Query 033543
Match_columns 117
No_of_seqs 139 out of 1037
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:30:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.7 3.5E-17 7.5E-22 122.6 6.9 85 3-117 5-89 (237)
2 PF00335 Tetraspannin: Tetrasp 99.1 2.6E-11 5.7E-16 86.7 0.0 82 6-117 1-82 (221)
3 PF15345 TMEM51: Transmembrane 64.8 17 0.00036 27.9 4.8 16 82-97 62-77 (233)
4 cd07912 Tweety_N N-terminal do 64.4 10 0.00022 31.4 3.8 29 87-115 215-243 (418)
5 PF11297 DUF3098: Protein of u 62.9 13 0.00029 23.1 3.3 25 14-38 6-30 (69)
6 KOG4433 Tweety transmembrane/c 62.5 12 0.00025 31.8 3.8 32 85-116 214-245 (526)
7 PF05915 DUF872: Eukaryotic pr 54.0 22 0.00048 24.1 3.6 26 11-36 43-68 (115)
8 PF04103 CD20: CD20-like famil 50.8 5.1 0.00011 27.1 0.0 29 87-115 37-65 (150)
9 PF04156 IncA: IncA protein; 47.1 32 0.00069 24.5 3.7 23 12-34 5-27 (191)
10 PRK11901 hypothetical protein; 46.8 23 0.00051 28.4 3.1 23 82-104 37-59 (327)
11 PF04906 Tweety: Tweety; Inte 45.1 23 0.00049 29.0 2.9 28 89-116 194-221 (406)
12 PF01601 Corona_S2: Coronaviru 43.6 7.7 0.00017 33.5 0.0 15 78-92 547-561 (610)
13 KOG4556 Predicted membrane pro 42.9 32 0.0007 25.5 3.1 47 66-115 18-64 (205)
14 PF10176 DUF2370: Protein of u 35.0 52 0.0011 25.2 3.3 32 77-108 193-224 (233)
15 PF14927 Neurensin: Neurensin 30.5 1.5E+02 0.0032 20.9 4.8 23 11-33 47-69 (140)
16 PF05640 NKAIN: Na,K-Atpase In 30.3 59 0.0013 24.4 2.8 26 90-115 42-67 (200)
17 PF06724 DUF1206: Domain of Un 29.9 55 0.0012 19.8 2.3 20 16-35 48-67 (73)
18 PF11014 DUF2852: Protein of u 28.9 50 0.0011 22.6 2.1 16 17-32 21-36 (115)
19 PF04854 DUF624: Protein of un 26.8 71 0.0015 19.3 2.4 20 12-31 2-24 (77)
20 PF15048 OSTbeta: Organic solu 26.7 98 0.0021 21.5 3.3 29 8-36 36-64 (125)
21 PF03597 CcoS: Cytochrome oxid 26.4 1.3E+02 0.0028 17.0 3.6 26 82-107 4-29 (45)
22 PF15125 TMEM238: TMEM238 prot 25.2 1.7E+02 0.0038 18.0 5.2 24 12-35 7-30 (65)
23 PF10812 DUF2561: Protein of u 25.0 3E+02 0.0066 20.7 6.1 59 10-96 23-81 (207)
24 PF15471 TMEM171: Transmembran 23.2 63 0.0014 25.6 2.0 26 6-33 108-133 (319)
25 TIGR01167 LPXTG_anchor LPXTG-m 22.8 82 0.0018 15.9 1.8 19 17-35 12-30 (34)
26 TIGR00847 ccoS cytochrome oxid 21.9 1.8E+02 0.0039 16.9 3.8 26 82-107 5-30 (51)
27 PF06637 PV-1: PV-1 protein (P 21.3 1.6E+02 0.0034 24.5 3.9 19 2-20 20-38 (442)
28 PRK09400 secE preprotein trans 21.3 1.8E+02 0.004 17.4 3.4 19 82-100 34-52 (61)
29 PRK12585 putative monovalent c 20.9 1.5E+02 0.0032 22.2 3.4 19 81-99 9-27 (197)
30 PF13706 PepSY_TM_3: PepSY-ass 20.7 1.5E+02 0.0033 15.6 3.3 24 82-105 10-33 (37)
31 PF11381 DUF3185: Protein of u 20.3 1.6E+02 0.0034 17.7 2.9 17 82-98 42-58 (59)
32 PRK07946 putative monovalent c 20.3 88 0.0019 22.7 2.1 20 15-34 4-23 (163)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.70 E-value=3.5e-17 Score=122.58 Aligned_cols=85 Identities=34% Similarity=0.586 Sum_probs=71.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHheeEEecccccccCCcCCCCCCCcccccCcchhhhhhhhhcccccCchhhHHH
Q 033543 3 CRGCLECLLKLLNFLLTLAGLAMVGYGIYLFVEYKRVDNLGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIY 82 (117)
Q Consensus 3 c~~~lk~~l~~~N~lf~l~G~~li~~giw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (117)
|.+|+|+.++.+|+++|+.|++++++|+|++.++....++... . ...++ +
T Consensus 5 ~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~-------------~--------------~~~~~---~ 54 (237)
T KOG3882|consen 5 GSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLES-------------D--------------FLVPA---Y 54 (237)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhcccc-------------c--------------hhcch---h
Confidence 4489999999999999999999999999999998765533210 0 02333 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcC
Q 033543 83 LFIGVGVVLFVISCVGCISATTRNGCCLTCVSLVL 117 (117)
