Query 033539
Match_columns 117
No_of_seqs 109 out of 203
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v8q_B 5'-AMP-activated protei 100.0 4.4E-40 1.5E-44 229.1 5.9 83 25-109 2-87 (87)
2 2qrd_B SPCC1919.03C protein; A 100.0 5.3E-40 1.8E-44 232.5 4.9 87 22-110 2-96 (97)
3 2qlv_B Protein SIP2, protein S 100.0 2E-39 7E-44 257.9 4.9 90 18-109 136-252 (252)
4 3t4n_B SNF1 protein kinase sub 100.0 2.3E-37 7.8E-42 224.0 0.2 74 36-111 33-112 (113)
5 2xzm_F EIF1; ribosome, transla 19.4 89 0.003 21.1 3.0 21 84-104 15-35 (101)
6 2joy_A 50S ribosomal protein L 12.0 1.3E+02 0.0045 19.9 2.2 22 83-104 4-25 (96)
7 2ogh_A Eukaryotic translation 11.6 1.3E+02 0.0043 20.5 2.1 22 84-105 22-43 (108)
8 4ay0_A Chaperone protein CAF1M 9.5 1.8E+02 0.0062 21.7 2.5 50 66-115 155-208 (218)
9 3j21_5 50S ribosomal protein L 8.4 2.2E+02 0.0074 18.5 2.2 22 83-104 4-25 (83)
10 2ket_A Cathelicidin-6; antimic 6.4 46 0.0016 17.9 -1.5 7 94-100 4-10 (27)
No 1
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*
Probab=100.00 E-value=4.4e-40 Score=229.09 Aligned_cols=83 Identities=39% Similarity=0.746 Sum_probs=67.3
Q ss_pred CCCCCCCCC--CCccCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeeceeecceee
Q 033539 25 SSYNNVYPG--NEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYV 101 (117)
Q Consensus 25 ssY~~~~p~--~ed~~k~PP~LPphL~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThRy~~KyV 101 (117)
++|+|+++. .+|++|+||.|||||+++|||++++. ||+++||+|+||||||||++| |+++|+|||+|||||+|||
T Consensus 2 ~~y~q~~~~~~~~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~s--ik~~v~alg~T~Ry~~KyV 79 (87)
T 2v8q_B 2 GPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS--IKDSVMVLSATHRYKKKYV 79 (87)
T ss_dssp ---CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECC--CBTTEEEEEEEEEETTEEE
T ss_pred CcccccCCCCCccccccCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeEEEec--ccCCeEEEeeeeeecceeE
Confidence 479999886 48999999999999999999998664 889999999999999999998 7899999999999999999
Q ss_pred EEEEeecc
Q 033539 102 TVVLYKPV 109 (117)
Q Consensus 102 TtvlYkP~ 109 (117)
|+|||||+
T Consensus 80 T~vlYkP~ 87 (87)
T 2v8q_B 80 TTLLYKPI 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeeC
Confidence 99999996
No 2
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*
Probab=100.00 E-value=5.3e-40 Score=232.51 Aligned_cols=87 Identities=33% Similarity=0.620 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCCC-----c--cCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeEeeeeEEeeecccCCCeEEeeec
Q 033539 22 SPDSSYNNVYPGNE-----D--EARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFT 93 (117)
Q Consensus 22 SP~ssY~~~~p~~e-----d--~~k~PP~LPphL~~~iLN~~~s~-~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~T 93 (117)
||+++|+++||... + ++++||.|||||+++|||++++. ||+++||+|+||||||||++| ||++|+|||+|
T Consensus 2 ~~~~~y~~eIP~~~~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~s--ik~~vlalg~T 79 (97)
T 2qrd_B 2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAAN--TQLGVLALSAT 79 (97)
T ss_dssp --CCCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEEC--CSSSSEEEEEE
T ss_pred CccccccccCChhhhcccccccccCCCCCCChhhcccccCCCCCCCCCcccCCCCCEEEeeeeeeec--ccCCeEEEeee
