Query 033537
Match_columns 117
No_of_seqs 104 out of 269
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 4.3E-31 1.5E-35 194.2 11.1 99 1-100 1-99 (153)
2 1yvi_A Histidine-containing ph 100.0 6E-29 2E-33 180.9 10.7 98 3-100 2-100 (149)
3 2r25_A Phosphorelay intermedia 99.9 3E-25 1E-29 166.8 8.6 82 17-100 2-84 (167)
4 2a0b_A HPT domain; sensory tra 99.7 1.7E-16 5.9E-21 110.9 7.6 78 18-100 6-84 (125)
5 1y6d_A Phosphorelay protein LU 99.7 1.3E-17 4.6E-22 117.5 2.0 73 26-100 12-84 (120)
6 2ooc_A Histidine phosphotransf 99.5 3.4E-14 1.2E-18 99.2 4.2 70 21-100 8-77 (113)
7 3myf_A Sensor protein; HPT, hi 99.4 1.8E-12 6.2E-17 91.1 7.8 62 37-100 16-77 (119)
8 3iqt_A Signal transduction his 99.3 3E-12 1E-16 90.7 5.7 62 37-100 25-86 (123)
9 1sr2_A Putative sensor-like hi 99.1 2.9E-11 9.8E-16 85.0 4.2 61 38-100 28-88 (116)
10 1tqg_A Chemotaxis protein CHEA 99.1 8.8E-11 3E-15 79.5 6.0 58 43-100 3-66 (105)
11 2lch_A Protein OR38; structura 98.9 1.3E-09 4.6E-14 74.8 5.6 57 44-100 5-67 (113)
12 2ld6_A Chemotaxis protein CHEA 98.9 1.6E-09 5.5E-14 77.4 6.0 57 44-100 3-65 (139)
13 1i5n_A Chemotaxis protein CHEA 98.8 2.1E-09 7.4E-14 77.4 4.5 55 44-98 6-66 (146)
14 3kyj_A CHEA3, putative histidi 98.5 1.3E-07 4.6E-12 68.3 5.9 58 43-100 9-72 (144)
15 2lp4_A Chemotaxis protein CHEA 98.1 4.3E-06 1.5E-10 63.6 5.5 57 44-100 6-68 (225)
16 2cw9_A Translocase of inner mi 77.4 6.7 0.00023 28.7 6.3 65 6-79 20-85 (194)
17 2di0_A Activating signal coint 76.0 2.7 9.1E-05 27.1 3.3 42 22-63 11-52 (71)
18 1gp8_A Protein (scaffolding pr 65.5 10 0.00035 21.8 3.9 15 70-84 24-38 (40)
19 2rg8_A Programmed cell death p 48.0 51 0.0018 23.4 6.1 51 4-54 6-57 (165)
20 3bvo_A CO-chaperone protein HS 47.3 55 0.0019 24.1 6.4 39 43-83 153-191 (207)
21 3uo3_A J-type CO-chaperone JAC 43.7 72 0.0025 23.0 6.4 44 38-83 118-161 (181)
22 3oj5_A Ferritin family protein 43.1 70 0.0024 22.5 6.2 75 20-95 98-177 (189)
23 2nsz_A Programmed cell death p 40.3 45 0.0015 22.6 4.6 48 5-52 4-52 (129)
24 3hho_A CO-chaperone protein HS 37.5 1.1E+02 0.0037 21.7 6.7 41 41-83 116-156 (174)
25 3o2t_A Symplekin; heat repeat, 37.2 1.7E+02 0.0057 23.8 10.0 47 20-66 57-110 (386)
26 1n69_A Saposin B; lipid bindin 35.8 76 0.0026 19.4 6.0 57 50-111 5-61 (81)
27 2p1h_A APAF-1, apoptotic prote 35.6 68 0.0023 20.0 4.6 63 12-78 25-88 (94)
28 2d28_C XPSE, type II secretion 33.2 20 0.00069 23.9 1.8 60 14-73 10-70 (149)
29 1ug3_A EIF4GI, eukaryotic prot 32.6 1.7E+02 0.0059 22.5 9.3 50 4-53 7-57 (339)
30 2ion_A PDCD4, programmed cell 32.3 68 0.0023 22.4 4.6 49 4-52 5-54 (152)
31 3do9_A UPF0302 protein BA_1542 27.7 59 0.002 24.0 3.7 28 55-84 152-179 (188)
32 1fpo_A HSC20, chaperone protei 27.4 1.6E+02 0.0056 20.7 6.0 37 45-83 116-152 (171)
33 2kjg_A Archaeal protein SSO690 27.2 78 0.0027 21.3 3.8 35 22-56 2-37 (99)
34 3tkl_B LIDA protein, substrate 27.1 1.8E+02 0.0061 22.6 6.4 60 27-90 67-126 (267)
35 3p8c_F ABL interactor 2; actin 26.9 8 0.00028 28.3 -1.2 77 4-85 59-157 (159)
36 4fla_A Regulation of nuclear P 25.5 1.8E+02 0.0062 20.6 8.3 22 4-25 41-62 (152)
37 1h3o_B Transcription initiatio 25.2 1.3E+02 0.0046 19.0 5.6 54 8-72 8-61 (76)
38 2f4m_B UV excision repair prot 25.0 87 0.003 19.1 3.5 37 26-63 11-47 (61)
39 2c41_A DPS family DNA-binding 25.0 1.4E+02 0.0046 20.2 5.0 22 43-64 95-116 (158)
40 3tnf_B LIDA, RAS-related prote 24.7 2.5E+02 0.0086 22.8 7.0 60 27-90 50-109 (384)
41 3l6a_A Eukaryotic translation 23.5 1.4E+02 0.0047 23.8 5.4 51 6-56 10-62 (364)
42 3zta_A MTR, anti-sigma-factor 23.2 1.8E+02 0.0062 20.1 5.3 41 43-89 83-123 (146)
43 3qk9_A Mitochondrial import in 23.1 44 0.0015 25.2 2.3 55 17-80 54-109 (222)
44 2zko_A NS1, NS1A, non-structur 22.5 77 0.0026 20.1 2.9 39 66-104 27-68 (73)
45 2gs4_A Protein YCIF; stress pr 21.8 1.8E+02 0.0061 20.6 5.3 59 6-67 5-64 (166)
46 3ls0_A SLL1638 protein, PSBQ; 21.5 1.1E+02 0.0038 21.5 4.0 32 51-84 32-64 (133)
47 3fx7_A Putative uncharacterize 21.5 1.9E+02 0.0063 19.2 4.9 63 4-66 11-80 (94)
48 2zu6_B Programmed cell death p 21.1 2.1E+02 0.0072 22.2 5.9 49 4-52 162-211 (307)
49 3euh_A Protein KICB, chromosom 21.0 2.1E+02 0.0073 24.0 6.1 15 71-85 245-259 (440)
50 1yke_B RNA polymerase II holoe 20.8 2.2E+02 0.0075 20.1 5.5 58 8-67 70-128 (151)
51 2oo2_A Hypothetical protein AF 20.6 1.6E+02 0.0055 19.1 4.4 46 1-58 1-46 (86)
52 2wx3_A MRNA-decapping enzyme 1 20.4 39 0.0013 20.3 1.2 24 38-61 26-49 (51)
