Query 033544
Match_columns 117
No_of_seqs 101 out of 923
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 3.5E-27 7.6E-32 152.9 4.3 89 25-114 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 1.6E-15 3.4E-20 95.1 2.6 69 27-105 1-70 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 3.4E-15 7.4E-20 90.5 2.5 62 34-101 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.5 2.2E-15 4.8E-20 97.7 -0.7 71 24-105 19-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.4 6.2E-14 1.3E-18 86.4 2.5 61 32-104 4-64 (66)
6 PF00234 Tryp_alpha_amyl: Prot 99.0 3.6E-12 7.7E-17 82.0 -4.6 68 32-113 13-90 (90)
7 smart00499 AAI Plant lipid tra 99.0 2.1E-10 4.7E-15 70.7 3.6 72 27-105 1-76 (79)
8 PF14547 Hydrophob_seed: Hydro 93.4 0.044 9.5E-07 35.3 1.4 79 27-113 2-84 (85)
9 cd01958 HPS_like HPS_like: Hyd 92.1 0.11 2.5E-06 33.3 2.0 73 27-104 4-80 (85)
10 PF05617 Prolamin_like: Prolam 19.1 52 0.0011 19.4 0.6 24 38-62 17-41 (70)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.93 E-value=3.5e-27 Score=152.89 Aligned_cols=89 Identities=62% Similarity=1.084 Sum_probs=82.5
Q ss_pred cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544 25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP 104 (117)
Q Consensus 25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p 104 (117)
.+|.++...|.||++|+++. ..+|+++||++++++++.+++..|++++|+|+++...++++||.+++++||++||+++|
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~-~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~ 79 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGG-GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIP 79 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCC-CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCC
Confidence 36898989999999999985 46899999999999999999999999999999998888756999999999999999999
Q ss_pred CCCCCCCCCC
Q 033544 105 YQISPSVDCS 114 (117)
Q Consensus 105 ~~i~~~~dC~ 114 (117)
|+|+++|||+
T Consensus 80 ~~i~~~~dC~ 89 (89)
T cd01960 80 YPISPSTDCS 89 (89)
T ss_pred CCCCCCCCCC
Confidence 9999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.56 E-value=1.6e-15 Score=95.06 Aligned_cols=69 Identities=28% Similarity=0.644 Sum_probs=54.0
Q ss_pred chhhccCccCChhhhcCCC-CCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCCC
Q 033544 27 CGQVTSSLQACIPYVTGPR-GGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPY 105 (117)
Q Consensus 27 C~~~~~~l~pC~~yv~~~~-~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p~ 105 (117)
|+..+..|.||++|++++. ..+||..||+++|++ +++|+|..++.. .++.||.+++.+||++||+++|.
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~C~C~~~~~~--~~~~i~~~~a~~Lp~~Cgv~~p~ 70 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLPCLCRYKTSL--VLQIIDPDKAVYLPAKCGLPLPP 70 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcCCEeeccCCC--cccccCHHHHHHHHHHcCCCCCC
Confidence 5554578999999999752 136899999999984 667777777643 33359999999999999999883
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.53 E-value=3.4e-15 Score=90.46 Aligned_cols=62 Identities=39% Similarity=0.786 Sum_probs=52.9
Q ss_pred ccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCC-CHHHHhhhhhhcCC
Q 033544 34 LQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNL-NLNLASRLPRQCGV 101 (117)
Q Consensus 34 l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~i-n~~~a~~Lp~~Cgv 101 (117)
|.||++|+++. ..+||++||++++++++ .+++|+|+++++......++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~-~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGG-ATAPPSDCCSGLKSVVK-----SDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCC-CCCCChHHHHHHHHHHh-----cChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 57999999985 46899999999999976 37889999999876654345 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.49 E-value=2.2e-15 Score=97.68 Aligned_cols=71 Identities=38% Similarity=0.764 Sum_probs=48.6
Q ss_pred ccCchhhccCccCC---hhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccc-cccCCCCHHHHhhhhhhc
Q 033544 24 AVTCGQVTSSLQAC---IPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAA-GSIKNLNLNLASRLPRQC 99 (117)
Q Consensus 24 ~~~C~~~~~~l~pC---~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~-~~~~~in~~~a~~Lp~~C 99 (117)
..+|.+ .|.|| ..|+.+ ..+||++||+++|++.+ .|..|+|+++++.. ..+ +||.+++.+||++|
T Consensus 19 ~~~c~~---~l~~c~~~~~~~~~--~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~C 87 (96)
T PF14368_consen 19 CCSCAN---SLLPCCPCLCYVTG--GPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAAC 87 (96)
T ss_dssp TTB-HC---CCCHH--HHHHHCC-------HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHC
T ss_pred cchhHH---HHhccccchhccCC--CCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHc
Confidence 345643 46666 788875 67899999999999854 47899999999876 444 89999999999999
Q ss_pred CCCCCC
Q 033544 100 GVNIPY 105 (117)
Q Consensus 100 gv~~p~ 105 (117)
|++.|.