Confidence 68899999999854 4 78999999999999999998765 889999999999999999998 78999999999
Q ss_pred eeecceeeEEEEeeccc
Q 033539 94 HRFRSKYVTVVLYKPVQ 110 (117)
Q Consensus 94 hRy~~KyVTtvlYkP~~ 110 (117)
||||+||||+|||||++
T Consensus 80 ~Ry~~KyVT~vlYkP~~ 96 (97)
T 2qrd_B 80 TRYHRKYVTTAMFKNFD 96 (97)
T ss_dssp EEETTEEEEEEEEECCC
T ss_pred eeeeceeEEEEEEecCC
Confidence 99999999999999986
No 3
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=100.00 E-value=2e-39 Score=257.86 Aligned_cols=90 Identities=31% Similarity=0.631 Sum_probs=50.6
Q ss_pred ecCCCCCCCCCCCCCCC-------C--------------ccCCCCCCCCcccccccCCCCCCC------CCCCCCCCCCe
Q 033539 18 EVPKSPDSSYNNVYPGN-------E--------------DEARDPPAVPPHLQHTLLSYPASR------DASGILPAPQN 70 (117)
Q Consensus 18 e~p~SP~ssY~~~~p~~-------e--------------d~~k~PP~LPphL~~~iLN~~~s~------~~~~~Lp~P~H 70 (117)
|.+.+|+++|+|+||.. | ..+++||.|||||+++|||+++.+ |++++||+|||
T Consensus 136 ~~~~~p~~~y~~eiP~~~~~~~~~e~~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~~~~~~Lp~PnH 215 (252)
T 2qlv_B 136 DLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNH 215 (252)
T ss_dssp ----------CCCCCGGGTCHHHHHHHHHHHCC-----------CCCCCCC----------------------------C
T ss_pred cCCCCCcccccccCCchhcccchhhhhhhcccccccccccccCCCCCCChhhcchhcCCCCccccccccCCcccCCCCCE
Confidence 78999999999999974 1 146999999999999999997653 68999999999
Q ss_pred EeeeeEEeeecccCCCeEEeeeceeecceeeEEEEeecc
Q 033539 71 VILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109 (117)
Q Consensus 71 VvLNHLy~~s~~ik~~v~alg~ThRy~~KyVTtvlYkP~ 109 (117)
||||||||+| ||++|||||||||||+|||||||||||
T Consensus 216 VvLNHL~~~s--Ik~~vlal~~T~RYk~KyVTtvlYkP~ 252 (252)
T 2qlv_B 216 VVLNHLVTSS--IKHNTLCVASIVRYKQKYVTQILYTPI 252 (252)
T ss_dssp CSCCBCEECC--CCSSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEeeeEEEec--ccCCEEEEeeeeeecceeEEEEEEeeC
Confidence 9999999998 999999999999999999999999997
No 4
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B*
Probab=100.00 E-value=2.3e-37 Score=224.04 Aligned_cols=74 Identities=32% Similarity=0.670 Sum_probs=67.7
Q ss_pred ccCCCCCCCCcccccccCCCCCC------CCCCCCCCCCCeEeeeeEEeeecccCCCeEEeeeceeecceeeEEEEeecc
Q 033539 36 DEARDPPAVPPHLQHTLLSYPAS------RDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPV 109 (117)
Q Consensus 36 d~~k~PP~LPphL~~~iLN~~~s------~~~~~~Lp~P~HVvLNHLy~~s~~ik~~v~alg~ThRy~~KyVTtvlYkP~ 109 (117)
..|++||.|||||+++|||++.+ .|++++||+|+||||||||++| ||++|+|||+|||||+||||+|||||+
T Consensus 33 ~~~~~PP~LPphL~~~iLN~~~~~~~~~~~d~~~~Lp~P~HVvLNHLy~~s--ik~~vlalg~T~RYk~KyVT~VlYKP~ 110 (113)
T 3t4n_B 33 TSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSS--IKHNTLCVASIVRYKQKYVTQILYTPI 110 (113)
T ss_dssp CGGGSCCBCCGGGCHHHHHHHHHHHHHHHHHCCSCCCCCCGGGTTBCEECC--CBTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcCCCCCCCChhhcccccCCCccccccccCCCcccCCCCCeEeeeeeeeec--ccCceEEEeeeeeeeceeEEEEEEeec
Confidence 45799999999999999998643 2678999999999999999998 889999999999999999999999999
Q ss_pred cC
Q 033539 110 QR 111 (117)
Q Consensus 110 ~r 111 (117)
+|
T Consensus 111 q~ 112 (113)
T 3t4n_B 111 ES 112 (113)
T ss_dssp C-
T ss_pred cc
Confidence 97
No 5
