Query 033535
Match_columns 117
No_of_seqs 143 out of 1078
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 100.0 2.7E-46 9.1E-51 254.9 14.1 115 1-115 1-115 (169)
2 2fo3_A Ubiquitin-conjugating e 100.0 4.3E-46 1.5E-50 242.9 13.8 115 1-116 4-119 (125)
3 2aak_A UBC1, ubiquitin conjuga 100.0 6.5E-46 2.2E-50 249.2 14.2 115 1-115 1-115 (152)
4 2ucz_A UBC7, ubiquitin conjuga 100.0 1.8E-45 6.2E-50 250.0 15.3 115 1-115 1-129 (165)
5 2a7l_A Hypothetical ubiquitin- 100.0 5.7E-46 1.9E-50 245.3 11.7 113 1-114 20-136 (136)
6 2h2y_A Ubiquitin-conjugating e 100.0 2.3E-45 7.8E-50 242.6 14.6 113 4-116 20-133 (136)
7 1zdn_A Ubiquitin-conjugating e 100.0 2.2E-45 7.4E-50 248.1 14.0 115 1-115 10-124 (158)
8 4gpr_A Ubiquitin-conjugating e 100.0 4.9E-45 1.7E-49 244.7 15.2 114 2-115 2-115 (151)
9 2c2v_B Ubiquitin-conjugating e 100.0 8.1E-46 2.8E-50 249.2 11.4 115 1-115 2-116 (154)
10 2e2c_A Ubiquitin conjugating e 100.0 3E-45 1E-49 246.9 13.8 115 1-115 6-120 (156)
11 2ayv_A Ubiquitin-conjugating e 100.0 8E-45 2.7E-49 246.9 14.8 113 3-115 20-132 (166)
12 1z2u_A Ubiquitin-conjugating e 100.0 6.3E-45 2.2E-49 244.0 14.0 114 2-115 2-115 (150)
13 2c4o_A Ubiquitin-conjugating e 100.0 1.4E-44 5E-49 245.5 15.5 113 3-115 18-130 (165)
14 1i7k_A Ubiquitin-conjugating e 100.0 4.5E-45 1.5E-49 250.7 12.2 115 1-115 27-141 (179)
15 2bep_A Ubiquitin-conjugating e 100.0 1.7E-44 5.9E-49 243.9 14.7 115 1-115 5-123 (159)
16 3h8k_A Ubiquitin-conjugating e 100.0 2.2E-44 7.4E-49 244.4 15.1 114 2-115 1-128 (164)
17 1yh2_A HSPC150 protein similar 100.0 2.4E-44 8.1E-49 245.3 15.4 114 2-115 2-119 (169)
18 1yrv_A Ubiquitin-conjugating l 100.0 4.1E-45 1.4E-49 248.9 11.4 115 1-115 20-137 (169)
19 2r0j_A Ubiquitin carrier prote 100.0 2.6E-44 8.8E-49 240.8 13.6 110 6-115 3-112 (149)
20 2gjd_A Ubiquitin-conjugating e 100.0 1.7E-44 5.9E-49 243.5 12.8 115 1-115 1-122 (157)
21 1jat_A Ubiquitin-conjugating e 100.0 9.9E-45 3.4E-49 244.2 11.4 113 3-115 4-116 (155)
22 3rz3_A Ubiquitin-conjugating e 100.0 9.4E-44 3.2E-48 245.0 15.1 115 1-115 3-132 (183)
23 3rcz_B SUMO-conjugating enzyme 100.0 5E-44 1.7E-48 242.4 13.3 114 2-115 8-128 (163)
24 2a4d_A Ubiquitin-conjugating e 100.0 1.1E-43 3.9E-48 239.7 14.8 116 2-117 23-145 (160)
25 1fxt_A Ubiquitin-conjugating e 100.0 2.9E-44 9.8E-49 240.5 11.3 111 5-115 2-114 (149)
26 2grr_A Ubiquitin-conjugating e 100.0 7.3E-44 2.5E-48 241.2 13.2 115 1-115 4-125 (161)
27 3k9o_A Ubiquitin-conjugating e 100.0 6.5E-44 2.2E-48 249.0 13.3 115 1-115 2-120 (201)
28 3bzh_A Ubiquitin-conjugating e 100.0 1.9E-43 6.4E-48 245.3 15.2 113 3-115 47-159 (194)
29 2awf_A Ubiquitin-conjugating e 100.0 1.4E-43 4.9E-48 242.0 14.2 113 3-115 16-142 (172)
30 2pwq_A Ubiquitin conjugating e 100.0 6.2E-44 2.1E-48 251.1 12.3 114 2-115 21-135 (216)
31 2f4z_A Tgtwinscan_2721 - E2 do 100.0 3.5E-43 1.2E-47 243.7 12.9 112 4-115 32-157 (193)
32 3e46_A Ubiquitin-conjugating e 100.0 1.1E-42 3.8E-47 249.5 14.8 115 1-115 54-172 (253)
33 1wzv_A Ubiquitin-conjugating e 100.0 6.4E-43 2.2E-47 235.3 12.5 112 3-115 3-116 (155)
34 2y9m_A Ubiquitin-conjugating e 100.0 1.8E-42 6.2E-47 236.6 14.3 115 1-115 3-132 (172)
35 3fn1_B NEDD8-conjugating enzym 100.0 2.5E-42 8.5E-47 234.9 14.0 113 3-116 13-132 (167)
36 1y8x_A Ubiquitin-conjugating e 100.0 2.8E-42 9.6E-47 233.2 14.1 110 3-115 5-115 (160)
37 2hlw_A Ubiquitin-conjugating e 100.0 8.1E-43 2.8E-47 237.7 11.4 115 3-117 34-155 (170)
38 1tte_A Ubiquitin-conjugating e 100.0 3.7E-43 1.2E-47 247.0 8.3 112 4-115 2-115 (215)
39 2nvu_C NEDD8-conjugating enzym 100.0 4.9E-42 1.7E-46 235.8 13.4 111 2-115 24-135 (180)
40 1jat_B Ubiquitin-conjugating e 100.0 3.8E-42 1.3E-46 227.6 11.8 114 1-115 2-123 (138)
41 2q0v_A Ubiquitin-conjugating e 100.0 9.1E-42 3.1E-46 229.8 12.5 112 3-115 20-138 (156)
42 1c4z_D UBCH7, ubiquitin conjug 100.0 8.7E-42 3E-46 229.5 11.0 110 5-115 3-114 (154)
43 1zuo_A Hypothetical protein LO 100.0 6.8E-42 2.3E-46 236.1 9.6 116 1-116 24-156 (186)
44 4ds2_A Ubiquitin-conjugating e 100.0 3.6E-42 1.2E-46 234.1 8.0 115 1-115 5-134 (167)
45 2onu_A Ubiquitin-conjugating e 100.0 4.8E-42 1.6E-46 230.4 5.6 109 4-115 2-112 (152)
46 3o2u_A NEDD8-conjugating enzym 100.0 2.5E-40 8.4E-45 229.1 13.6 110 3-115 28-144 (190)
47 2z5d_A Ubiquitin-conjugating e 100.0 1.4E-41 4.9E-46 233.1 7.0 111 1-115 20-134 (179)
48 4ddg_A Ubiquitin-conjugating e 100.0 2.3E-40 7.8E-45 250.9 14.2 114 2-115 1-114 (399)
49 2f4w_A Ubiquitin-conjugating e 100.0 2.8E-40 9.4E-45 228.3 12.6 111 3-115 13-126 (187)
50 1yf9_A Ubiquitin carrier prote 100.0 8.4E-41 2.9E-45 228.0 7.9 108 4-115 12-121 (171)
51 3ceg_A Baculoviral IAP repeat- 100.0 2E-39 6.9E-44 238.7 13.8 114 1-114 73-203 (323)
52 2z6o_A UFM1-conjugating enzyme 100.0 2.7E-32 9.1E-37 182.9 0.0 95 6-106 34-143 (172)
53 3r3q_A Suppressor protein STP2 99.9 4.1E-21 1.4E-25 129.3 9.8 110 6-116 30-157 (162)
54 3kpa_A Probable ubiquitin fold 99.8 7.2E-22 2.5E-26 129.9 -0.2 92 6-106 36-145 (168)
55 3obq_A Tumor susceptibility ge 99.7 3.9E-17 1.3E-21 108.2 7.2 83 29-117 49-140 (146)
56 2ebm_A RWD domain-containing p 97.2 0.0024 8.3E-08 40.4 8.1 68 5-74 11-78 (128)
57 2day_A Ring finger protein 25; 97.0 0.016 5.5E-07 36.5 10.1 105 7-115 11-124 (128)
58 3zqs_A E3 ubiquitin-protein li 96.9 0.012 4.2E-07 39.9 9.4 84 7-115 4-88 (186)
59 2yz0_A Serine/threonine-protei 96.7 0.032 1.1E-06 35.6 10.0 69 6-75 12-86 (138)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 95.7 0.11 3.8E-06 32.9 8.5 68 6-74 12-86 (137)
61 2ebk_A RWD domain-containing p 94.9 0.048 1.6E-06 34.3 4.8 65 8-73 11-78 (128)
62 2daw_A RWD domain containing p 94.6 0.19 6.6E-06 32.7 7.3 24 52-75 76-99 (154)
63 2dax_A Protein C21ORF6; RWD do 93.8 0.19 6.7E-06 32.5 6.1 25 51-75 73-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 83.8 1.1 3.7E-05 19.8 2.3 21 4-24 5-25 (26)
65 3rls_A YAF9, protein AF-9 homo 57.1 40 0.0014 22.4 6.2 43 31-75 30-72 (175)
66 2bum_A Protocatechuate 3,4-dio 47.4 21 0.00072 24.3 3.7 25 49-73 109-138 (209)
67 3pft_A Flavin reductase; desul 45.3 12 0.00043 23.9 2.2 30 66-95 43-75 (157)
68 3qrl_A Transcription initiatio 43.3 63 0.0021 20.6 5.8 43 33-77 32-77 (140)
69 3k1l_B Fancl; UBC, ring, RWD, 42.1 35 0.0012 25.5 4.3 49 12-67 6-54 (381)
70 3g9r_A Fusion complex of HIV-1 39.9 26 0.00089 17.4 2.3 15 4-18 28-42 (42)
71 2ecu_A Flavin reductase (HPAC) 33.3 11 0.00037 23.9 0.4 30 66-95 41-73 (149)
72 2c5k_P Vacuolar protein sortin 32.8 26 0.00091 15.7 1.5 15 5-19 11-25 (26)
73 2bum_B Protocatechuate 3,4-dio 28.8 34 0.0012 23.8 2.3 25 49-73 134-165 (241)
74 4hx6_A Oxidoreductase; structu 28.7 15 0.00052 24.2 0.5 31 65-95 57-90 (185)
75 2xsu_A Catechol 1,2 dioxygenas 28.6 34 0.0012 24.8 2.4 25 49-73 187-229 (312)
76 2rf4_B DNA-directed RNA polyme 27.8 35 0.0012 20.0 1.9 13 4-16 62-74 (87)
77 3t63_M 3,4-PCD, protocatechuat 27.3 38 0.0013 23.6 2.3 25 49-73 133-164 (238)
78 3t63_A 3,4-PCD, protocatechuat 27.1 45 0.0016 22.5 2.7 23 51-73 102-129 (200)
79 2r0x_A Possible flavin reducta 27.1 14 0.00047 23.5 0.1 30 66-95 44-76 (158)
