Query 033538
Match_columns 117
No_of_seqs 133 out of 206
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00185 60S ribosomal protein 100.0 4.9E-33 1.1E-37 236.0 9.5 117 1-117 289-405 (405)
2 PF14374 Ribos_L4_asso_C: 60S 100.0 1.7E-32 3.8E-37 189.0 -1.9 69 1-69 10-79 (80)
3 PTZ00428 60S ribosomal protein 99.9 5.2E-26 1.1E-30 192.1 8.2 97 1-98 283-380 (381)
4 KOG1475 Ribosomal protein RPL1 99.6 4.3E-16 9.3E-21 130.0 0.9 60 1-60 283-344 (363)
5 PF07098 DUF1360: Protein of u 43.4 8.1 0.00018 27.8 0.1 19 4-22 7-25 (105)
6 KOG2456 Aldehyde dehydrogenase 26.7 32 0.00069 30.9 1.0 19 3-21 279-297 (477)
7 smart00427 H2B Histone H2B. 26.0 32 0.00068 24.3 0.7 12 9-20 54-65 (89)
8 PF14029 DUF4244: Protein of u 24.1 50 0.0011 21.5 1.4 15 6-20 34-48 (56)
9 PLN00158 histone H2B; Provisio 21.5 43 0.00093 24.9 0.7 12 9-20 80-91 (116)
10 PTZ00463 histone H2B; Provisio 20.5 47 0.001 24.7 0.8 12 9-20 81-92 (117)
No 1
>PLN00185 60S ribosomal protein L4-1; Provisional
Probab=100.00 E-value=4.9e-33 Score=235.97 Aligned_cols=117 Identities=85% Similarity=1.225 Sum_probs=111.6
Q ss_pred CCchhhhhhhCcHHHHhhhcCCcccccCCCCCCCcchhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCcH
Q 033538 1 MVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAEAQRVKAKKEKLDKKRKPITK 80 (117)
Q Consensus 1 MtNaDl~RiInSdEIQsvlr~~k~~~kr~~~KKNPLKN~~~mlrLNPyAk~~rr~a~~~~~~r~~~k~~k~~~kr~~~~~ 80 (117)
|||+||+|||||||||+||||++..++++++|+|||+|+++|+||||||+++|+++++.+..+..++.++.+.++....+
T Consensus 289 m~n~dl~rii~S~eiq~~lr~~~~~~~~~~~kknplkn~~~~~~lnpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (405)
T PLN00185 289 MVNADLARIINSDEVQSVVNPIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSK 368 (405)
T ss_pred cccccHHHHhccHHHHHHHhccCCccccchhhcCchHHHHHHHHhChHHHHHHHHHHHHHHHHHhcchhhHHHHhhhcch
Confidence 89999999999999999999999888889999999999999999999999999999999999999999988998888888
Q ss_pred HHHHHHHHHhHHHHHHHhcCCchhHHHhhHhhhcccC
Q 033538 81 EEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 117 (117)
Q Consensus 81 ~~~~~~~a~gk~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (117)
++..+++.+++.||++|.++++|++|++|++|++++|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (405)
T PLN00185 369 EEAAAIKAAGKAWYKTMISDSDYTEFDNFTKWLGVSQ 405 (405)
T ss_pred hhHHHHHHHHHHHHHHHhhccchhhhhccccccccCC
Confidence 8888888999999999999999999999999999876
No 2
>PF14374 Ribos_L4_asso_C: 60S ribosomal protein L4 C-terminal domain; PDB: 3O5H_D 3IZS_D 3O58_D 3IZR_D 4A17_C 4A1C_C 4A1E_C 4A1A_C.
