Query 033542
Match_columns 117
No_of_seqs 141 out of 1041
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.7 2.1E-17 4.6E-22 123.8 7.1 85 3-117 5-89 (237)
2 PF00335 Tetraspannin: Tetrasp 99.1 2E-11 4.4E-16 87.3 0.0 82 6-117 1-82 (221)
3 PF15345 TMEM51: Transmembrane 67.2 15 0.00033 28.1 5.0 16 82-97 62-77 (233)
4 KOG4433 Tweety transmembrane/c 64.1 10 0.00023 32.0 3.9 32 85-116 214-245 (526)
5 cd07912 Tweety_N N-terminal do 62.5 12 0.00025 31.0 3.9 27 89-115 217-243 (418)
6 PF11297 DUF3098: Protein of u 61.9 10 0.00022 23.6 2.7 25 14-38 6-30 (69)
7 PF04906 Tweety: Tweety; Inte 55.7 12 0.00026 30.6 2.9 28 89-116 194-221 (406)
8 PF04103 CD20: CD20-like famil 55.3 3.9 8.5E-05 27.7 0.0 29 87-115 37-65 (150)
9 PF05915 DUF872: Eukaryotic pr 53.2 21 0.00046 24.3 3.3 25 12-36 44-68 (115)
10 PF04156 IncA: IncA protein; 49.0 26 0.00056 25.0 3.5 22 12-33 5-26 (191)
11 KOG4556 Predicted membrane pro 44.7 30 0.00065 25.7 3.2 48 65-115 17-64 (205)
12 PF15125 TMEM238: TMEM238 prot 39.7 91 0.002 19.2 5.1 25 11-35 6-30 (65)
13 PRK11901 hypothetical protein; 39.1 36 0.00077 27.4 3.1 23 82-104 37-59 (327)
14 PF14927 Neurensin: Neurensin 39.0 87 0.0019 22.1 4.7 22 11-32 47-68 (140)
15 PF01601 Corona_S2: Coronaviru 34.6 13 0.00028 32.2 0.0 15 78-92 547-561 (610)
16 PF06724 DUF1206: Domain of Un 30.9 51 0.0011 20.0 2.3 21 15-35 47-67 (73)
17 PF10176 DUF2370: Protein of u 30.9 69 0.0015 24.6 3.4 32 77-108 193-224 (233)
18 PF11014 DUF2852: Protein of u 29.0 49 0.0011 22.6 2.1 23 10-32 13-36 (115)
19 PF04854 DUF624: Protein of un 28.8 62 0.0014 19.6 2.4 20 12-31 2-24 (77)
20 PF15048 OSTbeta: Organic solu 28.6 87 0.0019 21.8 3.3 30 8-37 36-65 (125)
21 PF06637 PV-1: PV-1 protein (P 27.5 77 0.0017 26.3 3.3 20 2-21 20-39 (442)
22 PF05640 NKAIN: Na,K-Atpase In 24.7 88 0.0019 23.5 2.9 34 79-115 34-67 (200)
23 PF06166 DUF979: Protein of un 24.3 1.2E+02 0.0026 24.2 3.7 26 15-40 2-27 (308)
24 PF15471 TMEM171: Transmembran 24.0 61 0.0013 25.7 2.0 27 6-34 108-134 (319)
25 TIGR01167 LPXTG_anchor LPXTG-m 23.7 75 0.0016 16.0 1.8 20 17-36 12-31 (34)
26 PRK07946 putative monovalent c 23.3 69 0.0015 23.2 2.1 20 15-34 4-23 (163)
27 PRK09400 secE preprotein trans 21.5 1.8E+02 0.0038 17.5 3.4 19 82-100 34-52 (61)
28 PF11381 DUF3185: Protein of u 21.4 83 0.0018 18.9 1.9 17 82-98 42-58 (59)
29 TIGR00327 secE_euk_arch protei 20.0 2E+02 0.0043 17.3 3.4 19 82-100 30-48 (61)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.71 E-value=2.1e-17 Score=123.78 Aligned_cols=85 Identities=34% Similarity=0.586 Sum_probs=71.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhheeEEecccccccCCcCCCCCCCcccccCcchhhhhhhhhcccccCchhhHHH
Q 033542 3 CRGCLECLLKLLNFLLTLAGLAMVGYGIYLFVEYKRVDNLGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIY 82 (117)
Q Consensus 3 c~~~lK~~l~~~N~l~~l~G~~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (117)
