Query 033547
Match_columns 117
No_of_seqs 169 out of 816
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.9 1.2E-23 4.1E-28 136.9 4.4 60 10-70 3-62 (63)
2 4gat_A Nitrogen regulatory pro 99.9 1.9E-22 6.7E-27 132.2 3.2 57 12-69 7-63 (66)
3 2vut_I AREA, nitrogen regulato 99.8 1.1E-20 3.7E-25 114.7 3.8 43 14-57 1-43 (43)
4 4hc9_A Trans-acting T-cell-spe 99.8 3.6E-20 1.2E-24 132.2 4.6 60 10-70 55-114 (115)
5 2kae_A GATA-type transcription 99.8 1.9E-20 6.4E-25 124.3 2.3 55 10-64 4-58 (71)
6 1gnf_A Transcription factor GA 99.8 1.2E-19 4E-24 111.6 4.6 43 13-56 3-45 (46)
7 4hc9_A Trans-acting T-cell-spe 99.6 1.1E-15 3.7E-20 109.0 5.2 45 12-57 3-47 (115)
8 2crr_A Stromal membrane-associ 83.0 0.97 3.3E-05 32.5 3.2 45 13-59 28-76 (141)
9 2owa_A Arfgap-like finger doma 82.7 0.71 2.4E-05 33.2 2.5 45 13-59 35-83 (138)
10 3dwd_A ADP-ribosylation factor 82.1 1.2 4.2E-05 32.5 3.5 46 12-59 36-85 (147)
11 1dl6_A Transcription factor II 82.1 0.64 2.2E-05 28.6 1.7 30 14-46 11-40 (58)
12 3cw2_K Translation initiation 81.9 0.58 2E-05 33.8 1.7 29 15-44 104-132 (139)
13 2iqj_A Stromal membrane-associ 81.9 0.86 2.9E-05 32.5 2.6 45 13-59 26-74 (134)
14 2crw_A ARF GAP 3, ADP-ribosyla 79.2 1.8 6.1E-05 31.5 3.6 45 13-59 28-76 (149)
15 2d74_B Translation initiation 78.6 0.66 2.2E-05 33.9 1.1 29 15-44 105-133 (148)
16 1k81_A EIF-2-beta, probable tr 78.0 0.17 5.9E-06 28.6 -1.7 28 16-44 2-29 (36)
17 1nee_A EIF-2-beta, probable tr 76.3 0.62 2.1E-05 33.6 0.4 29 15-44 103-131 (138)
18 2p57_A GTPase-activating prote 72.6 1.5 5.1E-05 31.9 1.6 45 13-59 36-84 (144)
19 2olm_A Nucleoporin-like protei 71.3 1.9 6.6E-05 30.9 2.0 45 13-59 24-71 (140)
20 2b0o_E UPLC1; arfgap, structur 70.9 3.1 0.00011 31.6 3.2 44 13-58 41-88 (301)
21 3sub_A ADP-ribosylation factor 69.8 3.4 0.00012 30.6 3.1 44 13-58 21-68 (163)
22 3k7a_M Transcription initiatio 69.8 1.3 4.5E-05 35.2 0.9 33 13-46 20-52 (345)
23 1pft_A TFIIB, PFTFIIBN; N-term 67.3 0.98 3.4E-05 26.4 -0.3 31 13-46 4-34 (50)
24 3o47_A ADP-ribosylation factor 63.2 5.1 0.00017 31.1 3.0 45 13-59 36-84 (329)
25 2g2k_A EIF-5, eukaryotic trans 58.6 1.2 4.3E-05 33.1 -1.2 29 15-44 97-127 (170)
26 3jue_A Arfgap with coiled-coil 56.9 8.3 0.00028 30.6 3.3 36 13-50 44-79 (368)
27 2e9h_A EIF-5, eukaryotic trans 53.0 1.9 6.3E-05 31.8 -1.0 29 15-44 104-134 (157)
28 4bbr_M Transcription initiatio 50.5 2.3 7.7E-05 34.1 -1.0 30 14-44 21-50 (345)
29 3lju_X ARF-GAP with dual PH do 50.5 4.6 0.00016 32.6 0.9 45 13-59 33-80 (386)
30 3cng_A Nudix hydrolase; struct 49.4 4 0.00014 28.8 0.3 32 13-44 2-33 (189)
31 3bvo_A CO-chaperone protein HS 47.8 6.7 0.00023 29.4 1.3 54 13-71 9-71 (207)
32 1dcq_A PYK2-associated protein 44.8 15 0.0005 27.3 2.8 46 13-60 16-65 (278)
33 3k1f_M Transcription initiatio 42.2 4.2 0.00014 31.0 -0.6 31 13-44 20-50 (197)
34 3lvq_E ARF-GAP with SH3 domain 40.0 13 0.00045 29.9 2.0 34 13-48 22-55 (497)
35 1lko_A Rubrerythrin all-iron(I 37.6 3.8 0.00013 30.1 -1.4 25 14-44 155-179 (191)
36 2yrk_A Zinc finger homeobox pr 36.4 4.3 0.00015 25.2 -1.1 20 30-49 7-26 (55)
37 3pwf_A Rubrerythrin; non heme 34.4 7.1 0.00024 28.4 -0.4 26 12-44 136-161 (170)
38 3lpe_B DNA-directed RNA polyme 32.5 9.2 0.00032 23.7 -0.0 15 16-30 15-29 (59)
39 2yrc_A Protein transport prote 32.5 12 0.00041 23.0 0.5 38 7-44 2-41 (59)
40 2zjr_Z 50S ribosomal protein L 29.4 5.9 0.0002 24.6 -1.3 24 13-45 29-52 (60)
41 1ovx_A ATP-dependent CLP prote 29.3 21 0.00072 22.7 1.3 33 14-48 18-52 (67)
42 2ds5_A CLPX, ATP-dependent CLP 29.0 23 0.00078 21.2 1.3 30 14-45 11-42 (51)
43 1nui_A DNA primase/helicase; z 28.1 14 0.00048 27.5 0.3 29 13-44 13-41 (255)
44 2k1p_A Zinc finger RAN-binding 26.9 22 0.00075 19.2 0.9 24 12-43 4-27 (33)
45 4hn5_A Glucocorticoid receptor 26.7 27 0.00094 24.1 1.6 35 10-49 25-59 (117)
46 3v2d_5 50S ribosomal protein L 26.6 6 0.00021 24.5 -1.7 24 13-45 29-52 (60)
47 3h0g_L DNA-directed RNA polyme 26.4 18 0.00063 22.6 0.6 33 12-49 19-51 (63)
48 1twf_L ABC10-alpha, DNA-direct 26.2 16 0.00055 23.2 0.3 29 11-44 25-53 (70)
49 2csy_A Zinc finger protein 183 26.1 1.1E+02 0.0037 18.2 4.9 44 10-56 11-55 (81)
50 1pqv_S STP-alpha, transcriptio 25.8 14 0.00048 29.2 -0.1 35 14-48 268-308 (309)
51 2c6a_A Ubiquitin-protein ligas 23.8 29 0.00098 20.7 1.0 18 10-27 9-26 (46)
52 2l1q_A Liver-expressed antimic 23.7 21 0.00073 20.7 0.5 8 25-32 2-9 (40)
53 2kdx_A HYPA, hydrogenase/ureas 23.5 15 0.00052 24.7 -0.2 27 13-45 72-99 (119)
54 2ect_A Ring finger protein 126 23.3 1.1E+02 0.0037 18.0 3.8 47 8-55 9-57 (78)
55 1wig_A KIAA1808 protein; LIM d 23.2 24 0.00081 21.3 0.6 19 36-54 53-71 (73)