53 2hsb_A Hypothetical UPF0332 pr 20.4 1.8E+02 0.0061 18.6 4.7 37 46-84 4-45 (126)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=99.97 E-value=4.3e-31 Score=194.20 Aligned_cols=99 Identities=53% Similarity=0.811 Sum_probs=95.8
Q ss_pred ChhHHHHHHHHHHHHhchhhcCchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhh
Q 033537 1 MDAVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVH 80 (117)
Q Consensus 1 ~~~~~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH 80 (117)
|+ +.+||+|+.+|++|++++|+||++|++|++|+++++|+|+.++|+.|++|+++.+..|+++++++++|+++++..+|
T Consensus 1 ~~-~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH 79 (153)
T 3us6_A 1 ME-VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH 79 (153)
T ss_dssp -C-HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 77 89999999999999999999999999999999999999999999999999999999999999987789999999999
Q ss_pred hhhhhHHHHhHHHHHHHHHH
Q 033537 81 QLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 81 ~LKGSSasiGA~~l~~lC~~ 100 (117)
+|||||+|+||.+|+++|+.
T Consensus 80 ~LKGss~~lGa~~l~~~c~~ 99 (153)
T 3us6_A 80 QFKGSSASIGAQRVKNSCVA 99 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHH
Confidence 99999999999999999986
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.96 E-value=6e-29 Score=180.86 Aligned_cols=98 Identities=43% Similarity=0.613 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHhchhhcCchhHHHHHHhhccccCC-hhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhh
Q 033537 3 AVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESN-PDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQ 81 (117)
Q Consensus 3 ~~~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~~-pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~ 81 (117)
|+++||+|++.+++|++++|+||.+|++|++|+++++ |+|+.+||++|++|+++++..|+.+++++++|+++++.++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~ 81 (149)
T 1yvi_A 2 AAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 5889999999999999999999977999999999999 999999999999999999999999999877899999999999
Q ss_pred hhhhHHHHhHHHHHHHHHH
Q 033537 82 LKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 82 LKGSSasiGA~~l~~lC~~ 100 (117)
|||||+||||.+|+++|+.
T Consensus 82 LKGssa~lGa~~l~~~c~~ 100 (149)
T 1yvi_A 82 LKGSSASVGAQKVKFTCMQ 100 (149)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHhHHHHHhHHHHHHHHHH
Confidence 9999999999999999975
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.92 E-value=3e-25 Score=166.78 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=77.5
Q ss_pred chhhcCchh-HHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHhHHHHH
Q 033537 17 SLFQEGILD-NQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFI 95 (117)
Q Consensus 17 sl~~egiLD-~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~ 95 (117)
||.++|+|| ++|++|++|++++ |+||.+||++|++|+++++.+|++|++ +++|+++++.++|+||||||||||.+|+
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~ 79 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIA 79 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 577899999 5899999999988 999999999999999999999999999 4479999999999999999999999999
Q ss_pred HHHHH
Q 033537 96 DLIES 100 (117)
Q Consensus 96 ~lC~~ 100 (117)
++|+.
T Consensus 80 ~~C~~ 84 (167)
T 2r25_A 80 WVCER 84 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.66 E-value=1.7e-16 Score=110.86 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=68.8
Q ss_pred hhhcCchh-HHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHhHHHHHH
Q 033537 18 LFQEGILD-NQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFID 96 (117)
Q Consensus 18 l~~egiLD-~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~ 96 (117)
+...+++| +.+.+|++. .+|+|+.+++..|++++++.+..|+.++.++ |+..+.+.+|+|||||+|+|+.+|+.
T Consensus 6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34556788 446676665 6899999999999999999999999999985 99999999999999999999999999
Q ss_pred HHHH
Q 033537 97 LIES 100 (117)
Q Consensus 97 lC~~ 100 (117)
+|..
T Consensus 81 ~~~~ 84 (125)
T 2a0b_A 81 LGQQ 84 (125)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9964
No 5
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.66 E-value=1.3e-17 Score=117.47 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=65.8
Q ss_pred HHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 26 NQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 26 ~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
.++.+|.+|+++.+|+++.++++.|++++++.|+.|+.+.+.+ |...+.+.+|+|||||+|+||.+|+++|..