80 2azq_A Catechol 1,2-dioxygenas 26.9 38 0.0013 24.6 2.4 24 50-73 184-225 (311)
81 1tmx_A Hydroxyquinol 1,2-dioxy 26.4 40 0.0014 24.2 2.4 25 49-73 183-225 (293)
82 2qck_A Flavin reductase domain 26.1 17 0.0006 23.4 0.4 30 66-95 49-81 (167)
83 1yoa_A Putative flavoprotein; 25.8 13 0.00046 23.5 -0.2 30 66-95 42-74 (159)
84 3n9t_A PNPC; phospholipid bind 25.2 43 0.0015 24.0 2.4 25 49-73 180-222 (290)
85 2d37_A Hypothetical NADH-depen 25.1 32 0.0011 22.4 1.6 29 65-93 60-91 (176)
86 2boy_A 3-chlorocatechol 1,2-di 24.7 45 0.0016 23.4 2.4 24 50-73 154-195 (254)
87 3kxt_A Chromatin protein CREN7 24.6 88 0.003 16.6 3.5 11 55-65 46-56 (56)
88 1dmh_A 1,2-CTD, catechol 1,2-d 23.7 46 0.0016 24.1 2.3 24 50-73 187-228 (311)
89 2cu9_A Spcia1, histone chapero 23.6 1.2E+02 0.0042 19.7 4.2 38 32-69 36-86 (161)
90 1usc_A Putative styrene monoox 22.5 14 0.00049 24.0 -0.5 31 65-95 45-78 (178)
91 1i0r_A Conserved hypothetical 22.2 14 0.00049 23.8 -0.6 31 66-96 38-71 (169)
92 3hhy_A 1,2-CTD, catechol 1,2-d 22.0 47 0.0016 23.7 2.1 24 50-73 183-224 (280)
93 3bnk_A Flavoredoxin; protein-F 21.9 20 0.00067 23.7 0.1 30 66-95 43-75 (196)
94 1u9d_A Hypothetical protein VC 21.5 1.5E+02 0.0052 18.2 5.0 29 5-33 32-60 (122)
95 3e4v_A NADH:FMN oxidoreductase 21.3 21 0.00073 23.3 0.1 30 66-95 46-78 (186)
96 3th1_A Chlorocatechol 1,2-diox 20.4 95 0.0032 21.8 3.4 24 50-73 151-192 (260)
97 3rh7_A Hypothetical oxidoreduc 20.2 40 0.0014 24.3 1.4 30 66-95 58-90 (321)
98 1rz1_A Phenol 2-hydroxylase co 20.2 17 0.00058 23.1 -0.5 30 66-95 42-74 (161)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-46 Score=254.87 Aligned_cols=115 Identities=63% Similarity=1.208 Sum_probs=111.8
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
||+.+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+
T Consensus 81 I~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~ 115 (169)
T 1ayz_A 81 VYANGEICLDILQNRWTPTYDVASILTSIQSLFND 115 (169)
T ss_dssp BCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999975
No 2
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-46 Score=242.92 Aligned_cols=115 Identities=28% Similarity=0.594 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccC-ccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHP 79 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i-~Hp 79 (117)
|+ .+.+||++|++++++++++|+++.+.++|+++|+++|.||+|||||||.|+++|.||++||++||+|+|.|++ |||
T Consensus 4 m~-~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP 82 (125)
T 2fo3_A 4 MG-NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHT 82 (125)
T ss_dssp ------CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBT
T ss_pred ch-HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCC
Confidence 44 4779999999999999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred cccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhccC
Q 033535 80 NIYADGSICLDILQNQWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 80 nv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
||+.+|+||+++|.++|+|++++++||.+|+++|.+.
T Consensus 83 nv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p 119 (125)
T 2fo3_A 83 HVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSA 119 (125)
T ss_dssp TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC--
T ss_pred cCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999863
No 3
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=6.5e-46 Score=249.24 Aligned_cols=115 Identities=93% Similarity=1.493 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
||+.+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 115 (152)
T 2aak_A 81 IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115 (152)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTS
T ss_pred CCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999975
No 4
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-45 Score=249.96 Aligned_cols=115 Identities=42% Similarity=0.910 Sum_probs=110.1
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCC-CCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQD-NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hp 79 (117)
||+.+.+||++|+++|++++++||++.+.+ +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 899999999999999999999999999865 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeecCC-------------CCCCCCcCCHHHHHHHHHHhhcc
Q 033535 80 NIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 80 nv~~~G~icl~~l-------------~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
||+.+|.||+++| .++|+|+++|++||.+|+++|.+
T Consensus 81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~ 129 (165)
T 2ucz_A 81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE 129 (165)
T ss_dssp TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhC
Confidence 9999999999999 67899999999999999999975
No 5
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.7e-46 Score=245.30 Aligned_cols=113 Identities=36% Similarity=0.697 Sum_probs=107.5
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEe--cCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCc-
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGA--PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF- 77 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~--~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~- 77 (117)
||+.+ +||++|++++++++++|+++. +.++|+++|+++|.||+|||||||.|+++|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~-~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~ 98 (136)
T 2a7l_A 20 MASMQ-KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIP 98 (136)
T ss_dssp GTTSC-HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCC
T ss_pred ccHHH-HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcC
Confidence 56534 999999999999999999965 78899999999999999999999999999999999999999999999999
Q ss_pred -cccccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhc
Q 033535 78 -HPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDS 114 (117)
Q Consensus 78 -Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~ 114 (117)
||||+.+|+||+++|.++|+|++++++||++|+++|+
T Consensus 99 ~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 99 VHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999985
No 6
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.3e-45 Score=242.57 Aligned_cols=113 Identities=25% Similarity=0.578 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccC-cccccc
Q 033535 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIY 82 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~ 82 (117)
.+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus 20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 99 (136)
T 2h2y_A 20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVY 99 (136)
T ss_dssp SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhccC
Q 033535 83 ADGSICLDILQNQWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
.+|+||+++|.++|+|++++++||.+|+++|.+.