56 2han_A Protein ultraspiracle; 23.1 39 0.0013 22.3 1.7 34 11-49 7-40 (93)
57 1qyp_A RNA polymerase II; tran 21.8 14 0.00047 21.9 -0.6 33 14-46 15-53 (57)
58 3mhs_E SAGA-associated factor 21.0 15 0.00052 25.0 -0.7 8 37-44 76-83 (96)
59 2lcq_A Putative toxin VAPC6; P 20.3 19 0.00063 25.3 -0.4 27 13-45 131-157 (165)
60 1n0z_A ZNF265; zinc finger, RN 20.3 52 0.0018 18.9 1.7 27 10-44 10-38 (45)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.88 E-value=1.2e-23 Score=136.92 Aligned_cols=60 Identities=38% Similarity=0.678 Sum_probs=52.6
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcccccCCCCcchhhhhhhccc
Q 033547 10 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS 70 (117)
Q Consensus 10 ~~~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~~rp~~~~~~~~~~r~rk~~ 70 (117)
.......|++|+|++||+||+||+|+ +|||||||||+++++.||+.+++++|++|+||.+
T Consensus 3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~~ 62 (63)
T 3dfx_A 3 ARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 62 (63)
T ss_dssp CCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred CCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCCC
Confidence 34567889999999999999999996 9999999999999999999999999999999864
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.85 E-value=1.9e-22 Score=132.18 Aligned_cols=57 Identities=35% Similarity=0.710 Sum_probs=53.1
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcccccCCCCcchhhhhhhcc
Q 033547 12 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKY 69 (117)
Q Consensus 12 ~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~~rp~~~~~~~~~~r~rk~ 69 (117)
.....|++|+|++||+||+||+|+ +|||||||||+++++.||+.++++.|++|+|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~ 63 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS 63 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence 467999999999999999999995 999999999999999999999999999887764
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.81 E-value=1.1e-20 Score=114.71 Aligned_cols=43 Identities=40% Similarity=0.870 Sum_probs=39.8
Q ss_pred CcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcccccCCC
Q 033547 14 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR 57 (117)
Q Consensus 14 ~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~~rp~~~ 57 (117)
+..|++|++++||+||+||+|+ +|||||||||+++++.||+.|
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence 3679999999999999999996 999999999999999999875
No 4
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.79 E-value=3.6e-20 Score=132.19 Aligned_cols=60 Identities=38% Similarity=0.680 Sum_probs=53.0
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcccccCCCCcchhhhhhhccc
Q 033547 10 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS 70 (117)
Q Consensus 10 ~~~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~~rp~~~~~~~~~~r~rk~~ 70 (117)
.......|+||+|++||+||+||+| .+|||||||||++|++.||+.++++.|++|+||.+
T Consensus 55 ~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~s 114 (115)
T 4hc9_A 55 ARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 114 (115)
T ss_dssp CCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred cccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccccc
Confidence 3456789999999999999999999 89999999999999999999999999999999874
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.79 E-value=1.9e-20 Score=124.32 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=44.2
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcccccCCCCcchhhh
Q 033547 10 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQK 64 (117)
Q Consensus 10 ~~~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~~rp~~~~~~~~~~ 64 (117)
..+....|+||+|++||+||+++.+..+|||||||||+++++.||+.+....+.+
T Consensus 4 ~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~~~~ 58 (71)
T 2kae_A 4 MNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKR 58 (71)
T ss_dssp ----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHHHHH
T ss_pred CCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhhhhh
Confidence 3456789999999999999996444348999999999999999999999875443
No 6
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.78 E-value=1.2e-19 Score=111.55 Aligned_cols=43 Identities=37% Similarity=0.774 Sum_probs=40.1
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcccccCC
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLG 56 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~~rp~~ 56 (117)
....|++|++++||+||+||+|+ +|||||||||+++++.||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCC
Confidence 46789999999999999999995 99999999999999999974
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.59 E-value=1.1e-15 Score=108.99 Aligned_cols=45 Identities=38% Similarity=0.824 Sum_probs=39.7
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcccccCCC
Q 033547 12 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR 57 (117)
Q Consensus 12 ~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~~rp~~~ 57 (117)
...+.|+||+|++||+||++++| ++|||||||||+.+++.+|+..
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~K 47 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIK 47 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSS
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccccccccc
Confidence 35789999999999999999999 7999999999999999999743
No 8
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.98 E-value=0.97 Score=32.50 Aligned_cols=45 Identities=27% Similarity=0.516 Sum_probs=33.8
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhc----ccccCCCCc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK 59 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~----~~rp~~~~~ 59 (117)
....|++|+.. -|.|-.-..| ..+|-.|.--.+..+ +-+.+.|+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~ 76 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ 76 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSC
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCC
Confidence 45789999986 5999999999 789999976666654 445555544
No 9
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=82.73 E-value=0.71 Score=33.20 Aligned_cols=45 Identities=27% Similarity=0.524 Sum_probs=33.8
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcc----cccCCCCc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 59 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~----~rp~~~~~ 59 (117)
....|++|+... |.|-.-..| -.+|-.|.=..|..+. -+.+.|+.
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~ 83 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDK 83 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSC
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCc
Confidence 467899999864 999999999 7899999776666543 34455543
No 10
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=82.11 E-value=1.2 Score=32.53 Aligned_cols=46 Identities=26% Similarity=0.502 Sum_probs=34.0
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcc----cccCCCCc
Q 033547 12 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 59 (117)
Q Consensus 12 ~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~----~rp~~~~~ 59 (117)
.....|++|+... |.|-.-..| -.+|-.|.-..|..+. -+.+.|+.
T Consensus 36 p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD~ 85 (147)
T 3dwd_A 36 DENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDK 85 (147)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC--
T ss_pred cCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCccccccccC
Confidence 3567899999864 999999999 7999999776666543 35555544
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=82.06 E-value=0.64 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=21.8
Q ss_pred CcccccCCCCCCCccccCCCCCCccchHHHHHH
Q 033547 14 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRY 46 (117)
Q Consensus 14 ~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~ 46 (117)
...|.+|+.+. +-.....| ..+|..||+-+
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEE
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEE
Confidence 44799998755 44445566 68999999844
No 12
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=81.91 E-value=0.58 Score=33.75 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=21.7
Q ss_pred cccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 15 KSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 15 ~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
..|..|+.++|-+=+.+..- ..-|+|||-
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 132 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGA 132 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC---
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCC
Confidence 57999999999998876544 568999996
No 13
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=81.91 E-value=0.86 Score=32.52 Aligned_cols=45 Identities=27% Similarity=0.523 Sum_probs=34.2
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhc----ccccCCCCc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK 59 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~----~~rp~~~~~ 59 (117)
....|++|+... |.|-.-..| ..+|-.|.=-.+..+ +-+.+.|+.