|.+|+||.++.+|+++|++|++++++|+|++.++....++... . ...++ +
T Consensus 5 ~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~-------------~--------------~~~~~---~ 54 (237)
T KOG3882|consen 5 GSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLES-------------D--------------FLVPA---Y 54 (237)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhcccc-------------c--------------hhcch---h
Confidence 4489999999999999999999999999999998766543210 0 02333 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhcC
Q 033542 83 LFIGVGVVLFVISCVGCISATTRNGCCLTCVSLVL 117 (117)
Q Consensus 83 ~~i~~G~~~~~v~~~Gc~ga~~es~~lL~~y~~~l 117 (117)
+++++|.+++++|++||+||.|||+|+|.+|++++
T Consensus 55 ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l 89 (237)
T KOG3882|consen 55 ILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILL 89 (237)
T ss_pred hhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.07 E-value=2e-11 Score=87.34 Aligned_cols=82 Identities=34% Similarity=0.663 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhheeEEecccccccCCcCCCCCCCcccccCcchhhhhhhhhcccccCchhhHHHHHH
Q 033542 6 CLECLLKLLNFLLTLAGLAMVGYGIYLFVEYKRVDNLGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFI 85 (117)
Q Consensus 6 ~lK~~l~~~N~l~~l~G~~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (117)
|+|+.++++|+++++.|++++++|+|.+...+....... + . .... .++++
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~---------------~---------~---~~~~---~~~~i 50 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSS---------------S---------F---ISYV---IIILI 50 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc---------------c---------c---hhHH---HHHHH
Confidence 789999999999999999999999999422211111100 0 0 0111 25778
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhcC
Q 033542 86 GVGVVLFVISCVGCISATTRNGCCLTCVSLVL 117 (117)
Q Consensus 86 ~~G~~~~~v~~~Gc~ga~~es~~lL~~y~~~l 117 (117)
.+|.++++++++|++|+.+|||+++..|.+++
T Consensus 51 ~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~ 82 (221)
T PF00335_consen 51 FIGIFILIISFLGCIGACRKNRCLLIIYIILL 82 (221)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence 89999999999999999999999999998753
No 3
>PF15345 TMEM51: Transmembrane protein 51
Probab=67.23 E-value=15 Score=28.12 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 033542 82 YLFIGVGVVLFVISCV 97 (117)
Q Consensus 82 ~~~i~~G~~~~~v~~~ 97 (117)
|+++++|+++++++++
T Consensus 62 yVLVG~Gv~LLLLSIC 77 (233)
T PF15345_consen 62 YVLVGSGVALLLLSIC 77 (233)
T ss_pred EehhhHHHHHHHHHHH
Confidence 7999999999999994
No 4
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=64.11 E-value=10 Score=32.04 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhhc
Q 033542 85 IGVGVVLFVISCVGCISATTRNGCCLTCVSLV 116 (117)
Q Consensus 85 i~~G~~~~~v~~~Gc~ga~~es~~lL~~y~~~ 116 (117)
+..=.+.+++-++++.|-.|+|||.+..|++.
