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHH
Confidence 334444578887766 5556899999999998665 21 138999999999999994 6866 5689999999999
Q ss_pred hhccCC
Q 033535 112 FDSFLP 117 (117)
Q Consensus 112 ll~~~p 117 (117)
.|.++|
T Consensus 134 ~f~~~p 139 (365)
T KOG2391|consen 134 AFSEDP 139 (365)
T ss_pred HhcCCC
Confidence 998876
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00012 Score=47.93 Aligned_cols=95 Identities=20% Similarity=0.411 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCe----------EEEEeeCCCCCCCCCCeEEEecc
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGT----------FKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~----------~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
.+||..|++.|-+. ++-..++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.+..-.-
T Consensus 29 vqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 57999999998532 333444455565555557788887753 66777889999999999866421
Q ss_pred C-ccccccCCCcEeecCCCC-CC---CCcCCHHHHH
Q 033535 76 M-FHPNIYADGSICLDILQN-QW---SPIYDVAAIL 106 (117)
Q Consensus 76 i-~Hpnv~~~G~icl~~l~~-~W---~p~~~i~~vl 106 (117)
- -.--.+.+|+||+.-... -| .|.+++.+.+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 0 001124589999865533 36 5666666553
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.07 E-value=0.0027 Score=39.73 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeC--CCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccC
Q 033535 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM 76 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~g--p~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i 76 (117)
.+.+.|+..|+.--+... ......+...+.+.+.. ...+.-....+++.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 466778888876555444 22334444556666632 2233344568999999999999999999887654
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.00 E-value=0.021 Score=37.20 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=61.3
Q ss_pred CeEEecCCCCcceEEEEEeC--CCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcc-------cccc-----CCCcEe
Q 033535 23 GISGAPQDNSIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH-------PNIY-----ADGSIC 88 (117)
Q Consensus 23 ~i~~~~~~~~~~~w~~~i~g--p~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~H-------pnv~-----~~G~ic 88 (117)
|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|++||..+|...+..+-.. ||-. ..|+.=
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~w 91 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTW 91 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeee
Confidence 6666665555566655 555 335579999999999999999999998877765322 2110 122211
Q ss_pred --ecCCCCCCCCcC-CHHHHHHHHHHhhcc
Q 033535 89 --LDILQNQWSPIY-DVAAILTSIQVFDSF 115 (117)
Q Consensus 89 --l~~l~~~W~p~~-~i~~vl~~i~~ll~~ 115 (117)
.+.....|+|.. +|.+.|.-|...|..
T Consensus 92 QrWSRH~~~W~P~~D~l~T~l~~v~~~L~~ 121 (122)
T PF14462_consen 92 QRWSRHNNPWRPGVDDLWTHLARVEHALAK 121 (122)
T ss_pred eeecCCCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 122334599987 699999888887754
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.90 E-value=0.02 Score=35.41 Aligned_cols=26 Identities=19% Similarity=0.586 Sum_probs=22.6
Q ss_pred CCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 50 GGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 50 g~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
...+.+.+.+|++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 45689999999999999999988764
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.31 E-value=0.056 Score=36.85 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=48.6
Q ss_pred EEEeeCCCCCCCCCCeEEEeccCc---cccccCC-----CcEeecCCC-CCCCCcCCHHHHHHHHHHhhcc
Q 033535 54 KLTLQFTEDYPNKPPTVRFVSRMF---HPNIYAD-----GSICLDILQ-NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 54 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.+.|.|+.+||..+|.|.+..+.| +||++.. ..+|+---. .+|.+..+++.+|..|...|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 357899999999999887775433 5777655 789985543 4699999999999999887753
No 35
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.28 E-value=0.4 Score=34.05 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCe-EEecCCCCcceEEEEEeCCCCC--CCCCCeEEEEeeCCCCCCCCCCeEEEe
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGI-SGAPQDNSIMLWNAVIFGPDDT--PWDGGTFKLTLQFTEDYPNKPPTVRFV 73 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i-~~~~~~~~~~~w~~~i~gp~~t--~yeg~~~~~~i~fp~~YP~~pP~v~f~ 73 (117)
||.. .-...|+..|...-+..+ .+. +.+...+.+.|.--.|. -|.| .+.+.+.++.+||.++|-+.+.