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~hiS~VkSl~ld~ 74 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ 74 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCCCCceeeccccC
Confidence 468899999874 999999999 789999976666654 345555543
No 14
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.23 E-value=1.8 Score=31.53 Aligned_cols=45 Identities=29% Similarity=0.499 Sum_probs=34.8
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcc----cccCCCCc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 59 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~----~rp~~~~~ 59 (117)
....|++|+.. -|.|-.-..| ..+|-.|.=..|..++ -+.+.|+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~LD~ 76 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTELDS 76 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSSCC
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccccCC
Confidence 56889999975 6999999999 7899999766666543 45666653
No 15
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=78.56 E-value=0.66 Score=33.86 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=23.6
Q ss_pred cccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 15 KSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 15 ~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
..|..|+.++|-+=+.+..- -.-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCC
Confidence 46999999999998866544 568999985
No 16
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=78.02 E-value=0.17 Score=28.59 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=21.4
Q ss_pred ccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 16 SCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 16 ~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
.|..|+.++|-+=+.+..- ..-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 5999999999998754333 346999984
No 17
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=76.34 E-value=0.62 Score=33.58 Aligned_cols=29 Identities=31% Similarity=0.670 Sum_probs=23.4
Q ss_pred cccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 15 KSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 15 ~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
..|..|+.++|-+=+.+..- -.-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 36999999999998865444 568999984
No 18
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=72.56 E-value=1.5 Score=31.86 Aligned_cols=45 Identities=29% Similarity=0.490 Sum_probs=34.5
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhc----ccccCCCCc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK 59 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~----~~rp~~~~~ 59 (117)
....|.+|+.. -|.|-.-..| ..+|-.|.-..+..+ +-+.+.|+.
T Consensus 36 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~LD~ 84 (144)
T 2p57_A 36 TNKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTELDS 84 (144)
T ss_dssp GGGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSCC
T ss_pred CCCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecccCC
Confidence 56889999976 5999999999 789999977666654 345566653
No 19
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=71.35 E-value=1.9 Score=30.87 Aligned_cols=45 Identities=20% Similarity=0.525 Sum_probs=33.2
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHh---cccccCCCCc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKT---KKLALLGRDK 59 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~---~~~rp~~~~~ 59 (117)
....|++|+.. -|.|-.-..| -.+|-.|.=-.+.. .+-+.+.|+.
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~~s~VrSl~ld~ 71 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNPPHRVKSISMTT 71 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSSCCCEEETTTCC
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCCcceeeecCCCC
Confidence 46789999985 6999999999 78999996655543 3445555543
No 20
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=70.92 E-value=3.1 Score=31.56 Aligned_cols=44 Identities=27% Similarity=0.510 Sum_probs=32.9
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhc----ccccCCCC
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRD 58 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~----~~rp~~~~ 58 (117)
....|.+|+... |.|-.-.-| ..+|-.|---.+..+ +-+.+.++
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~~is~v~sl~lD 88 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGVRFSRMQSLTLD 88 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTS
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCCCcccccccCcC
Confidence 578899999965 999999999 799999955455443 33455555
No 21
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=69.81 E-value=3.4 Score=30.65 Aligned_cols=44 Identities=27% Similarity=0.491 Sum_probs=33.1
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcc----cccCCCC
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRD 58 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~----~rp~~~~ 58 (117)
....|++|+.. -|.|-.-..| -.+|-.|.-..|..+. -+.+.|+
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~LG~hISkVKSltLD 68 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSLGVHISIVRSIKMD 68 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHTCTTTCCEEETTTC
T ss_pred CCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCCCCCCCeeeecccc
Confidence 46789999986 6999999999 7999999765665543 3444444
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=69.81 E-value=1.3 Score=35.23 Aligned_cols=33 Identities=18% Similarity=0.515 Sum_probs=22.6
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRY 46 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~ 46 (117)
....|.+|+.+.+.+-.+-..| ..+|..||+-.
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCC-CEecCCCCeEc
Confidence 3567999998743233344567 78999999844
No 23
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=67.25 E-value=0.98 Score=26.35 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=20.5
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRY 46 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~ 46 (117)
....|.+|+.+ ++-.....| ..+|..||+-|
T Consensus 4 ~~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred ccEeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 34579999773 343333445 68999999844
No 24
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=63.21 E-value=5.1 Score=31.08 Aligned_cols=45 Identities=27% Similarity=0.494 Sum_probs=33.6
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhcc----cccCCCCc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 59 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~~----~rp~~~~~ 59 (117)
....|++|+.. -|.|-.-..| -.+|-.|.--.|..+. -+.+.|+.
T Consensus 36 ~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~~~~~s~v~s~~~~~ 84 (329)
T 3o47_A 36 ENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDK 84 (329)
T ss_dssp TTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSCC
T ss_pred CCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhcccCCCcCEEeeccccC
Confidence 56789999985 6799999999 7999999766666543 34555444
No 25
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=58.65 E-value=1.2 Score=33.13 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=22.2
Q ss_pred cccccCCCCCCCccc--cCCCCCCccchHHHH
Q 033547 15 KSCIDCHTTRTPLWR--GGPAGPRSLCNACGI 44 (117)
Q Consensus 15 ~~C~~C~tt~Tp~WR--~gp~G~~~lCNaCGl 44 (117)
..|..|+.++|-+-+ .+..- ..-|+|||-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~-~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTI-GNSCKACGY 127 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEE-EEEETTTCC
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccccCC
Confidence 369999999999988 33333 358999985
No 26
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=56.91 E-value=8.3 Score=30.55 Aligned_cols=36 Identities=31% Similarity=0.592 Sum_probs=29.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK 50 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~ 50 (117)
....|++|+.. -|.|-.-..| ..+|-.|.=-.+..+
T Consensus 44 ~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~lg 79 (368)
T 3jue_A 44 GNAQCCDCREP-APEWASINLG-VTLCIQCSGIHRSLG 79 (368)
T ss_dssp TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhccC
Confidence 56789999985 6999999999 799999965555543
No 27
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.01 E-value=1.9 Score=31.78 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=22.0
Q ss_pred cccccCCCCCCCccc--cCCCCCCccchHHHH
Q 033547 15 KSCIDCHTTRTPLWR--GGPAGPRSLCNACGI 44 (117)
Q Consensus 15 ~~C~~C~tt~Tp~WR--~gp~G~~~lCNaCGl 44 (117)
..|..|+..+|-+-+ .+..- ..-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~-~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTI-GNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEE-EEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccCCCC
Confidence 469999999999986 33322 357999995
No 28
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=50.53 E-value=2.3 Score=34.14 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=18.7
Q ss_pred CcccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 14 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 14 ~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
...|.+|+...+-+--+-..| .++|..||+
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGl 50 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCC
Confidence 346888887433333334556 688888876
No 29
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=50.52 E-value=4.6 Score=32.61 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=32.6
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHh---cccccCCCCc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKT---KKLALLGRDK 59 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~---~~~rp~~~~~ 59 (117)
....|++|++. -|.|-.-..| -.+|-.|.--.+.. .+-+.+.|+.
