Query 033541
Match_columns 117
No_of_seqs 121 out of 1162
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_Y 50S ribosomal protein L 100.0 2.4E-30 8.1E-35 182.9 7.7 74 2-78 36-110 (110)
2 2ftc_N Mitochondrial ribosomal 100.0 7.4E-30 2.5E-34 176.6 7.8 70 2-74 27-96 (96)
3 3r8s_U 50S ribosomal protein L 100.0 6E-29 2.1E-33 173.7 6.7 69 2-74 32-102 (102)
4 3bbo_W Ribosomal protein L24; 99.9 3.5E-28 1.2E-32 185.4 -2.2 75 2-79 98-173 (191)
5 2zjr_R 50S ribosomal protein L 99.9 1.6E-27 5.4E-32 169.5 -1.7 69 2-74 45-114 (115)
6 1vq8_T 50S ribosomal protein L 99.2 1.3E-12 4.3E-17 93.4 0.9 40 2-51 72-111 (120)
7 3j21_U 50S ribosomal protein L 99.0 2.7E-11 9.2E-16 86.6 0.9 41 2-52 75-115 (121)
8 2zkr_t 60S ribosomal protein L 98.9 2.9E-10 9.9E-15 83.4 1.1 48 2-62 79-126 (145)
9 3iz5_Y 60S ribosomal protein L 98.8 9.2E-10 3.2E-14 81.1 1.7 35 2-46 78-112 (150)
10 3u5e_Y L33, YL33, 60S ribosoma 98.7 2.4E-09 8.3E-14 77.0 2.0 35 2-46 79-113 (127)
11 4a17_S RPL26, 60S ribosomal pr 98.7 3.1E-09 1E-13 77.2 2.1 35 2-46 78-112 (135)
12 3gqh_A Preneck appendage prote 24.5 20 0.00069 26.3 0.6 27 39-65 5-31 (163)
No 1
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=99.96 E-value=2.4e-30 Score=182.91 Aligned_cols=74 Identities=35% Similarity=0.555 Sum_probs=67.9
Q ss_pred cceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCceecCcc
Q 033541 2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPE 78 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~ip~P~ 78 (117)
+++|||||+++||+||++ +.+|||+++|+|||+|||||+||++++|+||+|++++||+|+|||+ +||++|+.|.
T Consensus 36 ~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~tRvg~~~~edG~kvRv~k---k~g~~i~~~~ 110 (110)
T 3v2d_Y 36 AVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCA---KCGGALDTEE 110 (110)
T ss_dssp EEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSBCCEEEEECSSCCEEEEES---SSCCBCC---
T ss_pred EEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCccEEEEEECCCCcEEEEEe---cCCCccCCCC
Confidence 689999999999999997 5799999999999999999999999999999999999999999999 6789998763
No 2
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=99.96 E-value=7.4e-30 Score=176.60 Aligned_cols=70 Identities=27% Similarity=0.391 Sum_probs=65.6
Q ss_pred cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541 2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSII 74 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i 74 (117)
+++|||||+++||+||+++++|||+++|+|||+|||||+||++++|+||+|++++||+|+|||++ ||++|
T Consensus 27 ~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~~~~~dg~kvR~~kk---~g~~i 96 (96)
T 2ftc_N 27 WVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTR---SGRII 96 (96)
T ss_pred EEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCHHHEEEEeCcCCCceEEEEEEccCCcEEEEEec---cCCCC
Confidence 68999999999999999888999999999999999999999999999999999999999999995 55554
No 3
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=99.95 E-value=6e-29 Score=173.69 Aligned_cols=69 Identities=38% Similarity=0.507 Sum_probs=64.5
Q ss_pred cceEEeeeeEEEeecCCC--CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541 2 TPLIWICVQVKKHIKGGE--GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSII 74 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~--~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i 74 (117)
+++|||||++++|+||++ +++|||+++|+|||+|||||+||+|++||||+|+ ++||+|+|||+ +||++|
T Consensus 32 ~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~trvg~~-~edG~kvRv~k---~~g~~i 102 (102)
T 3r8s_U 32 KVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFR-FEDGKKVRFFK---SNSETI 102 (102)
T ss_dssp EEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEEECEEEE-EETTEEEEEET---TTTEEC
T ss_pred EEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCceEEEEE-eCCCeEEEEEe---ecCcCC
Confidence 689999999999999987 7899999999999999999999999999999999 69999999999 566664
No 4
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.93 E-value=3.5e-28 Score=185.38 Aligned_cols=75 Identities=37% Similarity=0.463 Sum_probs=70.1
Q ss_pred cceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCceecCccc
Q 033541 2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEI 79 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~ip~P~~ 79 (117)
+++|||||+++||+|+++ +++|||+++|+|||+|||||+||+|++++||+|++++||+|+|||+ +||++|+.|+.