T Consensus 88 g~~~~~ 93 (96)
T PF14368_consen 88 GVPVPP 93 (96)
T ss_dssp TSS-S-
T ss_pred CCCCCC
Confidence 999884
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.43 E-value=6.2e-14 Score=86.43 Aligned_cols=61 Identities=28% Similarity=0.630 Sum_probs=52.0
Q ss_pred cCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544 32 SSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP 104 (117)
Q Consensus 32 ~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p 104 (117)
..|.+|++|+++ +.+||++||+.+|+ +.+|+|+++++..... .||.++|.+||++||+++|
T Consensus 4 ~~L~~C~~ai~~--~~~Ps~~CC~~Lk~---------~~~CLC~y~~~p~l~~-~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILG--GSPPSAACCAKLKE---------QQSCLCQYAKNPSLKQ-YVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhC--CCCCCHHHHHHHhc---------CCCCeeeeecCccHHh-hcCcHHHHHHHHHcCCCCC
Confidence 379999999997 56899999999998 3389999998854332 4899999999999999986
No 6
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=99.04 E-value=3.6e-12 Score=81.97 Aligned_cols=68 Identities=29% Similarity=0.721 Sum_probs=56.0
Q ss_pred cCccCChhhhcCCCCCccccccccchhhhhhhccCCcCccccccccccccccc----------CCCCHHHHhhhhhhcCC
Q 033544 32 SSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI----------KNLNLNLASRLPRQCGV 101 (117)
Q Consensus 32 ~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~----------~~in~~~a~~Lp~~Cgv 101 (117)
..+.+|..|+++. ...|+..||++++++ +++|.|..++...... .+++..+|.+||+.||+
T Consensus 13 ~~l~~c~~~~~~~-~~~~~~~CC~~L~~l--------~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v 83 (90)
T PF00234_consen 13 VRLSPCLPYLQGG-CQQPSQQCCQQLRQL--------DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNV 83 (90)
T ss_dssp SHHHGGHHHHTTS-SSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTS
T ss_pred ccccccHHHHhcc-cccchHHHhHHHHHH--------hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCC
Confidence 4589999999984 457999999999998 5689999998765441 25889999999999999
Q ss_pred CCCCCCCCCCCC
Q 033544 102 NIPYQISPSVDC 113 (117)
Q Consensus 102 ~~p~~i~~~~dC 113 (117)
++|+ +||
T Consensus 84 ~~~~-----~~C 90 (90)
T PF00234_consen 84 SPPY-----TDC 90 (90)
T ss_dssp SSSS-----S-G
T ss_pred CCCC-----CCC
Confidence 9997 666
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.04 E-value=2.1e-10 Score=70.66 Aligned_cols=72 Identities=40% Similarity=0.780 Sum_probs=55.3
Q ss_pred chhhccCccCChhhhcCCC-CCccccccccchhhhhhhccCCcCcccccccccccccccCC---CCHHHHhhhhhhcCCC
Q 033544 27 CGQVTSSLQACIPYVTGPR-GGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKN---LNLNLASRLPRQCGVN 102 (117)
Q Consensus 27 C~~~~~~l~pC~~yv~~~~-~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~---in~~~a~~Lp~~Cgv~ 102 (117)
|......+.+|.+|+++.. ...|+.+||++++.+. +..|+|..++........ ++.+++.+||+.||+.