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr~l~his~v~s~~ld~ 80 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLG-VFICLSCSGIHRNIPQVSKVKSVRLDA 80 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHTCTTTCCEEETTTSC
T ss_pred CCCcCccCCCC-CCCeEEeccc-EEEhhhhchHhhCCCccceeeeecccC
Confidence 35679999986 7999999999 79999996544442 2345555543
No 30
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=49.37 E-value=4 Score=28.80 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=25.2
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
..+.|..||+..+...-.|..+....|-.||.
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCC
Confidence 35789999999988766676666679999993
No 31
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=47.82 E-value=6.7 Score=29.36 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=35.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHH---------HHHHhcccccCCCCcchhhhhhhcccC
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI---------RYRKTKKLALLGRDKGRAQKRKRKYSS 71 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl---------~~~k~~~~rp~~~~~~~~~~r~rk~~~ 71 (117)
....|.+|+...++. .+...+|..|+. ||...+..+.+..+...|++.-|+..+
T Consensus 9 ~~~~Cw~C~~~~~~~-----~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~ 71 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPG-----REDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQR 71 (207)
T ss_dssp --CBCSSSCCBCCSS-----CSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcccc-----cccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 567899999764432 344679999974 566665655555666678887777654
No 32
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=44.79 E-value=15 Score=27.32 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=33.7
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHHhc----ccccCCCCcc
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDKG 60 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~~----~~rp~~~~~~ 60 (117)
....|.+|+... |.|-.-..| ..+|-.|--..+..+ +-|.+.++.-
T Consensus 16 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~c~~~hr~lg~~is~v~s~~~d~~ 65 (278)
T 1dcq_A 16 GNDVCCDCGAPD-PTWLSTNLG-ILTCIECSGIHRELGVHYSRMQSLTLDVL 65 (278)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSCC
T ss_pred CCCcCCCCCCCC-CCeEEecCC-eEEcHHHHHHHhhcCCCcceeeeeecCCC
Confidence 467899999974 699999999 789999966566554 3344555543
No 33
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=42.20 E-value=4.2 Score=31.02 Aligned_cols=31 Identities=19% Similarity=0.569 Sum_probs=22.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
....|..|+...+.+--.-..| .++|..||+
T Consensus 20 ~~~~CPECGs~~t~IV~D~erG-E~VCsdCGL 50 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred cCeECcCCCCcCCeEEEeCCCC-EEEEcCCCC
Confidence 3458999998654443334456 789999998
No 34
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=39.96 E-value=13 Score=29.88 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=27.1
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 48 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k 48 (117)
....|.+|+. .-|.|-.-..| -.+|-.|-=-.|.
T Consensus 22 ~n~~c~dc~~-~~p~w~s~~~~-~~~c~~c~~~hr~ 55 (497)
T 3lvq_E 22 GNSQCCDCGA-ADPTWLSTNLG-VLTCIQCSGVHRE 55 (497)
T ss_dssp TTTBCTTTCC-BSCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCcccCCCC-CCCCEEEechh-HHhHHhhHHHHHh
Confidence 5678999995 56899999889 7899999544444
No 35
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=37.63 E-value=3.8 Score=30.10 Aligned_cols=25 Identities=32% Similarity=0.795 Sum_probs=18.2
Q ss_pred CcccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 14 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 14 ~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
.+.|.+||.+.+ |..-|. .|..||-
T Consensus 155 ~~~C~~CG~~~~-----g~~~p~-~CP~C~~ 179 (191)
T 1lko_A 155 KWRCRNCGYVHE-----GTGAPE-LCPACAH 179 (191)
T ss_dssp EEEETTTCCEEE-----EEECCS-BCTTTCC
T ss_pred eEEECCCCCEee-----CCCCCC-CCCCCcC
Confidence 688999999865 333333 8988886
No 36
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=36.42 E-value=4.3 Score=25.22 Aligned_cols=20 Identities=35% Similarity=1.027 Sum_probs=15.4
Q ss_pred cCCCCCCccchHHHHHHHHh
Q 033547 30 GGPAGPRSLCNACGIRYRKT 49 (117)
Q Consensus 30 ~gp~G~~~lCNaCGl~~~k~ 49 (117)
.+|.||.+-|.-||..|-.+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 47888889999999866443
No 37
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.44 E-value=7.1 Score=28.38 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=18.5
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 12 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 12 ~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
...+.|.+||.+..+ .-|. .|..||-
T Consensus 136 ~~~~~C~~CG~i~~~------~~p~-~CP~Cg~ 161 (170)
T 3pwf_A 136 KKVYICPICGYTAVD------EAPE-YCPVCGA 161 (170)
T ss_dssp SCEEECTTTCCEEES------CCCS-BCTTTCC
T ss_pred CCeeEeCCCCCeeCC------CCCC-CCCCCCC
Confidence 357889999998762 2222 8999985
No 38
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=32.54 E-value=9.2 Score=23.69 Aligned_cols=15 Identities=33% Similarity=0.857 Sum_probs=13.0
Q ss_pred ccccCCCCCCCcccc
Q 033547 16 SCIDCHTTRTPLWRG 30 (117)
Q Consensus 16 ~C~~C~tt~Tp~WR~ 30 (117)
.|.||+..+|+.|..