T Consensus 98 rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp~~gkptRVg~k~~edGkKVRv~K---ksGe~I~~p~~ 173 (191)
T 3bbo_W 98 TVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLI---KTGEIVDTPDR 173 (191)
T ss_dssp CCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSSSCCCCCCCCCSSSCCCCCSSSC---CSSSCCCCCC-
T ss_pred EEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEeccCCCceEEEEEEccCCcEEEEEe---cCCCCcCChhH
Confidence 689999999999999986 6789999999999999999999999999999999989999999999 67899988876
No 5
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=99.92 E-value=1.6e-27 Score=169.51 Aligned_cols=69 Identities=38% Similarity=0.481 Sum_probs=63.9
Q ss_pred cceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541 2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSII 74 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i 74 (117)
+++|||||+++||+|+++ +++|||+++|+|||+|||||+||+++++|||+|++ +||+|+|||+ +||++|
T Consensus 45 ~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~~~k~tRvg~~~-~dG~kvR~~k---k~g~~i 114 (115)
T 2zjr_R 45 KVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAV---ASGKTI 114 (115)
T ss_dssp EEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSBCCCCCCCCC-SCTTSCCCCS---SSCCC-
T ss_pred EEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEeccCCCceEEEEEE-cCCCEEEEEe---ecCCCc
Confidence 689999999999999987 67999999999999999999999999999999998 8999999999 566766
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.23 E-value=1.3e-12 Score=93.36 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=36.4
Q ss_pred cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEE
Q 033541 2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVG 51 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~ 51 (117)
+++|||||+ +| ++|| ++|+|||+|||||+||++++++|++
T Consensus 72 ~V~VEgvn~-kK-------~~Gg--~~e~pIh~SNV~i~~~~~~k~~Rv~ 111 (120)
T 1vq8_T 72 VIHVEDVTL-EK-------TDGE--EVPRPLDTSNVRVTDLDLEDEKREA 111 (120)
T ss_dssp EEEETTCEE-EC-------SSSC--EEECCBCGGGEEEEECCCCCHHHHH
T ss_pred EEEEeCeEe-Ec-------CCCC--EEEeeechHHEEEEeccCCCchhhe
Confidence 689999999 66 3677 9999999999999999999999987
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.05 E-value=2.7e-11 Score=86.56 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=36.1
Q ss_pred cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEEE
Q 033541 2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGT 52 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~ 52 (117)
+++|||||++++| | .++|+|||+|||||+||+++.++|+++
T Consensus 75 ~V~VEgvn~~k~~--------G--~~~e~pIh~SNV~l~~~~~~d~~R~~~ 115 (121)
T 3j21_U 75 RIYVEGATLRKTN--------G--TEVFYPIHPSNVMIIELNLEDEKRKKI 115 (121)
T ss_dssp EEEETTCEEECSS--------S--CEEECCBCGGGEEEEECCCCCHHHHHH
T ss_pred EEEEeCeEEEecC--------C--cEEEcccCHHHeEEEcCccCCcHHHHH
Confidence 6899999999864 3 389999999999999999999998764
No 8
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.89 E-value=2.9e-10 Score=83.41 Aligned_cols=48 Identities=33% Similarity=0.255 Sum_probs=34.6
Q ss_pred cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEE
Q 033541 2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVR 62 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvR 62 (117)