T Consensus 1 Ms~~--EeQe~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 1 MSQY--EEQEEELEALESIYPDEFKHIN--SEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred CCcH--HHHHHHHHHHHHhccchhhhhh--ccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 5543 335567777776554444 232 22333356666522222 2223 7889999999999999999443
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=93.20 E-value=0.17 Score=37.68 Aligned_cols=86 Identities=17% Similarity=0.325 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCCC
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 85 (117)
.++|.+|+.++..+.. +.+. .++++....+.+.. ++....+++.++.+||.++|.+..--++
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~--------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI--------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS---------
T ss_pred HHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc---------
Confidence 4678888888875543 2222 35677777777752 1257889999999999999974222211
Q ss_pred cEeecCCCCCCCC-cCCHHHHHHHHHHhhc
Q 033535 86 SICLDILQNQWSP-IYDVAAILTSIQVFDS 114 (117)
Q Consensus 86 ~icl~~l~~~W~p-~~~i~~vl~~i~~ll~ 114 (117)
.+...|.+ ..++.+++.+.+..+.
T Consensus 163 -----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 -----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred -----chhhhhcccccCHHHHHHHHHHHHH
Confidence 11235988 6789999888877764
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.16 E-value=0.82 Score=38.35 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCC-CCeEEEecc
Q 033535 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK-PPTVRFVSR 75 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~-pP~v~f~t~ 75 (117)
+-|.+|+.-|-. +.+++.++..+-.-..-.+.+.+|--..=.-...++.|.||.+||.+ +|.+.|..+
T Consensus 423 QnLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 345666665532 33455555444445667788887664331123457899999999997 789998753
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=82.91 E-value=9 Score=29.17 Aligned_cols=67 Identities=22% Similarity=0.462 Sum_probs=46.8
Q ss_pred cceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEe-ccCccccccCCCcEeecCCCCCCCCcC--CHHHHHHHH
Q 033535 33 IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIYADGSICLDILQNQWSPIY--DVAAILTSI 109 (117)
Q Consensus 33 ~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~-t~i~Hpnv~~~G~icl~~l~~~W~p~~--~i~~vl~~i 109 (117)
...+.+.| ||.|...+-+|.|...||..||.+.|- ..-|+|-... + ..| .+|++.- .+..++..+
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~---l--~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK---L--PSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh---c--chh-hcCCCCCchHHHHHHHHH
Confidence 44666666 799999999999999999999999997 4457774321 1 111 4698754 455555555
Q ss_pred HH
Q 033535 110 QV 111 (117)
Q Consensus 110 ~~ 111 (117)
+.
T Consensus 121 ~~ 122 (333)
T PF06113_consen 121 RQ 122 (333)
T ss_pred HH
Confidence 44
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=80.74 E-value=1.8 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhCC
Q 033535 4 PARKRLMRDFKRLQQDP 20 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~ 20 (117)
.-.+||++|+++|+...
T Consensus 19 eeNrRL~ke~~eLralk 35 (44)
T smart00340 19 EENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 35799999999998654
No 40
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=76.85 E-value=2.7 Score=23.86 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=16.9
Q ss_pred CCCCcCCHHHHHHHHHHhhccCC
Q 033535 95 QWSPIYDVAAILTSIQVFDSFLP 117 (117)
Q Consensus 95 ~W~p~~~i~~vl~~i~~ll~~~p 117 (117)
+|.|.++|++++.........||
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~np 59 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKKNP 59 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHHST
T ss_pred CCCcCCCHHHHHHHHHHHHHHCc
Confidence 59999999999999888877776
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=71.36 E-value=7.8 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.671 Sum_probs=22.6
Q ss_pred CCCeEEEEeeCCCCCC-CCCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYP-NKPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP-~~pP~v~f~ 73 (117)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3589999999999999 999999887
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=66.72 E-value=11 Score=26.35 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCCeEEEEeeCCCCCCCCCCeEEEec
Q 033535 49 DGGTFKLTLQFTEDYPNKPPTVRFVS 74 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP~~pP~v~f~t 74 (117)
+.|.|.|.=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 45889999999999999999999873
No 43
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=66.38 E-value=9.4 Score=26.16 Aligned_cols=17 Identities=35% Similarity=0.925 Sum_probs=13.2
Q ss_pred cCcc---ccccCCCcEeecC
Q 033535 75 RMFH---PNIYADGSICLDI 91 (117)
Q Consensus 75 ~i~H---pnv~~~G~icl~~ 91 (117)
+.|| +||+.+|.||+-.
