BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033543
MACRGCLECLLKLLNFLLTLAGLAMVGYGIYLFVEYKRVDNLGTVSPVSGDEGFVQLGRP
MLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCISATTRNGCCLTCVSLVL

High Scoring Gene Products

Symbol, full name Information P value
TOM2A
tobamovirus multiplication 2A
protein from Arabidopsis thaliana 6.7e-33
AT2G20230 protein from Arabidopsis thaliana 1.1e-08
AT2G20740 protein from Arabidopsis thaliana 2.5e-07
TSPAN5
Tetraspanin-5
protein from Homo sapiens 0.00095

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033543
        (117 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2033718 - symbol:TOM2A "tobamovirus multiplica...   359  6.7e-33   1
TAIR|locus:2038997 - symbol:AT2G20230 species:3702 "Arabi...   109  1.1e-08   2
TAIR|locus:2051348 - symbol:AT2G20740 "AT2G20740" species...   120  2.5e-07   1
UNIPROTKB|H0Y8W4 - symbol:TSPAN5 "Tetraspanin-5" species:...    63  0.00095   2


>TAIR|locus:2033718 [details] [associations]
            symbol:TOM2A "tobamovirus multiplication 2A" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0016020 "membrane"
            evidence=ISS] [GO:0046786 "viral replication complex formation and
            maintenance" evidence=IMP] [GO:0005773 "vacuole" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] [GO:0005794 "Golgi
            apparatus" evidence=IDA] InterPro:IPR018499 Pfam:PF00335
            GO:GO:0016021 EMBL:CP002684 GO:GO:0009506 GO:GO:0005794
            GO:GO:0005773 GO:GO:0016020 HOGENOM:HOG000029054 GO:GO:0046786
            EMBL:AF334723 EMBL:AF385687 EMBL:AY088560 EMBL:AB085684
            IPI:IPI00522211 RefSeq:NP_001031127.1 RefSeq:NP_564399.1
            RefSeq:NP_973952.1 UniGene:At.15525 IntAct:Q9C5W7 STRING:Q9C5W7
            PRIDE:Q9C5W7 ProMEX:Q9C5W7 EnsemblPlants:AT1G32400.1
            EnsemblPlants:AT1G32400.2 EnsemblPlants:AT1G32400.3 GeneID:840133
            KEGG:ath:AT1G32400 TAIR:At1g32400 InParanoid:Q9C5W7 OMA:TSEFTYN
            PhylomeDB:Q9C5W7 ProtClustDB:CLSN2688198 ArrayExpress:Q9C5W7
            Genevestigator:Q9C5W7 Uniprot:Q9C5W7
        Length = 280

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 68/118 (57%), Positives = 81/118 (68%)

Query:     1 MACRGCXXXXXXXXXXXXXXXXXAMVGYGIYLFVEYKRV-DNLGTVSPVSGDEGFVQLGR 59
             MACRGC                  M+GYGIYLFVEYKRV DN  T    +GD+ +V  GR
Sbjct:     1 MACRGCLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGR 60

Query:    60 PMLMAVSLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCISATTRNGCCLTCVSLVL 117
             P+LMAVSL+ +IFD LPKAWFIYLFIG+GV LFVISC GC+   +R+ CCL+C SL+L
Sbjct:    61 PILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLL 118


>TAIR|locus:2038997 [details] [associations]
            symbol:AT2G20230 species:3702 "Arabidopsis thaliana"
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0005773
            "vacuole" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0009627 "systemic acquired resistance"
            evidence=RCA] [GO:0031347 "regulation of defense response"
            evidence=RCA] InterPro:IPR000301 InterPro:IPR018499 Pfam:PF00335
            PRINTS:PR00259 PROSITE:PS00421 GO:GO:0016021 GO:GO:0005774
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006569
            UniGene:At.13955 EMBL:AY054570 EMBL:AY064662 EMBL:AY088475
            IPI:IPI00520899 PIR:F84586 RefSeq:NP_565468.1 UniGene:At.48496
            PaxDb:Q93XY5 PRIDE:Q93XY5 EnsemblPlants:AT2G20230.1 GeneID:816542
            KEGG:ath:AT2G20230 TAIR:At2g20230 eggNOG:NOG310766
            HOGENOM:HOG000029054 InParanoid:Q93XY5 OMA:CKWVGIT PhylomeDB:Q93XY5
            ProtClustDB:CLSN2685757 Genevestigator:Q93XY5 Uniprot:Q93XY5
        Length = 270