+++|||||+ +|++ | +++|+|||+|||||+||+++++++ .+++...+.|
T Consensus 79 ~V~VEgvn~----~Kp~----G--~~~e~PIh~SNV~lv~~~~~k~~k---~~le~k~~~r 126 (145)
T 2zkr_t 79 VIYIERVQR----EKAN----G--TTVHVGIHPSKVVITRLKLDKDRK---KILERKAKSR 126 (145)
T ss_dssp EEEETTCEE----ECSS----C--CEEECCBCGGGEEECC-CCCHHHH---HHHHC-----
T ss_pred EEEEeeeEe----EcCC----C--ceEEeccCHHHEEEEcCcCCchHH---HHhhcccccc
Confidence 689999999 4553 4 899999999999999999999886 2345444333
No 9
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=98.82 E-value=9.2e-10 Score=81.14 Aligned_cols=35 Identities=29% Similarity=0.204 Sum_probs=30.3
Q ss_pred cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCC
Q 033541 2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGK 46 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k 46 (117)
+++|||||++|+| |+ +.|+|||+|||||+|+++++
T Consensus 78 ~V~VEGVN~~K~~--------G~--~~eapIh~SNV~i~~~k~dk 112 (150)
T 3iz5_Y 78 VIHVERITREKVN--------GS--TVNVGIHPSKVVVTKLKLDK 112 (150)
T ss_dssp EEEETTCEEECTT--------SC--EEECCBCGGGEEEEECCCCS
T ss_pred EEEEeCcEEEeCC--------CC--EEecccchHHEEEEcccCCh
Confidence 6899999999864 32 78999999999999999865
No 10
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=98.74 E-value=2.4e-09 Score=77.00 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=29.5
Q ss_pred cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCC
Q 033541 2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGK 46 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k 46 (117)
+++|||||++|. .|+ ++|+|||+|||||+|+++++
T Consensus 79 ~V~VEgVn~~K~--------~G~--~~e~pIh~SNV~i~~~~~dk 113 (127)
T 3u5e_Y 79 AVQVDKVTKEKV--------NGA--SVPINLHPSKLVITKLHLDK 113 (127)
T ss_dssp EEEEETCEEECS--------SSC--EEECCBCGGGEEEEECCCCH
T ss_pred EEEEeCeEEECC--------CCc--EEEcccchHHEEEEccccCc
Confidence 689999999863 243 88999999999999998863
No 11
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=98.73 E-value=3.1e-09 Score=77.18 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=29.8
Q ss_pred cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCC
Q 033541 2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGK 46 (117)
Q Consensus 2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k 46 (117)
+++|||||++|. .| .++|+|||+|||||+|+++++
T Consensus 78 ~V~VEgVn~~K~--------~G--~~~e~pIh~SNV~i~~~k~dk 112 (135)
T 4a17_S 78 AIHVEKISKNKL--------NG--APYQIPLSASQLVLTKLKLDK 112 (135)
T ss_dssp EEEETTCCEEET--------TT--EEECCCBCGGGEEEEECCCCH
T ss_pred EEEEeCeEEEcC--------CC--CEEEcccchHHEEEEcccCCc
Confidence 689999999873 24 389999999999999998864
No 12
>3gqh_A Preneck appendage protein; beta barrel, viral protein; 1.80A {Bacillus phage PHI29} PDB: 3gqk_A*
Probab=24.51 E-value=20 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.5
Q ss_pred eecCCCCCceeEEEEEccCCcEEEEEe
Q 033541 39 VLDPVTGKPCKVGTKYLEDGTKVRVAR 65 (117)
Q Consensus 39 Lvdp~~~k~tRV~~r~~edG~KvRv~k 65 (117)
++-..++++.+++|-++-+|.|+|.+.
T Consensus 5 ~FEs~dG~~I~~Gy~Vtl~g~KIR~A~ 31 (163)
T 3gqh_A 5 YFESLGGQVIETGYLVTLEKGKIRKAE 31 (163)
T ss_dssp EEEBTTSSCCCTTCEEEEETTEEEECC
T ss_pred heeccCCCcccCCeEEEecCCEEEecC
Confidence 445567889999998888899999997
Done!