T Consensus 91 ~Ly~aPf~NV~~~g~vC~G~ 110 (175)
T PF14460_consen 91 PLYHAPFFNVYSNGSVCWGN 110 (175)
T ss_pred eeEeCCccccCCCCcEeeCC
Confidence 4555 5999999999855
No 44
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=65.47 E-value=12 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=21.7
Q ss_pred cCcc---ccccCCCcEeecCCCCCCCCcC-CHHHHHHHHHHhh
Q 033535 75 RMFH---PNIYADGSICLDILQNQWSPIY-DVAAILTSIQVFD 113 (117)
Q Consensus 75 ~i~H---pnv~~~G~icl~~l~~~W~p~~-~i~~vl~~i~~ll 113 (117)
+.|| .||+++|+||+-... .|.- ++.+ +.+....|
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~F 170 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAF 170 (228)
T ss_pred eeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHH
Confidence 3455 489999999986553 4543 4444 55555444
No 45
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.08 E-value=3.2 Score=29.11 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.1
Q ss_pred CCcEeecCCCCCCCCcCCHHHHHHHHHHhh
Q 033535 84 DGSICLDILQNQWSPIYDVAAILTSIQVFD 113 (117)
Q Consensus 84 ~G~icl~~l~~~W~p~~~i~~vl~~i~~ll 113 (117)
.+..|++++...|+|.+|.+..+.-++.+.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 567999999999999999998877666554
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=64.28 E-value=29 Score=20.91 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=28.1
Q ss_pred ceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCc
Q 033535 34 MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (117)
Q Consensus 34 ~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~ 77 (117)
.+|.+.+.|+.+.--..-.=++.+.+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988764455667788889888876 6655555544
No 47
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=61.40 E-value=16 Score=24.73 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCeEEEEeeCCCCCC-----CCCCeEEEec
Q 033535 50 GGTFKLTLQFTEDYP-----NKPPTVRFVS 74 (117)
Q Consensus 50 g~~~~~~i~fp~~YP-----~~pP~v~f~t 74 (117)
.|.|.|.=.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998873
No 48
>PRK11700 hypothetical protein; Provisional
Probab=55.07 E-value=62 Score=22.68 Aligned_cols=71 Identities=20% Similarity=0.380 Sum_probs=45.1
Q ss_pred CcceEEEEE---eCCCCCCC-CCCeEEEEeeCCC--------------CCCCCCCeEEEec--------cCcccccc-CC
Q 033535 32 SIMLWNAVI---FGPDDTPW-DGGTFKLTLQFTE--------------DYPNKPPTVRFVS--------RMFHPNIY-AD 84 (117)
Q Consensus 32 ~~~~w~~~i---~gp~~t~y-eg~~~~~~i~fp~--------------~YP~~pP~v~f~t--------~i~Hpnv~-~~ 84 (117)
....|.+.+ -=|.+.-| .-|+=|+++++|. +.+..++-|++.. +.-+|-|. ++
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 445676544 22545555 4578889999873 3455566666553 35667776 79
Q ss_pred CcEeecCCCCCCCCcCCHHHHHHH
Q 033535 85 GSICLDILQNQWSPIYDVAAILTS 108 (117)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~vl~~ 108 (117)
|.+|+.+.. +++++|+.+
T Consensus 167 ~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred CCEEEEEcC------ccHHHHHHh
Confidence 999998763 566666543
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=54.59 E-value=18 Score=27.38 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.3
Q ss_pred CeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 51 ~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
-.+.+.+..++.||...|.|....|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4678899999999999999999875
No 50
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=52.99 E-value=21 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.3
Q ss_pred CeEEEEeeCCCCCCCCCCeEEEec
Q 033535 51 GTFKLTLQFTEDYPNKPPTVRFVS 74 (117)
Q Consensus 51 ~~~~~~i~fp~~YP~~pP~v~f~t 74 (117)
-.|-+.|.+|..||...|.++|++
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 358888999999999999999986
No 51
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=49.64 E-value=30 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCCeEEEEeeCCCCCCC-----CCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYPN-----KPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP~-----~pP~v~f~ 73 (117)
+.|.|.|.=..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34789999999999998 88988876
No 52
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=49.48 E-value=14 Score=20.96 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhh
Q 033535 5 ARKRLMRDFKRLQQ 18 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~ 18 (117)
-.+||++|++++.-
T Consensus 35 Dr~rL~kEL~d~D~ 48 (59)
T PF12065_consen 35 DRQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHHccc
Confidence 35799999999853
No 53
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=47.03 E-value=48 Score=24.36 Aligned_cols=44 Identities=30% Similarity=0.563 Sum_probs=28.5
Q ss_pred eEEEEEeCCCCCC-CCC---CeEEEEeeCC-----CCCCCCCCeEEEeccCccc
Q 033535 35 LWNAVIFGPDDTP-WDG---GTFKLTLQFT-----EDYPNKPPTVRFVSRMFHP 79 (117)
Q Consensus 35 ~w~~~i~gp~~t~-yeg---~~~~~~i~fp-----~~YP~~pP~v~f~t~i~Hp 79 (117)
-|.+... ..||- .+| ..|+.+++++ .|-||+||+|..+++-|..
