Query 033549
Match_columns 117
No_of_seqs 112 out of 222
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01158 Ribosomal_L36e: Ribos 100.0 6.3E-56 1.4E-60 316.8 6.7 98 13-110 1-98 (98)
2 PTZ00196 60S ribosomal protein 100.0 3.9E-55 8.5E-60 313.0 10.4 97 14-110 2-98 (98)
3 KOG3452 60S ribosomal protein 100.0 8.8E-52 1.9E-56 296.8 9.6 99 14-112 4-102 (102)
4 COG5051 RPL36A Ribosomal prote 100.0 1.9E-35 4.2E-40 210.1 7.9 92 15-106 5-96 (97)
5 KOG2659 LisH motif-containing 44.9 39 0.00085 27.7 4.2 66 41-106 78-150 (228)
6 PF10607 CLTH: CTLH/CRA C-term 39.6 90 0.0019 21.8 5.0 43 60-104 40-82 (145)
7 PRK14132 riboflavin kinase; Pr 38.6 16 0.00034 27.4 1.0 17 48-64 21-37 (126)
8 PF08068 DKCLD: DKCLD (NUC011) 34.1 22 0.00048 23.7 1.0 19 56-74 25-43 (59)
9 PF01982 CTP-dep_RFKase: Domai 27.7 41 0.00089 25.0 1.6 16 49-64 16-31 (121)
10 PRK14165 winged helix-turn-hel 27.3 31 0.00067 27.7 1.0 17 49-65 110-126 (217)
11 PF13058 DUF3920: Protein of u 26.2 65 0.0014 24.4 2.5 28 58-92 97-124 (126)
12 PF12169 DNA_pol3_gamma3: DNA 25.0 2.4E+02 0.0053 19.6 6.1 54 52-105 4-59 (143)
13 COG1339 Transcriptional regula 20.8 54 0.0012 26.9 1.2 16 50-65 109-124 (214)
No 1
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=100.00 E-value=6.3e-56 Score=316.80 Aligned_cols=98 Identities=66% Similarity=0.979 Sum_probs=84.4
Q ss_pred CCCcceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033549 13 PNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKR 92 (117)
Q Consensus 13 ~~~giavGlnKGhkvTk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELLKvskDKRALKf~KKRlGth~R 92 (117)
|++||||||||||+||+|+++++||+++|.+|+|++||||||+|||||||||+|+||||++|+||+||||+|+|||||+|
T Consensus 1 ~~~~iavGlnkGh~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~R 80 (98)
T PF01158_consen 1 PRYGIAVGLNKGHKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIR 80 (98)
T ss_dssp --TTSTTSSS-S-----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH
T ss_pred CCCceeeeCCCCcccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 033549 93 AKKKREEMSNALRKSRAP 110 (117)
Q Consensus 93 AKrKreeL~~vl~~~Rk~ 110 (117)
||+|+|||+|||++||++
T Consensus 81 AKrKrEel~~vl~~~rk~ 98 (98)
T PF01158_consen 81 AKRKREELSNVLAAMRKA 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999985
No 2
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=100.00 E-value=3.9e-55 Score=312.97 Aligned_cols=97 Identities=65% Similarity=0.991 Sum_probs=95.2
Q ss_pred CCcceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 033549 14 NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA 93 (117)
Q Consensus 14 ~~giavGlnKGhkvTk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELLKvskDKRALKf~KKRlGth~RA 93 (117)
++||||||||||+||+++++|+||+++|.+|+|++||||||+|||||||||+|+||||++|+|||||||+|+|||||+||
T Consensus 2 ~~g~avGlnKGh~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~Ra 81 (98)
T PTZ00196 2 RTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRA 81 (98)
T ss_pred CCceeeecCCCcccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 033549 94 KKKREEMSNALRKSRAP 110 (117)
Q Consensus 94 KrKreeL~~vl~~~Rk~ 110 (117)
|+|+|||+|||++||+.
