BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033538
MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE
AQRVKAKKEKLDKKRKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ

High Scoring Gene Products

Symbol, full name Information P value
AT3G09630 protein from Arabidopsis thaliana 2.0e-31
AT5G02870 protein from Arabidopsis thaliana 6.9e-31

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033538
        (117 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2074904 - symbol:AT3G09630 species:3702 "Arabi...   345  2.0e-31   1
TAIR|locus:2151296 - symbol:AT5G02870 species:3702 "Arabi...   340  6.9e-31   1


>TAIR|locus:2074904 [details] [associations]
            symbol:AT3G09630 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
            [GO:0009507 "chloroplast" evidence=IDA] [GO:0005773 "vacuole"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0022626
            "cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0022625 "cytosolic large
            ribosomal subunit" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0001510
            "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR002136
            InterPro:IPR023574 Pfam:PF00573 GO:GO:0005886 GO:GO:0009506
            GO:GO:0005618 GO:GO:0009507 GO:GO:0005773 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0006412 EMBL:AC016661
            GO:GO:0003735 GO:GO:0022625 eggNOG:COG0088 Gene3D:3.40.1370.10
            SUPFAM:SSF52166 EMBL:AY056781 EMBL:BT002438 EMBL:BT008495
            IPI:IPI00542248 RefSeq:NP_187574.1 UniGene:At.24636
            ProteinModelPortal:Q9SF40 SMR:Q9SF40 IntAct:Q9SF40 STRING:Q9SF40
            PaxDb:Q9SF40 PRIDE:Q9SF40 EnsemblPlants:AT3G09630.1 GeneID:820120
            KEGG:ath:AT3G09630 GeneFarm:380 TAIR:At3g09630 HOGENOM:HOG000107331
            InParanoid:Q9SF40 KO:K02930 OMA:HTNMRKN PhylomeDB:Q9SF40
            ProtClustDB:PLN00185 Genevestigator:Q9SF40 InterPro:IPR025755
            InterPro:IPR013000 Pfam:PF14374 PROSITE:PS00939 Uniprot:Q9SF40
        Length = 406

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 72/117 (61%), Positives = 81/117 (69%)

Query:     1 MVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAE 60
             MVNADLARIINSDE+QSVV PIK + KRA                  YAKTA+RMSLLAE
Sbjct:   290 MVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAE 349

Query:    61 AQRVXXXXXXXXXXXXPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 117
             AQRV             +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:   350 AQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406


>TAIR|locus:2151296 [details] [associations]
            symbol:AT5G02870 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
            [GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0005773 "vacuole" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0022626 "cytosolic
            ribosome" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0022625 "cytosolic large
            ribosomal subunit" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0001510
            "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR002136
            InterPro:IPR023574 Pfam:PF00573 GO:GO:0005886 GO:GO:0009506
            GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507
            GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 EMBL:AL162973
            GO:GO:0022625 eggNOG:COG0088 Gene3D:3.40.1370.10 SUPFAM:SSF52166
            HOGENOM:HOG000107331 KO:K02930 ProtClustDB:PLN00185
            InterPro:IPR025755 InterPro:IPR013000 Pfam:PF14374 PROSITE:PS00939
            EMBL:AY054479 EMBL:AY059886 EMBL:AY062452 EMBL:AY093384
            EMBL:AY114639 EMBL:AY136320 EMBL:BT002088 EMBL:Z18118 EMBL:Z18460
            EMBL:Z17589 IPI:IPI00521292 PIR:T48308 RefSeq:NP_195907.1
            UniGene:At.21294 ProteinModelPortal:P49691 SMR:P49691 IntAct:P49691
            STRING:P49691 PaxDb:P49691 PRIDE:P49691 ProMEX:P49691
            EnsemblPlants:AT5G02870.1 GeneID:831756 KEGG:ath:AT5G02870
            GeneFarm:381 TAIR:At5g02870 InParanoid:P49691 OMA:HRRVNIT
            PhylomeDB:P49691 Genevestigator:P49691 GermOnline:AT5G02870
            Uniprot:P49691
        Length = 407

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 74/117 (63%), Positives = 79/117 (67%)

Query:     1 MVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAE 60
             MVNADLARIINSDEVQSVV PIK   KRA                  YAKTA+RMSLLAE
Sbjct:   291 MVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAE 350

Query:    61 AQRVXXXXXXXXXXXXPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 117
             A RV             +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:   351 ASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.124   0.338    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117        87   0.00091  102 3  10 23  0.46    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.15u 0.10s 9.25t   Elapsed:  00:00:00
  Total cpu time:  9.15u 0.10s 9.25t   Elapsed:  00:00:00
  Start:  Mon May 20 23:31:40 2013   End:  Mon May 20 23:31:40 2013

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