T Consensus 12 ~d~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~ 84 (120)
T 1y6d_A 12 LNQQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIA 84 (120)
T ss_dssp TTTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHH
Confidence 3466888888889999999999999999999999999887664 777899999999999999999999999975
No 6
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.46 E-value=3.4e-14 Score=99.15 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=57.8
Q ss_pred cCchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 21 EGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 21 egiLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
.+.+| ++.|..+ ..|+|+|+.+|++.|++|+++.+..|+.+ +.|+ +..+|+|||||+||||.+|.++|..
T Consensus 8 ~~~iD--~~~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a----~~~~---~~~aH~LKGsA~~iGA~~l~~~c~~ 77 (113)
T 2ooc_A 8 SGAVD--FAYLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT----HPGW---KDAVHTVKGAARGVGAFNLGEVCER 77 (113)
T ss_dssp -CCSC--HHHHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT----STTH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcC--HHHHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh----hHHH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 45667 2344443 55899999999999999999999999887 2354 8999999999999999999999975
No 7
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.36 E-value=1.8e-12 Score=91.09 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=59.3
Q ss_pred cCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 37 ESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 37 ~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
.|+|++..+++.+|+++.++.+..|+.+++.+ |++.+...+|+|||||+++||.+|..+|+.
T Consensus 16 ~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~ 77 (119)
T 3myf_A 16 NHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLCQE 77 (119)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 47899999999999999999999999999986 999999999999999999999999999974
No 8
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.29 E-value=3e-12 Score=90.73 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=59.0
Q ss_pred cCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 37 ESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 37 ~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
.|+|++..+++.+|+++.++.+..|+++++.+ |++.+...+|+|||||+++||.+|..+|..
T Consensus 25 ~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 25 AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 47899999999999999999999999999986 888999999999999999999999999974
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.14 E-value=2.9e-11 Score=84.97 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=57.2
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 38 SNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 38 ~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
+.+..-.+++.+|++..++-+..|+++++++ |+..+...+|.||||++++|+.++.++|+.
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~ 88 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCET 88 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 5677788999999999999999999999986 999999999999999999999999999975
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.12 E-value=8.8e-11 Score=79.48 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc------CCCcHHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 43 VAEVVNLYFKDSERLLNEITVALDQ------QNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 43 v~elI~~Fl~Ds~~~l~~L~~al~~------~~~D~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
+.+++..|++++++.+..|+.++.+ ...++..+.+.+|+|||||+++|+..+.++|..
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~ 66 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHT 66 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHH
Confidence 4689999999999999999999851 123677999999999999999999999999964
No 11
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=98.93 E-value=1.3e-09 Score=74.83 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=48.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc---CCCc---HHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 44 AEVVNLYFKDSERLLNEITVALDQ---QNVD---FTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 44 ~elI~~Fl~Ds~~~l~~L~~al~~---~~~D---~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
.+++..|++++++++..|+.++.. ++.| ...+.+.+|+|||||+++|+..+.++|..
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~ 67 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHT 67 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHH
Confidence 489999999999999999998742 3333 45789999999999999999999999864
No 12
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=98.92 E-value=1.6e-09 Score=77.42 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=50.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc------CCCcHHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 44 AEVVNLYFKDSERLLNEITVALDQ------QNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 44 ~elI~~Fl~Ds~~~l~~L~~al~~------~~~D~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
.+++..|++++++.+..|+.++.+ +..++..+.+.+|+|||||+++|+..+.++|..
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~ 65 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHT 65 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHH
Confidence 478999999999999999999841 234678999999999999999999999999954
No 13
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=98.84 E-value=2.1e-09 Score=77.45 Aligned_cols=55 Identities=16% Similarity=0.367 Sum_probs=48.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc---CC---CcHHHHHHhhhhhhhhHHHHhHHHHHHHH
Q 033537 44 AEVVNLYFKDSERLLNEITVALDQ---QN---VDFTKVGGHVHQLKGSSSRFIFLHFIDLI 98 (117)
Q Consensus 44 ~elI~~Fl~Ds~~~l~~L~~al~~---~~---~D~~~l~~~aH~LKGSSasiGA~~l~~lC 98 (117)
.+++..|++++++.+..|+.++.+ ++ .++..+.+.+|+|||||+++|+..+.++|
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~la 66 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETT 66 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHH
Confidence 378999999999999999999832 22 24579999999999999999999999999
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=98.53 E-value=1.3e-07 Score=68.34 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh---cCCCc---HHHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 43 VAEVVNLYFKDSERLLNEITVALD---QQNVD---FTKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 43 v~elI~~Fl~Ds~~~l~~L~~al~---~~~~D---~~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
..+++..|++++++++..|+..+. +++.| ...+.+.+|+|||||+.+|...+.++|-.
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~ 72 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHL 72 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHH
Confidence 468999999999999999999864 34444 45788999999999999999999988864
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.09 E-value=4.3e-06 Score=63.61 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh---cCCCcH---HHHHHhhhhhhhhHHHHhHHHHHHHHHH
Q 033537 44 AEVVNLYFKDSERLLNEITVALD---QQNVDF---TKVGGHVHQLKGSSSRFIFLHFIDLIES 100 (117)
Q Consensus 44 ~elI~~Fl~Ds~~~l~~L~~al~---~~~~D~---~~l~~~aH~LKGSSasiGA~~l~~lC~~ 100 (117)
.++.+.|++++.++|..|+..+- +++.|- ..+.+.+|+|||||+.+|...+.++|-.
