BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033537
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 1 MDAVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNE 60
MD V + + L DY+ SLF EGILD+QF LQQLQDESNPDFV++VV L+F+DS+R+LN+
Sbjct: 6 MDLVQK-QKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 64
Query: 61 ITVALDQQNVDFTKVGGHVHQLKGSSS 87
++++LDQQ VDF KV HVHQLKGSSS
Sbjct: 65 LSLSLDQQVVDFKKVDPHVHQLKGSSS 91
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing
Phosphotransfer Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 66/84 (78%)
Query: 4 VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITV 63
V ++ RQ VDY S+F EG LD QF LQQLQDE+NP+FV EVV+L+F DSER+L +++
Sbjct: 3 VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSF 62
Query: 64 ALDQQNVDFTKVGGHVHQLKGSSS 87
A+DQQ++DF KV HVHQ KGSS+
Sbjct: 63 AVDQQSIDFKKVDAHVHQFKGSSA 86
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 8/107 (7%)
Query: 3 AVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESN-PDFVAEVVNLYFKDSERLLNEI 61
A L QL +S+F +G++D QF LQ LQDE P FV+EVV L+ D++R++NEI
Sbjct: 2 AAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEI 61
Query: 62 TVALDQQNVDFTKVGGHVHQLKGSSS-------RFIFLHFIDLIESK 101
L+Q V+F KV +VHQLKGSS+ +F + F + K
Sbjct: 62 ATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDK 108
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 3 AVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQ-DESNPDFVAEVVNLYFKDSERLLNEI 61
A L QL +S+F G++D QF LQ LQ D P FVAEVV L+ D++R+++E+
Sbjct: 2 AAAALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISEL 61
Query: 62 TVALDQQNVDFTKVGGHVHQLKGSSS-------RFIFLHFIDLIESK 101
LDQ VDF KV +VHQLKGSS+ +F + F L + K
Sbjct: 62 AALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDK 108
>pdb|2VVY|A Chain A, Structure Of Vaccinia Virus Protein B14
pdb|2VVY|B Chain B, Structure Of Vaccinia Virus Protein B14
pdb|2VVY|C Chain C, Structure Of Vaccinia Virus Protein B14
pdb|2VVY|D Chain D, Structure Of Vaccinia Virus Protein B14
Length = 169
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 43 VAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGS-SSRFIFLHFIDLIESK 101
AE++ Y D ++ + EI+ + T GG H S ++ F+ L ++ ++
Sbjct: 103 CAEIIRCYIPDEQKTIREISAIIGLCAYAATYWGGEDHPTSNSLNALFVXLEXLNYVDYN 162
Query: 102 II 103
II
Sbjct: 163 II 164
>pdb|2XPN|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form I
pdb|2XPO|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Ii
pdb|2XPO|C Chain C, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Ii
pdb|2XPP|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Iii
Length = 145
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 17 SLFQEGILDNQFGHLQQLQDESNPDF 42
SL EGILD G L+ L D+S P+
Sbjct: 56 SLLDEGILDEIKGWLEPLPDKSMPNI 81
>pdb|2XPL|A Chain A, Crystal Structure Of Iws1(Spn1) Conserved Domain From
Encephalitozoon Cuniculi
pdb|2XPL|B Chain B, Crystal Structure Of Iws1(Spn1) Conserved Domain From
Encephalitozoon Cuniculi
Length = 148
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 17 SLFQEGILDNQFGHLQQLQDESNPDF 42
SL EGILD G L+ L D+S P+
Sbjct: 59 SLLDEGILDEIKGWLEPLPDKSMPNI 84
>pdb|1ZHH|B Chain B, Crystal Structure Of The Apo Form Of Vibrio Harveyi Luxp
Complexed With The Periplasmic Domain Of Luxq
Length = 242
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 19 FQEGILDNQFGHLQQLQDESNPDFVAEVVN 48
F +LDN F +++L+ ESN D V V N
Sbjct: 151 FNAVVLDNNFALMEKLKSESNVDNVVLVAN 180
>pdb|2HJ9|C Chain C, Crystal Structure Of The Autoinducer-2-Bound Form Of
Vibrio Harveyi Luxp Complexed With The Periplasmic
Domain Of Luxq
pdb|2HJ9|D Chain D, Crystal Structure Of The Autoinducer-2-Bound Form Of
Vibrio Harveyi Luxp Complexed With The Periplasmic
Domain Of Luxq
pdb|2HJE|A Chain A, Crystal Structure Of Vibrio Harveyi Luxq Periplasmic
Domain
Length = 221
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 19 FQEGILDNQFGHLQQLQDESNPDFVAEVVN 48
F +LDN F +++L+ ESN D V V N
Sbjct: 137 FNAVVLDNNFALMEKLKSESNVDNVVLVAN 166
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 13 DYSNSLFQEGILDNQFGHLQQLQD--ESNPDFVAEVVN---LYFKDSERLLNEITVALDQ 67
D S SLF E GHL +QD E V E VN LYF + T +D
Sbjct: 139 DISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDL 198
Query: 68 QNVDFTKVG 76
++++ +G
Sbjct: 199 YSINYLHLG 207
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 12 VDYSNSLFQEGILDNQFGHLQQLQD--ESNPDFVAEVVN---LYFKDSERLLNEITVALD 66
D S SLF E GHL +QD E V E VN LYF + T +D
Sbjct: 127 ADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMD 186
Query: 67 QQNVDFTKVG 76
++++ +G
Sbjct: 187 LYSINYLHLG 196
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 12 VDYSNSLFQEGILDNQFGHLQQLQD--ESNPDFVAEVVN---LYFKDSERLLNEITVALD 66
D S SLF E GHL +QD E V E VN LYF + T +D
Sbjct: 131 ADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMD 190
Query: 67 QQNVDFTKVG 76
++++ +G
Sbjct: 191 LYSINYLHLG 200
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 12 VDYSNSLFQEGILDNQFGHLQQLQD--ESNPDFVAEVVN---LYFKDSERLLNEITVALD 66
D S SLF E GHL +QD E V E VN LYF + T +D
Sbjct: 127 ADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMD 186
Query: 67 QQNVDFTKVG 76
++++ +G
Sbjct: 187 LYSINYLHLG 196
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 PDFVAEVVNLYFKDSERLLNEITVALDQQNVDFT----KVGGHVHQLKG 84
P + ++ Y D ER + I ++ Q DFT K+ GH+ +LKG
Sbjct: 279 PANIIKMKKCYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKG 327
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 40 PDFVAEVVNLYFKDSERLLNEITVALDQQNVDFT----KVGGHVHQLKG 84
P + ++ Y D ER + I ++ Q DFT K+ GH+ +LKG
Sbjct: 279 PANIIKMKKCYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKG 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,323,042
Number of Sequences: 62578
Number of extensions: 123162
Number of successful extensions: 399
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 21
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)