Probab=99.97 E-value=1.7e-32 Score=189.03 Aligned_cols=69 Identities=64% Similarity=0.897 Sum_probs=59.4
Q ss_pred CCchhhhhhhCcHHHHhhhcCCcccccCC-CCCCCcchhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Q 033538 1 MVNADLARIINSDEVQSVVRPIKTEVKRA-PMKKNPLKNLNTLLRLNPYAKTARRMSLLAEAQRVKAKKE 69 (117)
Q Consensus 1 MtNaDl~RiInSdEIQsvlr~~k~~~kr~-~~KKNPLKN~~~mlrLNPyAk~~rr~a~~~~~~r~~~k~~ 69 (117)
|||+||+|||||||||+||||+++.++++ ++|+|||+|+++|+||||||+++++++++.++.+..++++
T Consensus 10 MtN~Dl~RiInSdEIQsvlr~~~~~~~r~~~~kkNPLkN~~~m~rLNPya~~~kr~~~~~~~~~~~~k~~ 79 (80)
T PF14374_consen 10 MTNADLSRIINSDEIQSVLRPPKKKPKRRSVQKKNPLKNLRAMLRLNPYAKVAKRAAILAQKKRKKKKAE 79 (80)
T ss_dssp -S---HHHHHHSHHHHCCCHHHHHCSSCCHHHCCCCCC-HHHCCCHHCHHHHHHHHCHSHHSCHHHHCHS
T ss_pred hccccHHHHhccHHHHHHHhcccccCcCCCCcCCCCcchHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999887 9999999999999999999999999999998887766544
No 3
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=99.93 E-value=5.2e-26 Score=192.11 Aligned_cols=97 Identities=44% Similarity=0.635 Sum_probs=84.1
Q ss_pred CCchhhhhhhCcHHHHhhhcCCc-ccccCCCCCCCcchhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCc
Q 033538 1 MVNADLARIINSDEVQSVVRPIK-TEVKRAPMKKNPLKNLNTLLRLNPYAKTARRMSLLAEAQRVKAKKEKLDKKRKPIT 79 (117)
Q Consensus 1 MtNaDl~RiInSdEIQsvlr~~k-~~~kr~~~KKNPLKN~~~mlrLNPyAk~~rr~a~~~~~~r~~~k~~k~~~kr~~~~ 79 (117)
|||+||+|||||||||+||||++ ....++++|+|||+|+++|+||||||+++|+++++.+.++..++.++.++++...
T Consensus 283 m~n~Dl~rii~S~eiq~~l~~~~~~~~~~~~~k~nplkn~~~~~~lnp~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 361 (381)
T PTZ00428 283 MTNADIARIINSEEVQAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRARK- 361 (381)
T ss_pred cccccHHHHhccHHHHHHhccccccccccchhhcCCchHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-
Confidence 89999999999999999999997 5667889999999999999999999999999999999999888888888766542
Q ss_pred HHHHHHHHHHhHHHHHHHh
Q 033538 80 KEEAAAIKSAGKAWYQTMI 98 (117)
Q Consensus 80 ~~~~~~~~a~gk~~~~~~~ 98 (117)
+-+++.+..++++||+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (381)
T PTZ00428 362 KAKKARLAKVAKALYKSIK 380 (381)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 2245566668889988764
No 4
>KOG1475 consensus Ribosomal protein RPL1/RPL2/RL4L4 [RNA processing and modification]
Probab=99.57 E-value=4.3e-16 Score=130.01 Aligned_cols=60 Identities=45% Similarity=0.499 Sum_probs=52.6
Q ss_pred CCchhhhhhhCcHHHHhhhcCCccccc-C-CCCCCCcchhHHHHHhcChHHHHHHHHHHHHH
Q 033538 1 MVNADLARIINSDEVQSVVRPIKTEVK-R-APMKKNPLKNLNTLLRLNPYAKTARRMSLLAE 60 (117)
Q Consensus 1 MtNaDl~RiInSdEIQsvlr~~k~~~k-r-~~~KKNPLKN~~~mlrLNPyAk~~rr~a~~~~ 60 (117)
|+|+||+|||||||||++++++..... + .+.|+|||+|.++|.+||||++....+..+..