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~ 68 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHL 68 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHH
Confidence 36789999999999999999864 344554 4667899999999999999999998864
No 16
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=77.43 E-value=6.7 Score=28.67 Aligned_cols=65 Identities=14% Similarity=0.287 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhchhhcCchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHH-HHHHHHHHhcCCCcHHHHHHhh
Q 033537 6 RLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERL-LNEITVALDQQNVDFTKVGGHV 79 (117)
Q Consensus 6 ~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~-l~~L~~al~~~~~D~~~l~~~a 79 (117)
.+...+.+++.++|.+.=....+.++++.. |+|=. +.|++.++.. +..|..|..++ |.+.|+..+
T Consensus 20 ~~~~~~~~~~~~~f~~s~~~~~l~~i~~~d----p~Fd~---~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~ 85 (194)
T 2cw9_A 20 ALTDKVTDLLGGLFSKTEMSEVLTEILRVD----PAFDK---DRFLKQCENDIIPNVLEAMISG--ELDILKDWC 85 (194)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHHHHHC----TTCCH---HHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHB
T ss_pred hhhhhhhhhhccccCCCHHHHHHHHHHhhC----CCCCH---HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhc
Confidence 344566677778887776666688888884 55533 7899999998 69999999986 888888664
No 17
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=76.03 E-value=2.7 Score=27.07 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=36.5
Q ss_pred CchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHH
Q 033537 22 GILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITV 63 (117)
Q Consensus 22 giLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~ 63 (117)
.-+++...++++|-.+=+..||..++..|=.|.|+.++.|=+
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 346677899999999999999999999999999999977633
No 18
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=65.49 E-value=10 Score=21.80 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=13.9
Q ss_pred CcHHHHHHhhhhhhh
Q 033537 70 VDFTKVGGHVHQLKG 84 (117)
Q Consensus 70 ~D~~~l~~~aH~LKG 84 (117)
.||+.++.+=|+||+
T Consensus 24 Gd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 24 GDVETYRKLKAKLKG 38 (40)
T ss_dssp SCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHh
Confidence 599999999999996
No 19
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=47.95 E-value=51 Score=23.35 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhchhhcCchhHHHHHHhhcccc-CChhhHHHHHHHHHHhH
Q 033537 4 VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDE-SNPDFVAEVVNLYFKDS 54 (117)
Q Consensus 4 ~~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~-~~pdFv~elI~~Fl~Ds 54 (117)
.+.++.+....++-.|..|-+++....+++|..+ -.|.||..+|+.=++-.
T Consensus 6 ~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk 57 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGK 57 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCC
Confidence 4667888888888889999999999999999643 35777777777766544
No 20
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=47.29 E-value=55 Score=24.14 Aligned_cols=39 Identities=13% Similarity=0.365 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhh
Q 033537 43 VAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLK 83 (117)
Q Consensus 43 v~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LK 83 (117)
+.++-..+-..-++++.+|.++++.+ |+......+..||
T Consensus 153 l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 153 MKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 44454555555555667777777754 7777666666555
No 21
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=43.72 E-value=72 Score=22.97 Aligned_cols=44 Identities=9% Similarity=0.072 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhh
Q 033537 38 SNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLK 83 (117)
Q Consensus 38 ~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LK 83 (117)
.+.+=+.++-...-.....+...|.++++.+ |+......+..||
T Consensus 118 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 161 (181)
T 3uo3_A 118 DDEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK 161 (181)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 3433355565556666667777788888875 8877776666554
No 22
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=43.06 E-value=70 Score=22.50 Aligned_cols=75 Identities=8% Similarity=0.098 Sum_probs=32.8
Q ss_pred hcCchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhc----CCCcHHHHH-HhhhhhhhhHHHHhHHHH
Q 033537 20 QEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQ----QNVDFTKVG-GHVHQLKGSSSRFIFLHF 94 (117)
Q Consensus 20 ~egiLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~----~~~D~~~l~-~~aH~LKGSSasiGA~~l 94 (117)
.+..+...+.++.++-++.+..-...+++.|+++-++.+..++..+++ + .++-.++ .++-..++++++-||...
T Consensus 98 ~E~~~~~~~~~l~~~A~~~~D~~t~~~l~~~l~eqe~~~~~l~~~l~~l~~~g-~~l~~~d~~l~~~~~~~~~~~~~~~~ 176 (189)
T 3oj5_A 98 QERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVADRAG-ANLFELENFVAREVDVAPAASGAPHA 176 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHhHHHHHHHHhhCCCCCCCCCCcc
Confidence 333344444555555444444455666677888777777777776653 1 1122232 234556666677777765
Q ss_pred H
Q 033537 95 I 95 (117)
Q Consensus 95 ~ 95 (117)
+
T Consensus 177 ~ 177 (189)
T 3oj5_A 177 A 177 (189)
T ss_dssp -
T ss_pred c
Confidence 4
No 23
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.29 E-value=45 Score=22.57 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhchhhcCchhHHHHHHhhccccC-ChhhHHHHHHHHHH
Q 033537 5 TRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDES-NPDFVAEVVNLYFK 52 (117)
Q Consensus 5 ~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~-~pdFv~elI~~Fl~ 52 (117)
+.++.++..+++-.+.-|=+++...-+++|.-+. .++||.+.|..=++
T Consensus 4 eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE 52 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLE 52 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHc
Confidence 4677888888888888899999989999994221 24555555555555
No 24
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=37.46 E-value=1.1e+02 Score=21.71 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhh
Q 033537 41 DFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLK 83 (117)
Q Consensus 41 dFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LK 83 (117)
.-+.++-...-..-..++..|..+++.+ |+......+..||
T Consensus 116 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 156 (174)
T 3hho_A 116 AALVAFDTKVTAMQRHYLAQLQGQLAQS--EWLAAADQIRKLK 156 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 3455555566666667777777888765 7777666666655
No 25
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=37.24 E-value=1.7e+02 Score=23.79 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=24.0
Q ss_pred hcCchhHHHHHHhhccccCChh-------hHHHHHHHHHHhHHHHHHHHHHHHh
Q 033537 20 QEGILDNQFGHLQQLQDESNPD-------FVAEVVNLYFKDSERLLNEITVALD 66 (117)
Q Consensus 20 ~egiLD~qf~qL~~Lqd~~~pd-------Fv~elI~~Fl~Ds~~~l~~L~~al~ 66 (117)
+..++|+-|.+|.+++...+.+ |++|......+-+.+.+..|...++
T Consensus 57 dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~ 110 (386)
T 3o2t_A 57 DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLR 110 (386)
T ss_dssp CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666677777776554443 3333333333334444444544444
No 26
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=35.77 E-value=76 Score=19.41 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=39.8
Q ss_pred HHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHhHHHHHHHHHHhHHHHHHHHHH
Q 033537 50 YFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFIFLHFIDLIESKIIVFFYPILY 111 (117)
Q Consensus 50 Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lC~~~~~~~~~~~~~ 111 (117)
-+..++..++.++..+.++ -.......|.|..-.+.+| ..++..|..-+-. +.|++.
