Query 033542
Match_columns 117
No_of_seqs 141 out of 1041
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 05:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rh5_B Preprotein translocase 18.7 1.4E+02 0.0048 17.8 3.5 19 82-100 36-54 (74)
2 2ww9_B Protein transport prote 16.9 1.6E+02 0.0055 17.9 3.5 20 81-100 48-67 (80)
3 2klu_A T-cell surface glycopro 16.0 1.5E+02 0.005 17.6 3.0 20 83-102 10-29 (70)
4 3mp7_B Preprotein translocase 13.1 2.2E+02 0.0074 16.2 3.5 19 82-100 32-50 (61)
5 2wwb_B SEC61gamma, protein tra 11.7 1.9E+02 0.0066 16.9 2.7 19 82-100 35-53 (68)
6 2ari_A Envelope polyprotein GP 10.4 1.2E+02 0.004 16.0 1.2 16 88-103 4-19 (39)
7 1y29_A Huwentoxin-X; A double- 7.2 36 0.0012 16.6 -1.5 10 99-108 18-27 (28)
8 2pjv_A Envelope glycoprotein; 5.8 94 0.0032 15.6 -0.4 12 90-101 5-16 (31)
9 2l9x_A Uncharacterized protein 4.4 2.2E+02 0.0077 13.7 0.4 8 96-103 6-13 (30)
10 1zza_A Stannin, AG8_1; helix, 3.9 6.2E+02 0.021 15.2 2.2 23 16-38 20-42 (90)
No 1
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=18.66 E-value=1.4e+02 Score=17.82 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033542 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~~i~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-++++|++|+.
T Consensus 36 ~iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 36 AVAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777888998875
No 2
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=16.91 E-value=1.6e+02 Score=17.90 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033542 81 IYLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 81 ~~~~i~~G~~~~~v~~~Gc~ 100 (117)
.-+.-++|+-++++|++|+.
T Consensus 48 ~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 48 TKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677788888889999975
No 3
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=15.98 E-value=1.5e+02 Score=17.60 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033542 83 LFIGVGVVLFVISCVGCISA 102 (117)
Q Consensus 83 ~~i~~G~~~~~v~~~Gc~ga 102 (117)
+++++|...-++.+.|.|--
T Consensus 10 ~LivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 10 ALIVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 33677777777777665543
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=13.06 E-value=2.2e+02 Score=16.24 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033542 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~~i~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|.-++++|++|+.
T Consensus 32 ~iak~~~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 32 RAAKITGLGIILIGLIGML 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666677777888888875
No 5
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=11.74 E-value=1.9e+02 Score=16.89 Aligned_cols=19 Identities=5% Similarity=0.291 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033542 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~~i~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-++++|++|+.
T Consensus 35 ~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 35 KIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677778888889999976
No 6
>2ari_A Envelope polyprotein GP160; HIV, fusion, peptide, domain, membrane, micelle, viral protein; NMR {Human immunodeficiency virus 1} PDB: 2jnr_B
Probab=10.38 E-value=1.2e+02 Score=16.02 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 033542 88 GVVLFVISCVGCISAT 103 (117)
Q Consensus 88 G~~~~~v~~~Gc~ga~ 103 (117)
|...++++|+|-.|+.
T Consensus 4 ~lg~~fLGfLgaaGst 19 (39)
T 2ari_A 4 GIGALFLGFLGAAGST 19 (39)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eeehHHhhhhhhhhcc
Confidence 3445677888777654
No 7
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=7.21 E-value=36 Score=16.61 Aligned_cols=10 Identities=30% Similarity=0.890 Sum_probs=5.5
Q ss_pred HHHhhcccch
Q 033542 99 CISATTRNGC 108 (117)
Q Consensus 99 c~ga~~es~~ 108 (117)
|||...+|+|
T Consensus 18 CCG~Cs~nkC 27 (28)
T 1y29_A 18 CCGVCSHNKC 27 (28)
T ss_dssp BSSCBSSSCB
T ss_pred cccccccCcc
Confidence 4555555554
No 8
>2pjv_A Envelope glycoprotein; HIV, GP41, fusion, peptide, domain, membrane, DPC, viral protein; NMR {Human immunodeficiency virus 1}
Probab=5.82 E-value=94 Score=15.59 Aligned_cols=12 Identities=8% Similarity=0.238 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 033542 90 VLFVISCVGCIS 101 (117)
Q Consensus 90 ~~~~v~~~Gc~g 101 (117)
-.++++|+|-.|
T Consensus 5 Ga~FLGFLgaAG 16 (31)
T 2pjv_A 5 GALFLGFLGAAG 16 (31)
T ss_dssp HHHHHTHHHHTC
T ss_pred hhHHHHHhhccc
Confidence 345566666543
No 9
>2l9x_A Uncharacterized protein; thioether bridges, helical loops, crosslinked, post-translat modified, antimicrobial protein; HET: DTH; NMR {Bacillus cereus 95}
Probab=4.39 E-value=2.2e+02 Score=13.65 Aligned_cols=8 Identities=38% Similarity=1.091 Sum_probs=4.6
Q ss_pred HHHHHHhh
Q 033542 96 CVGCISAT 103 (117)
Q Consensus 96 ~~Gc~ga~ 103 (117)
.+||.|.+
T Consensus 6 vigcigsc 13 (30)
T 2l9x_A 6 VIGCIGSC 13 (30)
T ss_dssp HHHHTTHH
T ss_pred EEeeeeeE
Confidence 35666655
No 10
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=3.89 E-value=6.2e+02 Score=15.18 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhheeEEeccc
Q 033542 16 FLLTLAGLAMVGYGIYLFVEYKR 38 (117)
Q Consensus 16 ~l~~l~G~~li~~Giw~~~~~~~ 38 (117)
++..+.++..+..|.|-.....+
T Consensus 20 iliavaalg~li~gcwcylrlqr 42 (90)
T 1zza_A 20 ILIAIAALGALILGCWCYLRLQR 42 (90)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788889998765444
Done!