Query 033540
Match_columns 117
No_of_seqs 33 out of 35
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 05:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g1p_A Conotoxin EVIA; three d 62.1 1.7 5.9E-05 25.7 0.1 9 98-106 5-13 (33)
2 1cix_A Protein (tachystatin A) 34.3 16 0.00056 22.7 1.3 20 85-104 21-42 (44)
3 2yre_A F-box only protein 30; 22.7 25 0.00085 24.6 0.7 23 87-111 19-41 (100)
4 1r9i_A MU-conotoxin PIIIA; cys 19.8 31 0.001 19.5 0.6 18 73-90 3-24 (26)
5 1jy2_P Fibrinogen gamma-B chai 19.1 33 0.0011 21.7 0.6 20 90-111 5-24 (48)
6 2kgu_A Purotoxin-1; P2X recept 18.5 32 0.0011 20.3 0.5 20 75-94 3-22 (35)
7 3c75_L Methylamine dehydrogena 16.2 49 0.0017 25.7 1.2 14 71-84 92-105 (188)
8 1fjn_A Defensin MGD-1; cystine 16.1 56 0.0019 19.3 1.2 22 95-116 17-39 (39)
9 3sjl_C Methylamine dehydrogena 15.3 51 0.0017 24.6 1.0 14 71-84 35-48 (137)
10 2k35_A Hydramacin-1; antimicro 14.6 48 0.0016 21.8 0.6 16 71-86 30-45 (60)
No 1
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=62.11 E-value=1.7 Score=25.65 Aligned_cols=9 Identities=67% Similarity=1.674 Sum_probs=7.7
Q ss_pred CCeeeeeee
Q 033540 98 KPFGFCSFT 106 (117)
Q Consensus 98 kPFG~CsFt 106 (117)
|||||||+-
T Consensus 5 kpygfcslp 13 (33)
T 1g1p_A 5 KPYGFCSLP 13 (33)
T ss_dssp CTTSBCCCS
T ss_pred ccccceech
Confidence 799999973
No 2
>1cix_A Protein (tachystatin A); antimicrobial peptide, chitin-binding peptide; NMR {Tachypleus tridentatus} SCOP: g.3.6.2
Probab=34.29 E-value=16 Score=22.68 Aligned_cols=20 Identities=35% Similarity=1.170 Sum_probs=17.7
Q ss_pred CCceeeeec--CCCCCCeeeee
Q 033540 85 SPCCYAINC--NIPNKPFGFCS 104 (117)
Q Consensus 85 t~CCY~InC--niP~kPFG~Cs 104 (117)
-|||....| +.||--||.|+
T Consensus 21 ~~cc~g~~cr~~fpgs~~g~c~ 42 (44)
T 1cix_A 21 IPCCRGLTCRSYFPGSTYGRCQ 42 (44)
T ss_dssp CCCCTTCEEEESSTTCSCEEEE
T ss_pred cceecceEEcccCCCccceeee
Confidence 589999888 68999999997
No 3
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.74 E-value=25 Score=24.61 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=17.2
Q ss_pred ceeeeecCCCCCCeeeeeeeccccc
Q 033540 87 CCYAINCNIPNKPFGFCSFTPQTCN 111 (117)
Q Consensus 87 CCY~InCniP~kPFG~CsFtP~tC~ 111 (117)
.||+++|++|..|=-.|. |.+|.
T Consensus 19 ~C~~~~C~~~~~~~~~C~--~i~CP 41 (100)
T 2yre_A 19 NCVSRRCMTRPEPGISCD--LIGCP 41 (100)
T ss_dssp GCCCTTCCCCCCTTTCCC--EEECT
T ss_pred hhcccccCCCCCCCCeee--eeeCC
Confidence 588889988877766666 66664
No 4
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=19.82 E-value=31 Score=19.45 Aligned_cols=18 Identities=44% Similarity=1.154 Sum_probs=12.2
Q ss_pred cccCCCC----CeeecCCceee
Q 033540 73 TCCGGAK----GLCLPSPCCYA 90 (117)
Q Consensus 73 tCC~~a~----~~C~~t~CCY~ 90 (117)
.||+.++ +.|-|.-||-.