T Consensus 5 ~C~~C~~~V~~ve~~l~~n---~t~~~~I~~~l~~~C~~lp-~~~~~~C~~~V~~-y~~~ii 61 (81)
T 1n69_A 5 VCQDCIQMVTDIQTAVRTN---STFVQALVEHVKEECDRLG-PGMADICKNYISQ-YSEIAI 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTHHHHHHHHHHHHGGGGC-TTHHHHHHHHHHH-HHHHHH
T ss_pred cchHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHH-HHHHHH
Confidence 3567778888888888763 2233566688888888998 4589999875544 445443
No 27
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.64 E-value=68 Score=20.02 Aligned_cols=63 Identities=10% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHHhchhhcCchhHH-HHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHh
Q 033537 12 VDYSNSLFQEGILDNQ-FGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGH 78 (117)
Q Consensus 12 ~~~~~sl~~egiLD~q-f~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~ 78 (117)
..++..+...|++.+. .+.++.- .+.++=+.++++.-..-++.-...+-.+|.+. ++..+...
T Consensus 25 ~~lld~L~~~~vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~ 88 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEEEKVRNE--PTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAAL 88 (94)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHH
Confidence 3455555666777633 5555553 34567777777777777777777777777653 55455443
No 28
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=33.21 E-value=20 Score=23.94 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=43.2
Q ss_pred HHhchhhcCchh-HHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHH
Q 033537 14 YSNSLFQEGILD-NQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFT 73 (117)
Q Consensus 14 ~~~sl~~egiLD-~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~ 73 (117)
+-.-+.+.|+|+ +++.+..+.+...+..+..-+++.-+-+.+++.+.+.+.+.-+.+|..
T Consensus 10 lg~~Lv~~g~it~~ql~~al~~~~~~g~~l~~~L~~~g~i~e~~l~~~la~~~g~p~v~l~ 70 (149)
T 2d28_C 10 IVEALLERRRLKDTDLVRARQLQAESGMGLLALLGRLGLVSERDHAETCAEVLGLPLVDAR 70 (149)
T ss_dssp HHHHHHHTTSSCHHHHHHCCC---CCSCCHHHHHHHTTCSCHHHHHHHHHHHHTCCBCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHhhCCceecch
Confidence 344467789999 668877777766666688888888888889999998888776555544
No 29
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.56 E-value=1.7e+02 Score=22.55 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhchhhcCchhHHHHHHhhcccc-CChhhHHHHHHHHHHh
Q 033537 4 VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDE-SNPDFVAEVVNLYFKD 53 (117)
Q Consensus 4 ~~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~-~~pdFv~elI~~Fl~D 53 (117)
.+.++.+...+++-.+..|=+++...-+++|..+ -.|+||..+|+..++-
T Consensus 7 ~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~ 57 (339)
T 1ug3_A 7 EEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLER 57 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCC
Confidence 5678889999999989999999999999999644 2467777777777765
No 30
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.33 E-value=68 Score=22.43 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhchhhcCchhHHHHHHhhccccC-ChhhHHHHHHHHHH
Q 033537 4 VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDES-NPDFVAEVVNLYFK 52 (117)
Q Consensus 4 ~~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~-~pdFv~elI~~Fl~ 52 (117)
.+.++.++..+++-.+.-|=+++...-+++|.-+. .|+||.+.|.+=++
T Consensus 5 ~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE 54 (152)
T 2ion_A 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLE 54 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 35678888889999888899999999999995322 24555555555555
No 31
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=27.69 E-value=59 Score=23.99 Aligned_cols=28 Identities=43% Similarity=0.447 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHhhhhhhh
Q 033537 55 ERLLNEITVALDQQNVDFTKVGGHVHQLKG 84 (117)
Q Consensus 55 ~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 84 (117)
+++..+|.+||+.+ |-+.+.++...||-
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~ 179 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKM 179 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 56789999999986 88999999888874
No 32
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=27.38 E-value=1.6e+02 Score=20.72 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhh
Q 033537 45 EVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLK 83 (117)
Q Consensus 45 elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LK 83 (117)
++-...-..-..+..+|..+++.+ |+......+..||
T Consensus 116 ~l~~~~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~kl~ 152 (171)
T 1fpo_A 116 SFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR 152 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC--cHHHHHHHHHHHH
Confidence 333333333334455555666543 6665555554444
No 33
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=27.17 E-value=78 Score=21.27 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=24.3
Q ss_pred Cchh-HHHHHHhhccccCChhhHHHHHHHHHHhHHH
Q 033537 22 GILD-NQFGHLQQLQDESNPDFVAEVVNLYFKDSER 56 (117)
Q Consensus 22 giLD-~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~ 56 (117)
.+|| +.|.+|+.+..--+.+-|+.+++.--.|..+
T Consensus 2 SvLdqeEFveLrkfKgkvd~~~v~~IL~eiE~~~rk 37 (99)
T 2kjg_A 2 SILEDPEFVKLRQFKGKVNFNLVMQILDEIELDLRG 37 (99)
T ss_dssp CSCSCHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 3678 6699999998766776666666655555444
No 34
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=27.12 E-value=1.8e+02 Score=22.57 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=41.6
Q ss_pred HHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHh
Q 033537 27 QFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFI 90 (117)
Q Consensus 27 qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiG 90 (117)
.|.++....++.+|+=+.+.|.-|-.+++++- +.+++.+.|=...+.+.|.=||.-..+-
T Consensus 67 eF~~~sd~yeal~~e~ine~i~~~~~~se~~T----~imEs~p~DeeEa~kLlhKh~~~~~Kla 126 (267)
T 3tkl_B 67 GFEKLLTDSEELSLSEINEKMKAFSKDSEKLT----QLMEKHKGDEKTVQSLQREHHDIKAKLA 126 (267)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHHHHHH----HHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhhhcCHHHHHHHHHHHHhhhHHHH----HHHhcCcccHHHHHHHHHHhcccchhhh
Confidence 36777777778899999999999999988754 3344456799999999999888776553
No 35
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=26.85 E-value=8 Score=28.34 Aligned_cols=77 Identities=17% Similarity=0.297 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhchhhcCchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHH-HHHH---------------------
Q 033537 4 VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERL-LNEI--------------------- 61 (117)
Q Consensus 4 ~~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~-l~~L--------------------- 61 (117)
.+..--|++++-..+. .+||.|-.+++.|. ..-+-+...|.++.+-..++ |..+
T Consensus 59 LaSVAyqIn~lA~~ll--~lLd~Q~~~l~~me--s~v~~l~Q~v~ih~EKvaRreIg~lT~~k~~~r~~kii~p~~~e~~ 134 (159)
T 3p8c_F 59 LASVAYLINTLANNVL--QMLDIQASQLRRME--SSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANLERP 134 (159)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCCCCSEECCSSCCCC
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcCcccCCCCCCCC
Confidence 3444455666555554 47888888888884 44567888899988876664 1111
Q ss_pred HHHHhcCCCcHHHHHHhhhhhhhh
Q 033537 62 TVALDQQNVDFTKVGGHVHQLKGS 85 (117)
Q Consensus 62 ~~al~~~~~D~~~l~~~aH~LKGS 85 (117)
.+.. ..|.||.-++...|-.|++
T Consensus 135 ~~Y~-R~pI~y~~LD~iGhGvk~~ 157 (159)
T 3p8c_F 135 VRYI-RKPIDYTILDDIGHGVKVS 157 (159)
T ss_dssp CCCC-CCCCCTTTTTTTTTCCCC-
T ss_pred CCCc-cCCCchHhhcCCCcCcccC
Confidence 1111 2468999999999998843
No 36
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.55 E-value=1.8e+02 Score=20.55 Aligned_cols=22 Identities=5% Similarity=0.240 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhchhhcCchh
Q 033537 4 VTRLHRQLVDYSNSLFQEGILD 25 (117)
Q Consensus 4 ~~~l~~ql~~~~~sl~~egiLD 25 (117)
.++.|+++..+...+.+..+|+
T Consensus 41 Da~vrq~Ia~LP~eVsd~s~l~ 62 (152)
T 4fla_A 41 DATVRQKIASLPQEVQDVSLLE 62 (152)
T ss_dssp HHHHHHHHHTSCGGGTCGGGGG
T ss_pred hHHHHHHHHcCCccccCHHHHH
Confidence 4778999999999999988888
No 37
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=25.24 E-value=1.3e+02 Score=18.99 Aligned_cols=54 Identities=9% Similarity=0.196 Sum_probs=34.9
Q ss_pred HHHHHHHHhchhhcCchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcH
Q 033537 8 HRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDF 72 (117)
Q Consensus 8 ~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~ 72 (117)
+++|..+++.......+| ++-.+++.++.+.|.++.-..--.+.+--....++.