T Consensus 214 v~lL~l~LvvC~v~vlglak~Skc~li~fsv~ 245 (526)
T KOG4433|consen 214 VLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVC 245 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 33445677888999999999999999998763
No 5
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=62.49 E-value=12 Score=31.02 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhh
Q 033542 89 VVLFVISCVGCISATTRNGCCLTCVSL 115 (117)
Q Consensus 89 ~~~~~v~~~Gc~ga~~es~~lL~~y~~ 115 (117)
.+.+++..++|+|..|.|||.+..+++
T Consensus 217 ~~~lviC~~~l~gl~r~Sr~~li~~s~ 243 (418)
T cd07912 217 SLLLVICLVLLVGLARHSRCLLIVFSV 243 (418)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 355677788899999999999998865
No 6
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=61.93 E-value=10 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhheeEEeccc
Q 033542 14 LNFLLTLAGLAMVGYGIYLFVEYKR 38 (117)
Q Consensus 14 ~N~l~~l~G~~li~~Giw~~~~~~~ 38 (117)
-|.++..+|++++.+|-++..-.++
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~~s 30 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGGGS 30 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCCCC
Confidence 4889999999999999999876544
No 7
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=55.66 E-value=12 Score=30.61 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhc
Q 033542 89 VVLFVISCVGCISATTRNGCCLTCVSLV 116 (117)
Q Consensus 89 ~~~~~v~~~Gc~ga~~es~~lL~~y~~~ 116 (117)
.+.+++.++++.|..|+|||.+..+.++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~ 221 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVL 221 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeec
Confidence 4666788889999999999999877653
No 8
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=55.27 E-value=3.9 Score=27.67 Aligned_cols=29 Identities=14% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhh
Q 033542 87 VGVVLFVISCVGCISATTRNGCCLTCVSL 115 (117)
Q Consensus 87 ~G~~~~~v~~~Gc~ga~~es~~lL~~y~~ 115 (117)
.|...++.|.+|.....|.+|+++..+..
T Consensus 37 ~G~~fiisG~l~i~s~k~~~~~lv~~~l~ 65 (150)
T PF04103_consen 37 GGIFFIISGILGIASEKKPTKCLVIASLV 65 (150)
T ss_dssp -----------------------------
T ss_pred HHHHHHhhHHHHHHHhcCCcccchHHHHH
Confidence 46677778888888888888888766543
No 9
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=53.18 E-value=21 Score=24.27 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhheeEEec
Q 033542 12 KLLNFLLTLAGLAMVGYGIYLFVEY 36 (117)
Q Consensus 12 ~~~N~l~~l~G~~li~~Giw~~~~~ 36 (117)
+.+-+.++++|.+++..|..+....
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556778899999999999887654
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.99 E-value=26 Score=25.04 Aligned_cols=22 Identities=18% Similarity=0.605 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhheeE
Q 033542 12 KLLNFLLTLAGLAMVGYGIYLF 33 (117)
Q Consensus 12 ~~~N~l~~l~G~~li~~Giw~~ 33 (117)
.+.+++..++|+++++.|+-..
T Consensus 5 ~i~~i~~iilgilli~~gI~~L 26 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAAL 26 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777654
No 11
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=44.71 E-value=30 Score=25.66 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=27.8
Q ss_pred hhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh
Q 033542 65 VSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCISATTRNGCCLTCVSL 115 (117)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~G~~~~~v~~~Gc~ga~~es~~lL~~y~~ 115 (117)
++++.+++|....-|.+.+.=.+=++ +-++|-.|+....+..+.+|..
