BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033538
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1
Length = 408
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/117 (85%), Positives = 111/117 (94%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
MVNADLARIINSDEVQSVV PI+ KRAP+KKNPL+ LNT+L+LNPYAKTARRMSLLAE
Sbjct: 292 MVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAE 351
Query: 61 AQRVKAKKEKLDKKRKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 117
A+RVKAKKEKLDKKRKPI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct: 352 AERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
>sp|Q9SF40|RL4A_ARATH 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2
SV=1
Length = 406
Score = 178 bits (451), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/117 (82%), Positives = 108/117 (92%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
MVNADLARIINSDE+QSVV PIK + KRA +KKNPLKNLN +L+LNPYAKTA+RMSLLAE
Sbjct: 290 MVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAE 349
Query: 61 AQRVKAKKEKLDKKRKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 117
AQRVKAKKEKL KKRK +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct: 350 AQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
>sp|P49691|RL4B_ARATH 60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1
SV=2
Length = 407
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/117 (82%), Positives = 106/117 (90%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
MVNADLARIINSDEVQSVV PIK KRA +KKNPLKNLN + +LNPYAKTA+RMSLLAE
Sbjct: 291 MVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAE 350
Query: 61 AQRVKAKKEKLDKKRKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 117
A RVKAKKEKL+KKRK +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct: 351 ASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B OS=Xenopus laevis GN=rpl4-b PE=2 SV=2
Length = 401
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M N DL RI+ S E+Q +R +VKR +KKNPLKNL ++RLNPYAKTARR ++L +
Sbjct: 288 MTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQ 347
Query: 61 AQRVKAKKEKLD----KKRKPI 78
+ +KAK++K D K +KP+
Sbjct: 348 LENIKAKEKKPDDGKPKAKKPL 369
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-a PE=2 SV=2
Length = 396
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M N DL RI+ S E+Q +R +VKR +KKNPLKNL ++RLNPYAKTARR ++L +
Sbjct: 288 MTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQ 347
Query: 61 AQRVKAKKEKLD----KKRKPI 78
+ +KAK++K D K +KP+
Sbjct: 348 LENIKAKEKKPDDGKPKAKKPL 369
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5
Length = 427
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 50/70 (71%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL +L+LNPYAKT RR ++L +
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 61 AQRVKAKKEK 70
A+ K + +K
Sbjct: 344 ARNHKLRVDK 353
>sp|Q5RCR3|RL4_PONAB 60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1
Length = 427
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 50/70 (71%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL +L+LNPYAKT RR ++L +
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 61 AQRVKAKKEK 70
A+ K + +K
Sbjct: 344 ARNHKLRVDK 353
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3
Length = 422
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 50/70 (71%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL +L+LNPYAKT RR ++L +
Sbjct: 284 MLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 61 AQRVKAKKEK 70
A+ K + +K
Sbjct: 344 ARNHKIRMDK 353
>sp|P50878|RL4_RAT 60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3
Length = 421
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL +L+LNPYAKT RR ++L +
Sbjct: 284 MMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 61 AQ 62
A+
Sbjct: 344 AR 345
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3
Length = 419
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL +L+LNPYAKT RR ++L +
Sbjct: 284 MMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 61 AQ 62
A+
Sbjct: 344 AR 345
>sp|P49165|RL4_URECA 60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1
Length = 386
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M N DL+R++ SDE+Q+ +R K + R KKNPLKN ++RLNP+A + + E
Sbjct: 283 MTNTDLSRLLKSDEIQNALREPKKDKARRLQKKNPLKNYRVMMRLNPFAGAQKAAAKAVE 342
Query: 61 AQRVKAKKEKLDKKRKPITKEEAAA 85
+R+K K+ KLD+KR T E A
Sbjct: 343 QRRLKEKQAKLDQKRGIATPVEGAG 367
>sp|Q4R5P9|RL4_MACFA 60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1
Length = 427
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 49/70 (70%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL +L+LNPYAKT R ++L +
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRWNTILRQ 343
Query: 61 AQRVKAKKEK 70
A+ K + +K
Sbjct: 344 ARNHKLRVDK 353
>sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1
SV=1
Length = 369