T Consensus 100 ~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p 133 (136)
T 2h2y_A 100 SNGDICLSVLGDDYNPSLSISGLILSIISMLSSA 133 (136)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSS
T ss_pred CCCEEECccccCCCCCCCcHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999863
No 7
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-45 Score=248.07 Aligned_cols=115 Identities=29% Similarity=0.687 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
||..+.+||++|+++|++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 89 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN 89 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 90 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~ 124 (158)
T 1zdn_A 90 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIH 124 (158)
T ss_dssp BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999975
No 8
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=4.9e-45 Score=244.73 Aligned_cols=114 Identities=42% Similarity=0.865 Sum_probs=111.1
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
++.|.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 82 YADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 115 (151)
T 4gpr_A 82 NKNGVICLDILKDQWSPALTLSRVLLSISSLLTD 115 (151)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHC
T ss_pred CCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999986
No 9
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.1e-46 Score=249.25 Aligned_cols=115 Identities=40% Similarity=0.816 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
||..+.+||++|+++|++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 82 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 116 (154)
T 2c2v_B 82 VDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116 (154)
T ss_dssp BCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTS
T ss_pred CccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999975
No 10
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=3e-45 Score=246.90 Aligned_cols=115 Identities=38% Similarity=0.746 Sum_probs=110.8
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
|++.+.+||++|+++|++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 85 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPN 85 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 86 v~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~ 120 (156)
T 2e2c_A 86 VDQSGNICLDILKENWTASYDVRTILLSLQSLLGE 120 (156)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTS
T ss_pred CccCceEECccccccCCCCCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999975
No 11
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=8e-45 Score=246.94 Aligned_cols=113 Identities=42% Similarity=0.900 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (117)
+.+.+||++|+++|++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 83 ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.+|.||+++|.++|+|+++|++||.+|+++|.+
T Consensus 100 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~ 132 (166)
T 2ayv_A 100 SQGAICLDILKDQWSPALTISKVLLSISSLLTD 132 (166)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCeEEcccccccCCCCCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999975
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=6.3e-45 Score=243.95 Aligned_cols=114 Identities=45% Similarity=0.884 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
|..+.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence 45688999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 82 YADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 115 (150)
T 1z2u_A 82 NSNGSICLDILRSQWSPALTISKVLLSICSLLCD 115 (150)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999975
No 13
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.4e-44 Score=245.49 Aligned_cols=113 Identities=45% Similarity=0.904 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (117)
+.+.+||++|++++++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 83 ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.+|.||+++|.++|+|+++|++||.+|+++|.+
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~ 130 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLSICSLLCD 130 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999975
No 14
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.5e-45 Score=250.66 Aligned_cols=115 Identities=37% Similarity=0.696 Sum_probs=109.4
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
|++.+.+||++|+++|++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|+.+|.||+++|.++|+|+++|++||.+|+++|.+
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~ 141 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLLGE 141 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999975
No 15
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.7e-44 Score=243.89 Aligned_cols=115 Identities=36% Similarity=0.719 Sum_probs=110.4
Q ss_pred CChHHHHHHHHHHHHhhhC---CCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCc
Q 033535 1 MSTPARKRLMRDFKRLQQD---PPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~---~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~ 77 (117)
||+.+.+||++|+++|+++ +++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 7788999999999999985 5789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
||||+ .+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 123 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAA 123 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhC
Confidence 99999 599999999999999999999999999999976
No 16
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.2e-44 Score=244.44 Aligned_cols=114 Identities=43% Similarity=0.867 Sum_probs=109.3
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEecCCC-CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
|+.|.+||++|++++++++++||++.+.++ |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (164)
T 3h8k_A 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN 80 (164)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence 467899999999999999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCC-------------CCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 IYADGSICLDILQ-------------NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|+.+|.||+++|. ++|+|++||++||.+|+++|.+
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~ 128 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcC
Confidence 9999999999997 7899999999999999999976
No 17
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-44 Score=245.31 Aligned_cols=114 Identities=39% Similarity=0.748 Sum_probs=110.6
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
|+.+.+||++|++++++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCC----CCCCCcCCHHHHHHHHHHhhcc
Q 033535 82 YADGSICLDILQ----NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 82 ~~~G~icl~~l~----~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+.+|.||+++|. ++|+|+++|++||.+|+++|.+
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~ 119 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSE 119 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHS
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhC
Confidence 999999999998 8999999999999999999975
No 18
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.1e-45 Score=248.94 Aligned_cols=115 Identities=36% Similarity=0.692 Sum_probs=111.8
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
|++.+.+||++|+++|++++++|+++.+.++|+++|+++|.||+|||||||.|+++|.||++||++||+|+|.|++||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCCcEeecCCC--CCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 I-YADGSICLDILQ--NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v-~~~G~icl~~l~--~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
| +.+|.||+++|. ++|+|++++++||.+|+++|.+
T Consensus 100 I~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~ 137 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSN 137 (169)
T ss_dssp BCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTS
T ss_pred ccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhC
Confidence 9 799999999998 8999999999999999999976
No 19
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.6e-44 Score=240.75 Aligned_cols=110 Identities=43% Similarity=0.866 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCCC
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 85 (117)
.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 82 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 82 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 86 SICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 86 ~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.||+++|.++|+|++++++||.+|+++|.+
T Consensus 83 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 112 (149)
T 2r0j_A 83 RICLDILKDKWSPALQIRTVLLSIQALLSS 112 (149)
T ss_dssp BBCCGGGTTTCCTTSCHHHHHHHHHHHHHS
T ss_pred EEechhcCCCCCCCCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999975
No 20
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.7e-44 Score=243.45 Aligned_cols=115 Identities=34% Similarity=0.754 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecCC-----CCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQD-----NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~~-----~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
||+.+.+||++|++++++++++|+++.+.+ +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 898999999999999999999999998754 489999999999999999999999999999999999999999999
Q ss_pred CccccccCCCcEeecCCCC--CCCCcCCHHHHHHHHHHhhcc
Q 033535 76 MFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|||||+.+|.||+++|.+ +|+|++++++||.+|+++|.+
T Consensus 81 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~ 122 (157)
T 2gjd_A 81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDS 122 (157)
T ss_dssp CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTS
T ss_pred CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhC
Confidence 9999999999999999987 799999999999999999965
No 21
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=9.9e-45 Score=244.17 Aligned_cols=113 Identities=36% Similarity=0.811 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (117)
+.+.+||++|+++|++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 83 ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 84 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 116 (155)
T 1jat_A 84 RLGRICLDVLKTNWSPALQIRTVLLSIQALLAS 116 (155)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999976
No 22
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=9.4e-44 Score=245.03 Aligned_cols=115 Identities=37% Similarity=0.812 Sum_probs=108.3
Q ss_pred CC-hHHHHHHHHHHHHhhhCCCCCeEEe-cCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcc
Q 033535 1 MS-TPARKRLMRDFKRLQQDPPAGISGA-PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (117)
Q Consensus 1 Ms-~~~~~Rl~~E~~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~H 78 (117)
|+ +.+.+||++|+++|++++++|+++. +.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 44 4789999999999999999999999 678899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeecCCC-------------CCCCCcCCHHHHHHHHHHhhcc
Q 033535 79 PNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 79 pnv~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|||+.+|.||+++|. ++|+|+++|++||++|+++|.+
T Consensus 83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~ 132 (183)
T 3rz3_A 83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 132 (183)
T ss_dssp TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhC
Confidence 999999999999996 7899999999999999999976
No 23
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=5e-44 Score=242.38 Aligned_cols=114 Identities=38% Similarity=0.806 Sum_probs=108.2
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEecCCC-----CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccC
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM 76 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~-----~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i 76 (117)
|..|.+||+||++++++++++|+++.+.++ |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++
T Consensus 8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 457999999999999999999999998655 899999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEeecCCCCC--CCCcCCHHHHHHHHHHhhcc
Q 033535 77 FHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 77 ~Hpnv~~~G~icl~~l~~~--W~p~~~i~~vl~~i~~ll~~ 115 (117)
|||||+.+|.||+++|.+. |+|+++|++||.+|+++|.+
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~ 128 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDD 128 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTS
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhC
Confidence 9999999999999999765 99999999999999999965
No 24
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.1e-43 Score=239.74 Aligned_cols=116 Identities=22% Similarity=0.487 Sum_probs=107.9
Q ss_pred ChHHHHHHHHHHHHhhhCCCCC-eEEec-CCCC--cceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCc
Q 033535 2 STPARKRLMRDFKRLQQDPPAG-ISGAP-QDNS--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~-i~~~~-~~~~--~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~ 77 (117)
...+.+||+||++++++++++| +++.+ +++| +++|+++|.||+|||||||.|+++|.||++||++||+|+|.|++|
T Consensus 23 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 102 (160)
T 2a4d_A 23 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 102 (160)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred echHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence 3578899999999999999888 77776 4554 899999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeecCCC--CCCCCcCCHHHHHHHHHHhhccCC
Q 033535 78 HPNIY-ADGSICLDILQ--NQWSPIYDVAAILTSIQVFDSFLP 117 (117)
Q Consensus 78 Hpnv~-~~G~icl~~l~--~~W~p~~~i~~vl~~i~~ll~~~p 117 (117)
||||+ .+|+||+++|. ++|+|++++++||++|+++|.++|
T Consensus 103 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~p 145 (160)
T 2a4d_A 103 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE 145 (160)
T ss_dssp CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTT
T ss_pred eCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCC
Confidence 99999 79999999998 899999999999999999998754
No 25
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2.9e-44 Score=240.51 Aligned_cols=111 Identities=35% Similarity=0.740 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEecCCC-CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccC
Q 033535 5 ARKRLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (117)
+.+||++|++++++++++|+++.+.++ |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999999999999999999877 9999999999999999999999999999999999999999999999999997
Q ss_pred -CCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 84 -DGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 84 -~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 114 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQS 114 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999975
No 26
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=7.3e-44 Score=241.25 Aligned_cols=115 Identities=39% Similarity=0.813 Sum_probs=109.8
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEecC-----CCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-----DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~i~~~~~-----~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
|++.+.+||++|+++|++++++|+.+.+. ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 88889999999999999999999998875 3689999999999999999999999999999999999999999999
Q ss_pred CccccccCCCcEeecCCCC--CCCCcCCHHHHHHHHHHhhcc
Q 033535 76 MFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|||||+.+|.||+++|.+ +|+|++++++||.+|+++|.+
T Consensus 84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~ 125 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 125 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhC
Confidence 9999999999999999986 799999999999999999975
No 27
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=6.5e-44 Score=249.00 Aligned_cols=115 Identities=36% Similarity=0.716 Sum_probs=109.1
Q ss_pred CChHHHHHHHHHHHHhhhCC---CCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCc
Q 033535 1 MSTPARKRLMRDFKRLQQDP---PAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~---~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~ 77 (117)
||+.|.+||++|+++|++++ +.||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 88889999999999999873 679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
||||+ .+|.||+++|.++|+|+++|++||.+|+++|.+