T Consensus 104 PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 104 PWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 4666555 23332 223 3466777765 6899999999999876643
No 54
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=46.53 E-value=37 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.4
Q ss_pred CCeEEEEeeCCCCCCC-----CCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYPN-----KPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP~-----~pP~v~f~ 73 (117)
.|.|.|.-.+|--||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999995 78888776
No 55
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=44.15 E-value=44 Score=22.04 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=21.1
Q ss_pred CCCCcceEEEEEeCCCCCCCC-CCeEEEEeeC
Q 033535 29 QDNSIMLWNAVIFGPDDTPWD-GGTFKLTLQF 59 (117)
Q Consensus 29 ~~~~~~~w~~~i~gp~~t~ye-g~~~~~~i~f 59 (117)
...|...|.|++.|++||+.. ..+|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 456677789999999998764 3444444444
No 56
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=40.08 E-value=88 Score=19.17 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=21.1
Q ss_pred CCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 48 WDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 48 yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
-||..+.|...-|..|| .|.|...+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46788888888899999 588888754
No 57
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.44 E-value=67 Score=22.52 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCC
Q 033535 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDT 46 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t 46 (117)
..+|+++|++++.++--..++.-|.-+..-.+.+.+.--+++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence 578999999999999888888777666667777777644443
No 58
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=39.25 E-value=22 Score=24.35 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=42.3
Q ss_pred HHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEe---ccCccccccCCC
Q 033535 9 LMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV---SRMFHPNIYADG 85 (117)
Q Consensus 9 l~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~---t~i~Hpnv~~~G 85 (117)
+..++++....-..|++|....++ +.+ .|-+-.--..++ .+||.|.+. +..-|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 455788888888888887542211 111 121111111121 368998876 346788888999
Q ss_pred cEeecCCCC
Q 033535 86 SICLDILQN 94 (117)
Q Consensus 86 ~icl~~l~~ 94 (117)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999964
No 59
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.11 E-value=1.5e+02 Score=23.48 Aligned_cols=20 Identities=30% Similarity=0.778 Sum_probs=14.2
Q ss_pred EEEEeeCCCCCCCC-CCeEEE
Q 033535 53 FKLTLQFTEDYPNK-PPTVRF 72 (117)
Q Consensus 53 ~~~~i~fp~~YP~~-pP~v~f 72 (117)
..+++.+|++||.. ||++..
T Consensus 76 ivlkf~LP~~YPs~spP~f~l 96 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKFEL 96 (445)
T ss_pred eeeeeecCCccccCCCCceee
Confidence 44677899999987 555443
No 60
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=37.01 E-value=20 Score=23.90 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=24.4
Q ss_pred CCCCeEEEe---ccCccccccCCCcEeecCCCC
Q 033535 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQN 94 (117)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~ 94 (117)
.+||.|.+. ...-|+.|..+|.+|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 479998876 346788889999999999964
No 61
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=35.35 E-value=71 Score=23.63 Aligned_cols=30 Identities=13% Similarity=0.470 Sum_probs=26.4
Q ss_pred CCCCCCCeEEEEeeCCCCCCCCC--CeEEEec
Q 033535 45 DTPWDGGTFKLTLQFTEDYPNKP--PTVRFVS 74 (117)
Q Consensus 45 ~t~yeg~~~~~~i~fp~~YP~~p--P~v~f~t 74 (117)
.+.+.|..|++.+..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 34678999999999999999988 9999985
No 62
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=34.63 E-value=1.3e+02 Score=19.37 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCC
Q 033535 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTED 62 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~ 62 (117)
+...+++++.++...-|+.+...-++ ....+.+.-+.|.|.++....+.+.-|.+
T Consensus 43 ~~y~~~i~~~~~a~~lg~~~~~~~~~-~~~~i~~~d~~g~~~~~~~~~l~l~rp~~ 97 (146)