T Consensus 17 ~~l~RqvFDflGyqWapilanFvhIi---ivIlGLFGtiQyR~ryl~~y~~ 64 (205)
T KOG4556|consen 17 LSLERQVFDFLGYQWAPILANFVHII---IVILGLFGTIQYRRRYLYTYAS 64 (205)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHhhhhhhcchhHHHHHHH
Confidence 34455666655444533444444444 4455667788777777877753
No 12
>PF15125 TMEM238: TMEM238 protein family
Probab=39.75 E-value=91 Score=19.21 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhheeEEe
Q 033542 11 LKLLNFLLTLAGLAMVGYGIYLFVE 35 (117)
Q Consensus 11 l~~~N~l~~l~G~~li~~Giw~~~~ 35 (117)
.+.+-+++=++|+.++..|+....+
T Consensus 6 ~f~laV~fD~vGl~~Ll~GiFa~l~ 30 (65)
T PF15125_consen 6 FFWLAVVFDVVGLVMLLTGIFAPLD 30 (65)
T ss_pred hhHHHHHHHHhhHHHHHHHHhcchh
Confidence 3457778889999999999987763
No 13
>PRK11901 hypothetical protein; Reviewed
Probab=39.07 E-value=36 Score=27.39 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 033542 82 YLFIGVGVVLFVISCVGCISATT 104 (117)
Q Consensus 82 ~~~i~~G~~~~~v~~~Gc~ga~~ 104 (117)
+++|++|++++++=++|...|+|
T Consensus 37 h~MiGiGilVLlLLIi~IgSALk 59 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALK 59 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 69999999999999999999886
No 14
>PF14927 Neurensin: Neurensin
Probab=38.96 E-value=87 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhee
Q 033542 11 LKLLNFLLTLAGLAMVGYGIYL 32 (117)
Q Consensus 11 l~~~N~l~~l~G~~li~~Giw~ 32 (117)
-++..+++.+.|++.+.+|--+
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vgY~v 68 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVGYLV 68 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 5677889999999999998664
No 15
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=34.61 E-value=13 Score=32.19 Aligned_cols=15 Identities=27% Similarity=0.910 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH
Q 033542 78 AWFIYLFIGVGVVLF 92 (117)
Q Consensus 78 ~~~~~~~i~~G~~~~ 92 (117)
||++++.|+++.+.+
T Consensus 547 PWyVWL~i~~~li~~ 561 (610)
T PF01601_consen 547 PWYVWLAIILALIAF 561 (610)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 477777777766544
No 16
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=30.93 E-value=51 Score=19.98 Aligned_cols=21 Identities=48% Similarity=1.043 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhheeEEe
Q 033542 15 NFLLTLAGLAMVGYGIYLFVE 35 (117)
Q Consensus 15 N~l~~l~G~~li~~Giw~~~~ 35 (117)
..+.+++|+.++++|+|...+
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999997653
No 17
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=30.92 E-value=69 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.473 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 033542 77 KAWFIYLFIGVGVVLFVISCVGCISATTRNGC 108 (117)
Q Consensus 77 ~~~~~~~~i~~G~~~~~v~~~Gc~ga~~es~~ 108 (117)
.+|..|+++++|.++++-|+.+.+=+.|--|.
T Consensus 193 ~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er~ 224 (233)
T PF10176_consen 193 NPWLAYILMAFGWFIFIRSIIDYWRVKRMERL 224 (233)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777999999999999999999988875553
No 18
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=29.02 E-value=49 Score=22.64 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=17.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhee
Q 033542 10 LLKLLNF-LLTLAGLAMVGYGIYL 32 (117)
Q Consensus 10 ~l~~~N~-l~~l~G~~li~~Giw~ 32 (117)
.+.++-+ +||=+|++++++-+|-
T Consensus 13 a~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 13 AAMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 4799999999999997
No 19
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=28.78 E-value=62 Score=19.55 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=14.3
Q ss_pred HHHHHHHH---HHHHHHHHHhhe
Q 033542 12 KLLNFLLT---LAGLAMVGYGIY 31 (117)
Q Consensus 12 ~~~N~l~~---l~G~~li~~Giw 31 (117)
..+|++++ +.|+.++++|--
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigPA 24 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGPA 24 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788877 888777766643
No 20
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=28.59 E-value=87 Score=21.77 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhheeEEecc
Q 033542 8 ECLLKLLNFLLTLAGLAMVGYGIYLFVEYK 37 (117)
Q Consensus 8 K~~l~~~N~l~~l~G~~li~~Giw~~~~~~ 37 (117)
+|.++.+.++..++|..+++-++-+....+
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~ANRnrK 65 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQANRNRK 65 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHhccccc
Confidence 688999999999999999999998865543
No 21
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.51 E-value=77 Score=26.29 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=16.6
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 033542 2 ACRGCLECLLKLLNFLLTLA 21 (117)
Q Consensus 2 ~c~~~lK~~l~~~N~l~~l~ 21 (117)
||.-.+||++++..++-+++
T Consensus 20 gC~YYlryfFlF~SLIQ~LI 39 (442)
T PF06637_consen 20 GCWYYLRYFFLFVSLIQFLI 39 (442)
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 68889999999999986643
No 22
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=24.74 E-value=88 Score=23.47 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh
Q 033542 79 WFIYLFIGVGVVLFVISCVGCISATTRNGCCLTCVSL 115 (117)
Q Consensus 79 ~~~~~~i~~G~~~~~v~~~Gc~ga~~es~~lL~~y~~ 115 (117)
|.+.+.-..-++. -++|..||..-++..+..|.+
T Consensus 34 WaPIl~NF~hIi~---vIlGlFG~~QyR~ryi~~Y~v 67 (200)
T PF05640_consen 34 WAPILANFLHIIF---VILGLFGAIQYRPRYIIVYAV 67 (200)
T ss_pred HHHHHHHHHHHHH---HHHHHhhheeecchHHHHHHH
Confidence 4334444444444 456667899888888888865
No 23
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=24.30 E-value=1.2e+02 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhheeEEeccccc
Q 033542 15 NFLLTLAGLAMVGYGIYLFVEYKRVD 40 (117)
Q Consensus 15 N~l~~l~G~~li~~Giw~~~~~~~~~ 40 (117)
+.+++++|+.++..+.....|+++-.