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~ 120 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAA 120 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcC
Confidence 99999 599999999999999999999999999999986
No 28
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.9e-43 Score=245.26 Aligned_cols=113 Identities=37% Similarity=0.795 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (117)
+.+.+||++|+++|++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 83 ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.+|.||+++|.++|+|+++|.+||.+|+++|.+
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~ 159 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLLSICSLLTD 159 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCceechhhhccCCCcCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999976
No 29
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.4e-43 Score=242.01 Aligned_cols=113 Identities=35% Similarity=0.763 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEecCC-CCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAPQD-NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~~~-~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
+.+.+||+||+++|++++++||++.+.+ +|+++|+++|.||++||||||.|+++|.||++||++||+|+|.|++|||||
T Consensus 16 ~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV 95 (172)
T 2awf_A 16 PRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 95 (172)
T ss_dssp CTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCC
Confidence 4688999999999999999999999865 799999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCC-------------CCCCCcCCHHHHHHHHHHhhcc
Q 033535 82 YADGSICLDILQ-------------NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 82 ~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+.+|.||+++|. ++|+|+++|++||.+|+++|.+
T Consensus 96 ~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~ 142 (172)
T 2awf_A 96 DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142 (172)
T ss_dssp CTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSC
T ss_pred CCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHC
Confidence 999999999996 6799999999999999999975
No 30
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=6.2e-44 Score=251.07 Aligned_cols=114 Identities=36% Similarity=0.774 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
++.+.+||++|+++|++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 82 Y-ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 82 ~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+ .+|.||+++|.++|+|+++|++||.+|+++|.+
T Consensus 101 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~ 135 (216)
T 2pwq_A 101 SSQTGAICLDVLKNEWSPALTIRTALLSIQALLSD 135 (216)
T ss_dssp CTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHS
T ss_pred cCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhC
Confidence 9 699999999999999999999999999999976
No 31
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-43 Score=243.69 Aligned_cols=112 Identities=38% Similarity=0.759 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhhhCCC-------------CCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeE
Q 033535 4 PARKRLMRDFKRLQQDPP-------------AGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTV 70 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~-------------~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v 70 (117)
.+.+||++|+++|+++++ +||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 478999999999999887 7999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccccc-CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 71 RFVSRMFHPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 71 ~f~t~i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|.|++|||||+ .+|.||+++|.++|+|+++|++||++|+++|.+
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~ 157 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLAD 157 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHS
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhC
Confidence 999999999999 699999999999999999999999999999976
No 32
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.1e-42 Score=249.45 Aligned_cols=115 Identities=36% Similarity=0.719 Sum_probs=110.6
Q ss_pred CChHHHHHHHHHHHHhhhC---CCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCc
Q 033535 1 MSTPARKRLMRDFKRLQQD---PPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~---~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~ 77 (117)
|++.+.+||++|+++|+++ ++.||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 7888999999999999987 4679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
||||+ .+|.||+++|.++|+|+++|++||.+|+++|.+
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~ 172 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAA 172 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHS
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcC
Confidence 99999 599999999999999999999999999999976
No 33
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=6.4e-43 Score=235.32 Aligned_cols=112 Identities=29% Similarity=0.780 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEE-ecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISG-APQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~-~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
..+.+||++|+++|++++++|+++ .+.++|+++|+++|. |+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 81 (155)
T 1wzv_A 3 HMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 81 (155)
T ss_dssp --CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence 357899999999999999999999 788999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCC-CCCCCCcCCHHHHHHHHHHhhcc
Q 033535 82 YADGSICLDIL-QNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 82 ~~~G~icl~~l-~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+.+|.||+++| .++|+|++++++||.+|+++|.+
T Consensus 82 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~ 116 (155)
T 1wzv_A 82 DENGQICLPIISSENWKPCTKTCQVLEALNVLVNR 116 (155)
T ss_dssp CTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhC
Confidence 99999999999 89999999999999999999975
No 34
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.8e-42 Score=236.57 Aligned_cols=115 Identities=28% Similarity=0.668 Sum_probs=106.1
Q ss_pred CChHHHHHHHHHHHHhhh-C-C------CC---CeEEec-CCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCC
Q 033535 1 MSTPARKRLMRDFKRLQQ-D-P------PA---GISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPP 68 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~-~-~------~~---~i~~~~-~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP 68 (117)
||+.+.+||++|+++|++ + + +. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 888899999999999998 4 3 33 466777 7889999999999999999999999999999999999999
Q ss_pred eEEEec-cCcccccc-CCCcEeecCCC-CCCCCcCCHHHHHHHHHHhhcc
Q 033535 69 TVRFVS-RMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 69 ~v~f~t-~i~Hpnv~-~~G~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|+|.| ++|||||+ .+|.||+++|. ++|+|++++++||.+|+++|.+
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~ 132 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLRE 132 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhC
Confidence 999999 99999996 89999999998 8999999999999999999975
No 35
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2.5e-42 Score=234.92 Aligned_cols=113 Identities=23% Similarity=0.534 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEec-CCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~-~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
+.+.+||++|+++|++++++||++.+ .++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 56899999999999999999999985 568899999998 8999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCCC------CCCCcCCHHHHHHHHHHhhccC
Q 033535 82 YADGSICLDILQN------QWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 82 ~~~G~icl~~l~~------~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
+.+|.||+++|.. +|+|+++|++||.+|+++|.+.
T Consensus 92 ~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~ 132 (167)
T 3fn1_B 92 TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL 132 (167)
T ss_dssp CTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTT
T ss_pred CCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCC
Confidence 9999999999975 7999999999999999999873
No 36
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-42 Score=233.23 Aligned_cols=110 Identities=26% Similarity=0.628 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEe-cCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGA-PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
+.+.+||++|++++ ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 46889999999999 577899998 7889999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 82 YADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~ 115 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYGLQYLFLE 115 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999976
No 37
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=8.1e-43 Score=237.71 Aligned_cols=115 Identities=22% Similarity=0.491 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHhhhCCCCC-eEEec-CCCC--cceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcc
Q 033535 3 TPARKRLMRDFKRLQQDPPAG-ISGAP-QDNS--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~-i~~~~-~~~~--~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~H 78 (117)
+.+.+||++|++++++++++| +++.+ +++| +++|+++|.||+|||||||.|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 357899999999999999888 67776 4554 8999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCcEeecCCC--CCCCCcCCHHHHHHHHHHhhccCC
Q 033535 79 PNIY-ADGSICLDILQ--NQWSPIYDVAAILTSIQVFDSFLP 117 (117)
Q Consensus 79 pnv~-~~G~icl~~l~--~~W~p~~~i~~vl~~i~~ll~~~p 117 (117)
|||+ .+|.||+++|. ++|+|+++|++||.+|+++|.++|
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~p 155 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE 155 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTT
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCC
Confidence 9999 89999999998 899999999999999999998754
No 38
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=3.7e-43 Score=247.01 Aligned_cols=112 Identities=35% Similarity=0.735 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEecCCC-CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc
Q 033535 4 PARKRLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i~~~~~~~-~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (117)
++.+||++|++++++++++||++.+.++ ++++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4679999999999999999999999776 456999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 83 A-DGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 83 ~-~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
. +|.||+++|.++|+|++|+.+||.+|+++|.+
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~ 115 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQS 115 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTS
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhC
Confidence 8 99999999999999999999999999999986
No 39
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.9e-42 Score=235.83 Aligned_cols=111 Identities=25% Similarity=0.593 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEe-cCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccc
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGA-PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpn 80 (117)
++.+.+||++|++++ ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 100 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence 457899999999999 577899998 7889999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 81 IYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 101 V~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~ 135 (180)
T 2nvu_C 101 IDLEGNVALNILREDWKPVLTINSIIYGLQYLFLE 135 (180)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999975
No 40
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=3.8e-42 Score=227.64 Aligned_cols=114 Identities=24% Similarity=0.551 Sum_probs=101.9
Q ss_pred CCh-HHHHHHHHHHHHhhhC-CCCCeEEecCC-C--CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 1 MST-PARKRLMRDFKRLQQD-PPAGISGAPQD-N--SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 1 Ms~-~~~~Rl~~E~~~l~~~-~~~~i~~~~~~-~--~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
||+ .+.+||+||+++++++ +++|+++.+.+ + |+++|+++|.||++||||||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 663 5779999999999998 78899998843 3 58999999999999999999999999999999999999999999
Q ss_pred CccccccCC-CcE--eecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 76 MFHPNIYAD-GSI--CLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 76 i~Hpnv~~~-G~i--cl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|||||+.+ |.| |+++|+ +|+|++++++||.+|+++|.+
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~ 123 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMAT 123 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTS
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcC
Confidence 999999975 999 899886 899999999999999999976
No 41
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=9.1e-42 Score=229.76 Aligned_cols=112 Identities=27% Similarity=0.523 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHhhhC-CCCCeEEecCC-C--CcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcc
Q 033535 3 TPARKRLMRDFKRLQQD-PPAGISGAPQD-N--SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~-~~~~i~~~~~~-~--~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~H 78 (117)
+.+.+||++|+++++++ +++|+++.+.+ + |+++|+++|.||++||||||.|+++|.||++||++||+|+|.|++||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 99 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence 45789999999999998 78899998843 3 59999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcE---eecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 79 PNIYADGSI---CLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 79 pnv~~~G~i---cl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
|||+.+|+| |+++|+ +|+|++++++||.+|+++|.+
T Consensus 100 PNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~ 138 (156)
T 2q0v_A 100 SCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLS 138 (156)
T ss_dssp TTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTS
T ss_pred CCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhC
Confidence 999999999 888887 599999999999999999976
No 42
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=8.7e-42 Score=229.55 Aligned_cols=110 Identities=26% Similarity=0.736 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEe-cCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccC
Q 033535 5 ARKRLMRDFKRLQQDPPAGISGA-PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~i~~~-~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 83 (117)
+.+||++|+++|++++++|+.+. +.++|+++|+++|. |+||||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 67999999999999999999865 47789999999997 99999999999999999999999999999999999999999
Q ss_pred CCcEeecCCC-CCCCCcCCHHHHHHHHHHhhcc
Q 033535 84 DGSICLDILQ-NQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 84 ~G~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|.||+++|. ++|+|++++++||.+|+++|.+
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~ 114 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQSLIALVND 114 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHS
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcC
Confidence 9999999996 7899999999999999999975
No 43
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=6.8e-42 Score=236.12 Aligned_cols=116 Identities=22% Similarity=0.447 Sum_probs=110.3
Q ss_pred CChHHHHHHHHHHHHhhhCC---CCCeEEecCCCCcceEEEEEeCC-CCCCCCC-----------CeEEEEeeCCCCCCC
Q 033535 1 MSTPARKRLMRDFKRLQQDP---PAGISGAPQDNSIMLWNAVIFGP-DDTPWDG-----------GTFKLTLQFTEDYPN 65 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~---~~~i~~~~~~~~~~~w~~~i~gp-~~t~yeg-----------~~~~~~i~fp~~YP~ 65 (117)
|++.+.+||++|+++|++++ +.++++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 67889999999999999998 67899999999999999999998 8999998 899999999999999
Q ss_pred CCCeEEEeccCccc-cccCCCcEeecCCC-CCCCCcCCHHHHHHHHHHhhccC
Q 033535 66 KPPTVRFVSRMFHP-NIYADGSICLDILQ-NQWSPIYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 66 ~pP~v~f~t~i~Hp-nv~~~G~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~~ 116 (117)
+||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||++|+++|.+.