T Consensus 3 ~CC~~Pk~CksR~CkP~~CC~~ 24 (26)
T 1r9i_A 3 LCCGFPKSCRSRQCKPHRCCXX 24 (26)
T ss_dssp TTTTSTTGGGSTTTTTSSCC--
T ss_pred cccCCCCccccccccccccccc
Confidence 3788874 57888888853
No 5
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=19.09 E-value=33 Score=21.65 Aligned_cols=20 Identities=45% Similarity=0.928 Sum_probs=16.4
Q ss_pred eeecCCCCCCeeeeeeeccccc
Q 033540 90 AINCNIPNKPFGFCSFTPQTCN 111 (117)
Q Consensus 90 ~InCniP~kPFG~CsFtP~tC~ 111 (117)
.+||=+|+--|| |+-|.||+
T Consensus 5 ~~~~Ci~d~rFG--sYCPTTCG 24 (48)
T 1jy2_P 5 RDNCCILDERFG--SYCPTTCG 24 (48)
T ss_dssp CCSSCCSBTTTB--CEEECHHH
T ss_pred cccccccccccc--CcCCcccc
Confidence 467889999998 67788886
No 6
>2kgu_A Purotoxin-1; P2X receptor; NMR {Geolycosa}
Probab=18.46 E-value=32 Score=20.31 Aligned_cols=20 Identities=25% Similarity=0.740 Sum_probs=14.9
Q ss_pred cCCCCCeeecCCceeeeecC
Q 033540 75 CGGAKGLCLPSPCCYAINCN 94 (117)
Q Consensus 75 C~~a~~~C~~t~CCY~InCn 94 (117)
|+..-.+|.+.|||-+..|-
T Consensus 3 CA~~y~~C~~~~CC~~r~C~ 22 (35)
T 2kgu_A 3 CAEKGIRCDDIHCCTGLKCK 22 (35)
T ss_dssp CBCTTCCCSSSCBCTTCEEE
T ss_pred hhhhccccCCccCcCCCCeE
Confidence 45666788899999866553
No 7
>3c75_L Methylamine dehydrogenase light chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=16.19 E-value=49 Score=25.75 Aligned_cols=14 Identities=43% Similarity=1.215 Sum_probs=11.3
Q ss_pred cccccCCCCCeeec
Q 033540 71 VCTCCGGAKGLCLP 84 (117)
Q Consensus 71 ~CtCC~~a~~~C~~ 84 (117)
.|.||||+-.+|-|
T Consensus 92 LCsCCGGs~tsCPP 105 (188)
T 3c75_L 92 ICDCSGGSLTNCPP 105 (188)
T ss_dssp BGGGGTSCSSSBCT
T ss_pred eEcCcCCCCcCCCC
Confidence 59999998777754
No 8
>1fjn_A Defensin MGD-1; cystine stabilized alpha-beta motif, antibacterial, disulfide bond, synthesis, antimicrobial protein; NMR {Synthetic} SCOP: g.3.7.3
Probab=16.09 E-value=56 Score=19.35 Aligned_cols=22 Identities=36% Similarity=1.043 Sum_probs=18.1
Q ss_pred CCCCCeeeee-eeccccccCccc
Q 033540 95 IPNKPFGFCS-FTPQTCNCLRCH 116 (117)
Q Consensus 95 iP~kPFG~Cs-FtP~tC~C~gC~ 116 (117)
++++.-|+|. |.-.+|.|..|+
T Consensus 17 i~g~~gGyC~G~~~~~C~C~~~~ 39 (39)
T 1fjn_A 17 IPGRCGGYCGGWHRLRCTCYRCG 39 (39)
T ss_dssp STTCCEEEECSSTTCSEEEECCC
T ss_pred hcCCCceecCCCcCCEEEeeecC
Confidence 5688899995 667899998885
No 9
>3sjl_C Methylamine dehydrogenase light chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3l4o_C* 3l4m_C* 3pxs_C* 3pxt_C* 3pxw_C* 3rlm_C* 3orv_C* 3rn0_C* 3rn1_C* 3rmz_C* 3sle_C* 3svw_C* 3sws_C* 3sxt_C* 2gc4_B* 1mg3_B* 1mg2_B* 2gc7_B* 2j55_L* 2j56_L* ...
Probab=15.30 E-value=51 Score=24.62 Aligned_cols=14 Identities=43% Similarity=1.215 Sum_probs=11.2
Q ss_pred cccccCCCCCeeec
Q 033540 71 VCTCCGGAKGLCLP 84 (117)
Q Consensus 71 ~CtCC~~a~~~C~~ 84 (117)
.|.||||+-.+|-|
T Consensus 35 LCscCGGs~tsCPP 48 (137)
T 3sjl_C 35 ICDCSGGSLTNCPP 48 (137)
T ss_dssp BGGGTTCBTTBBCT
T ss_pred EEcccCCCcccCCC
Confidence 59999998777755
No 10
>2k35_A Hydramacin-1; antimicrobial protein; NMR {Hydra}
Probab=14.59 E-value=48 Score=21.76 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=14.0
Q ss_pred cccccCCCCCeeecCC
Q 033540 71 VCTCCGGAKGLCLPSP 86 (117)
Q Consensus 71 ~CtCC~~a~~~C~~t~ 86 (117)
.|+++|..+|-|+++|
T Consensus 30 ~Ck~~g~~~G~C~~~P 45 (60)
T 2k35_A 30 RCKELGRKRGQCEEKP 45 (60)
T ss_dssp HHHTTTCSCEEEEECG
T ss_pred HHHHhCcCCCeEEeCc
Confidence 5888998999999887
Done!