BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033544
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 73/93 (78%), Gaps = 2/93 (2%)
Query: 25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
+TCGQV+SSL CIPYV G GGAVPPACC+GI+++N+ A TTPDRQ+ CNCLK + S+
Sbjct: 2 ITCGQVSSSLAPCIPYVRG--GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASV 59
Query: 85 KNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
+N N A+ LP +CGV+IPY+IS S +C+ V+
Sbjct: 60 PGVNPNNAAALPGKCGVSIPYKISASTNCATVK 92
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
Query: 24 AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
A++CG VTS L C+ Y+TG G + P CC G+K L +AA TTPDRQ+ CNCLK+AAGS
Sbjct: 1 AISCGAVTSDLSPCLTYLTGGPGPS--PQCCGGVKKLLAAANTTPDRQAACNCLKSAAGS 58
Query: 84 IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
I LN N A+ LP +CGVNIPY+IS + +C+ V+
Sbjct: 59 ITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 92
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 7/96 (7%)
Query: 24 AVTCGQVTSSLQACIPYV--TGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAA 81
A+TCGQVTS+L C+ Y+ TGP G CC G+K+L ++A TT DRQ C CLK+AA
Sbjct: 1 AITCGQVTSNLAPCLAYLRNTGPLG-----RCCGGVKALVNSARTTEDRQIACTCLKSAA 55
Query: 82 GSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
G+I +NL A+ LP CGVNIPY+ISPS DCS+V+
Sbjct: 56 GAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
Query: 25 VTCGQVTSSLQACIPYVTGPRGGAVPPA-CCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
+TCGQV S++ C+ Y RGGA P A CCSG++SL +AA+TT DR++ CNCLK AA
Sbjct: 1 ITCGQVNSAVGPCLTYA---RGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARG 57
Query: 84 IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
IK LN A+ +P +CGV++PY IS S+DCSRV
Sbjct: 58 IKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 90
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 24 AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
A++CGQV S++ CI Y G +G CCSG++SLN+AA TT DR++ CNCLK AA
Sbjct: 1 AISCGQVASAIAPCISYARG-QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG 59
Query: 84 IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
+ LN A+ +P +CGV+IPY IS S DCSRV
Sbjct: 60 VSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 92
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
+TCGQV +L CI ++ +GG VPP+CC+G+K++ +++ TT DR++VC+CLK AAG++
Sbjct: 1 MTCGQVQGNLAQCIGFLQ--KGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAV 58
Query: 85 KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
+ +N N A LP +CGVNIPY+IS S +C+ +
Sbjct: 59 RGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
+ CGQV S ++ C+ YV G G CC+G++ L++ A ++ DRQ+VCNCLK A I
Sbjct: 1 LNCGQVDSKMKPCLTYVQG--GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGI 58
Query: 85 KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
NLNLN A+ +P +C VN+PY ISP +DCSR+
Sbjct: 59 HNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
+ CGQV S ++ C+ YV G G CC+G++ L++ A ++ DRQ+VCNCLK A I
Sbjct: 1 LNCGQVDSKMKPCLTYVQG--GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGI 58
Query: 85 KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
NLNLN A+ +P +C VN+PY ISP +DCSR+
Sbjct: 59 HNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
+ CG V S ++ C+ YV G G CC G+K+L++ A + DRQS CNCLK A I
Sbjct: 1 IDCGHVDSLVRPCLSYVQG--GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI 58
Query: 85 KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
NLN + A +P +CGVN+PY IS ++DCSRV
Sbjct: 59 HNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 26 TCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIK 85
CG V S ++ C+ YV G G CC G+K+L++ A + DRQS CNCLK A I
Sbjct: 2 DCGHVDSLVRPCLSYVQG--GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 86 NLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
NLN + A +P +CGVN+PY IS ++DCSRV
Sbjct: 60 NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|3KTC|A Chain A, Crystal Structure Of Putative Sugar Isomerase
(yp_050048.1) From Erwinia Carotovora Atroseptica
Scri1043 At 1.54 A Resolution
pdb|3KTC|B Chain B, Crystal Structure Of Putative Sugar Isomerase
(yp_050048.1) From Erwinia Carotovora Atroseptica
Scri1043 At 1.54 A Resolution
Length = 333
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPD---RQSVCNCLKTAA 81
VT +V +L+ G + + P ++ + A T PD R + +A
Sbjct: 61 VTLSEVKDALKDA-----GLKAIGITPEIY--LQKWSRGAFTNPDPAARAAAFELXHESA 113
Query: 82 GSIKNLNLNLASRLPRQCGVNIPYQIS 108
G ++ L N P Q G + P+Q+S
Sbjct: 114 GIVRELGANYVKVWPGQDGWDYPFQVS 140
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 14 MVMGAPIAQAAVTCGQVTSSLQACIPYVTG---PRGGAVPPACCSGIKSLNSAATTTPDR 70
+V+GAP +T T L C Y TG P G VPP + L+ A+TT+P +
Sbjct: 30 VVVGAP---QKITAANQTGGLYQC-GYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQ 85
Query: 71 QSVC 74
C
Sbjct: 86 LLAC 89
>pdb|2FUK|A Chain A, Crystal Structure Of Xc6422 From Xanthomonas Campestris: A
Member Of AB SERINE HYDROLASE WITHOUT LID AT 1.6
Resolution
Length = 220
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 73 VCNCLKTAAGSIKNLNLNLASRLPRQCGVNI 103
VC+ L T GS+ N + +A+R R+ G+ +
Sbjct: 42 VCHPLSTEGGSMHNKVVTMAARALRELGITV 72
>pdb|1OQV|A Chain A, Structure Of Tcpa, The Type Iv Pilin Subunit From The
Toxin Co- Regulated Pilus Of Vibrio Cholerae Classical
Biotype
pdb|1OQV|B Chain B, Structure Of Tcpa, The Type Iv Pilin Subunit From The
Toxin Co- Regulated Pilus Of Vibrio Cholerae Classical
Biotype
pdb|1OQV|C Chain C, Structure Of Tcpa, The Type Iv Pilin Subunit From The
Toxin Co- Regulated Pilus Of Vibrio Cholerae Classical
Biotype
Length = 192
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 27 CGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKN 86
C + +S+ PY+ GGAV A + NSAA ++ +K+ A + KN
Sbjct: 113 CKTLITSVGDMFPYIAIKAGGAVALADLGDFE--NSAAAA----ETGVGVIKSIAPASKN 166
Query: 87 LNLNLASRLPRQCGVNIPYQIS 108
L+L + + + C P+ ++
Sbjct: 167 LDLTNITHVEKLCKGTAPFGVA 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.131 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,870,560
Number of Sequences: 62578
Number of extensions: 84341
Number of successful extensions: 163
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 18
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)