T Consensus 104 ~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p 156 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKG 156 (186)
T ss_dssp SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCC
Confidence 99999999999999 69999999999997 78999999999999999999874
No 44
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=3.6e-42 Score=234.14 Aligned_cols=115 Identities=27% Similarity=0.593 Sum_probs=108.0
Q ss_pred CChHHHHHHHHHHHHhhhCC------------CCCeEEecCCCCcceEEEEEeCCCCCCCC--CCeEEEEeeCCCCCCCC
Q 033535 1 MSTPARKRLMRDFKRLQQDP------------PAGISGAPQDNSIMLWNAVIFGPDDTPWD--GGTFKLTLQFTEDYPNK 66 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~------------~~~i~~~~~~~~~~~w~~~i~gp~~t~ye--g~~~~~~i~fp~~YP~~ 66 (117)
||+.+.+||++|+++|++++ ..++.+.+.++|+++|+++|.||+||+|+ ||.|+++|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 88889999999999999987 67899999999999999999999999999 99999999999999999
Q ss_pred CCeEEEeccCccccccCCCcEeecCCCCCCCCcCCHHHHHH-HHHHhhcc
Q 033535 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT-SIQVFDSF 115 (117)
Q Consensus 67 pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~-~i~~ll~~ 115 (117)
||+|+|.|++|||||+.+|.||+++|.++|+|+++++++|+ .|++++..
T Consensus 85 pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~ 134 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQ 134 (167)
T ss_dssp CCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTS
T ss_pred CCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999764 57777764
No 45
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=4.8e-42 Score=230.40 Aligned_cols=109 Identities=27% Similarity=0.692 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc-
Q 033535 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY- 82 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~- 82 (117)
++.+||++|+++++++ |+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 4679999999999874 788888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeecCCCCCCCCcCCHHHHHHH-HHHhhcc
Q 033535 83 ADGSICLDILQNQWSPIYDVAAILTS-IQVFDSF 115 (117)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~vl~~-i~~ll~~ 115 (117)
.+|.||+++|.++|+|++++++||.+ |++||.+
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~ 112 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTY 112 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHS
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 6788864
No 46
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=2.5e-40 Score=229.05 Aligned_cols=110 Identities=33% Similarity=0.651 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEe----cCCCCcc---eEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGA----PQDNSIM---LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~----~~~~~~~---~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
+.+.+||++|+++|+ +++|+++. +.++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp CHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred cHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 578999999999998 67899998 8899999 9999996 888999999999999999999999999999999
Q ss_pred CccccccCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 76 MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+|||||+.+|.||+++|.++|+|++++++||.+|+++|.+
T Consensus 105 i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~ 144 (190)
T 3o2u_A 105 IFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLE 144 (190)
T ss_dssp CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred cccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999976
No 47
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=233.10 Aligned_cols=111 Identities=29% Similarity=0.738 Sum_probs=101.9
Q ss_pred CCh--HHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcc
Q 033535 1 MST--PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (117)
Q Consensus 1 Ms~--~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~H 78 (117)
|++ .+.+||++|+++|++ +|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~H 95 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFH 95 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred CCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCcc
Confidence 554 488999999999985 47888876 678999999999999999999999999999999999999999999999
Q ss_pred ccccC-CCcEeecCCCCCCCCcCCHHHHHHH-HHHhhcc
Q 033535 79 PNIYA-DGSICLDILQNQWSPIYDVAAILTS-IQVFDSF 115 (117)
Q Consensus 79 pnv~~-~G~icl~~l~~~W~p~~~i~~vl~~-i~~ll~~ 115 (117)
|||+. +|.||+++|.++|+|++++++||.+ |+++|.+
T Consensus 96 PNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~ 134 (179)
T 2z5d_A 96 PNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAY 134 (179)
T ss_dssp TTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHS
T ss_pred CcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 99997 9999999999999999999999999 9999875
No 48
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2.3e-40 Score=250.86 Aligned_cols=114 Identities=44% Similarity=0.861 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccc
Q 033535 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (117)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 81 (117)
++.|.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 1 ~s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 80 (399)
T 4ddg_A 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80 (399)
T ss_dssp CHHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 82 YADGSICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
+.+|.||+++|.++|+|++|+++||.+|+++|.+
T Consensus 81 ~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~ 114 (399)
T 4ddg_A 81 NSNGSISLDILRSQWSPALTISKVLLSICSLLCD 114 (399)
T ss_dssp CTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCeEeCcccccCCCccccHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999986
No 49
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-40 Score=228.31 Aligned_cols=111 Identities=32% Similarity=0.690 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc
Q 033535 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (117)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (117)
+.+.+||++|+++|++++++||.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+ ||||+
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~ 90 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK 90 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence 3588999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCCcEeecCC---CCCCCCcCCHHHHHHHHHHhhcc
Q 033535 83 ADGSICLDIL---QNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 83 ~~G~icl~~l---~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.+|.||+++| .++|+|+++|.+||.+|+++|.+
T Consensus 91 ~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~ 126 (187)
T 2f4w_A 91 CNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVE 126 (187)
T ss_dssp TTSCBC----------CCTTCCHHHHHHHHHHHHHS
T ss_pred cCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcC
Confidence 9999999999 68899999999999999999975
No 50
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=8.4e-41 Score=228.04 Aligned_cols=108 Identities=29% Similarity=0.680 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCcccccc-
Q 033535 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY- 82 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~- 82 (117)
++.+||++|+++|++++. ++ ..++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 567999999999999874 44 3578999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeecCCCCCCCCcCCHHHHHHHH-HHhhcc
Q 033535 83 ADGSICLDILQNQWSPIYDVAAILTSI-QVFDSF 115 (117)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~vl~~i-~~ll~~ 115 (117)
.+|.||+++|.++|+|++++++||.+| ++||.+
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~ 121 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRY 121 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHS
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhC
Confidence 599999999999999999999999997 688864
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=238.66 Aligned_cols=114 Identities=31% Similarity=0.642 Sum_probs=107.3
Q ss_pred CChHHHHHHHHHHHHhhhCCCCC----eEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc-
Q 033535 1 MSTPARKRLMRDFKRLQQDPPAG----ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR- 75 (117)
Q Consensus 1 Ms~~~~~Rl~~E~~~l~~~~~~~----i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~- 75 (117)
||+.+.+||++|+++|++++++| +.+.+.++|++.|+++|.||+||||+||.|++.|.||++||++||+|+|.|+
T Consensus 73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~ 152 (323)
T 3ceg_A 73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTG 152 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCST
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccC
Confidence 57789999999999999988774 5577789999999999999999999999999999999999999999999998
Q ss_pred ----CccccccCCCcEeecCCC-------CCCCCcC-CHHHHHHHHHHhhc
Q 033535 76 ----MFHPNIYADGSICLDILQ-------NQWSPIY-DVAAILTSIQVFDS 114 (117)
Q Consensus 76 ----i~Hpnv~~~G~icl~~l~-------~~W~p~~-~i~~vl~~i~~ll~ 114 (117)
+|||||+.+|.||+++|. ++|+|++ +|.+||++|++||.
T Consensus 153 g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~ 203 (323)
T 3ceg_A 153 GHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLIL 203 (323)
T ss_dssp TTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTS
T ss_pred CCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHc
Confidence 999999999999999997 6899999 89999999999995
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.97 E-value=2.7e-32 Score=182.91 Aligned_cols=95 Identities=20% Similarity=0.384 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCeEEEecc
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~----------~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
.+||++|+++|++ ++.+.++|+..|...+.||+||+|+|| .|+++|.||++||.+||+|+|.+.
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~ 107 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPEL 107 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCC
Confidence 9999999999998 366778899999999999999999999 999999999999999999999998
Q ss_pred -CccccccCCCcEeecCCCC----CCCCcCCHHHHH
Q 033535 76 -MFHPNIYADGSICLDILQN----QWSPIYDVAAIL 106 (117)
Q Consensus 76 -i~Hpnv~~~G~icl~~l~~----~W~p~~~i~~vl 106 (117)
+|||||+.+|+||||+|.. .|+|+++|.++|
T Consensus 108 ~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 108 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM 143 (172)
T ss_dssp TTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred CCCCCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence 9999999999999999943 466999999997
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.85 E-value=4.1e-21 Score=129.30 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhhCCC---CCeEEecCCCCcceEEEEEeCCCCCCCCCCe---EEEEeeCCCCCCCCCCeEEEec-----
Q 033535 6 RKRLMRDFKRLQQDPP---AGISGAPQDNSIMLWNAVIFGPDDTPWDGGT---FKLTLQFTEDYPNKPPTVRFVS----- 74 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~---~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~---~~~~i~fp~~YP~~pP~v~f~t----- 74 (117)
.+|..+|+.++.+.-+ +...+...+|...++-+.+.|....+|+|+. |.+.|-||.+||++||.|.|.+
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 3567778887654322 1233445677777888888888889999999 8899999999999999997754
Q ss_pred --c---Cc-cccccCCCcEeecCCCCCCCC-cCCHHHHHHHHHHhhccC
Q 033535 75 --R---MF-HPNIYADGSICLDILQNQWSP-IYDVAAILTSIQVFDSFL 116 (117)
Q Consensus 75 --~---i~-Hpnv~~~G~icl~~l~~~W~p-~~~i~~vl~~i~~ll~~~ 116 (117)
+ ++ |||||.+|+||+++|. +|+| +.++.++|.+|+++|.+.
