BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033549
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2
SV=1
Length = 112
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 95/112 (84%), Gaps = 2/112 (1%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
M Q TGLFVGLNKGH+VT++EL PRP RKGKTSKR F+R +I+EVAG APYEKRI
Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 117
TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GGG EKKK
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112
>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3
SV=1
Length = 108
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/105 (80%), Positives = 93/105 (88%), Gaps = 2/105 (1%)
Query: 15 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 74
TGLFVGLNKGH+VTK+E PPRP +RKGKTSKR F+R +I+EVAG APYEKRITELLKVG
Sbjct: 4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63
Query: 75 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 117
KDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ G G EKKK
Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108
>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2
SV=1
Length = 113
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 15 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 74
TGLFVGLNKGH+VT++EL PRP RKGKTSKR F+R +IREVAG APYEKRITELLKVG
Sbjct: 8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67
Query: 75 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG 113
KDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GG
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGA 106
>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2
Length = 106
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 80/89 (89%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MAPKQPNTGLFVGLNKGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRI
Sbjct: 1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKK 96
TELLKVGKDKRALKV + K+G + +K++
Sbjct: 61 TELLKVGKDKRALKVRQEKVGHSQESKEE 89
>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3
SV=1
Length = 101
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 77/98 (78%)
Query: 17 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 76
+ VGLNKGH VTKK PRP+ RKG S+RV VR V+REVAG+APYE+R+ ELLKVGKD
Sbjct: 4 IAVGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKD 63
Query: 77 KRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 114
KRALK+ KRKLGTH R KKKREEM+ LRK +A GE
Sbjct: 64 KRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101
>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl36a PE=3 SV=2
Length = 99
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 80/101 (79%), Gaps = 5/101 (4%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MAP GL VGLNKG ++TK++LP RP+ RKG+ SKR FVR+++REVAGFAPYE+R+
Sbjct: 1 MAP-----GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRV 55
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
EL++ +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct: 56 MELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>sp|O94658|RL36B_SCHPO 60S ribosomal protein L36-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl36b PE=3 SV=1
Length = 99
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 78/101 (77%), Gaps = 5/101 (4%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MAP GL VGLNKG +TK++LP RP+ RKG SKR FVR+++REVAGFAPYE+R+
Sbjct: 1 MAP-----GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRV 55
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
EL++ +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct: 56 MELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1
Length = 110
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 66/88 (75%)
Query: 17 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 76
L VGL KGH VTK E PRP+ RKG SK FVR +IREV GFAP+E+R ELLKV KD
Sbjct: 7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKD 66
Query: 77 KRALKVAKRKLGTHKRAKKKREEMSNAL 104
KRALK K++LGTH R K+KR+E+SN L
Sbjct: 67 KRALKFIKKRLGTHLRGKRKRDELSNVL 94
>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1
Length = 105
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKGH VTK PR R+G+ +K FVR +IREV GFAPYE+R
Sbjct: 1 MAIRYP---MAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVL 94
>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1
Length = 105
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKGH VTK PR R+G+ +K FVR +IREV GFAPYE+R
Sbjct: 1 MAIRYP---MAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVL 94
>sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1
Length = 105
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKGH VTK PR R+G+ +K FVR +IREV GFAPYE+R
