BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033537
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 1 MDAVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNE 60
MD V + + L DY+ SLF EGILD+QF LQQLQDESNPDFV++VV L+F+DS+R+LN+
Sbjct: 1 MDLVQK-QKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59
Query: 61 ITVALDQQNVDFTKVGGHVHQLKGSSS 87
++++LDQQ VDF KV HVHQLKGSSS
Sbjct: 60 LSLSLDQQVVDFKKVDPHVHQLKGSSS 86
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
Query: 1 MDA-VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLN 59
MD + +L R+ D++ SL+ +G LD+QF L++LQDE +PDFVAEVV L+F+D E+L++
Sbjct: 1 MDTLIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLIS 60
Query: 60 EITVALDQQ-NVDFTKVGGHVHQLKGSSS 87
+ ALDQ NVDF VG VHQLKGSSS
Sbjct: 61 NMARALDQTGNVDFKLVGSSVHQLKGSSS 89
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 4 VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITV 63
V +L RQ DY SL+Q+G LDNQF L++LQDE PDFVAEVV+L+F D +L+N +++
Sbjct: 6 VAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSI 65
Query: 64 ALDQ-QNVDFTKVGGHVHQLKGSSS 87
+L++ NVDF +V VHQLKGSSS
Sbjct: 66 SLERPDNVDFKQVDSGVHQLKGSSS 90
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 76/110 (69%), Gaps = 9/110 (8%)
Query: 1 MDA-VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLN 59
MDA + +L RQ DY+ SL+Q+G LD+QF L++LQD+ +PDFV+EV++L+F+D +L++
Sbjct: 1 MDALIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLIS 60
Query: 60 EITVALDQQN-VDFTKVGGHVHQLKGSSS-------RFIFLHFIDLIESK 101
+ ALD VDF++VG VHQLKGSSS + + + F + E+K
Sbjct: 61 NMARALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAK 110
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 8/107 (7%)
Query: 3 AVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESN-PDFVAEVVNLYFKDSERLLNEI 61
A L QL +S+F +G++D QF LQ LQDE P FV+EVV L+ D++R++NEI
Sbjct: 2 AAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEI 61
Query: 62 TVALDQQNVDFTKVGGHVHQLKGSSS-------RFIFLHFIDLIESK 101
L+Q V+F KV +VHQLKGSS+ +F + F + K
Sbjct: 62 ATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDK 108
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 50/67 (74%)
Query: 21 EGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVH 80
+G LD QF L++LQD++NP+FV EV LYFKDS RL+N I AL++ + DF ++ ++H
Sbjct: 9 QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68
Query: 81 QLKGSSS 87
Q KGSS+
Sbjct: 69 QFKGSST 75
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 3 AVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSER-LLNEI 61
V RL + SLF +G+LD QF LQQLQDE++P+FV +V+N+YF +SE+ L N
Sbjct: 5 GVDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLR 64
Query: 62 TVALDQQNVDFTKVGGHVHQLKGSSS 87
+ +D++ D+ K+G H++QL GSSS
Sbjct: 65 LLLMDREFSDYKKIGLHLNQLVGSSS 90
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1
Length = 277
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 50 YFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIESKIIVFF 106
+ + ER A D++ V TK+G V +K S I+L+ + + ES+II FF
Sbjct: 26 WQRPGERARTPGRKAEDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFF 82
>sp|Q8Y676|FMT_LISMO Methionyl-tRNA formyltransferase OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=fmt PE=3 SV=1
Length = 312
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 40 PDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHV-HQLKGSSS 87
PDF+A + +D E++ ++ +Q+ +D+TK G + +Q++G S
Sbjct: 181 PDFLAGKITATPQDPEKVTFARNISREQEKIDWTKPGRTIFNQIRGLSP 229
>sp|Q71YJ3|FMT_LISMF Methionyl-tRNA formyltransferase OS=Listeria monocytogenes serotype
4b (strain F2365) GN=fmt PE=3 SV=1
Length = 312
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 40 PDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHV-HQLKGSSS 87
PDF+A + +D E++ ++ +Q+ +D+TK G + +Q++G S
Sbjct: 181 PDFLAGKITAIPQDPEKVTFARNISREQEKIDWTKPGRTIFNQIRGLSP 229
>sp|C1KWC2|FMT_LISMC Methionyl-tRNA formyltransferase OS=Listeria monocytogenes serotype
4b (strain CLIP80459) GN=fmt PE=3 SV=1
Length = 312
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 40 PDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHV-HQLKGSSS 87
PDF+A + +D E++ ++ +Q+ +D+TK G + +Q++G S
Sbjct: 181 PDFLAGKITAIPQDPEKVTFARNISREQEKIDWTKPGRTIFNQIRGLSP 229
>sp|B8DDS9|FMT_LISMH Methionyl-tRNA formyltransferase OS=Listeria monocytogenes serotype
4a (strain HCC23) GN=fmt PE=3 SV=1
Length = 312
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 40 PDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHV-HQLKGSSS 87
PDF+A + +D E++ ++ +Q+ +D+TK G + +Q++G S
Sbjct: 181 PDFLAGKITAIPQDPEKVTFARNISREQEKIDWTKPGRTIFNQIRGLSP 229
>sp|B9DM98|GLMM_STACT Phosphoglucosamine mutase OS=Staphylococcus carnosus (strain TM300)
GN=glmM PE=3 SV=1
Length = 451
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 25 DNQFGHLQQLQDESNPDFVAEVVNL------YFKDSERLLNEITVALDQQNVDFTKVGGH 78
D+Q ++ L DE NPD V N YF+ +++ L+ I +D N+D K+
Sbjct: 123 DDQENEIEALLDEENPDLPRPVGNEIVHYSDYFEGAQKYLSYIKSTID-VNLDGLKIA-- 179
Query: 79 VHQLKGSSSRFIFLHFIDL 97
+ GS+S+ F DL
Sbjct: 180 LDGANGSTSQLAPFLFGDL 198
>sp|Q9HCG8|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22
PE=1 SV=3
Length = 908
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 25 DNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITV-ALDQQNVDFTKVGGHVHQLK 83
D+QF H+ L+D+ NP+ +V+N++ D + NE A+ ++ +D + Q
Sbjct: 363 DDQFTHMLPLEDDYNPE---DVLNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDA 419
Query: 84 GSS 86
GSS
Sbjct: 420 GSS 422
>sp|Q5RA93|CWC22_PONAB Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22
PE=2 SV=1
Length = 908
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 25 DNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITV-ALDQQNVDFTKVGGHVHQLK 83
D+QF H+ L+D+ NP+ +V+N++ D + NE A+ ++ +D + Q
Sbjct: 363 DDQFTHMLPLEDDYNPE---DVLNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDA 419
Query: 84 GSS 86
GSS
Sbjct: 420 GSS 422
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,535,582
Number of Sequences: 539616
Number of extensions: 1535702
Number of successful extensions: 5765
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5751
Number of HSP's gapped (non-prelim): 30
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)