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep 157 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEP 157 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCC
T ss_pred cccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCC
Confidence 1 77 9999999999999994 6999 579999999999999864
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.82 E-value=7.2e-22 Score=129.93 Aligned_cols=92 Identities=22% Similarity=0.479 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCeEEEecc
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~----------~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
..||+.|++.|-+. ++...++...|.....||+||+|+|+ .|++++.||.+||.+||.|+|.+.
T Consensus 36 ~~RlkeEy~alI~y------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~l 109 (168)
T 3kpa_A 36 TARLKEEYASLITY------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPEL 109 (168)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHH------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccc
Confidence 57999999998532 44455566789999999999999999 899999999999999999999995
Q ss_pred -CccccccCCCcEeecCCCCCCCC-------cCCHHHHH
Q 033535 76 -MFHPNIYADGSICLDILQNQWSP-------IYDVAAIL 106 (117)
Q Consensus 76 -i~Hpnv~~~G~icl~~l~~~W~p-------~~~i~~vl 106 (117)
.+|||++.+|+|||+++ |+| .++|...+
T Consensus 110 dgkt~kmYr~GkICLdIh---wkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 110 EGKTVKMYRGGKICMTTH---FFPLWARNVPYFGISHVL 145 (168)
T ss_dssp TTTCSSEETTTEECCCTT---HHHHHHHTTTTCCHHHHH
T ss_pred cCcCccccCCCcEEeccc---cchhhHhcCCchhHHHHH
Confidence 89999999999999987 665 45566554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.70 E-value=3.9e-17 Score=108.22 Aligned_cols=83 Identities=25% Similarity=0.470 Sum_probs=73.6
Q ss_pred CCCCcceEEEEEeCCCCCCCCCCeEE--EEeeCCCCCCCCCCeEEEecc------CccccccCCCcEeecCCCCCCCC-c
Q 033535 29 QDNSIMLWNAVIFGPDDTPWDGGTFK--LTLQFTEDYPNKPPTVRFVSR------MFHPNIYADGSICLDILQNQWSP-I 99 (117)
Q Consensus 29 ~~~~~~~w~~~i~gp~~t~yeg~~~~--~~i~fp~~YP~~pP~v~f~t~------i~Hpnv~~~G~icl~~l~~~W~p-~ 99 (117)
...+++.|.++|. .+|+|+.|. +.|-||++||++||.| |.++ ..|+|||.+|+||++.|.+ |++ .
T Consensus 49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~ 122 (146)
T 3obq_A 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQ 122 (146)
T ss_dssp TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTT
T ss_pred ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCC
Confidence 3468899999995 579999998 4999999999999999 6665 5899999999999999965 988 7
Q ss_pred CCHHHHHHHHHHhhccCC
Q 033535 100 YDVAAILTSIQVFDSFLP 117 (117)
Q Consensus 100 ~~i~~vl~~i~~ll~~~p 117 (117)
.++.+++..+++.|.++|
T Consensus 123 snL~~ll~~l~~~F~~ep 140 (146)
T 3obq_A 123 SDLLGLIQVMIVVFGDEP 140 (146)
T ss_dssp CCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhhCC
Confidence 899999999999999887
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.23 E-value=0.0024 Score=40.41 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEec
Q 033535 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS 74 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t 74 (117)
...+...|+..|+.--+..+.+. .+....+.+.+..-.+..-+.-.+.+.+.+|++||.+||.+...+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 34567789999886655555543 222356666665322222234578999999999999999998766
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.96 E-value=0.016 Score=36.49 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhCCCCCeEEecCC--CCcceEEEEEeCCCCCCCC--CCeEEEEeeCCCCCCCCCCeEEEeccCcccccc
Q 033535 7 KRLMRDFKRLQQDPPAGISGAPQD--NSIMLWNAVIFGPDDTPWD--GGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~~~~~~--~~~~~w~~~i~gp~~t~ye--g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 82 (117)
.+...|+..|+.--+..+.+.... .....+.+.+..+.+..-+ .-.+.+.+.+|++||..+|.|...+.. ++.
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~---~L~ 87 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR---GLS 87 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEE---SSC
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCC---CCC
Confidence 356788888887655566554322 2344555666432221111 247889999999999999999887632 121
Q ss_pred C--CCcEeecCCCCCC--CCcC-CHHHHHHHHHHhhcc
Q 033535 83 A--DGSICLDILQNQW--SPIY-DVAAILTSIQVFDSF 115 (117)
Q Consensus 83 ~--~G~icl~~l~~~W--~p~~-~i~~vl~~i~~ll~~ 115 (117)
. -..+| +.|.+.| .... -+.+++..++..|.+
T Consensus 88 ~~~~~~L~-~~L~~~~~e~~G~~mif~lv~~lqe~l~~ 124 (128)
T 2day_A 88 DEQIHTIL-QVLGHVAKAGLGTAMLYELIEKGKEILSG 124 (128)
T ss_dssp HHHHHHHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHH-HHHHHHHHHhCCCEEhHHHHHHHHHHHHh
Confidence 0 00111 1222233 2222 367777777776654
No 58
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=96.88 E-value=0.012 Score=39.95 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhCCCCCeE-EecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEeccCccccccCCC
Q 033535 7 KRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (117)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~i~-~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 85 (117)
++|.+|+.++ |+. +.-.++++....+.+.... |..+.+++.++.+||.++|.+..--|. |.
T Consensus 4 ~~li~Ei~~i------GW~~l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~----- 65 (186)
T 3zqs_A 4 SSLIEEIGTL------GWDKLVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF----- 65 (186)
T ss_dssp CSHHHHHHHH------CGGGEEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC-----
T ss_pred HHHHHHHHHh------CCceeeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-----
Confidence 4678888888 442 2223567888888887433 679999999999999999976544443 11
Q ss_pred cEeecCCCCCCCCcCCHHHHHHHHHHhhcc
Q 033535 86 SICLDILQNQWSPIYDVAAILTSIQVFDSF 115 (117)
Q Consensus 86 ~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 115 (117)
.-.|+|..++.+++.+.+..|.+
T Consensus 66 -------~~~w~~~ssL~~v~~qF~~~Le~ 88 (186)
T 3zqs_A 66 -------CASWTPQSSLISIYSQFLAAIES 88 (186)
T ss_dssp -------CCCCCTTCCHHHHHHHHHHHHHH
T ss_pred -------ccccCCCccHHHHHHHHHHHHHH
Confidence 13699999999999888877653
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.032 Score=35.59 Aligned_cols=69 Identities=10% Similarity=0.190 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCC------CCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQD------NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~------~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
..+...|+..|+.--+..+.+.... +....+.+.+....+ .-..-.+.+.+.+|++||..+|.|.+.+.
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 4456778888876554444432111 124567777763322 11234788999999999999999988754
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.66 E-value=0.11 Score=32.85 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhCCCCCeEEecCCC-----CcceEEEEEeCCCC-C-CCCCCeEEEEeeCCCCCCCCCCeEEEec
Q 033535 6 RKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDD-T-PWDGGTFKLTLQFTEDYPNKPPTVRFVS 74 (117)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~i~~~~~~~-----~~~~w~~~i~gp~~-t-~yeg~~~~~~i~fp~~YP~~pP~v~f~t 74 (117)
..+...|+..|+.--+..+.+..... ....+.+.+. +.+ . .-..-.+.+.|.||++||..+|.|...+
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 45667888888766555555432211 1345666664 322 1 0012468899999999999999998754
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.88 E-value=0.048 Score=34.32 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhCCCC--CeEEec-CCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEe
Q 033535 8 RLMRDFKRLQQDPPA--GISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV 73 (117)
Q Consensus 8 Rl~~E~~~l~~~~~~--~i~~~~-~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~ 73 (117)
+...|+..|+.--+. .+.+.. ...+...+.+.+.. .+..-..-.+.+.+.+|++||..+|.|...
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 456788877654332 333221 11234577777753 221111247899999999999999998655
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.55 E-value=0.19 Score=32.73 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.8
Q ss_pred eEEEEeeCCCCCCCCCCeEEEecc
Q 033535 52 TFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 52 ~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
.+.+.|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999987764
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.83 E-value=0.19 Score=32.49 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.8
Q ss_pred CeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 51 ~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
-.+.+.+.+|.+||..||.|...+.