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=19.43 E-value=89 Score=21.12 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=16.7
Q ss_pred CCCeEEeeeceeecceeeEEE
Q 033539 84 PRSVVALGFTHRFRSKYVTVV 104 (117)
Q Consensus 84 k~~v~alg~ThRy~~KyVTtv 104 (117)
+++.+.+....|=.+|.||+|
T Consensus 15 ~~~~v~I~~~~R~g~K~VT~V 35 (101)
T 2xzm_F 15 FQTHIHIRVEQRRGRKCFTTV 35 (101)
T ss_dssp CSCCEEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEeccCCccEEEE
Confidence 345677888888778999998
No 6
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=12.00 E-value=1.3e+02 Score=19.92 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=18.1
Q ss_pred cCCCeEEeeeceeecceeeEEE
Q 033539 83 VPRSVVALGFTHRFRSKYVTVV 104 (117)
Q Consensus 83 ik~~v~alg~ThRy~~KyVTtv 104 (117)
++-|-+|+...-||+.|++..|
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv 25 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIV 25 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEE
Confidence 5668899999999999987554
No 7
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=11.61 E-value=1.3e+02 Score=20.45 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=15.4
Q ss_pred CCCeEEeeeceeecceeeEEEE
Q 033539 84 PRSVVALGFTHRFRSKYVTVVL 105 (117)
Q Consensus 84 k~~v~alg~ThRy~~KyVTtvl 105 (117)
..+.+.+....|=.+|+||+|-
T Consensus 22 ~~~~V~Ir~~~R~g~K~VT~V~ 43 (108)
T 2ogh_A 22 TSNYIHIRIQQRNGRKTLTTVQ 43 (108)
T ss_dssp CSCSEEEEEECCSSSCCEEEEE
T ss_pred CCCeEEEEEEEccCCceEEEEe
Confidence 3345666777775679999984
No 8
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=9.54 E-value=1.8e+02 Score=21.73 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=37.2
Q ss_pred CCCCeEeeeeEEeeecccCCCeEEeeeceeecce----eeEEEEeecccCCCCC
Q 033539 66 PAPQNVILNHLYIENRDVPRSVVALGFTHRFRSK----YVTVVLYKPVQRRGST 115 (117)
Q Consensus 66 p~P~HVvLNHLy~~s~~ik~~v~alg~ThRy~~K----yVTtvlYkP~~r~~~~ 115 (117)
|-|-|+.|..|-...+.+..+|++-+++.+|.-+ --..|-|+-+.--|+.
T Consensus 155 ptPyyvtl~~l~~~g~~i~~~mv~P~s~~~~~l~~~~~~~~~v~~~~InDyGg~ 208 (218)
T 4ay0_A 155 PSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQGGL 208 (218)
T ss_dssp CSSSCEEEEEEEETTEECCCCEECTTEEEEEEC---CTTCCEEEEEEBCTTSCB
T ss_pred CCCCEEEEEEEEECCEEccCcEECCCCeeEEECCcCCCCCCeEEEEEEccCCCC
Confidence 7899999999998777788899999999998522 1125667777665553
No 9
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=8.37 E-value=2.2e+02 Score=18.49 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=17.7
Q ss_pred cCCCeEEeeeceeecceeeEEE
Q 033539 83 VPRSVVALGFTHRFRSKYVTVV 104 (117)
Q Consensus 83 ik~~v~alg~ThRy~~KyVTtv 104 (117)
++-|-+|+...-||+.|+...|
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv 25 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVV 25 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEE
Confidence 4557789999999999987655
No 10
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=6.45 E-value=46 Score=17.92 Aligned_cols=7 Identities=57% Similarity=1.208 Sum_probs=4.9
Q ss_pred eeeccee
Q 033539 94 HRFRSKY 100 (117)
Q Consensus 94 hRy~~Ky 100 (117)
.|||+||
T Consensus 4 krfrkkf 10 (27)
T 2ket_A 4 KRFRKKF 10 (27)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4777776
Done!