RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033541
         (117 letters)



>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
          thermophilus [TaxId: 274]}
          Length = 101

 Score = 60.9 bits (148), Expect = 3e-14
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 10 QVKKHIKGGEGH-EGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 65
           VKK ++    + +GG    EAP+HAS V+ + P  GKP +V  K+LE+G K+RV  
Sbjct: 43 IVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCA 99


>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
          {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 60.1 bits (146), Expect = 7e-14
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 8  CVQVKKHIKGG--EGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 65
             VKKH K        GGI   EA I  SNV + +  TGK  +VG ++ EDG KVR  +
Sbjct: 36 INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRF-EDGKKVRFFK 94


>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 110

 Score = 54.0 bits (130), Expect = 2e-11
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 10  QVKKHIKGG-EGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 65
            + K++K      +GG    E  +HAS V ++DP TGK  +V  +   DG KVRVA 
Sbjct: 50  VITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAV 105


>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 10/50 (20%)

Query: 10  QVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGT 59
             K   +           V  P+  SNV+V D       +      ED +
Sbjct: 79  LEKTDGE----------EVPRPLDTSNVRVTDLDLEDEKREARLESEDDS 118


>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId:
          317]}
          Length = 484

 Score = 24.5 bits (53), Expect = 3.9
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 62 RV--ARGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPV 98
          RV  ARG G  G      +I  +  +        + TPV
Sbjct: 49 RVVHARGTGVKGEFTASADISDL--SKATVFKSGEKTPV 85


>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 488

 Score = 23.7 bits (51), Expect = 8.5
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 62 RV--ARGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPV 98
          R   A G GA G      +I  I  +   +  G K T  
Sbjct: 53 RNPHAHGSGAFGYFEVTDDITDICGSAMFSKIG-KRTKC 90


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 23.7 bits (51), Expect = 8.5
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 62 RV--ARGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPV 98
          R   A+G GA G+     +I K       +  G K T +
Sbjct: 48 RRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVG-KKTEM 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 447,766
Number of extensions: 19130
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)