 Score = 109 (43.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query:    75 LPKAWFIYLFIGVGVVLFVISCVGCISATTRNGCCLTCVSLV 116
             LP  WFIY F+ VG+++ +++ +G I+A   NGCCL   S++
Sbjct:    95 LPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSIL 136

 Score = 44 (20.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query:    24 AMVGYGIYLFVEYKR---VDNLGTVSPVSGDEGFVQLGRPMLMAVSLADSI 71
             +++ Y I++  EY R   VD   + S  SG E    +  P+   +    SI
Sbjct:    27 SIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSEPLKNPIDFVASI 77


>TAIR|locus:2051348 [details] [associations]
            symbol:AT2G20740 "AT2G20740" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016021 "integral to membrane" evidence=IEA]
            InterPro:IPR018499 Pfam:PF00335 PROSITE:PS00421 GO:GO:0016021
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006234
            HOGENOM:HOG000029054 EMBL:AF462842 EMBL:AY054217 EMBL:AY097350
            EMBL:AK175553 EMBL:AK176086 IPI:IPI00521463 IPI:IPI00533713
            IPI:IPI00543284 PIR:G84592 RefSeq:NP_179667.2 RefSeq:NP_973493.1
            RefSeq:NP_973494.1 UniGene:At.23632 UniGene:At.71303 IntAct:Q940P5
            PRIDE:Q940P5 EnsemblPlants:AT2G20740.1 GeneID:816603
            KEGG:ath:AT2G20740 TAIR:At2g20740 eggNOG:NOG321653
            InParanoid:Q940P5 OMA:ICKWIGL PhylomeDB:Q940P5
            ProtClustDB:CLSN2690819 Genevestigator:Q940P5 Uniprot:Q940P5
        Length = 221

 Score = 120 (47.3 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query:    76 PKAWFIYLFIGVGVVLFVISCVGCISATTRNGCCL 110
             P  WFIY F+G+G +L V++C G I+A T NGCCL
Sbjct:    53 PVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCL 87


>UNIPROTKB|H0Y8W4 [details] [associations]
            symbol:TSPAN5 "Tetraspanin-5" species:9606 "Homo sapiens"
            [GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000301
            InterPro:IPR018499 InterPro:IPR018503 Pfam:PF00335 PRINTS:PR00259
            PROSITE:PS00421 GO:GO:0016021 EMBL:AC058823 HGNC:HGNC:17753
            EMBL:AC074120 EMBL:AC108159 EMBL:AC114811 Ensembl:ENST00000515440
            Uniprot:H0Y8W4
        Length = 87

 Score = 63 (27.2 bits), Expect = 0.00095, Sum P(2) = 0.00095
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query:    81 IYLFIGVGVVLFVISCVGCISATTRN 106
             ++LF+ VG V+F++   GCI A   N
Sbjct:    53 VWLFLVVGGVMFILGFAGCIGALREN 78

 Score = 31 (16.0 bits), Expect = 0.00095, Sum P(2) = 0.00095
 Identities = 5/25 (20%), Positives = 15/25 (60%)

Query:    26 VGYGIYLFVEYKRVDNLGTVSPVSG 50
             +G G++ + E   + N+ +++ + G
Sbjct:    25 LGIGLWAWNEKGVLSNISSITDLGG 49


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.332   0.146   0.474    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117       100   0.00091  102 3  11 21  0.43    29
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  110 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.93u 0.12s 11.05t   Elapsed:  00:00:00
  Total cpu time:  10.93u 0.12s 11.05t   Elapsed:  00:00:00
  Start:  Thu May  9 18:05:16 2013   End:  Thu May  9 18:05:16 2013

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