T Consensus 8 k~~L~~Lv~~idp~~~ld-----------~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~ 61 (76)
T 1h3o_B 8 KKKLQDLVREVDPNEQLD-----------EDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEV 61 (76)
T ss_dssp HHHHHHHHHHHCSSCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECH
T ss_pred HHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH
Confidence 456667777664443344 234677888888888888887777777655543343
No 38
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=24.97 E-value=87 Score=19.09 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=27.9
Q ss_pred HHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHH
Q 033537 26 NQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITV 63 (117)
Q Consensus 26 ~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~ 63 (117)
.+|.+++++-.. ||+.+..++..--..-+++++-|.+
T Consensus 11 Pqf~~lR~~vq~-NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 11 PQFQQMRQIIQQ-NPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHHHH-CGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHH-CHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 468999988554 8999888888877777777765543
No 39
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=24.97 E-value=1.4e+02 Score=20.19 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 033537 43 VAEVVNLYFKDSERLLNEITVA 64 (117)
Q Consensus 43 v~elI~~Fl~Ds~~~l~~L~~a 64 (117)
+.+++..-+++=+..+..++++
T Consensus 95 ~~e~l~~~l~~e~~~~~~~~~~ 116 (158)
T 2c41_A 95 VKQMIEEAIANHELIITEMHQD 116 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 40
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=24.72 E-value=2.5e+02 Score=22.76 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=48.2
Q ss_pred HHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHHh
Q 033537 27 QFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRFI 90 (117)
Q Consensus 27 qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasiG 90 (117)
.|.++....++.+|+=+.+.|..|-.+++++ .+.+++.|.|=...+.+.|.=+|.-..+-
T Consensus 50 eF~~~sd~yeal~~e~ine~ie~l~~~~e~~----T~imEs~p~DeeEa~kLlhKh~~~~~Kla 109 (384)
T 3tnf_B 50 GFEKLLTDSEELSLSEINEKMEAFSKDSEKL----TQLMEKHKGDEKTVQSLQREHHDIKAKLA 109 (384)
T ss_dssp TSHHHHTTCCCCCHHHHHHHHHHHHHHHHHH----HHHHTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhhhcCHHHHHHHHHHHHhhhHHH----HHHHhcCcccHHHHHHHHHhhcccchhhh
Confidence 3777778888889999999999998887754 45566678899999999999888776553
No 41
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.48 E-value=1.4e+02 Score=23.76 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhchhhcCchhHHHHHHhhccccC--ChhhHHHHHHHHHHhHHH
Q 033537 6 RLHRQLVDYSNSLFQEGILDNQFGHLQQLQDES--NPDFVAEVVNLYFKDSER 56 (117)
Q Consensus 6 ~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~--~pdFv~elI~~Fl~Ds~~ 56 (117)
.|-.+...+++-.+..|=+++...-+++|.-++ .|.||..+|+..++-+++
T Consensus 10 ~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~ 62 (364)
T 3l6a_A 10 ELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDE 62 (364)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChH
Confidence 344556666677777788888899999996553 367888888888865443
No 42
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=23.24 E-value=1.8e+02 Score=20.15 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCcHHHHHHhhhhhhhhHHHH
Q 033537 43 VAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSRF 89 (117)
Q Consensus 43 v~elI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSasi 89 (117)
++.+++.|++-..+.--++..+.. -...+| -|-+||.|--+
T Consensus 83 lekildsfisvireqyhdlqaaas----yittvr--dhifkgtsfll 123 (146)
T 3zta_A 83 LEKILDSFISVIREQYHDLQAAAS----YITTVR--DHIFKGTSFLL 123 (146)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHH----HHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHhcchHHHH
Confidence 345555555544444444443322 122333 37889988643
No 43
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=23.14 E-value=44 Score=25.16 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=29.9
Q ss_pred chhhcCchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHH-HHHHHHHHhcCCCcHHHHHHhhh
Q 033537 17 SLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERL-LNEITVALDQQNVDFTKVGGHVH 80 (117)
Q Consensus 17 sl~~egiLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~-l~~L~~al~~~~~D~~~l~~~aH 80 (117)
++|.+.=+...+.+++++ +|+|-. +.|+++++.- +..+-.|..++ |.+.|+..++
T Consensus 54 ~~f~~te~a~~l~~Ik~~----DPsF~~---~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~lls 109 (222)
T 3qk9_A 54 GFFAETESSRVYSQFKLM----DPTFSN---ESFTRHLREYIVPEILEAYVKG--DVKVLKKWFS 109 (222)
T ss_dssp ------CCHHHHTTCC---------CCH---HHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBC
T ss_pred cccCCCHHHHHHHHHHHh----CCCCCH---HHHHHHHHHHHHHHHHHHHHcC--CHHHHHhhcC
Confidence 345554455556666666 455543 5777888777 45677887776 8888887654
No 44
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=22.46 E-value=77 Score=20.07 Aligned_cols=39 Identities=23% Similarity=0.147 Sum_probs=26.6
Q ss_pred hcCCCcHH---HHHHhhhhhhhhHHHHhHHHHHHHHHHhHHH
Q 033537 66 DQQNVDFT---KVGGHVHQLKGSSSRFIFLHFIDLIESKIIV 104 (117)
Q Consensus 66 ~~~~~D~~---~l~~~aH~LKGSSasiGA~~l~~lC~~~~~~ 104 (117)
+++-.|.+ ++++---+|||-++.+|..-=.+.++-|-||
T Consensus 27 dq~lgDAPFldRlrRDQksLrGrgsTLgldie~at~~GkqIv 68 (73)
T 2zko_A 27 DQELGDAPFLDRLRRDQKSLRGRGSTLGLDIETATRAGKQIV 68 (73)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHhHHHhccCCcccccchHHHHHHHHHHH
Confidence 33344544 6677778999999999976555555555554
No 45
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=21.78 E-value=1.8e+02 Score=20.63 Aligned_cols=59 Identities=7% Similarity=0.227 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhchhhcCchhHH-HHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhc
Q 033537 6 RLHRQLVDYSNSLFQEGILDNQ-FGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQ 67 (117)
Q Consensus 6 ~l~~ql~~~~~sl~~egiLD~q-f~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~ 67 (117)
.|++-+...++.++. .+.| ..-|..+-..-+..=+...++.+++++++.+..|++.++.