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999987764
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=83.82 E-value=1.1 Score=19.84 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCe
Q 033535 4 PARKRLMRDFKRLQQDPPAGI 24 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~i 24 (117)
+...||..|+...+.+++.|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 457899999999999998874
No 65
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=57.05 E-value=40 Score=22.39 Aligned_cols=43 Identities=21% Similarity=0.432 Sum_probs=30.9
Q ss_pred CCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeEEEecc
Q 033535 31 NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (117)
Q Consensus 31 ~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~pP~v~f~t~ 75 (117)
+.-.+|.+.+.|+.+.-...-.=++.+.|.+.||. |...+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 45679999999987654444567788899999974 55555444
No 66
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=47.43 E-value=21 Score=24.30 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCCeEEEEeeCCCCCCC-----CCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYPN-----KPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP~-----~pP~v~f~ 73 (117)
+.|.|.|+=.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 46899999999999998 79988876
No 67
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=45.28 E-value=12 Score=23.86 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=24.4
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--|++|..+|..|+++|.++
T Consensus 43 ~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 75 (157)
T 3pft_A 43 EPPLVAFAVQNSSTTWPKLKDLPSLGISVLGEA 75 (157)
T ss_dssp TTTEEEEEEETTCSSHHHHTTSSCEEEEECBTT
T ss_pred CCcEEEEEECCCCchHHHHHhCCEEEEEECCHH
Confidence 68888775 4567899999999999999754
No 68
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=43.26 E-value=63 Score=20.64 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=31.9
Q ss_pred cceEE--EEEeCCCCCCCC-CCeEEEEeeCCCCCCCCCCeEEEeccCc
Q 033535 33 IMLWN--AVIFGPDDTPWD-GGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (117)
Q Consensus 33 ~~~w~--~~i~gp~~t~ye-g~~~~~~i~fp~~YP~~pP~v~f~t~i~ 77 (117)
...|. +.+.|++|.... .-.=++.+.+.+.|+. |...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 46998 899999987554 4566788888898874 7777776654
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=42.08 E-value=35 Score=25.48 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=37.5
Q ss_pred HHHHhhhCCCCCeEEecCCCCcceEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCC
Q 033535 12 DFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKP 67 (117)
Q Consensus 12 E~~~l~~~~~~~i~~~~~~~~~~~w~~~i~gp~~t~yeg~~~~~~i~fp~~YP~~p 67 (117)
.++++..++.+|..++..+++.....+++. -+|.+.++++.+|. ||.-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~ 54 (381)
T 3k1l_B 6 DVERLLCQKYPGLAAELQPSGACIIRGVLG------SEDTWRRLKLYLPH-HPALH 54 (381)
T ss_dssp CHHHHHHHHCTTEEEEECTTSCEEEEEEEE------ETTEEEEEEEEETB-TTBCT
T ss_pred hHHHHHHHhCCceEEEecCCCcEEEEEEEE------ecCceEEEEEccCC-Ccccc
Confidence 455566667899999999988877777775 26789999999976 87643
No 70
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=39.88 E-value=26 Score=17.38 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhh
Q 033535 4 PARKRLMRDFKRLQQ 18 (117)
Q Consensus 4 ~~~~Rl~~E~~~l~~ 18 (117)
+..+|+..|++++.+
T Consensus 28 ~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 28 SKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 467899999998863
No 71
>2ecu_A Flavin reductase (HPAC) of 4-hydroxyphenylacetate monooxygnease; flavin diffusible, two-component monooxyge oxidoreductase; HET: 1PG 12P; 1.30A {Thermus thermophilus} PDB: 2ecr_A* 2ed4_A*
Probab=33.31 E-value=11 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=24.6
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--|++|..+|..|+++|.++
T Consensus 41 ~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 73 (149)
T 2ecu_A 41 EPPLVALAVSERAKLLPVLEGAGAFTVSLLREG 73 (149)
T ss_dssp TTTEEEEEEETTCTHHHHHHHHTEEEEEECBTT
T ss_pred CCCEEEEEECCCChhHHHHHhCCEEEEEECcHH
Confidence 68988776 3566889999999999999765
No 72
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=32.81 E-value=26 Score=15.70 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhC
Q 033535 5 ARKRLMRDFKRLQQD 19 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~ 19 (117)
-.|++++|+..|+.+
T Consensus 11 dKR~lLkeyY~L~~~ 25 (26)
T 2c5k_P 11 DRRLLLREFYNLENX 25 (26)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhhcc
Confidence 356788899888753
No 73
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=28.78 E-value=34 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCCeEEEEeeCCCCCC-------CCCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYP-------NKPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP-------~~pP~v~f~ 73 (117)
+.|.|.|+-.+|--|| ..||.|.|.
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~ 165 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFS 165 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEE
Confidence 4589999999999998 479999886
No 74
>4hx6_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.89A {Streptomyces globisporus}
Probab=28.72 E-value=15 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
..||.|.+. +.--|.||..+|.+|+++|.++
T Consensus 57 ~~PPlv~v~i~~~~~T~~~i~~~g~F~Vnvl~~~ 90 (185)
T 4hx6_A 57 LSPPLVLICVGKDAVMHQRLTALPTFAVSVLEAG 90 (185)
T ss_dssp TTTTEEEEEEETTSHHHHHHHHSCEEEEEECBTT
T ss_pred CCCCEEEEEECCCcHHHHHHHHCCeEEEEECCHH
Confidence 368988876 3456889999999999999754
No 75
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=28.61 E-value=34 Score=24.81 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=20.9
Q ss_pred CCCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
+.|.|.|.-.+|.-|| ..||.|.|.
T Consensus 187 ~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~ 229 (312)
T 2xsu_A 187 VNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYF 229 (312)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEE
Confidence 3588999999999998 568888876
No 76
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=27.77 E-value=35 Score=19.97 Aligned_cols=13 Identities=54% Similarity=0.777 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHh
Q 033535 4 PARKRLMRDFKRL 16 (117)
Q Consensus 4 ~~~~Rl~~E~~~l 16 (117)
+.+||+++|++-|
T Consensus 62 sQLKRvQRdlrGL 74 (87)
T 2rf4_B 62 SQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCC
Confidence 3578888888765
No 77
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=27.30 E-value=38 Score=23.60 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCCeEEEEeeCCCCCCC-------CCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYPN-------KPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP~-------~pP~v~f~ 73 (117)
+.|.|.|+=++|--||. .||.|.|.
T Consensus 133 ~~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~ 164 (238)
T 3t63_M 133 SDGYYSFRTIKPGPAPWRNGPNDWRPAHIYFG 164 (238)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEECCcCccCCCCCCCCcCCeEEEE
Confidence 35899999999999986 78999887
No 78
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=27.11 E-value=45 Score=22.48 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred CeEEEEeeCCCCCCCC-----CCeEEEe
Q 033535 51 GTFKLTLQFTEDYPNK-----PPTVRFV 73 (117)
Q Consensus 51 ~~~~~~i~fp~~YP~~-----pP~v~f~ 73 (117)
|.|.|+=.+|.-||.. ||.|.|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 8999999999999987 8888776
No 79
>2r0x_A Possible flavin reductase; split barrel-like, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE SO4; 1.06A {Haemophilus somnus 129PT}
Probab=27.06 E-value=14 Score=23.54 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=24.1
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--|++|..+|..|+++|.++
T Consensus 44 ~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 76 (158)
T 2r0x_A 44 SPPTLLVCINSNARAYEHFVKNRVLMVNTLTAE 76 (158)
T ss_dssp TTEEEEEEEETTSTTHHHHHHHCEEEEEECBTT
T ss_pred CCCEEEEEeCCCChHHHHHHhCCEEEEEeCCHH
Confidence 57888765 3567889999999999999755
No 80
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=26.88 E-value=38 Score=24.56 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=20.7
Q ss_pred CCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
.|.|.|.=.+|.-|| ..||.|.|.
T Consensus 184 ~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 184 EGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 488999999999998 459999886
No 81
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=26.41 E-value=40 Score=24.24 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=21.2
Q ss_pred CCCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
+.|.|.|+=.+|.-|| ..||.|.|.
T Consensus 183 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 225 (293)
T 1tmx_A 183 PDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFM 225 (293)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEE
Confidence 4688999999999998 458999886
No 82
>2qck_A Flavin reductase domain protein; YP_831077.1, flavin reducta domain, structural genomics, joint center for structural GE JCSG; 1.90A {Arthrobacter SP}
Probab=26.08 E-value=17 Score=23.43 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--|++|..+|..|+++|.++
T Consensus 49 ~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 81 (167)
T 2qck_A 49 QPPRFTFNMARSSSSWPAIANTTHIGVHMLGLD 81 (167)
T ss_dssp TTEEEEEEEETTSTTHHHHHHCCEEEEEECBGG
T ss_pred CCCEEEEEECCCCchHHHHHhCCeEEEEECcHH
Confidence 67888776 3567899999999999999654
No 83
>1yoa_A Putative flavoprotein; HB8, FAD, structural genomics, riken structura genomics/proteomics initiative, RSGI, unknown function; HET: FAD FMN; 1.90A {Thermus thermophilus} SCOP: b.45.1.2 PDB: 1wgb_A*
Probab=25.83 E-value=13 Score=23.53 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--|+||..+|..|++++.++
T Consensus 42 ~Pp~v~v~i~~~~~t~~~i~~~~~f~Vnvl~~~ 74 (159)
T 1yoa_A 42 QPPLVAVGLKRDSHLHALVERTGKLALMTLAHD 74 (159)
T ss_dssp TTTEEEEEEESSSHHHHHHHHHCEEEEEECBTT
T ss_pred CCCEEEEEECCCCchHHHHHhCCeEEEEECchh
Confidence 57887775 3456889999999999999754
No 84
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=25.18 E-value=43 Score=24.01 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=21.2
Q ss_pred CCCeEEEEeeCCCCCCC------------------CCCeEEEe
Q 033535 49 DGGTFKLTLQFTEDYPN------------------KPPTVRFV 73 (117)
Q Consensus 49 eg~~~~~~i~fp~~YP~------------------~pP~v~f~ 73 (117)
+.|.|.|+=.+|.-||. .||.|.|.
T Consensus 180 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 222 (290)
T 3n9t_A 180 NDGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFM 222 (290)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEE
Confidence 34899999999999994 58999886
No 85
>2d37_A Hypothetical NADH-dependent FMN oxidoreductase; flavin reductase; HET: FMN NAD; 1.70A {Sulfolobus tokodaii} PDB: 2d36_A* 2d38_A*
Probab=25.15 E-value=32 Score=22.40 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=23.9
Q ss_pred CCCCeEEEe---ccCccccccCCCcEeecCCC
Q 033535 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQ 93 (117)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~ 93 (117)
..||.|.+. +.--|++|..+|.+|+++|.