T Consensus 283 ~~n~Dl~rii~Sdevqa~~de~~~v~~k~~~v~kKn~lk~~~v~~rlnPya~k~~aatk~~~ 344 (363)
T KOG1475|consen 283 MSNADLSRIINSDELQAKSDEKGKVAGKKPVVGKKNKLKNKGVLKRLNPYAKKKAAATKKPA 344 (363)
T ss_pred hhhhHHHHHHHHHHHHhhcccccccccccceeccccchhHHHHHHhhchHhHHHHHhhccCc
Confidence 899999999999999999999986553 3 58899999999999999999999887765443
No 5
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=43.43 E-value=8.1 Score=27.84 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.8
Q ss_pred hhhhhhhCcHHHHhhhcCC
Q 033538 4 ADLARIINSDEVQSVVRPI 22 (117)
Q Consensus 4 aDl~RiInSdEIQsvlr~~ 22 (117)
.=|||+|+.|.|=+-||.|
T Consensus 7 ~RlTRLi~~D~It~~lR~p 25 (105)
T PF07098_consen 7 FRLTRLIVKDKITSPLRAP 25 (105)
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 3589999999999999976
No 6
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=26.73 E-value=32 Score=30.93 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.2
Q ss_pred chhhhhhhCcHHHHhhhcC
Q 033538 3 NADLARIINSDEVQSVVRP 21 (117)
Q Consensus 3 NaDl~RiInSdEIQsvlr~ 21 (117)
..|++||||+.+.|++..-
T Consensus 279 S~d~sRiIn~~hf~Rl~~l 297 (477)
T KOG2456|consen 279 SKDLSRIINQRHFQRLSAL 297 (477)
T ss_pred cccHHHHhhHHHHHHHHHH
Confidence 5799999999999987653
No 7
>smart00427 H2B Histone H2B.
Probab=26.02 E-value=32 Score=24.35 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=10.5
Q ss_pred hhCcHHHHhhhc
Q 033538 9 IINSDEVQSVVR 20 (117)
Q Consensus 9 iInSdEIQsvlr 20 (117)
-|.|.|||.+||
T Consensus 54 TltsreIqtAvr 65 (89)
T smart00427 54 TLSSREIQTAVR 65 (89)
T ss_pred cCCHHHHHHHHH
Confidence 478999999987
No 8
>PF14029 DUF4244: Protein of unknown function (DUF4244)
Probab=24.08 E-value=50 Score=21.52 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.5
Q ss_pred hhhhhCcHHHHhhhc
Q 033538 6 LARIINSDEVQSVVR 20 (117)
Q Consensus 6 l~RiInSdEIQsvlr 20 (117)
|--|++||+|++.|.
T Consensus 34 L~~vvts~~v~~~L~ 48 (56)
T PF14029_consen 34 LYKVVTSDEVRSALT 48 (56)
T ss_pred HHHHhcchHHHHHHH
Confidence 456899999999875
No 9
>PLN00158 histone H2B; Provisional
Probab=21.47 E-value=43 Score=24.85 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=10.5
Q ss_pred hhCcHHHHhhhc
Q 033538 9 IINSDEVQSVVR 20 (117)
Q Consensus 9 iInSdEIQsvlr 20 (117)
-|.|.|||.+||
T Consensus 80 TltsrEIqtAvr 91 (116)
T PLN00158 80 TVTSREIQTAVR 91 (116)
T ss_pred cCCHHHHHHHHH
Confidence 478999999988
No 10
>PTZ00463 histone H2B; Provisional
Probab=20.50 E-value=47 Score=24.71 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=10.5
Q ss_pred hhCcHHHHhhhc
Q 033538 9 IINSDEVQSVVR 20 (117)
Q Consensus 9 iInSdEIQsvlr 20 (117)
-|.|.|||.+||
T Consensus 81 TltsrEIQtAvr 92 (117)
T PTZ00463 81 TLSSREIQTAIR 92 (117)
T ss_pred cCCHHHHHHHHh
Confidence 478999999998
Done!