Sbjct: 1 MAIRYP---MAVGLNKGHKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3
Length = 105
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKGH VTK PR + R+G+ +K FVR +IREV GFAPYE+R
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3
Length = 105
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKGH VTK PR + R+G+ +K FVR +IREV GFAPYE+R
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q3T171|RL36_BOVIN 60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3
Length = 105
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKGH VTK PR + R+G+ +K FVR +IREV GFAPYE+R
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1
Length = 105
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKG+ VTK PR R+G+ +K FVR +IREV GFAPYE+R
Sbjct: 1 MAIRYP---MAVGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|P39032|RL36_RAT 60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2
Length = 105
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKGH VTK PR + R+G+ +K FVR +IREV FAPYE+R
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q6Q415|RL36_DANRE 60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=3 SV=1
Length = 105
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 65/86 (75%)
Query: 19 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKR 78
VGLNKGH VTK P+ + R+G+ +K F R +IREV GFAPYE+R ELLKV KDKR
Sbjct: 9 VGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKR 68
Query: 79 ALKVAKRKLGTHKRAKKKREEMSNAL 104
ALK K+++GTH RAK+KREE+SN L
Sbjct: 69 ALKFIKKRVGTHIRAKRKREELSNTL 94
>sp|P47964|RL36_MOUSE 60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2
Length = 105
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 68/97 (70%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGLNKGH VTK PR + R+ + + FVR +IREV GFAPYE+R
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV K KRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKSKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q90YT2|RL36_ICTPU 60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1
Length = 105
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 3/97 (3%)
Query: 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 67
MA + P + VGL KGH VTK P+ + R G+ +K FVR +IREV GFAPYE+R
Sbjct: 1 MAIRYP---MAVGLKKGHPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRA 57
Query: 68 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNIL 94
>sp|P49181|RL36_CAEEL 60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1
SV=3
Length = 104
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 64/89 (71%)
Query: 16 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK 75
GL VGLNKGH T+ + R KG SK+ VR ++RE+ GFAPYE+R+ E+L++ K
Sbjct: 8 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISK 67
Query: 76 DKRALKVAKRKLGTHKRAKKKREEMSNAL 104
DKRALK KR++GTH+RAK KREE+ N +
Sbjct: 68 DKRALKFLKRRIGTHRRAKGKREELQNVI 96
>sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1
Length = 105
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 8 MAPKQP-NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKR 66
MA + P TGL VGLNKGH T + + PR + KG SKR FVR V++EVAG APYE+R
Sbjct: 1 MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERR 60
Query: 67 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
+ ELL+ KDKRA K+AK++LGT RAK+K +E+ + +SR
Sbjct: 61 VIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESR 102
>sp|Q55AQ9|RL36_DICDI 60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36 PE=3
SV=1
Length = 105
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Query: 15 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 74
+G+ G NKGH V K+ + +K +KRV +R VIRE++GF+PYE+R++ELLK G
Sbjct: 12 SGIIKGFNKGHAVAKRTVTS--TFKKQVVTKRVAAIRDVIREISGFSPYERRVSELLKSG 69
Query: 75 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRA 109
DKRALKVAK++LG+ + KKKR++++N RK+ A
Sbjct: 70 LDKRALKVAKKRLGSIQAGKKKRDDIANINRKASA 104
>sp|O14455|RL36B_YEAST 60S ribosomal protein L36-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL36B PE=1 SV=3
Length = 100
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 67/94 (71%)
Query: 15 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 74
TG+ +GLNKG VT+ P+ + +KG S R FVR+++RE+AG +PYE+R+ +L++
Sbjct: 5 TGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 75 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
+KRA KVAK++LG+ RAK K EEM+N + SR
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98
>sp|P0C6E6|RL36X_HUMAN Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5 SV=1
Length = 105
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 62/92 (67%)
Query: 17 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 76
+ VGLNKGH +TK PR + G+ +K VR +I+EV GF PYE+ ELLKV KD