Q Consensus 83 ~li~~G~~~~~v~~~Gc~Ga~~es~~lL~~y~~~l 117 (117)
+++++|++++++|++||+||.|||+|+|.+|++++
T Consensus 55 ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l 89 (237)
T KOG3882|consen 55 ILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILL 89 (237)
T ss_pred hhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.05 E-value=2.6e-11 Score=86.71 Aligned_cols=82 Identities=34% Similarity=0.702 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheeEEecccccccCCcCCCCCCCcccccCcchhhhhhhhhcccccCchhhHHHHHH
Q 033543 6 CLECLLKLLNFLLTLAGLAMVGYGIYLFVEYKRVDNLGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFI 85 (117)
Q Consensus 6 ~lk~~l~~~N~lf~l~G~~li~~giw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 85 (117)
|+|+.++++|+++++.|++++++|+|.+...+....... + .... ..++++
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~---------------~-------------~~~~--~~~~~i 50 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSS---------------S-------------FISY--VIIILI 50 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc---------------c-------------chhH--HHHHHH
Confidence 789999999999999999999999999422111111100 0 0111 125778
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhhcC
Q 033543 86 GVGVVLFVISCVGCISATTRNGCCLTCVSLVL 117 (117)
Q Consensus 86 ~~G~~~~~v~~~Gc~Ga~~es~~lL~~y~~~l 117 (117)
.+|.++++++++|++|+.+||++++..|.+++
T Consensus 51 ~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~ 82 (221)
T PF00335_consen 51 FIGIFILIISFLGCIGACRKNRCLLIIYIILL 82 (221)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence 89999999999999999999999999998753
No 3
>PF15345 TMEM51: Transmembrane protein 51
Probab=64.79 E-value=17 Score=27.86 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 033543 82 YLFIGVGVVLFVISCV 97 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~ 97 (117)
|+++++|++++++++|
T Consensus 62 yVLVG~Gv~LLLLSIC 77 (233)
T PF15345_consen 62 YVLVGSGVALLLLSIC 77 (233)
T ss_pred EehhhHHHHHHHHHHH
Confidence 7999999999999994
No 4
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=64.38 E-value=10 Score=31.36 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhhh
Q 033543 87 VGVVLFVISCVGCISATTRNGCCLTCVSL 115 (117)
Q Consensus 87 ~G~~~~~v~~~Gc~Ga~~es~~lL~~y~~ 115 (117)
+=++.+++..++|+|..|.|||.+..+++
T Consensus 215 lL~~~lviC~~~l~gl~r~Sr~~li~~s~ 243 (418)
T cd07912 215 LLSLLLVICLVLLVGLARHSRCLLIVFSV 243 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33455677788899999999999998864
No 5
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=62.88 E-value=13 Score=23.11 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHheeEEeccc
Q 033543 14 LNFLLTLAGLAMVGYGIYLFVEYKR 38 (117)
Q Consensus 14 ~N~lf~l~G~~li~~giw~~~~~~~ 38 (117)
-|.+++..|++++.+|-++..-.++
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~~s 30 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGGGS 30 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCCCC
Confidence 4889999999999999999876443
No 6
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=62.46 E-value=12 Score=31.77 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhhhc
Q 033543 85 IGVGVVLFVISCVGCISATTRNGCCLTCVSLV 116 (117)
Q Consensus 85 i~~G~~~~~v~~~Gc~Ga~~es~~lL~~y~~~ 116 (117)
+..=.+.+++-++++.|-.|+|||++..|+++
T Consensus 214 v~lL~l~LvvC~v~vlglak~Skc~li~fsv~ 245 (526)
T KOG4433|consen 214 VLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVC 245 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 33345677888899999999999999988763
No 7
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=54.03 E-value=22 Score=24.12 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHheeEEec
Q 033543 11 LKLLNFLLTLAGLAMVGYGIYLFVEY 36 (117)
Q Consensus 11 l~~~N~lf~l~G~~li~~giw~~~~~ 36 (117)
-..+-+.++++|.+++..|..+....