T PF05751_consen 43 LAYNQDIDRERAAEALGWKAELTIDD-NSLTIRLTDPNGAPVSGAKLTLSLYRPTD 97 (146)
T ss_pred hhhhhhhHHHHHHHhcCccceeeecC-CeEEEEEEcCCCCcCcCceEEEEEECCCC
Confidence 44566666666666666665543222 33445554477888888888888877753
No 63
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=33.92 E-value=70 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.8
Q ss_pred CCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
.|.|.|.=..|.-|| ..||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 478999999999997 678999887
No 64
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=33.62 E-value=21 Score=22.80 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=15.3
Q ss_pred CCCcEeecCCCCCCCCcCCH
Q 033535 83 ADGSICLDILQNQWSPIYDV 102 (117)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i 102 (117)
..|..|.=.+...|+|.+++
T Consensus 49 GGg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CCceEEEEEcCCCCCCCCEE
Confidence 45666877788899998764
No 65
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=32.59 E-value=27 Score=23.30 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=24.9
Q ss_pred CCCCCeEEEe---ccCccccccCCCcEeecCCCC
Q 033535 64 PNKPPTVRFV---SRMFHPNIYADGSICLDILQN 94 (117)
Q Consensus 64 P~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~ 94 (117)
-.+||.+.+. +..-|+.+..+|.+++++|.+
T Consensus 40 S~~PP~v~v~l~~~s~t~~~i~~s~~F~VnvL~~ 73 (156)
T TIGR03615 40 TDTPPTLLVCLNRSASAYPAFKQNGTLCVNTLAA 73 (156)
T ss_pred cCCCCEEEEEeCCCcchhHHHHhCCeEEEEECcH
Confidence 4479999887 446678889999999999964
No 66
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=32.38 E-value=48 Score=27.26 Aligned_cols=30 Identities=27% Similarity=0.567 Sum_probs=24.2
Q ss_pred CCCCCCeEEEEeeCCCCCCCC---CCeEEEeccC
Q 033535 46 TPWDGGTFKLTLQFTEDYPNK---PPTVRFVSRM 76 (117)
Q Consensus 46 t~yeg~~~~~~i~fp~~YP~~---pP~v~f~t~i 76 (117)
+||.=|.|-+ +.+|++||+. -|.++|+|+.
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecch
Confidence 5677788885 6678889986 7999999873
No 67
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=31.99 E-value=79 Score=23.51 Aligned_cols=25 Identities=20% Similarity=0.596 Sum_probs=21.3
Q ss_pred CCCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
+.|.|.|.=..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3588999999999998 479999886
No 68
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=31.82 E-value=15 Score=31.22 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=0.0
Q ss_pred eEEEEeeCCCCCCCCCCeEEEec
Q 033535 52 TFKLTLQFTEDYPNKPPTVRFVS 74 (117)
Q Consensus 52 ~~~~~i~fp~~YP~~pP~v~f~t 74 (117)
+=-+.|.+|.|||..+|.+.+.+
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp -----------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccH
Confidence 33477889999999999987754
No 69
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=31.59 E-value=1.5e+02 Score=21.20 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=9.7
Q ss_pred CeEEEec--cCcccccc
Q 033535 68 PTVRFVS--RMFHPNIY 82 (117)
Q Consensus 68 P~v~f~t--~i~Hpnv~ 82 (117)
|.+.|-| ++.|-..+
T Consensus 84 p~LsFdTyN~~iH~~s~ 100 (235)
T PF14135_consen 84 PVLSFDTYNEYIHYFSD 100 (235)
T ss_pred eEEEEEeCCceEEEccC
Confidence 7777775 36675554
No 70
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.11 E-value=85 Score=22.52 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=20.7
Q ss_pred CCeEEEEeeCCCCCCC-------CCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYPN-------KPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP~-------~pP~v~f~ 73 (117)
.|.|.|.=..|.-||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999975 79999885
No 71
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=31.06 E-value=39 Score=22.87 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=23.9
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. .+--++|+..+|..+++++.++
T Consensus 45 ~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~~ 77 (176)
T COG1853 45 EPPLVLVCVNKSSDTWPNIEETGEFVVNVLSED 77 (176)
T ss_pred CCCEEEEEecCCcchhhhhhhcCEEEEEeCCHH
Confidence 67888776 3456789999999999998654
No 72
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.55 E-value=65 Score=20.87 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhhhCCCC
Q 033535 3 TPARKRLMRDFKRLQQDPPA 22 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~ 22 (117)
.....||++|+++..-++..
