Query 033539
Match_columns 117
No_of_seqs 109 out of 203
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04739 AMPKBI: 5'-AMP-activa 100.0 3E-39 6.4E-44 229.9 3.5 87 21-109 1-100 (100)
2 KOG1616 Protein involved in Sn 99.9 1.1E-26 2.4E-31 189.0 4.6 91 19-111 196-289 (289)
3 PF14121 DUF4289: Domain of un 42.6 27 0.00057 31.4 3.2 42 61-102 494-536 (614)
4 PHA03144 helicase-primase prim 41.2 12 0.00027 35.2 0.9 24 92-116 209-232 (746)
5 PHA03181 helicase-primase prim 29.4 25 0.00054 33.3 0.9 24 92-116 211-235 (764)
6 PHA03140 helicase-primase prim 25.2 33 0.00072 32.6 0.9 25 91-116 211-235 (772)
7 TIGR01160 SUI1_MOF2 translatio 24.3 76 0.0016 23.1 2.5 21 85-105 25-45 (110)
8 TIGR01159 DRP1 density-regulat 19.4 1.1E+02 0.0024 23.8 2.7 22 84-105 87-108 (173)
9 PF01253 SUI1: Translation ini 15.9 1.5E+02 0.0033 19.6 2.4 20 86-105 5-24 (83)
10 PRK00939 translation initiatio 15.4 1.5E+02 0.0033 20.9 2.4 21 85-105 23-43 (99)
No 1
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=100.00 E-value=3e-39 Score=229.85 Aligned_cols=87 Identities=54% Similarity=0.998 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCCC------------CccCCCCCCCCcccccccCCCCCC-CCCCCCCCCCCeEeeeeEEeeecccCCCe
Q 033539 21 KSPDSSYNNVYPGN------------EDEARDPPAVPPHLQHTLLSYPAS-RDASGILPAPQNVILNHLYIENRDVPRSV 87 (117)
Q Consensus 21 ~SP~ssY~~~~p~~------------ed~~k~PP~LPphL~~~iLN~~~s-~~~~~~Lp~P~HVvLNHLy~~s~~ik~~v 87 (117)
.+|+++|++++|+. ++++++||.|||||+++|||++.+ .|++++||+|+||+|||||+++ ||+||
T Consensus 1 ~~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~--ik~~v 78 (100)
T PF04739_consen 1 QSPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSS--IKDGV 78 (100)
T ss_dssp ------EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEE--EBTTE
T ss_pred CCCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEcc--cCCCe
Confidence 37899999999985 488999999999999999999854 4889999999999999999998 99999
Q ss_pred EEeeeceeecceeeEEEEeecc
Q 033539 88 VALGFTHRFRSKYVTVVLYKPV 109 (117)
Q Consensus 88 ~alg~ThRy~~KyVTtvlYkP~ 109 (117)
+|+|+|||||+||||||||||+
T Consensus 79 ~al~~T~Ryk~KyVT~vlYkP~ 100 (100)
T PF04739_consen 79 LALGTTHRYKSKYVTTVLYKPI 100 (100)
T ss_dssp EEEEEEEEETTEEEEEEEEEE-
T ss_pred EEEEEEEEecceEEEEEEecCC
Confidence 9999999999999999999996
No 2
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-26 Score=189.02 Aligned_cols=91 Identities=42% Similarity=0.745 Sum_probs=83.8
Q ss_pred cCCCCCCCCCCCCCCCCccCCC--CCCCCcccccccCCCCCCC-CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeecee
Q 033539 19 VPKSPDSSYNNVYPGNEDEARD--PPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHR 95 (117)
Q Consensus 19 ~p~SP~ssY~~~~p~~ed~~k~--PP~LPphL~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThR 95 (117)
...++..+|+|++|..+++.+. ||.|||||.++|||+.... |++.++++|+||+|||||+.+ ||+++++|++|||
T Consensus 196 ~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~s--ik~~~~~~~~~~r 273 (289)
T KOG1616|consen 196 LEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALS--IKDGVMVLSFTHR 273 (289)
T ss_pred cccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhc--cCCCeeEecceec
Confidence 3444599999999998888766 9999999999999998765 999999999999999999998 9999999999999
Q ss_pred ecceeeEEEEeecccC
Q 033539 96 FRSKYVTVVLYKPVQR 111 (117)
Q Consensus 96 y~~KyVTtvlYkP~~r 111 (117)
|++||||++||||+.+
T Consensus 274 ~~~k~vt~~lyk~~~~ 289 (289)
T KOG1616|consen 274 YKKKYVTTGLYKPLQL 289 (289)
T ss_pred ccccceeEEeeeeccC
Confidence 9999999999999874
No 3
>PF14121 DUF4289: Domain of unknown function (DUF4289)
Probab=42.60 E-value=27 Score=31.41 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=34.4
Q ss_pred CCCCCCCCCeEeeeeEEeeeccc-CCCeEEeeeceeecceeeE
Q 033539 61 ASGILPAPQNVILNHLYIENRDV-PRSVVALGFTHRFRSKYVT 102 (117)