T Consensus 15 ~CpnC~~~tt~~~~G 29 (59)
T 3lpe_B 15 ICPICHSPTSENWIG 29 (59)
T ss_dssp BCTTTCCBEESCEEC
T ss_pred CCCCCCCCccCCEee
Confidence 599999888999975
No 39
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=32.47 E-value=12 Score=22.98 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCCCCCCCccccc--CCCCCCCccccCCCCCCccchHHHH
Q 033547 7 AGTFNEMNKSCID--CHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 7 ~~~~~~~~~~C~~--C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
++.....+.+|.. |++---|.++=...|....||-|+.
T Consensus 2 ~~~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 2 SSGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 41 (59)
T ss_dssp CCSSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCC
T ss_pred CccCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCC
Confidence 3445567889998 9999999998877776889999985
No 40
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=29.39 E-value=5.9 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.726 Sum_probs=17.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIR 45 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~ 45 (117)
....|.+||...- |+.+|..||.|
T Consensus 29 ~l~~c~~cG~~~~---------pH~vc~~CG~Y 52 (60)
T 2zjr_Z 29 NLTECPQCHGKKL---------SHHICPNCGYY 52 (60)
T ss_dssp CCEECTTTCCEEC---------TTBCCTTTCBS
T ss_pred CceECCCCCCEeC---------CceEcCCCCcC
Confidence 4567888886633 36799999954
No 41
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=29.30 E-value=21 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=22.0
Q ss_pred CcccccCCCCCCCcc--ccCCCCCCccchHHHHHHHH
Q 033547 14 NKSCIDCHTTRTPLW--RGGPAGPRSLCNACGIRYRK 48 (117)
Q Consensus 14 ~~~C~~C~tt~Tp~W--R~gp~G~~~lCNaCGl~~~k 48 (117)
...|+-||.++...= =.|| | .+.||.|.-.-..
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c~~ 52 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCND 52 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHHHHHH
Confidence 357999999876442 2344 3 5899999754433
No 42
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=29.02 E-value=23 Score=21.19 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=20.6
Q ss_pred CcccccCCCCCCCcc--ccCCCCCCccchHHHHH
Q 033547 14 NKSCIDCHTTRTPLW--RGGPAGPRSLCNACGIR 45 (117)
Q Consensus 14 ~~~C~~C~tt~Tp~W--R~gp~G~~~lCNaCGl~ 45 (117)
...|+-||.++...= =.|| | .+.||.|--.
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 468999999876441 2244 3 5899999754
No 43
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=28.12 E-value=14 Score=27.49 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=21.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
....|..||.+.. .|-- ..| ...||.||-
T Consensus 13 ~~~~CP~Cg~~d~-~~~~-~dg-~~~C~~Cg~ 41 (255)
T 1nui_A 13 YHIPCDNCGSSDG-NSLF-SDG-HTFCYVCEK 41 (255)
T ss_dssp EEECCSSSCCSSC-EEEE-TTS-CEEETTTCC
T ss_pred cCCcCCCCCCCCC-ceEe-CCC-CeecccCCC
Confidence 3678999999754 5533 345 589999994
No 44
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=26.87 E-value=22 Score=19.15 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=14.4
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchHHH
Q 033547 12 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACG 43 (117)
Q Consensus 12 ~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCG 43 (117)
...+.|..|+...=+. ...||.|+
T Consensus 4 ~gDW~C~~C~~~Nfa~--------R~~C~~C~ 27 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWAR--------RSECNMCN 27 (33)
T ss_dssp SSSCBCSSSCCBCCTT--------CSBCSSSC
T ss_pred CCCcccCCCCCccccc--------cccccccC
Confidence 3567788887654332 35666665
No 45
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=26.69 E-value=27 Score=24.09 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=21.9
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHh
Q 033547 10 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKT 49 (117)
Q Consensus 10 ~~~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~ 49 (117)
.+.....|.-|+...+-. -.| ...|++|-.++++.