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 7/77 (9%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKR--APMKK-NPLKNLNTLLRLNPYAKTARRMSL 57
+ NAD+ R++NSDE+Q+ VR K VKR AP+++ NPLKNL +++LNP A + RR
Sbjct: 283 IANADIVRLVNSDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRR--- 339
Query: 58 LAEAQRVKAKKEKLDKK 74
+ + +K+K K+ KK
Sbjct: 340 -TQVKSLKSKGIKVSKK 355
>sp|Q28346|RL4_CANFA 60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2
Length = 421
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M+N DL+RI+ +R + ++ R +KKNPLKNL +L+LNPYAKT RR ++L +
Sbjct: 284 MLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 61 AQRVKAKKEK 70
A+ K + +K
Sbjct: 344 AKNHKLRMDK 353
>sp|P35679|RL4A_SCHPO 60S ribosomal protein L4-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl4a PE=1 SV=2
Length = 363
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 3 NADLARIINSDEVQSVVRPIK-TEVKRAPM-KKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
NAD+ R+INSDE+QS+V+ + VKRA + KKNPLKN L RLNPYAK + L
Sbjct: 286 NADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKLNT 345
Query: 61 AQRVKAKKEKL 71
+ KA EK
Sbjct: 346 GKTPKAAGEKF 356
>sp|P10664|RL4A_YEAST 60S ribosomal protein L4-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL4A PE=1 SV=4
Length = 362
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 4 ADLARIINSDEVQSVVRPIK--TEVKRAPMKKNPLKNLNTLLRLNPYAK 50
+D+ RIINS E+QS +RP T+ + +KKNPLKN LLRLNPYAK
Sbjct: 284 SDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAK 332
>sp|P49626|RL4B_YEAST 60S ribosomal protein L4-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL4B PE=1 SV=2
Length = 362
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 4 ADLARIINSDEVQSVVRPIK--TEVKRAPMKKNPLKNLNTLLRLNPYAK 50
+D+ RIINS E+QS +RP T+ + +KKNPLKN LLRLNPYAK
Sbjct: 284 SDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAK 332
>sp|Q9P784|RL4B_SCHPO 60S ribosomal protein L4-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl4b PE=3 SV=1
Length = 363
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
Query: 3 NADLARIINSDEVQSVVRPIK-TEVKRAPM-KKNPLKNLNTLLRLNPYAK 50
NAD+ R+INSDE+QS+V+ + VKRA + KKNPLKN L RLNPYAK
Sbjct: 286 NADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAK 335
>sp|P09180|RL4_DROME 60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2
SV=2
Length = 401
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60
M N DL+R++ S+E++ V+R + V R+ + NPL N+ L++LNPYA+ +R + LA
Sbjct: 287 MANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAA 346
Query: 61 AQRVKAK 67
+R AK
Sbjct: 347 EKRTVAK 353
>sp|P0DJ55|RL4_TETTS 60S ribosomal protein L4 OS=Tetrahymena thermophila (strain SB210)
GN=RPL4 PE=1 SV=1
Length = 410
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAK 50
+ NAD+ARIINS+EVQSVV+ T + KKNPL N N L +LNP AK
Sbjct: 290 LANADIARIINSNEVQSVVKVAGT-TETHERKKNPLTNNNALFKLNPAAK 338
>sp|P14117|RL4_XENTR 60S ribosomal protein L4 (Fragment) OS=Xenopus tropicalis GN=rpl4
PE=3 SV=1
Length = 96
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNL 39
M N DL RI+ S E+Q +R +VKR +KKNPLKNL
Sbjct: 58 MTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNL 96
>sp|O02056|RL4_CAEEL 60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1
SV=3
Length = 345
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMS 56
M N+D +RII S+EV +R K + +NPLK L +LNPYA R+ S
Sbjct: 284 MANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKAS 339
>sp|A7NHM5|RNY_ROSCS Ribonuclease Y OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=rny PE=3 SV=1
Length = 535
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 2 VNADLARIINSDEVQSVVRPIKTEVK------RAPMKKNPLKNLNTLLRLNPYAKTA--- 52
+ A + +I + VQS +R I+ E + R+ K L+ + LRL A+
Sbjct: 42 IGAGIGILIYKNSVQSQIRQIEAEARLQLEATRSEQKDLILRATDEALRLRTEAEAQIRE 101
Query: 53 RRMSLLAEAQRVKAKKEKLDKKRKPITKEE 82
R +L + +R++ K+E LD+K + + + E
Sbjct: 102 ARAALAKQEERLQRKEENLDRKIEGLERRE 131
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 56 SLLAEAQRVKAKKEKLDKKRK---------PITKEEAAAIKSAGKAWYQTMISDSD 102
+LL + R+K+ E+L +K P+T AI++AGK W +SD
Sbjct: 1287 TLLKDKDRLKSLDEQLSAPKKDVKQPEELPPMTSASEYAIRTAGKLWASVEKQESD 1342
>sp|P97477|AURKA_MOUSE Aurora kinase A OS=Mus musculus GN=Aurka PE=1 SV=1
Length = 395
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 17 SVVRPIKTEVKRAP-----MKKNPLKNLNTLLRLNPYAKTARRMSLLAEAQRVKAKKEKL 71
V RP+KT V P ++ P +NL + + A+R+ + +QRV ++ +KL
Sbjct: 8 CVSRPVKTTVPFGPKRVLVTEQIPSQNLGSA-----SSGQAQRVLCPSNSQRVPSQAQKL 62
Query: 72 DKKRKPITKEEAAA 85
+KP K+ AA
Sbjct: 63 GAGQKPAPKQLPAA 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,375,329
Number of Sequences: 539616
Number of extensions: 1268674
Number of successful extensions: 5516
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 5437
Number of HSP's gapped (non-prelim): 117
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)