T Consensus 60 ~~PPlv~v~i~~~~~T~~~i~~sg~F~Vnvl~ 91 (176)
T 2d37_A 60 LNPPLVSFFADRMKGNDIPYKESKYFVVNFTD 91 (176)
T ss_dssp TTTTEEEEEEEGGGTTTHHHHTCSEEEEEEEC
T ss_pred CCCCEEEEEECCCchHHHHHHhCCeEEEEchh
Confidence 368988776 45678999999999999986
No 86
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=24.70 E-value=45 Score=23.39 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=20.2
Q ss_pred CCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
.|.|.|.-..|.-|| ..||.|.|.
T Consensus 154 ~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~~RpaHIH~~ 195 (254)
T 2boy_A 154 NGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWI 195 (254)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CceEEEEEECCccccCCCCCcHHHHHHhcccccCCCceEEEE
Confidence 488999999999887 468998886
No 87
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=24.56 E-value=88 Score=16.62 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=8.3
Q ss_pred EEeeCCCCCCC
Q 033535 55 LTLQFTEDYPN 65 (117)
Q Consensus 55 ~~i~fp~~YP~ 65 (117)
|+-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 35678999984
No 88
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=23.72 E-value=46 Score=24.09 Aligned_cols=24 Identities=17% Similarity=0.620 Sum_probs=20.7
Q ss_pred CCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
.|.|.|.=.+|.-|| ..||.|.|.
T Consensus 187 ~G~y~F~TI~Pg~Yp~p~dgp~g~lL~~~grh~~RpaHIHf~ 228 (311)
T 1dmh_A 187 NGQYRVRTILPAGYGCPPEGPTQQLLNQLGRHGNRPAHIHYF 228 (311)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECSEEEEE
T ss_pred CceEEEEEEcCCcccCCCCCcHHHHHHhcccCCCCCceEEEE
Confidence 488999999999997 458999886
No 89
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=23.64 E-value=1.2e+02 Score=19.74 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=26.5
Q ss_pred CcceEEEEEeCCCC-------------CCCCCCeEEEEeeCCCCCCCCCCe
Q 033535 32 SIMLWNAVIFGPDD-------------TPWDGGTFKLTLQFTEDYPNKPPT 69 (117)
Q Consensus 32 ~~~~w~~~i~gp~~-------------t~yeg~~~~~~i~fp~~YP~~pP~ 69 (117)
+..+|.++..|..+ +|-.-|.++|.+.-++=-+.+-|.
T Consensus 36 ~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP~ 86 (161)
T 2cu9_A 36 SDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQ 86 (161)
T ss_dssp SCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCCGGGSSC
T ss_pred CCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCChhHCCC
Confidence 45699999988664 355668888888876555555554
No 90
>1usc_A Putative styrene monooxygenase small component; FMN-binding protein, structural genomics, riken structural genomics/proteomics initiative; HET: FMN; 1.24A {Thermus thermophilus} SCOP: b.45.1.2 PDB: 1usf_A*
Probab=22.47 E-value=14 Score=23.97 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=24.5
Q ss_pred CCCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 65 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
..||.|.+. +.--|+||..+|..|++++.++
T Consensus 45 ~~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnil~~~ 78 (178)
T 1usc_A 45 ADPPLFGVSISPKRFTHGLLLKARRFSASFHPFG 78 (178)
T ss_dssp TTTTEEEEEECTTSHHHHHHHHHCEEEEEECBGG
T ss_pred CCCCEEEEEECCCchHHHHHHHCCeEEEEeCCHH
Confidence 368888776 3456789999999999999764
No 91
>1i0r_A Conserved hypothetical protein; six stranded antiparallel beta-barrel, FMN and NADP+ binding domain, oxidoreductase; HET: FMN; 1.50A {Archaeoglobus fulgidus} SCOP: b.45.1.2 PDB: 1i0s_A*
Probab=22.16 E-value=14 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQW 96 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~W 96 (117)
.||.|.+. +.--|.||..+|..|+++|.++.
T Consensus 38 ~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~~ 71 (169)
T 1i0r_A 38 KPVQIAVCLNKENDTHNAVKESGAFGVSVLELET 71 (169)
T ss_dssp TTTEEEEEEETTSHHHHHHHHHSEEEEEEEBTTC
T ss_pred CCCEEEEEECCCchhHHHHHhCCEEEEEeCChhH
Confidence 68888776 34568899999999999997655
No 92
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=21.98 E-value=47 Score=23.69 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=20.0
Q ss_pred CCeEEEEeeCCCCCC------------------CCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 73 (117)
.|.|.|+=.+|.-|| ..||.|.|.
T Consensus 183 dG~y~F~TI~Pg~Yp~p~dGp~G~lL~~~grh~~RpaHIH~~ 224 (280)
T 3hhy_A 183 EGRYEITTIQPAPYQIPTDGPTGQFIEAQNGHPWRPAHLHLI 224 (280)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECSCEEEE
T ss_pred CceEEEEEECCcCcCCCCCCcHHHHHHhcCCCCCCCcEEEEE
Confidence 488999999998887 468888876
No 93
>3bnk_A Flavoredoxin; protein-FMN complex, electron transport; HET: FMN; 2.05A {Methanosarcina acetivorans}
Probab=21.93 E-value=20 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=23.9
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--++||..+|..|++++.++
T Consensus 43 ~PP~v~v~i~~~s~T~~~i~~~~~F~Vnil~~~ 75 (196)
T 3bnk_A 43 NPPMLGVGVNKSHYTPEGIAENGSFSVNFPYSG 75 (196)
T ss_dssp TTTEEEEEEETTSSHHHHHHHHTEEEEEECBGG
T ss_pred CCCEEEEEECCcchHHHHHHHCCeEEEEECCHH
Confidence 68888776 3556889999999999998754
No 94
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=21.53 E-value=1.5e+02 Score=18.24 Aligned_cols=29 Identities=7% Similarity=0.062 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEecCCCCc
Q 033535 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSI 33 (117)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~i~~~~~~~~~ 33 (117)
..+.|..||.++.+.+...++++......
T Consensus 32 lS~~Lid~La~i~~~~~e~fTle~i~s~~ 60 (122)
T 1u9d_A 32 LVPTLLNELSSLLSTARNAFTFELINTQY 60 (122)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEECCCCC
T ss_pred HhHHHHHHHHHHHCCCcccEEEEEeeeEE
Confidence 45778899999999999999988655443
No 95
>3e4v_A NADH:FMN oxidoreductase like protein; YP_544701.1, structural genomics, joint center for structural genom JCSG; HET: MSE FMN; 1.40A {Methylobacillus flagellatus KT}
Probab=21.26 E-value=21 Score=23.35 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=23.2
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--|.||..+|..|++++.++
T Consensus 46 ~PPlv~v~i~~~~~t~~~i~~~g~F~Vnvl~~~ 78 (186)
T 3e4v_A 46 EPPLVGAIIGPWDYSHQALSETGECVLAVPTVD 78 (186)
T ss_dssp TTTEEEEECCTTSTHHHHHHHHCEEEEEECCGG
T ss_pred CCCEEEEEEcChhHHHHHHHHCCeEEEEeCCHH
Confidence 67888775 3345789999999999999653
No 96
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=20.45 E-value=95 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=19.4
Q ss_pred CCeEEEEeeCCCCC------------------CCCCCeEEEe
Q 033535 50 GGTFKLTLQFTEDY------------------PNKPPTVRFV 73 (117)
Q Consensus 50 g~~~~~~i~fp~~Y------------------P~~pP~v~f~ 73 (117)
.|.|.|+=.+|.-| |..|+.|.|.
T Consensus 151 ~G~y~F~TI~P~~Ypip~dGp~g~ll~~~gr~~~RpaHIHf~ 192 (260)
T 3th1_A 151 QGNYRVRTTMPVPYQIPYEGPTGRLLGHLGSHTWRPAHVHFK 192 (260)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHTTCCSEECCEEEEE
T ss_pred CCEEEEEEECCCCCCCCCCCcHHHHHHhcCCCCCCCCeEEEE
Confidence 47899999999766 4568888886
No 97
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=20.18 E-value=40 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=24.4
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--|.||..+|.+|+++|.++
T Consensus 58 ~PPlv~v~i~~~s~T~~~i~~sg~F~VnvL~~~ 90 (321)
T 3rh7_A 58 DPPLLLVCLAKSSRNYESMTSAGRFAINVLSET 90 (321)
T ss_dssp TTTEEEEEEETTCSSHHHHHHCSEEEEEECBTT
T ss_pred CCCEEEEEECCcchHHHHHHhCCeEEEEECCHH
Confidence 68988776 3567889999999999999754
No 98
>1rz1_A Phenol 2-hydroxylase component B; flavin, NAD, oxidoreductase; HET: FAD NAD; 2.10A {Geobacillus thermoglucosidasius} SCOP: b.45.1.2 PDB: 1rz0_A*
Probab=20.16 E-value=17 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=23.6
Q ss_pred CCCeEEEe---ccCccccccCCCcEeecCCCCC
Q 033535 66 KPPTVRFV---SRMFHPNIYADGSICLDILQNQ 95 (117)
Q Consensus 66 ~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~~ 95 (117)
.||.|.+. +.--|.||..+|..|++++.++
T Consensus 42 ~Pp~v~v~i~~~s~T~~~i~~~~~F~Vnvl~~~ 74 (161)
T 1rz1_A 42 NPKLVLVSIGEKAKMLEKIQQSKKYAVNILSQD 74 (161)
T ss_dssp TTTEEEEEEETTCHHHHHHHHHCEEEEEECBGG
T ss_pred CCCEEEEEeCCCCchHHHHhhCCcEEEEECCHH
Confidence 67888775 3456889999999999999754
Done!