T Consensus 82 K~Kreel~~vl~~~rkk 98 (98)
T PTZ00196 82 KAKRDEIQEALRAQRKK 98 (98)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999973
No 3
>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-52 Score=296.78 Aligned_cols=99 Identities=66% Similarity=0.938 Sum_probs=96.6
Q ss_pred CCcceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 033549 14 NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA 93 (117)
Q Consensus 14 ~~giavGlnKGhkvTk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELLKvskDKRALKf~KKRlGth~RA 93 (117)
.+|++|||||||+||++++.||+|+++|.+|+||+||+|||+|||||||||+|+||||++|+||||+||+|+|||||+||
T Consensus 4 ~~~~~vglnkgh~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RA 83 (102)
T KOG3452|consen 4 CYGLAVGLNKGHKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRA 83 (102)
T ss_pred ccceeecccccchhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 033549 94 KKKREEMSNALRKSRAPGG 112 (117)
Q Consensus 94 KrKreeL~~vl~~~Rk~a~ 112 (117)
|+|+|||+|||++||++++
T Consensus 84 k~KrEELsnvl~~~rk~~~ 102 (102)
T KOG3452|consen 84 KRKREELSNVLAAMRKAHA 102 (102)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999999999853
No 4
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-35 Score=210.06 Aligned_cols=92 Identities=52% Similarity=0.904 Sum_probs=90.0
Q ss_pred CcceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHH
Q 033549 15 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 94 (117)
Q Consensus 15 ~giavGlnKGhkvTk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELLKvskDKRALKf~KKRlGth~RAK 94 (117)
.|+++|||+|-+||++...+|||.++|.+|+|+.||+++++|++||+|||+++||||++|.|++|.|++|||||||+||+
T Consensus 5 ~g~~~glNkgKkvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAk 84 (97)
T COG5051 5 PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAK 84 (97)
T ss_pred cchhhhhcccceeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 033549 95 KKREEMSNALRK 106 (117)
Q Consensus 95 rKreeL~~vl~~ 106 (117)
.|.|||.++|++
T Consensus 85 aKvEel~~~i~~ 96 (97)
T COG5051 85 AKVEELTSVIQS 96 (97)
T ss_pred HHHHHHHHHHhc
Confidence 999999999975
No 5
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.88 E-value=39 Score=27.71 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=47.1
Q ss_pred CCCCchhHHHHHHHHHhhccch------hHHHHHHHHhhcchhHHHHHHHHhhhhhHH-HHHHHHHHHHHHHH
Q 033549 41 GKTSKRVHFVRTVIREVAGFAP------YEKRITELLKVGKDKRALKVAKRKLGTHKR-AKKKREEMSNALRK 106 (117)
Q Consensus 41 g~~tkr~kfVr~vIrEV~GfAP------YErr~mELLKvskDKRALKf~KKRlGth~R-AKrKreeL~~vl~~ 106 (117)
|....=..++.++-.|+..-.+ -..+.+|||+.++-..|++|+.-+|--.-- .-.+.+||..++..
T Consensus 78 G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~l 150 (228)
T KOG2659|consen 78 GQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLAL 150 (228)
T ss_pred ccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 3444444566777777766665 356999999999999999999998844322 22678888877753
No 6
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=39.64 E-value=90 Score=21.85 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=30.1
Q ss_pred cchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 033549 60 FAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 104 (117)
Q Consensus 60 fAPYErr~mELLKvskDKRALKf~KKRlGth~RAKrKreeL~~vl 104 (117)
|.=+-...+|||+.++--.|+.|+++.+ ++-- ....+++..++
T Consensus 40 f~L~~q~fiell~~~~~~~Ai~y~r~~l-~~~~-~~~~~~l~~~~ 82 (145)
T PF10607_consen 40 FELRCQQFIELLREGDIMEAIEYARKHL-SPFN-DEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhH-HHHHHHHHHHH
Confidence 4455668899999999999999999988 4222 23445555444
No 7
>PRK14132 riboflavin kinase; Provisional
Probab=38.57 E-value=16 Score=27.42 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhccchhH
Q 033549 48 HFVRTVIREVAGFAPYE 64 (117)
Q Consensus 48 kfVr~vIrEV~GfAPYE 64 (117)
...++-++|.+||.||.