Q Consensus 61 ~~~~Lp~P~HVvLNHLy~~s~~i-k~~v~alg~ThRy~~KyVT 102 (117)
...+|+.|.-++=|.||....-- |.--+-+|++-||.+||--
T Consensus 494 ~~~il~lP~~~~~~~lYy~~~lfkk~L~lq~G~~~~YfT~Y~a 536 (614)
T PF14121_consen 494 GEDILPLPEFVTRNNLYYQFKLFKKALFLQTGFDVRYFTKYYA 536 (614)
T ss_pred CCCcCccCeEEEEeEEEEEchhhhhhheeeeeeEEEEeecccC
Confidence 37889999999999999986544 4445689999999999843
No 4
>PHA03144 helicase-primase primase subunit; Provisional
Probab=41.20 E-value=12 Score=35.21 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=21.6
Q ss_pred eceeecceeeEEEEeecccCCCCCC
Q 033539 92 FTHRFRSKYVTVVLYKPVQRRGSTS 116 (117)
Q Consensus 92 ~ThRy~~KyVTtvlYkP~~r~~~~~ 116 (117)
.+.||.++| |+|-..|.+|+|+.+
T Consensus 209 k~a~F~R~Y-~s~~~Pp~k~~G~~~ 232 (746)
T PHA03144 209 KTARFAREY-DTLQFPPVKREGAMA 232 (746)
T ss_pred CceEEEeec-ccccCCccccccccc
Confidence 478999999 999999999999865
No 5
>PHA03181 helicase-primase primase subunit; Provisional
Probab=29.42 E-value=25 Score=33.34 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.4
Q ss_pred eceeecceeeEEEEeecccCC-CCCC
Q 033539 92 FTHRFRSKYVTVVLYKPVQRR-GSTS 116 (117)
Q Consensus 92 ~ThRy~~KyVTtvlYkP~~r~-~~~~ 116 (117)
.+.||.++| |+|-..|.+|+ |+.+
T Consensus 211 k~a~F~R~Y-~sv~~Pp~k~~~G~~~ 235 (764)
T PHA03181 211 KEDRFYREY-KSVSSRTKKTKLHNSN 235 (764)
T ss_pred cceeEEeec-ccccCCccccccCCcc
Confidence 478999999 99999999999 9865
No 6
>PHA03140 helicase-primase primase subunit; Provisional
Probab=25.17 E-value=33 Score=32.60 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.8
Q ss_pred eeceeecceeeEEEEeecccCCCCCC
Q 033539 91 GFTHRFRSKYVTVVLYKPVQRRGSTS 116 (117)
Q Consensus 91 g~ThRy~~KyVTtvlYkP~~r~~~~~ 116 (117)
--+.||.++| |+|...|.+|+|+.+
T Consensus 211 Tk~a~f~R~Y-~sv~~Pp~kr~G~~~ 235 (772)
T PHA03140 211 TKTARIYRSY-ASIFSPPRERAGRLS 235 (772)
T ss_pred cCceEEEecc-ccccCCcccccCCcc
Confidence 3578999999 999999999999765
No 7
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=24.32 E-value=76 Score=23.07 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=15.8
Q ss_pred CCeEEeeeceeecceeeEEEE
Q 033539 85 RSVVALGFTHRFRSKYVTVVL 105 (117)
Q Consensus 85 ~~v~alg~ThRy~~KyVTtvl 105 (117)
.+++.+....|-.+|+||+|-
T Consensus 25 ~~~I~Iri~qR~grK~VTiI~ 45 (110)
T TIGR01160 25 SNYIHIRIQQRNGRKTLTTVQ 45 (110)
T ss_pred cceEEEEEEEccCCccEEEEe
Confidence 456677777778889999983
No 8
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=19.38 E-value=1.1e+02 Score=23.80 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=18.8
Q ss_pred CCCeEEeeeceeecceeeEEEE
Q 033539 84 PRSVVALGFTHRFRSKYVTVVL 105 (117)
Q Consensus 84 k~~v~alg~ThRy~~KyVTtvl 105 (117)
..+.|.+....|=++|+||+|-
T Consensus 87 ~~~~V~I~~~~R~krK~VT~V~ 108 (173)
T TIGR01159 87 LPQKVTIKREPRTKRKFVTVIK 108 (173)
T ss_pred CCCeEEEEEEecCCCceEEEEe
Confidence 4567889999999999999983
No 9
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=15.87 E-value=1.5e+02 Score=19.55 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.5
Q ss_pred CeEEeeeceeecceeeEEEE
Q 033539 86 SVVALGFTHRFRSKYVTVVL 105 (117)
Q Consensus 86 ~v~alg~ThRy~~KyVTtvl 105 (117)
..+.+.+..|=.+|+||.|-
T Consensus 5 ~~I~I~~e~r~~~K~vT~V~ 24 (83)
T PF01253_consen 5 PKIHIRVEKRRGRKFVTIVS 24 (83)
T ss_dssp TCEEEEEEESSSSEEEEEEE
T ss_pred CEEEEEEEeCcCCeEEEEEE
Confidence 34666777888899999984
No 10
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=15.41 E-value=1.5e+02 Score=20.90 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.6
Q ss_pred CCeEEeeeceeecceeeEEEE
Q 033539 85 RSVVALGFTHRFRSKYVTVVL 105 (117)
Q Consensus 85 ~~v~alg~ThRy~~KyVTtvl 105 (117)
++.+.+....|=++|+||+|-
T Consensus 23 ~~~i~I~~ekr~~gK~VTiI~ 43 (99)
T PRK00939 23 QQRIKIKVDKRRYGKEVTIIE 43 (99)
T ss_pred CceEEEEEEecCCCceEEEEe
Confidence 356777778887899999984
Done!