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~-------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~ 73 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN-------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVP 73 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc-------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCC
Confidence 5555566779999999742 3578899999999974 446888877765444322 5899999999999999
Q ss_pred CCC
Q 033544 103 IPY 105 (117)
Q Consensus 103 ~p~ 105 (117)
.++
T Consensus 74 ~~~ 76 (79)
T smart00499 74 PPY 76 (79)
T ss_pred CCC
Confidence 875
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=93.44 E-value=0.044 Score=35.26 Aligned_cols=79 Identities=23% Similarity=0.454 Sum_probs=48.5
Q ss_pred chhhccCccCChhhhcC---CCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHH-HHhhhhhhcCCC
Q 033544 27 CGQVTSSLQACIPYVTG---PRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLN-LASRLPRQCGVN 102 (117)
Q Consensus 27 C~~~~~~l~pC~~yv~~---~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~-~a~~Lp~~Cgv~ 102 (117)
|.....+|.-|.+.+.. .-+.++..+||.-++.+.+. .-..|+|.-+|.....+-++|.+ ....|-..||..
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~----~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~ 77 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL----DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKT 77 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc----hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCc
Confidence 43333467778887711 11235788999999998642 11247777777654442133333 456777889999
Q ss_pred CCCCCCCCCCC
Q 033544 103 IPYQISPSVDC 113 (117)
Q Consensus 103 ~p~~i~~~~dC 113 (117)
.| .+++|
T Consensus 78 ~p----~gf~C 84 (85)
T PF14547_consen 78 VP----SGFTC 84 (85)
T ss_pred Cc----CCCcC
Confidence 88 66666
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=92.14 E-value=0.11 Score=33.34 Aligned_cols=73 Identities=25% Similarity=0.455 Sum_probs=43.8
Q ss_pred chhhccCccCChhhhcCC---CCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHH-HHhhhhhhcCCC
Q 033544 27 CGQVTSSLQACIPYVTGP---RGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLN-LASRLPRQCGVN 102 (117)
Q Consensus 27 C~~~~~~l~pC~~yv~~~---~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~-~a~~Lp~~Cgv~ 102 (117)
|.....++.-|.+-+... .+.+|..+||.-++++.+. .-..|+|.-+|.....+ ++|.+ +..-|-..||..
T Consensus 4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl----dAA~CLCtaikan~lgi-~~~~pv~l~llln~CGk~ 78 (85)
T cd01958 4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL----DAAVCLCTAIKANILGI-SINIPVALSLLLNSCGRN 78 (85)
T ss_pred CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh----heeeeeeeeeeccccCc-ccccChhHHHHHHHHcCc
Confidence 443334566677765321 1236778999999998653 12347777777544333 34433 334555679999
Q ss_pred CC
Q 033544 103 IP 104 (117)
Q Consensus 103 ~p 104 (117)
.|
T Consensus 79 ~P 80 (85)
T cd01958 79 VP 80 (85)
T ss_pred CC
Confidence 88
No 10
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=19.06 E-value=52 Score=19.44 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=0.0
Q ss_pred hhhhc-CCCCCccccccccchhhhhh
Q 033544 38 IPYVT-GPRGGAVPPACCSGIKSLNS 62 (117)
Q Consensus 38 ~~yv~-~~~~~~Ps~~CC~~vk~l~~ 62 (117)
..++. +. ....+++||.++..+.+
T Consensus 17 ~~~~~~g~-~~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 17 FNSFFNGN-KKNIGPECCKAINKMGK 41 (70)
T ss_pred HHHHHcCC-CCCCChHHHHHHHHHhH
Done!