T Consensus 21 ~~Y~~qf~~~LGf~PyP 37 (126)
T PRK14132 21 PPYKEKFKEKLGFTPYE 37 (126)
T ss_pred HHHHHHHHHHhCCcCCC
Confidence 34678899999999996
No 8
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [].; PDB: 3ZV0_D 3UAI_A 3U28_A 2AUS_C 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=34.10 E-value=22 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=13.6
Q ss_pred HhhccchhHHHHHHHHhhc
Q 033549 56 EVAGFAPYEKRITELLKVG 74 (117)
Q Consensus 56 EV~GfAPYErr~mELLKvs 74 (117)
.-+|..|++|-+-|+|+.|
T Consensus 25 ~~~G~~P~~R~i~~~i~~G 43 (59)
T PF08068_consen 25 PPYGCSPLKRPIEEYIKYG 43 (59)
T ss_dssp TTSS--GGGS-HHHHHHTE
T ss_pred cccCcCcccCCHHHHHhCC
Confidence 4589999999999999854
No 9
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=27.69 E-value=41 Score=25.02 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=10.8
Q ss_pred HHHHHHHHhhccchhH
Q 033549 49 FVRTVIREVAGFAPYE 64 (117)
Q Consensus 49 fVr~vIrEV~GfAPYE 64 (117)
..++-++|.+||.||.
T Consensus 16 ~Y~~qf~~~LGf~PyP 31 (121)
T PF01982_consen 16 GYRRQFREKLGFEPYP 31 (121)
T ss_dssp HHHHHHHHHCSS---S
T ss_pred HHHHHHHHHhCCCCCC
Confidence 4678899999999995
No 10
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=27.29 E-value=31 Score=27.66 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.4
Q ss_pred HHHHHHHHhhccchhHH
Q 033549 49 FVRTVIREVAGFAPYEK 65 (117)
Q Consensus 49 fVr~vIrEV~GfAPYEr 65 (117)
..++-++|.+||.||.=
T Consensus 110 ~Y~~~f~~~lGf~PypG 126 (217)
T PRK14165 110 GYKIQFEEKLGFIPYPG 126 (217)
T ss_pred HHHHHHHHHhCCcCCCC
Confidence 46788999999999963
No 11
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=26.17 E-value=65 Score=24.42 Aligned_cols=28 Identities=50% Similarity=0.634 Sum_probs=22.3
Q ss_pred hccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033549 58 AGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKR 92 (117)
Q Consensus 58 ~GfAPYErr~mELLKvskDKRALKf~KKRlGth~R 92 (117)
.|-.|||.|.||- | |..|+-..|--.+|
T Consensus 97 vg~e~yEeR~ie~-----D--Ar~FAe~kl~ey~~ 124 (126)
T PF13058_consen 97 VGKEPYEERWIEK-----D--ARAFAERKLDEYKR 124 (126)
T ss_pred eccchHHHHHHHH-----H--HHHHHHHHHHHHhc
Confidence 7999999999984 5 88999887765443
No 12
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=24.96 E-value=2.4e+02 Score=19.56 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=35.6
Q ss_pred HHHHHhhccchhHH--HHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 033549 52 TVIREVAGFAPYEK--RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALR 105 (117)
Q Consensus 52 ~vIrEV~GfAPYEr--r~mELLKvskDKRALKf~KKRlGth~RAKrKreeL~~vl~ 105 (117)
+-|+++.|..|.|. .+++.|-.+.-..++.++..=+-.-+-...=.++|.+.++
T Consensus 4 e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R 59 (143)
T PF12169_consen 4 EDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLR 59 (143)
T ss_dssp HHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56899999999997 5666666788888888888755444444444455554443
No 13
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=20.81 E-value=54 Score=26.91 Aligned_cols=16 Identities=44% Similarity=0.738 Sum_probs=13.6
Q ss_pred HHHHHHHhhccchhHH
Q 033549 50 VRTVIREVAGFAPYEK 65 (117)
Q Consensus 50 Vr~vIrEV~GfAPYEr 65 (117)
-+..++|..||.||.=
T Consensus 109 Y~~qf~ekLGf~PyPG 124 (214)
T COG1339 109 YRRQFREKLGFDPYPG 124 (214)
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3788999999999963
Done!