Query 033543
Match_columns 117
No_of_seqs 139 out of 1037
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 05:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rh5_B Preprotein translocase 18.1 1.5E+02 0.0051 17.7 3.5 19 82-100 36-54 (74)
2 2ww9_B Protein transport prote 16.7 1.7E+02 0.0057 17.8 3.5 20 81-100 48-67 (80)
3 2klu_A T-cell surface glycopro 13.4 1.9E+02 0.0066 17.1 3.0 18 83-100 10-27 (70)
4 3mp7_B Preprotein translocase 12.2 2.3E+02 0.008 16.1 3.5 19 82-100 32-50 (61)
5 2wwb_B SEC61gamma, protein tra 11.5 2E+02 0.0069 16.8 2.7 19 82-100 35-53 (68)
6 2ari_A Envelope polyprotein GP 8.9 1.4E+02 0.0047 15.7 1.1 16 88-103 4-19 (39)
7 1y29_A Huwentoxin-X; A double- 5.8 52 0.0018 16.0 -1.4 10 99-108 18-27 (28)
8 1v54_M VIIIB, IX, cytochrome C 5.7 4.1E+02 0.014 14.3 2.1 18 83-100 13-30 (46)
9 2pjv_A Envelope glycoprotein; 5.5 1E+02 0.0035 15.4 -0.4 13 89-101 4-16 (31)
10 2jp3_A FXYD domain-containing 5.2 5.7E+02 0.019 14.9 2.7 23 82-104 26-48 (67)
No 1
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=18.13 E-value=1.5e+02 Score=17.68 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033543 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+..+++|++|+.
T Consensus 36 ~iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 36 AVAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777778888998875
No 2
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=16.69 E-value=1.7e+02 Score=17.81 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033543 81 IYLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 81 ~~~li~~G~~~~~v~~~Gc~ 100 (117)
.-+.-++|+-.+++|++|+.
T Consensus 48 ~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 48 TKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677788888889999975
No 3
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=13.35 E-value=1.9e+02 Score=17.06 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033543 83 LFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 83 ~li~~G~~~~~v~~~Gc~ 100 (117)
++|++|...-++.+.|.|
T Consensus 10 ~LivlGg~~~lll~~glc 27 (70)
T 2klu_A 10 ALIVLGGVAGLLLFIGLG 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 336777776666666654
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=12.16 E-value=2.3e+02 Score=16.09 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033543 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+..+++|++|+.
T Consensus 32 ~iak~~~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 32 RAAKITGLGIILIGLIGML 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566677777788888865
No 5
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=11.53 E-value=2e+02 Score=16.79 Aligned_cols=19 Identities=5% Similarity=0.291 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033543 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-..++|++|+.
T Consensus 35 ~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 35 KIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677778888889999976
No 6
>2ari_A Envelope polyprotein GP160; HIV, fusion, peptide, domain, membrane, micelle, viral protein; NMR {Human immunodeficiency virus 1} PDB: 2jnr_B
Probab=8.90 E-value=1.4e+02 Score=15.72 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 033543 88 GVVLFVISCVGCISAT 103 (117)
Q Consensus 88 G~~~~~v~~~Gc~Ga~ 103 (117)
|...++++|+|..|+.
T Consensus 4 ~lg~~fLGfLgaaGst 19 (39)
T 2ari_A 4 GIGALFLGFLGAAGST 19 (39)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eeehHHhhhhhhhhcc
Confidence 3445677787777654
No 7
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=5.82 E-value=52 Score=16.02 Aligned_cols=10 Identities=30% Similarity=0.890 Sum_probs=5.3
Q ss_pred HHHhhccccc
Q 033543 99 CISATTRNGC 108 (117)
Q Consensus 99 c~Ga~~es~~ 108 (117)
|||...+|+|
T Consensus 18 CCG~Cs~nkC 27 (28)
T 1y29_A 18 CCGVCSHNKC 27 (28)
T ss_dssp BSSCBSSSCB
T ss_pred cccccccCcc
Confidence 4555555554
No 8
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=5.70 E-value=4.1e+02 Score=14.29 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033543 83 LFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 83 ~li~~G~~~~~v~~~Gc~ 100 (117)
.=-++|..++++++++=-
T Consensus 13 ~E~aigl~v~f~~~L~Pa 30 (46)
T 1v54_M 13 KEQAIGLSVTFLSFLLPA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 334557777778887643
No 9
>2pjv_A Envelope glycoprotein; HIV, GP41, fusion, peptide, domain, membrane, DPC, viral protein; NMR {Human immunodeficiency virus 1}
Probab=5.51 E-value=1e+02 Score=15.44 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 033543 89 VVLFVISCVGCIS 101 (117)
Q Consensus 89 ~~~~~v~~~Gc~G 101 (117)
.-.++++|+|.-|
T Consensus 4 lGa~FLGFLgaAG 16 (31)
T 2pjv_A 4 IGALFLGFLGAAG 16 (31)
T ss_dssp HHHHHHTHHHHTC
T ss_pred hhhHHHHHhhccc
Confidence 3445566666544
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=5.19 E-value=5.7e+02 Score=14.91 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 033543 82 YLFIGVGVVLFVISCVGCISATT 104 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~ 104 (117)
.++.++|+++++.+=+-|...-+
T Consensus 26 ~vLfi~GI~iilS~kcrCk~~qk 48 (67)
T 2jp3_A 26 GLLCIAGIALALSGKCKCRRNHT 48 (67)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCcccccCCCC
Confidence 46666777777666666665544
Done!