T Consensus 43 ~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 43 SIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556777899999999998887653
No 8
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=50.84 E-value=5.1 Score=27.08 Aligned_cols=29 Identities=14% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhhh
Q 033543 87 VGVVLFVISCVGCISATTRNGCCLTCVSL 115 (117)
Q Consensus 87 ~G~~~~~v~~~Gc~Ga~~es~~lL~~y~~ 115 (117)
.|...++.|.+|.....|.+++++..+..
T Consensus 37 ~G~~fiisG~l~i~s~k~~~~~lv~~~l~ 65 (150)
T PF04103_consen 37 GGIFFIISGILGIASEKKPTKCLVIASLV 65 (150)
T ss_dssp -----------------------------
T ss_pred HHHHHHhhHHHHHHHhcCCcccchHHHHH
Confidence 46677778888888888888888766543
No 9
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.13 E-value=32 Score=24.54 Aligned_cols=23 Identities=22% Similarity=0.628 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHheeEE
Q 033543 12 KLLNFLLTLAGLAMVGYGIYLFV 34 (117)
Q Consensus 12 ~~~N~lf~l~G~~li~~giw~~~ 34 (117)
.+.+++..++|+++++.|+-...
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv 27 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888887777776643
No 10
>PRK11901 hypothetical protein; Reviewed
Probab=46.83 E-value=23 Score=28.41 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 033543 82 YLFIGVGVVLFVISCVGCISATT 104 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~ 104 (117)
+++|++|++++++=++|...|+|
T Consensus 37 h~MiGiGilVLlLLIi~IgSALk 59 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALK 59 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 69999999999999999998886
No 11
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=45.07 E-value=23 Score=29.01 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhhc
Q 033543 89 VVLFVISCVGCISATTRNGCCLTCVSLV 116 (117)
Q Consensus 89 ~~~~~v~~~Gc~Ga~~es~~lL~~y~~~ 116 (117)
.+.+++.++++.|..|+|||.+..+.++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~ 221 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVL 221 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeec
Confidence 4666788889999999999999876653
No 12
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=43.64 E-value=7.7 Score=33.51 Aligned_cols=15 Identities=27% Similarity=0.910 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH
Q 033543 78 AWFIYLFIGVGVVLF 92 (117)
Q Consensus 78 ~~~~~~li~~G~~~~ 92 (117)
||++|+.|+++.+.+
T Consensus 547 PWyVWL~i~~~li~~ 561 (610)
T PF01601_consen 547 PWYVWLAIILALIAF 561 (610)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 487888877766554
No 13
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=42.94 E-value=32 Score=25.47 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=26.8
Q ss_pred hhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhh
Q 033543 66 SLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCISATTRNGCCLTCVSL 115 (117)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~li~~G~~~~~v~~~Gc~Ga~~es~~lL~~y~~ 115 (117)
+++.+++|.....|.+.+ .-.+=+++-+.|-.|+....+..+.+|..
T Consensus 18 ~l~RqvFDflGyqWapil---anFvhIiivIlGLFGtiQyR~ryl~~y~~ 64 (205)
T KOG4556|consen 18 SLERQVFDFLGYQWAPIL---ANFVHIIIVILGLFGTIQYRRRYLYTYAS 64 (205)
T ss_pred HHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHhhhhhhcchhHHHHHHH
Confidence 344455554444443333 34444444556667888888888877753
No 14
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=35.04 E-value=52 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.473 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 033543 77 KAWFIYLFIGVGVVLFVISCVGCISATTRNGC 108 (117)
Q Consensus 77 ~~~~~~~li~~G~~~~~v~~~Gc~Ga~~es~~ 108 (117)
.+|..|+++++|.++++-++.+++=+.|--|.