T Consensus 26 ~krr~rLl~Ef~rR~GDpn~ 45 (118)
T PF09929_consen 26 KKRRSRLLREFQRRSGDPNV 45 (118)
T ss_pred HHHHHHHHHHHHHhcCCCCC
Confidence 45778999999999887754
No 73
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=30.08 E-value=56 Score=17.01 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhhhC
Q 033535 3 TPARKRLMRDFKRLQQD 19 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~ 19 (117)
+.+.|.|.+|+-.+.++
T Consensus 26 ~~alkELIeELvNITqn 42 (43)
T PF03487_consen 26 STALKELIEELVNITQN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhhccC
Confidence 46889999999888765
No 74
>PHA03200 uracil DNA glycosylase; Provisional
Probab=30.02 E-value=60 Score=23.90 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=31.2
Q ss_pred cceEEEEEeCCCCCCCCCCeEE-EEeeCCCCCCCCCCeEEEe-----------ccCcccccc---CCCcEeecCC
Q 033535 33 IMLWNAVIFGPDDTPWDGGTFK-LTLQFTEDYPNKPPTVRFV-----------SRMFHPNIY---ADGSICLDIL 92 (117)
Q Consensus 33 ~~~w~~~i~gp~~t~yeg~~~~-~~i~fp~~YP~~pP~v~f~-----------t~i~Hpnv~---~~G~icl~~l 92 (117)
..+.+|+|.|-+ ||.||.-+ +-+..+.+++. ||..+=+ ...-|.+.. ..|.+.|+..
T Consensus 82 ~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~NIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtv 153 (255)
T PHA03200 82 PEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLKNVFRELERTVPNFSRPDSGCLDSWCRQGVLLLNTV 153 (255)
T ss_pred hhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHHHHHHHHHhhcCCCCCCCCCChhhHHhCCEEEEeee
Confidence 345789999855 78764322 33344566653 6654321 112233442 5788887654
No 75
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=29.98 E-value=92 Score=23.24 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.3
Q ss_pred CCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
.|.|.|.=..|..|| ..||.|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 588999999998887 578998886
No 76
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=29.66 E-value=91 Score=23.27 Aligned_cols=24 Identities=21% Similarity=0.628 Sum_probs=20.5
Q ss_pred CCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
.|.|.|.=..|.-|| ..||.|.|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999996 578988886
No 77
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=29.55 E-value=20 Score=17.65 Aligned_cols=15 Identities=27% Similarity=0.899 Sum_probs=8.9
Q ss_pred CccccccCCCc-Eeec
Q 033535 76 MFHPNIYADGS-ICLD 90 (117)
Q Consensus 76 i~Hpnv~~~G~-icl~ 90 (117)
.|||.+..+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999997776 5543
No 78
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=29.55 E-value=93 Score=22.31 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=20.8
Q ss_pred CCeEEEEeeCCCCCCC-------CCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYPN-------KPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP~-------~pP~v~f~ 73 (117)
.|.|.|.=..|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999976 89999885
No 79
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.21 E-value=1.1e+02 Score=21.79 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=19.8
Q ss_pred CcceEEEEEeCCCCCCCCC--CeEEEEeeCCCCCCCCCCeE
Q 033535 32 SIMLWNAVIFGPDDTPWDG--GTFKLTLQFTEDYPNKPPTV 70 (117)
Q Consensus 32 ~~~~w~~~i~gp~~t~yeg--~~~~~~i~fp~~YP~~pP~v 70 (117)
.+.+.+|+|.|-+ ||.+ ---=+-+..+++.+. ||..
T Consensus 49 p~~~vKVVIlGQD--PYh~~gqA~GLaFSv~~~~~~-PpSL 86 (212)
T TIGR00628 49 PPEDVKVVILGQD--PYHGPGQAHGLAFSVKPGVPI-PPSL 86 (212)
T ss_pred ChhheEEEEecCC--CCCCCCCcceeeeECCCCCCC-CchH
Confidence 4456899999855 7755 122223334455543 5554
No 80
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=27.76 E-value=77 Score=21.66 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhCC----CCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 7 KRLMRDFKRLQQDP----PAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~----~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
+..-+|+..++... ..|+.+. +.+.-...+.+..|+-.|- --...+++.| .||-..||.|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 44566777765443 2366653 3333334445544444442 2235677778 679999999999976
No 81
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=27.26 E-value=1.8e+02 Score=23.13 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.2
Q ss_pred CeEEEEeeCCCCCCCC
Q 033535 51 GTFKLTLQFTEDYPNK 66 (117)
Q Consensus 51 ~~~~~~i~fp~~YP~~ 66 (117)
....+.+.||.+|+..