T Consensus 25 ~~~~~~~C~VCgd~a~G~----HyG-v~sC~aCk~FFRRs 59 (117)
T 4hn5_A 25 SNAPPKLCLVCSDEASGC----HYG-VLTCGSCKVFFKRA 59 (117)
T ss_dssp -----CBCTTTCSBCCEE----ETT-EEECHHHHHHHHHH
T ss_pred CCCCCCcCCcCCCcCccc----ccC-Ccccchhhhhhhcc
Confidence 344567899998654321 245 57899999998875
No 46
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=26.56 E-value=6 Score=24.54 Aligned_cols=24 Identities=25% Similarity=0.823 Sum_probs=16.6
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIR 45 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~ 45 (117)
..-.|.+||...- ++.+|..||.|
T Consensus 29 ~l~~c~~cGe~~~---------~H~vc~~CG~Y 52 (60)
T 3v2d_5 29 TLVPCPECKAMKP---------PHTVCPECGYY 52 (60)
T ss_dssp CCEECTTTCCEEC---------TTSCCTTTCEE
T ss_pred ceeECCCCCCeec---------ceEEcCCCCcC
Confidence 3567888886443 36799999943
No 47
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.43 E-value=18 Score=22.65 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHh
Q 033547 12 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKT 49 (117)
Q Consensus 12 ~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~ 49 (117)
...-.|.+|++..+.. .++..-|..||-+.-.+
T Consensus 19 ~v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ-----AKEVIRCRECGHRVMYK 51 (63)
T ss_dssp CCCCBCSSSCCBCCCC-----SSSCCCCSSSCCCCCBC
T ss_pred CeEEECCCCCCeeecC-----CCCceECCCCCcEEEEE
Confidence 3567899999988755 23357899999654443
No 48
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.22 E-value=16 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=20.9
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchHHHH
Q 033547 11 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 11 ~~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
+...-.|.+|+...... .++...|..||-
T Consensus 25 ~~v~Y~C~~CG~~~e~~-----~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS-----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCC-----TTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeC-----CCCCccCCCCCc
Confidence 44567899999986655 222468999996
No 49
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=1.1e+02 Score=18.22 Aligned_cols=44 Identities=14% Similarity=0.355 Sum_probs=30.5
Q ss_pred CCCCCcccccCCCCCC-CccccCCCCCCccchHHHHHHHHhcccccCC
Q 033547 10 FNEMNKSCIDCHTTRT-PLWRGGPAGPRSLCNACGIRYRKTKKLALLG 56 (117)
Q Consensus 10 ~~~~~~~C~~C~tt~T-p~WR~gp~G~~~lCNaCGl~~~k~~~~rp~~ 56 (117)
.......|.-|...-+ |. .-+=| +.+|..|...|......-|+-
T Consensus 11 ~~~~~~~C~IC~~~~~~p~--~~~Cg-H~fC~~Ci~~~~~~~~~CP~C 55 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPV--VTKCR-HYFCESCALEHFRATPRCYIC 55 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEE--ECTTS-CEEEHHHHHHHHHHCSBCSSS
T ss_pred cCCCCCCCcCCCchhcCee--EccCC-CHhHHHHHHHHHHCCCcCCCc
Confidence 3445678999987643 33 24667 899999999998765555553
No 50
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=25.83 E-value=14 Score=29.18 Aligned_cols=35 Identities=23% Similarity=0.597 Sum_probs=24.9
Q ss_pred CcccccCCCCCCCcc----ccCCCC--CCccchHHHHHHHH
Q 033547 14 NKSCIDCHTTRTPLW----RGGPAG--PRSLCNACGIRYRK 48 (117)
Q Consensus 14 ~~~C~~C~tt~Tp~W----R~gp~G--~~~lCNaCGl~~~k 48 (117)
...|..|+-...-.| |....+ --+.|..||-.|+.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceec
Confidence 557999998877665 444443 23589999988763
No 51
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=23.76 E-value=29 Score=20.68 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.7
Q ss_pred CCCCCcccccCCCCCCCc
Q 033547 10 FNEMNKSCIDCHTTRTPL 27 (117)
Q Consensus 10 ~~~~~~~C~~C~tt~Tp~ 27 (117)
.....+.|..|++..+|+
T Consensus 9 ~~~D~WkC~~C~~~N~Pl 26 (46)
T 2c6a_A 9 SLADYWKCTSCNEMNPPL 26 (46)
T ss_dssp CGGGCEECTTTCCEECSS
T ss_pred CccceEecccccccCCCc
Confidence 334678999999999998
No 52
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=23.65 E-value=21 Score=20.66 Aligned_cols=8 Identities=63% Similarity=1.444 Sum_probs=6.2
Q ss_pred CCccccCC
Q 033547 25 TPLWRGGP 32 (117)
Q Consensus 25 Tp~WR~gp 32 (117)
||.||.-.