T Consensus 193 ~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er~ 224 (233)
T PF10176_consen 193 NPWLAYILMAFGWFIFIRSIIDYWRVKRMERL 224 (233)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777999999999999999999988875543
No 15
>PF14927 Neurensin: Neurensin
Probab=30.53 E-value=1.5e+02 Score=20.93 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHheeE
Q 033543 11 LKLLNFLLTLAGLAMVGYGIYLF 33 (117)
Q Consensus 11 l~~~N~lf~l~G~~li~~giw~~ 33 (117)
-++.-+++++.|++.+.+|--+-
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vgY~vP 69 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVGYLVP 69 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhcccC
Confidence 56778889999999999986643
No 16
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=30.33 E-value=59 Score=24.37 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhh
Q 033543 90 VLFVISCVGCISATTRNGCCLTCVSL 115 (117)
Q Consensus 90 ~~~~v~~~Gc~Ga~~es~~lL~~y~~ 115 (117)
+-+++-++|..||..-++..+..|.+
T Consensus 42 ~hIi~vIlGlFG~~QyR~ryi~~Y~v 67 (200)
T PF05640_consen 42 LHIIFVILGLFGAIQYRPRYIIVYAV 67 (200)
T ss_pred HHHHHHHHHHhhheeecchHHHHHHH
Confidence 33344466678899888888888864
No 17
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=29.87 E-value=55 Score=19.81 Aligned_cols=20 Identities=50% Similarity=1.090 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHheeEEe
Q 033543 16 FLLTLAGLAMVGYGIYLFVE 35 (117)
Q Consensus 16 ~lf~l~G~~li~~giw~~~~ 35 (117)
.+.+++|+.++++|+|...+
T Consensus 48 ~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 48 WLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999997653
No 18
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=28.89 E-value=50 Score=22.58 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhee
Q 033543 17 LLTLAGLAMVGYGIYL 32 (117)
Q Consensus 17 lf~l~G~~li~~giw~ 32 (117)
+||=+|++++++-+|-
T Consensus 21 ~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 21 VFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999999997
No 19
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=26.82 E-value=71 Score=19.27 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=14.1
Q ss_pred HHHHHHHH---HHHHHHHHHHhe
Q 033543 12 KLLNFLLT---LAGLAMVGYGIY 31 (117)
Q Consensus 12 ~~~N~lf~---l~G~~li~~giw 31 (117)
..+|++++ +.|+.++++|--
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigPA 24 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGPA 24 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788877 788777666643
No 20
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=26.74 E-value=98 Score=21.48 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHheeEEec
Q 033543 8 ECLLKLLNFLLTLAGLAMVGYGIYLFVEY 36 (117)
Q Consensus 8 k~~l~~~N~lf~l~G~~li~~giw~~~~~ 36 (117)
+|.+..+.++..++|+.+++-++-+....
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~ANRnr 64 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQANRNR 64 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence 68889999999999999999999875543
No 21
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=26.40 E-value=1.3e+02 Score=16.95 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 033543 82 YLFIGVGVVLFVISCVGCISATTRNG 107 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~es~ 107 (117)
++++.++.++..++...+.=|.|..+
T Consensus 4 ~~lip~sl~l~~~~l~~f~Wavk~GQ 29 (45)
T PF03597_consen 4 YILIPVSLILGLIALAAFLWAVKSGQ 29 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 67777777777777777777776554
No 22
>PF15125 TMEM238: TMEM238 protein family
Probab=25.18 E-value=1.7e+02 Score=17.95 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHheeEEe
Q 033543 12 KLLNFLLTLAGLAMVGYGIYLFVE 35 (117)
Q Consensus 12 ~~~N~lf~l~G~~li~~giw~~~~ 35 (117)
+.+.++|=++|..++..|+.+..+
T Consensus 7 f~laV~fD~vGl~~Ll~GiFa~l~ 30 (65)
T PF15125_consen 7 FWLAVVFDVVGLVMLLTGIFAPLD 30 (65)
T ss_pred hHHHHHHHHhhHHHHHHHHhcchh
Confidence 456778889999999999987763
No 23
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=24.99 E-value=3e+02 Score=20.70 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHheeEEecccccccCCcCCCCCCCcccccCcchhhhhhhhhcccccCchhhHHHHHHHHHH
Q 033543 10 LLKLLNFLLTLAGLAMVGYGIYLFVEYKRVDNLGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFIGVGV 89 (117)
Q Consensus 10 ~l~~~N~lf~l~G~~li~~giw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~ 89 (117)
+|.-.+-..|+.-+.+-....-.+.|.++-.+-.+ ++ ...+|.+|..|++++
T Consensus 23 iLlG~CaaiWLa~lG~~VaA~VaL~Dlgrg~~~~s-------------~s---------------s~T~WvLY~VI~VSa 74 (207)
T PF10812_consen 23 ILLGACAAIWLAALGVSVAATVALVDLGRGFHESS-------------GS---------------SGTPWVLYAVIGVSA 74 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeecccCCccCcC-------------CC---------------CCCCEeehHHHHHHH
Confidence 44555667788888888888888888765321111 00 123467788888888
Q ss_pred HHHHHHH
Q 033543 90 VLFVISC 96 (117)
Q Consensus 90 ~~~~v~~ 96 (117)
.++.-+.