T Consensus 209 e~k~i~vtFP~dy~a~ 224 (441)
T COG0544 209 EEKDIKVTFPEDYHAE 224 (441)
T ss_pred CeeEEEEEcccccchh
Confidence 3567889999999876
No 82
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=25.90 E-value=1.2e+02 Score=22.09 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.5
Q ss_pred CCCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
+.|.|.|.=..|.-|| ..||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 3588999999999997 468888886
No 83
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=25.78 E-value=68 Score=20.23 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHhhccCC
Q 033535 100 YDVAAILTSIQVFDSFLP 117 (117)
Q Consensus 100 ~~i~~vl~~i~~ll~~~p 117 (117)
.+++++|..++.+|..+|
T Consensus 94 ~~v~eal~~l~~~~~~~~ 111 (119)
T TIGR02663 94 ESISELLERLQKMLKGNP 111 (119)
T ss_pred ccHHHHHHHHHHHHcCCC
Confidence 479999999999998876
No 84
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=25.60 E-value=1.3e+02 Score=22.93 Aligned_cols=38 Identities=26% Similarity=0.608 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCC-CCCCCeEEEEee---CCCCCCCCCCeEEEe
Q 033535 35 LWNAVIFGPDDT-PWDGGTFKLTLQ---FTEDYPNKPPTVRFV 73 (117)
Q Consensus 35 ~w~~~i~gp~~t-~yeg~~~~~~i~---fp~~YP~~pP~v~f~ 73 (117)
+|+..+.|-.|+ -|++|.+++++. |-. -=...|+|||-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn-~~qR~PriRfG 239 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKN-LYQRGPRIRFG 239 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccc-ccccCCceEee
Confidence 578889997665 788999988776 322 23346788885
No 85
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.39 E-value=68 Score=17.83 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhhC
Q 033535 4 PARKRLMRDFKRLQQD 19 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~ 19 (117)
...+|+++|+++++++
T Consensus 48 ~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777788777765
No 86
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=24.66 E-value=1.7e+02 Score=17.66 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=29.5
Q ss_pred EeeCCCCCCCCCCeEEEecc-----Ccccccc------CCCcEeecCC-CC--CCCCcCCHHHHHHHHH
Q 033535 56 TLQFTEDYPNKPPTVRFVSR-----MFHPNIY------ADGSICLDIL-QN--QWSPIYDVAAILTSIQ 110 (117)
Q Consensus 56 ~i~fp~~YP~~pP~v~f~t~-----i~Hpnv~------~~G~icl~~l-~~--~W~p~~~i~~vl~~i~ 110 (117)
-+.||+.||-+--.+-..+. .-|.|+- .+...|..-. .+ .|++.-=+.++..-++
T Consensus 6 ImIlPdKYPCSIsSiLI~s~~~v~~~n~kn~L~~nqn~~~nh~ys~N~~fdeIhWTsq~Lid~~q~fLq 74 (89)
T PF07380_consen 6 IMILPDKYPCSISSILITSECRVTMYNHKNTLYFNQNNYNNHMYSPNHMFDEIHWTSQDLIDATQNFLQ 74 (89)
T ss_pred EEEcCCCCCceeeEEEEeccceeEEEeccchhhhhccCCCccccccCccchhhccchHHHHHHHHHHHH
Confidence 46799999998766655432 2355541 2344554222 12 2877554444444333
No 87
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=24.51 E-value=39 Score=22.54 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=13.0
Q ss_pred EEEEeeCCCCCCCCCCe
Q 033535 53 FKLTLQFTEDYPNKPPT 69 (117)
Q Consensus 53 ~~~~i~fp~~YP~~pP~ 69 (117)
|+-+-.+|.|||..+|.