T Consensus 5 ~l~dlf~~~L~D~y~---aE~q~~~al~~~~~~a~~p~Lk~~l~~h~~eT~~qi~rLe~i~~~ 64 (166)
T 2gs4_A 5 TIEDVFIHLLSDTYS---AEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVES 64 (166)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444432 2333 3344455443333445677899999999999999999876
No 46
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=21.54 E-value=1.1e+02 Score=21.52 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=24.7
Q ss_pred HHhHHHHHHH-HHHHHhcCCCcHHHHHHhhhhhhh
Q 033537 51 FKDSERLLNE-ITVALDQQNVDFTKVGGHVHQLKG 84 (117)
Q Consensus 51 l~Ds~~~l~~-L~~al~~~~~D~~~l~~~aH~LKG 84 (117)
+.++.+++.+ |...++++ |....|...|.-=|
T Consensus 32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg 64 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLG 64 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTT
T ss_pred HHHHHHHhHHHHHHHhhhc--chHHHHHHHhchHH
Confidence 4567788888 88888875 88888888885443
No 47
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=21.46 E-value=1.9e+02 Score=19.23 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhchhhc-CchhHHHHHHhhccccCChhhHH------HHHHHHHHhHHHHHHHHHHHHh
Q 033537 4 VTRLHRQLVDYSNSLFQE-GILDNQFGHLQQLQDESNPDFVA------EVVNLYFKDSERLLNEITVALD 66 (117)
Q Consensus 4 ~~~l~~ql~~~~~sl~~e-giLD~qf~qL~~Lqd~~~pdFv~------elI~~Fl~Ds~~~l~~L~~al~ 66 (117)
+...-.+|.+|...+-++ +=|..+|..|..=||..-..|.+ +.+..|.+.+++.+.-|++.+.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 334455666666666444 44667777776555544444433 3566777778777777766654
No 48
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.05 E-value=2.1e+02 Score=22.17 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhchhhcCchhHHHHHHhhccccC-ChhhHHHHHHHHHH
Q 033537 4 VTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDES-NPDFVAEVVNLYFK 52 (117)
Q Consensus 4 ~~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~-~pdFv~elI~~Fl~ 52 (117)
...++.++..+++-.+.-|=++|...-+++|.-+. .|+||.+.|.+-++
T Consensus 162 ~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE 211 (307)
T 2zu6_B 162 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLE 211 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 56788888899988888898898888999994321 24455555555555
No 49
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=20.96 E-value=2.1e+02 Score=23.95 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=8.4
Q ss_pred cHHHHHHhhhhhhhh
Q 033537 71 DFTKVGGHVHQLKGS 85 (117)
Q Consensus 71 D~~~l~~~aH~LKGS 85 (117)
+...++..++.|.+.
T Consensus 245 ~l~~vd~l~~~Lq~k 259 (440)
T 3euh_A 245 DLHFVDRLVFDLQSK 259 (440)
T ss_dssp SCGGGTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 445556666665554
No 50
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.81 E-value=2.2e+02 Score=20.08 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=42.8
Q ss_pred HHHHHHHHhchhhcCch-hHHHHHHhhccccCChhhHHHHHHHHHHhHHHHHHHHHHHHhc
Q 033537 8 HRQLVDYSNSLFQEGIL-DNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLLNEITVALDQ 67 (117)
Q Consensus 8 ~~ql~~~~~sl~~egiL-D~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l~~L~~al~~ 67 (117)
-+|+..++.++-..+.= ++|...|++|+.+ +. -+.+-...-.+.++++++.++.++..
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E-~~-~~~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKK-LV-EVEDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999998766543 3779999999755 33 34445556678899999999888774
No 51
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=20.65 E-value=1.6e+02 Score=19.09 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHHHHhchhhcCchhHHHHHHhhccccCChhhHHHHHHHHHHhHHHHH
Q 033537 1 MDAVTRLHRQLVDYSNSLFQEGILDNQFGHLQQLQDESNPDFVAEVVNLYFKDSERLL 58 (117)
Q Consensus 1 ~~~~~~l~~ql~~~~~sl~~egiLD~qf~qL~~Lqd~~~pdFv~elI~~Fl~Ds~~~l 58 (117)
|+..+.|++++.++...+.+ . |.++.. -.=+.+++..|++|++.-+
T Consensus 1 ~~~~~~L~Eki~kYi~~l~e------a---L~~i~~---a~~~l~mA~~Y~~Da~~fl 46 (86)
T 2oo2_A 1 MSLEEELRRETLKWLERIEE------R---VKEIEG---DEGFMRNIEAYISDSRYFL 46 (86)
T ss_dssp -CHHHHHHHHHHHHHHHHHH------H---GGGEEE---CHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH------H---HHHhhh---HHHHHHHHHHHHHHHHHHH
Confidence 55567788888887765543 2 223321 3445678889999987765
No 52
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=20.41 E-value=39 Score=20.31 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=16.3
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHH
Q 033537 38 SNPDFVAEVVNLYFKDSERLLNEI 61 (117)
Q Consensus 38 ~~pdFv~elI~~Fl~Ds~~~l~~L 61 (117)
.+++|+..+-+-|+....+.+.++
T Consensus 26 nD~~Fl~~IHeAYl~sl~~~~~n~ 49 (51)
T 2wx3_A 26 NDSSFLSTLHEVYLQVLTKNKDNH 49 (51)
T ss_dssp HCHHHHHHHHHHHHHTTC------
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcc
Confidence 579999999999999887776554
No 53
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=20.36 E-value=1.8e+02 Score=18.60 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcCCCcHHHH-----HHhhhhhhh
Q 033537 46 VVNLYFKDSERLLNEITVALDQQNVDFTKV-----GGHVHQLKG 84 (117)
Q Consensus 46 lI~~Fl~Ds~~~l~~L~~al~~~~~D~~~l-----~~~aH~LKG 84 (117)
.+..+++.+++.|..-+..++.+ +|..- ...-|.+|+
T Consensus 4 ~~~~~l~~A~~~L~~A~~~~~~g--~y~~a~~~ay~a~~~alKA 45 (126)
T 2hsb_A 4 ELELRIRKAEKLVQDAKKEFEMG--LYERCCSTAYYAMFHAAKA 45 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888877775 44422 444455555
Done!