T Consensus 75 aVIagAV 81 (207)
T PF10812_consen 75 AVIAGAV 81 (207)
T ss_pred HHHHHHH
Confidence 7765443
No 24
>PF15471 TMEM171: Transmembrane protein family 171
Probab=23.20 E-value=63 Score=25.57 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheeE
Q 033543 6 CLECLLKLLNFLLTLAGLAMVGYGIYLF 33 (117)
Q Consensus 6 ~lk~~l~~~N~lf~l~G~~li~~giw~~ 33 (117)
..+++ +|.++|+..|..+-.+|+|+-
T Consensus 108 FaQ~L--IFGFLFLTSGmLISvLGiWVP 133 (319)
T PF15471_consen 108 FAQFL--IFGFLFLTSGMLISVLGIWVP 133 (319)
T ss_pred hhHHH--HHHHHHHhhhhhhhhheeeec
Confidence 45555 668899999999999999984
No 25
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=22.78 E-value=82 Score=15.86 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHheeEEe
Q 033543 17 LLTLAGLAMVGYGIYLFVE 35 (117)
Q Consensus 17 lf~l~G~~li~~giw~~~~ 35 (117)
.+.+.|+++++.+.|....
T Consensus 12 ~~~~~G~~l~~~~~~~~~~ 30 (34)
T TIGR01167 12 LLLLLGLLLLGLGGLLLRK 30 (34)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 4456677777777766544
No 26
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=21.89 E-value=1.8e+02 Score=16.92 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 033543 82 YLFIGVGVVLFVISCVGCISATTRNG 107 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~es~ 107 (117)
+++|.++.++..++...+.=|.|..+
T Consensus 5 ~~LIpiSl~l~~~~l~~f~Wavk~GQ 30 (51)
T TIGR00847 5 TILIPISLLLGGVGLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 67788888877777777777776544
No 27
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=21.34 E-value=1.6e+02 Score=24.54 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 033543 2 ACRGCLECLLKLLNFLLTL 20 (117)
Q Consensus 2 ~c~~~lk~~l~~~N~lf~l 20 (117)
||...+||++++..++-.+
T Consensus 20 gC~YYlryfFlF~SLIQ~L 38 (442)
T PF06637_consen 20 GCWYYLRYFFLFVSLIQFL 38 (442)
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 6888999999999987764
No 28
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=21.30 E-value=1.8e+02 Score=17.41 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033543 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+..+++|++|+.
T Consensus 34 ~ia~~~~iG~~i~G~iGf~ 52 (61)
T PRK09400 34 LVAKVTGLGILLIGLIGFI 52 (61)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667778888889998875
No 29
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.87 E-value=1.5e+02 Score=22.19 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033543 81 IYLFIGVGVVLFVISCVGC 99 (117)
Q Consensus 81 ~~~li~~G~~~~~v~~~Gc 99 (117)
..+++.+|++.+++|.+|.
T Consensus 9 ~~vLLliG~~f~ligaIGL 27 (197)
T PRK12585 9 ISIMILIGGLLSILAAIGV 27 (197)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578888988888887764
No 30
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=20.71 E-value=1.5e+02 Score=15.65 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 033543 82 YLFIGVGVVLFVISCVGCISATTR 105 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~e 105 (117)
++-+.+|.+++++.+-|.....++
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 577889999999999998877653
No 31
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.28 E-value=1.6e+02 Score=17.70 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033543 82 YLFIGVGVVLFVISCVG 98 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~G 98 (117)
...++.|++..++|..+
T Consensus 42 ~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 42 IWYLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHHHhHHHHHHHHHhh
Confidence 36677788888887653
No 32
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=20.28 E-value=88 Score=22.68 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHheeEE
Q 033543 15 NFLLTLAGLAMVGYGIYLFV 34 (117)
Q Consensus 15 N~lf~l~G~~li~~giw~~~ 34 (117)
|++..+...++.++|+|+..
T Consensus 4 ~l~~~i~~gvL~~~G~Ylll 23 (163)
T PRK07946 4 NLGLLVAIGVLTSAGVYLLL 23 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444555555556666554
Done!