T Consensus 2 TP~WR~vs 9 (40)
T 2l1q_A 2 TPFWRGVS 9 (40)
T ss_dssp CCTTSSCS
T ss_pred cchhhhhc
Confidence 89999744
No 53
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.54 E-value=15 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=19.0
Q ss_pred CCcccccCCCCCCCccccCCCCCCc-cchHHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRS-LCNACGIR 45 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~-lCNaCGl~ 45 (117)
....|.+||..-+.. .+.. .|..||-.
T Consensus 72 ~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 467899999887662 2234 78888864
No 54
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.32 E-value=1.1e+02 Score=17.98 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=30.8
Q ss_pred CCCCCCCcccccCCCCCC--CccccCCCCCCccchHHHHHHHHhcccccC
Q 033547 8 GTFNEMNKSCIDCHTTRT--PLWRGGPAGPRSLCNACGIRYRKTKKLALL 55 (117)
Q Consensus 8 ~~~~~~~~~C~~C~tt~T--p~WR~gp~G~~~lCNaCGl~~~k~~~~rp~ 55 (117)
.........|.-|...-. ...+.-+=| +.+|..|...|......-|+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~~~~CP~ 57 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCN-HLFHDSCIVPWLEQHDSCPV 57 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTS-CEEETTTTHHHHTTTCSCTT
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCC-CeecHHHHHHHHHcCCcCcC
Confidence 334445778999976532 122334667 78999999999876544454
No 55
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.19 E-value=24 Score=21.30 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=10.6
Q ss_pred CccchHHHHHHHHhccccc
Q 033547 36 RSLCNACGIRYRKTKKLAL 54 (117)
Q Consensus 36 ~~lCNaCGl~~~k~~~~rp 54 (117)
+.+|..|........+.||
T Consensus 53 ~~yC~~C~~~~~~~~~~r~ 71 (73)
T 1wig_A 53 SIWHPACRQAARTEDSGPS 71 (73)
T ss_dssp EEECTTHHHHTSSSSCCSC
T ss_pred EEEChHHChHhhcccccCC
Confidence 5788888654433333333
No 56
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=23.12 E-value=39 Score=22.25 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchHHHHHHHHh
Q 033547 11 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKT 49 (117)
Q Consensus 11 ~~~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~~~k~ 49 (117)
......|.-|+...+-. -.| ...|++|-.++++.
T Consensus 7 ~~~~~~C~VCgd~a~g~----hyG-v~sC~aCk~FFRR~ 40 (93)
T 2han_A 7 SGSKHLCSICGDRASGK----HYG-VYSCEGCKGFFKRT 40 (93)
T ss_dssp ---CCBCTTTCSBCCEE----ETT-EEECHHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCcCe----ecC-cchhHHHHHHHHhh
Confidence 33567899999754322 245 67999999999886
No 57
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.82 E-value=14 Score=21.87 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=21.8
Q ss_pred CcccccCCCCCC----CccccCCCCC--CccchHHHHHH
Q 033547 14 NKSCIDCHTTRT----PLWRGGPAGP--RSLCNACGIRY 46 (117)
Q Consensus 14 ~~~C~~C~tt~T----p~WR~gp~G~--~~lCNaCGl~~ 46 (117)
...|..|+-.+. -+||....+. -+.|..||-.|
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 467999998542 3567665551 25898888644
No 58
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=20.96 E-value=15 Score=25.05 Aligned_cols=8 Identities=38% Similarity=1.232 Sum_probs=6.6
Q ss_pred ccchHHHH
Q 033547 37 SLCNACGI 44 (117)
Q Consensus 37 ~lCNaCGl 44 (117)
.+||+||.
T Consensus 76 RvCn~CGk 83 (96)
T 3mhs_E 76 RVCEKCGK 83 (96)
T ss_dssp EEETTTCC
T ss_pred hhhhccCC
Confidence 48999985
No 59
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.30 E-value=19 Score=25.29 Aligned_cols=27 Identities=30% Similarity=0.749 Sum_probs=18.7
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchHHHHH
Q 033547 13 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIR 45 (117)
Q Consensus 13 ~~~~C~~C~tt~Tp~WR~gp~G~~~lCNaCGl~ 45 (117)
-...|..||...... .+...|-.||-.
T Consensus 131 ~~y~C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp CCEEESSSCCEESSC------CGGGBCTTTCCB
T ss_pred EEEECCCCCCcccCC------CCCCcCCCCCCc
Confidence 356899999765432 334689999964
No 60
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.28 E-value=52 Score=18.90 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=17.8
Q ss_pred CCCCCcccc--cCCCCCCCccccCCCCCCccchHHHH
Q 033547 10 FNEMNKSCI--DCHTTRTPLWRGGPAGPRSLCNACGI 44 (117)
Q Consensus 10 ~~~~~~~C~--~C~tt~Tp~WR~gp~G~~~lCNaCGl 44 (117)
.....+.|. .|+...-+. ...||-|+.
T Consensus 10 ~~~GDW~C~~~~C~~~Nfa~--------R~~C~~C~~ 38 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNFAR--------RTSCDRCGR 38 (45)
T ss_dssp SCSSSCBCSSTTTCCBCCSS--------CSBCSSSCC
T ss_pred CCCCCcCCCCCCCCCEEccc--------cccccccCC
Confidence 344678888 688765544 567777764
Done!