T Consensus 2 e~~Y~l~Gl~~~~~a~~~~~Dk~np~ 27 (308)
T PF06166_consen 2 EIFYILIGLVFIITAVRSLRDKTNPK 27 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 56889999999999999998875543
No 24
>PF15471 TMEM171: Transmembrane protein family 171
Probab=24.03 E-value=61 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhheeEE
Q 033542 6 CLECLLKLLNFLLTLAGLAMVGYGIYLFV 34 (117)
Q Consensus 6 ~lK~~l~~~N~l~~l~G~~li~~Giw~~~ 34 (117)
+.+++ +|.++|...|..+-.+|+|+--
T Consensus 108 FaQ~L--IFGFLFLTSGmLISvLGiWVPG 134 (319)
T PF15471_consen 108 FAQFL--IFGFLFLTSGMLISVLGIWVPG 134 (319)
T ss_pred hhHHH--HHHHHHHhhhhhhhhheeeecC
Confidence 44444 6779999999999999999843
No 25
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.73 E-value=75 Score=16.02 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhheeEEec
Q 033542 17 LLTLAGLAMVGYGIYLFVEY 36 (117)
Q Consensus 17 l~~l~G~~li~~Giw~~~~~ 36 (117)
.+.+.|+++++.+.|....+
T Consensus 12 ~~~~~G~~l~~~~~~~~~~r 31 (34)
T TIGR01167 12 LLLLLGLLLLGLGGLLLRKR 31 (34)
T ss_pred HHHHHHHHHHHHHHHHheec
Confidence 45566777777777665443
No 26
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.34 E-value=69 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhheeEE
Q 033542 15 NFLLTLAGLAMVGYGIYLFV 34 (117)
Q Consensus 15 N~l~~l~G~~li~~Giw~~~ 34 (117)
|++..+...++.++|+|+..
T Consensus 4 ~l~~~i~~gvL~~~G~Ylll 23 (163)
T PRK07946 4 NLGLLVAIGVLTSAGVYLLL 23 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555666554
No 27
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=21.51 E-value=1.8e+02 Score=17.49 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033542 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~~i~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-++++|++|+.
T Consensus 34 ~ia~~~~iG~~i~G~iGf~ 52 (61)
T PRK09400 34 LVAKVTGLGILLIGLIGFI 52 (61)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667778888889999875
No 28
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.43 E-value=83 Score=18.91 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033542 82 YLFIGVGVVLFVISCVG 98 (117)
Q Consensus 82 ~~~i~~G~~~~~v~~~G 98 (117)
...++.|++..++|+.+
T Consensus 42 ~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 42 IWYLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHHHhHHHHHHHHHhh
Confidence 46677788888887754
No 29
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=20.01 E-value=2e+02 Score=17.34 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033542 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~~i~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-++++|++|+.
T Consensus 30 ~iak~t~iG~~i~G~IGf~ 48 (61)
T TIGR00327 30 KVAKVTGIGIIIVGIIGYI 48 (61)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677778888889999875
Done!