Sbjct: 7 MVVGLNKGHKLTKNLSKPRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKD 66
Query: 77 KRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
K+ALK K+++GTH K+KREE+SN L +R
Sbjct: 67 KQALKFIKKRVGTHIHTKRKREELSNVLAITR 98
>sp|P05745|RL36A_YEAST 60S ribosomal protein L36-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL36A PE=1 SV=3
Length = 100
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 66/94 (70%)
Query: 15 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 74
TG+ +GLNKG VT P+ + +KG S R FVR+++RE+AG +PYE+R+ +L++
Sbjct: 5 TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 75 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
+KRA KVAK++LG+ RAK K EEM+N + SR
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98
>sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3
SV=1
Length = 115
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 10/102 (9%)
Query: 17 LFVGLNKGHIVTKKELPPRPADRKGK----------TSKRVHFVRTVIREVAGFAPYEKR 66
L +GLNKGH +K D+K K ++ F+R ++REV G APYEKR
Sbjct: 7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKR 66
Query: 67 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
ELLKV KDKRALK KR+LGTH RAK+KREE+SN L + R
Sbjct: 67 TMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
>sp|Q24F59|RL36_TETTS 60S ribosomal protein L36 OS=Tetrahymena thermophila (strain SB210)
GN=RPL36 PE=1 SV=1
Length = 104
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 68/99 (68%), Gaps = 6/99 (6%)
Query: 16 GLFVGLNKGHIVTK--KELPPRPA-DRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 72
G VG+NKG I T+ K+L A RKGK KRV VR VIREV GFAPYEKRI EL+K
Sbjct: 4 GQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIK 63
Query: 73 VG--KD-KRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
G KD K+A K+A+++LGTH+RAK K+ + A+R R
Sbjct: 64 AGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVRAQR 102
>sp|P47834|RL36_CANAX 60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1
Length = 99
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 71/94 (75%)
Query: 15 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 74
+G+ G+NKG T KE+ P+ + RKG +S+R FVR++++EVAG APYE+R+ EL++
Sbjct: 4 SGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNA 63
Query: 75 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 108
+KRA K+AK++LGTHKRA +K EEM+ + +SR
Sbjct: 64 GEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97
>sp|Q8SRP1|RL36_ENCCU 60S ribosomal protein L36 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL36 PE=1 SV=1
Length = 107
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 40 KGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 99
+ +T + V E++G +P EK+ LL+ + +A K+ +++LG+HKRA K E+
Sbjct: 40 RAETQESRFLAAAVADEISGLSPLEKKAISLLEAKNNNKAQKLLRKRLGSHKRAVAKVEK 99
Query: 100 MSNAL 104
++ L
Sbjct: 100 LARML 104
>sp|P53863|JJJ1_YEAST J protein JJJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JJJ1 PE=1 SV=1
Length = 590
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 28 TKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 87
TK+E+ R + K + R + +TV R V +KR+ E K+ +++R LK +RK
Sbjct: 223 TKREVNRR--NEKARQQARNEYNKTVKRFVVFIKKLDKRMKEGAKIAEEQRKLKEQQRKN 280
Query: 88 GTHKRAK 94
+ R K
Sbjct: 281 ELNNRRK 287
>sp|Q9W6N4|THA_HIPHI Thyroid hormone receptor alpha OS=Hippoglossus hippoglossus GN=thra
PE=2 SV=1
Length = 416
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 81 KVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 114
+VAKR+L R K+KREEM L+ P E
Sbjct: 137 RVAKRRLIEENREKRKREEMVRTLQVRPEPDTAE 170
>sp|A1U2U4|CAPP_MARAV Phosphoenolpyruvate carboxylase OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=ppc PE=3 SV=1
Length = 881
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 33 PPRPADRKGK-----TSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRK 86
PP P D + T + + R V+RE F PY +++T +GK + A+RK
Sbjct: 644 PPVPKDEWREVMDWLTERSLRSYREVVRENPDFVPYFRQVTPETALGKLALGSRPARRK 702
>sp|Q1MS21|LON_LAWIP Lon protease OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=lon
PE=3 SV=1
Length = 830
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 45 KRVHFVRTVIREVAGFAPYEKRITELLKVGKDK--------RALKVAKRKLGTHKRAKKK 96
R+H V T + A A + +I + G DK LK +++LG A ++
Sbjct: 232 DRLHLVITHLTHEAEVATMQVKIQTSAREGMDKAQKDYFLREQLKAIRKELGDAIDADEE 291
Query: 97 REEMSNALRKSRAPG 111
EE+S+AL K+ P
Sbjct: 292 IEEVSSALNKAGLPA 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,821,451
Number of Sequences: 539616
Number of extensions: 1623214
Number of successful extensions: 6126
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6057
Number of HSP's gapped (non-prelim): 83
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)