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 44555699999999874
No 88
>PRK11702 hypothetical protein; Provisional
Probab=24.05 E-value=53 Score=20.96 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=10.1
Q ss_pred CChHHHHHHHHHH
Q 033535 1 MSTPARKRLMRDF 13 (117)
Q Consensus 1 Ms~~~~~Rl~~E~ 13 (117)
|+....|||.|-+
T Consensus 1 ma~~RsRRlRKKL 13 (108)
T PRK11702 1 MAKNRSRRLRKKM 13 (108)
T ss_pred CccchhHHHHhhh
Confidence 7777889998844
No 89
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=22.50 E-value=2.5e+02 Score=18.77 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=35.3
Q ss_pred CeEEecCCCCcceEEEEEeCCC-CCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 23 GISGAPQDNSIMLWNAVIFGPD-DTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 23 ~i~~~~~~~~~~~w~~~i~gp~-~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
|..+..-+.|..++ ..-.|. -+-|.|-.-.+.+.=...||--+|++.|.|+
T Consensus 86 g~iLA~ye~n~rDf--LfP~p~~~~~~~g~~revLM~~t~~FpGIaPklEfST~ 137 (140)
T PF14909_consen 86 GEILAYYEENTRDF--LFPEPKLTPSYPGVDREVLMKRTSGFPGIAPKLEFSTK 137 (140)
T ss_pred CcEEEEEeccccce--EcCCCCCCCCCCCCCEEEEeeccCCCCCCCceEEEEEE
Confidence 44444445555443 333333 3457788889999999999999999999875
No 90
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=22.03 E-value=1e+02 Score=18.72 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHhhh
Q 033535 3 TPARKRLMRDFKRLQQ 18 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~ 18 (117)
+.+.+||.||.....+
T Consensus 6 t~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999876654
No 91
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=21.55 E-value=1e+02 Score=20.40 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHhhhC
Q 033535 1 MSTPARKRLMRDFKRLQQD 19 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~ 19 (117)
|+....+||++|++.|+..
T Consensus 2 ~T~~g~~~L~~el~~L~~~ 20 (151)
T TIGR01462 2 LTQEGYEKLKEELEYLKTV 20 (151)
T ss_pred cCHHHHHHHHHHHHHHHhc
Confidence 5667788999999998753
No 92
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.13 E-value=1.7e+02 Score=21.52 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=19.9
Q ss_pred CCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
.|.|.|.=..|.-|| ..||.|.|.
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 478999999998886 578988886
No 93
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.04 E-value=1.7e+02 Score=16.37 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=15.8
Q ss_pred CCh-HHHHHHHHHHHHhhhCCCCCe
Q 033535 1 MST-PARKRLMRDFKRLQQDPPAGI 24 (117)
Q Consensus 1 Ms~-~~~~Rl~~E~~~l~~~~~~~i 24 (117)
||| -|..-+.+|+++..++-+.+.
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~ 52 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIV 52 (60)
T ss_pred ccchhHHHHHHHHHHHHhccccccc
Confidence 454 367777888888877655443
No 94
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=20.76 E-value=2.7e+02 Score=18.55 Aligned_cols=31 Identities=6% Similarity=-0.074 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhCCCCCeEEec-CCCCcceEEE
Q 033535 7 KRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNA 38 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~-~~~~~~~w~~ 38 (117)
..+++|++++.+..+. .++.. .-||..++..
T Consensus 62 ~~Vl~Ei~~CrkayP~-~yIRl~gFDn~rq~Q~ 93 (138)
T CHL00130 62 AAVMFEINECRKQKPN-GYIKVNAFDASRGVES 93 (138)
T ss_pred HHHHHHHHHHHHHCCC-cEEEEEEeeCCCcEEE
Confidence 5688999999887654 34443 3366677766
No 95
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=20.39 E-value=1.5e+02 Score=16.53 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=11.2
Q ss_pred EEEEeeCCCCCCCCCCeEEEe
Q 033535 53 FKLTLQFTEDYPNKPPTVRFV 73 (117)
Q Consensus 53 ~~~~i~fp~~YP~~pP~v~f~ 73 (117)
+...|.|+..|.. ||+|.+-
T Consensus 3 ~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 3 YSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEE-SS--SS---EEEEE
T ss_pred eEEEeEcChhcCC-CCEEEEE
Confidence 5678999988875 8888665
No 96
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=20.18 E-value=1.1e+02 Score=20.60 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=14.0
Q ss_pred CChHHHHHHHHHHHHhhh
Q 033535 1 MSTPARKRLMRDFKRLQQ 18 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~ 18 (117)
|+.....+|++||++|..
T Consensus 8 lT~eg~~~L~~EL~~L~~ 25 (158)
T PRK05892 8 LAPAARDHLEAELARLRA 25 (158)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 456677888888888875
Done!