Query 033549
Match_columns 117
No_of_seqs 112 out of 222
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:14:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_k 60S ribosomal protein L 100.0 1.6E-59 5.5E-64 341.1 -4.4 105 8-112 1-105 (112)
2 3izc_k 60S ribosomal protein R 100.0 1.1E-57 3.8E-62 326.0 1.9 96 14-109 4-99 (100)
3 4a18_Q RPL36, 60S ribosomal pr 100.0 1.7E-55 5.9E-60 316.5 10.0 96 14-109 2-103 (104)
4 3qks_C DNA double-strand break 43.3 8.1 0.00028 22.5 0.9 13 60-72 4-16 (34)
5 3r0a_A Putative transcriptiona 37.1 26 0.00089 23.4 2.9 27 50-76 14-40 (123)
6 2oyn_A Hypothetical protein MJ 29.8 23 0.00077 26.1 1.7 18 47-64 26-43 (146)
7 3mxn_A RECQ-mediated genome in 17.4 1.2E+02 0.004 22.6 3.4 50 17-67 37-95 (157)
8 2yy0_A C-MYC-binding protein; 17.0 1.3E+02 0.0044 18.2 3.0 10 79-88 3-12 (53)
9 1xu0_A Prion protein, XLPRP; a 14.1 76 0.0026 23.2 1.6 15 45-59 109-123 (130)
10 1u3m_A CHPRP, prion-like prote 11.5 1E+02 0.0035 22.1 1.6 15 46-60 94-108 (117)
No 1
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=100.00 E-value=1.6e-59 Score=341.06 Aligned_cols=105 Identities=85% Similarity=1.295 Sum_probs=69.0
Q ss_pred cCCCCCCCcceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhh
Q 033549 8 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 87 (117)
Q Consensus 8 m~~~~~~~giavGlnKGhkvTk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELLKvskDKRALKf~KKRl 87 (117)
|++..|++||||||||||+||+|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+||
T Consensus 1 m~~~~~~~~iavGlnKGhkvTk~~~k~r~s~~kg~ltK~tkfVrdiIrEV~GfAPYErR~mELLKvskDKRALKf~KKRl 80 (112)
T 3iz5_k 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (112)
T ss_dssp -----------------------------------CTTTSSCSHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHSSCC
T ss_pred CCCCCCCCCeeeecCCCcccCCCCCCCCcccccCCCcchhHHHHHHHHHHhcCchHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 45555679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCCCC
Q 033549 88 GTHKRAKKKREEMSNALRKSRAPGG 112 (117)
Q Consensus 88 Gth~RAKrKreeL~~vl~~~Rk~a~ 112 (117)
|||+|||+|+|||+|||++||+++|
T Consensus 81 Gth~RAKrKreel~~vl~~~Rka~~ 105 (112)
T 3iz5_k 81 GTHKRAKKKREEMSSVLRKMRSAGG 105 (112)
T ss_dssp SHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999866
No 2
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=100.00 E-value=1.1e-57 Score=326.04 Aligned_cols=96 Identities=47% Similarity=0.777 Sum_probs=75.6
Q ss_pred CCcceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 033549 14 NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA 93 (117)
Q Consensus 14 ~~giavGlnKGhkvTk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELLKvskDKRALKf~KKRlGth~RA 93 (117)
++||||||||||+||+|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+|||||+||
T Consensus 4 ~~~iavGlnKGhkvtk~~~k~r~s~~kg~~tK~tkfVrdiIrEV~GfaPYErr~mELLkvskdKrAlKf~KKRlGth~RA 83 (100)
T 3izc_k 4 KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRA 83 (100)
T ss_dssp --------------------CCCCSSCSHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSCS
T ss_pred ccceeeeccCCcccccCCCCCCcccccCCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhcchHHHHHHHHHHhhHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 033549 94 KKKREEMSNALRKSRA 109 (117)
Q Consensus 94 KrKreeL~~vl~~~Rk 109 (117)
|+|+|||+|||++||+
T Consensus 84 KrKreel~~vl~~~Rk 99 (100)
T 3izc_k 84 KAKVEEMNNIIAASRR 99 (100)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999997
No 3
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=100.00 E-value=1.7e-55 Score=316.52 Aligned_cols=96 Identities=54% Similarity=0.816 Sum_probs=94.4
Q ss_pred CCcceeeecCCceec---ccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcc---hhHHHHHHHHhh
Q 033549 14 NTGLFVGLNKGHIVT---KKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK---DKRALKVAKRKL 87 (117)
Q Consensus 14 ~~giavGlnKGhkvT---k~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELLKvsk---DKRALKf~KKRl 87 (117)
++||||||||||+|| +|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+ |||||||+|+||
T Consensus 2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl 81 (104)
T 4a18_Q 2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL 81 (104)
T ss_dssp CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence 478999999999999 99999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhC
Q 033549 88 GTHKRAKKKREEMSNALRKSRA 109 (117)
Q Consensus 88 Gth~RAKrKreeL~~vl~~~Rk 109 (117)
|||+|||+|+|||+|||++||+
T Consensus 82 Gth~RAKrKreel~~vl~~~Rk 103 (104)
T 4a18_Q 82 GTHRRAKVKKALLEEAVRAQRK 103 (104)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999996
No 4
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=43.27 E-value=8.1 Score=22.49 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=9.3
Q ss_pred cchhHHHHHHHHh
Q 033549 60 FAPYEKRITELLK 72 (117)
Q Consensus 60 fAPYErr~mELLK 72 (117)
|.|.|.+++||+-
T Consensus 4 Ft~~ElKiI~l~G 16 (34)
T 3qks_C 4 FTEFELKIIDILG 16 (34)
T ss_dssp --CHHHHHHHHC-
T ss_pred ccHHHHHHHHHHc
Confidence 7899999999963
No 5
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=37.07 E-value=26 Score=23.41 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHHHHHhhccchhHHHHHHHHhhcch
Q 033549 50 VRTVIREVAGFAPYEKRITELLKVGKD 76 (117)
Q Consensus 50 Vr~vIrEV~GfAPYErr~mELLKvskD 76 (117)
+.+++..+.|+.|.|..++.+|-....
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~ 40 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPD 40 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 467888899999999999999875543
No 6
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=29.76 E-value=23 Score=26.10 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhhccchhH
Q 033549 47 VHFVRTVIREVAGFAPYE 64 (117)
Q Consensus 47 ~kfVr~vIrEV~GfAPYE 64 (117)
..+.++-++|.+||.||.
T Consensus 26 l~~Y~~qf~~~LGF~PfP 43 (146)
T 2oyn_A 26 LPPYKEIFKKILGFEPYE 43 (146)
T ss_dssp SHHHHHHHHHHHSSCCCS
T ss_pred CHHHHHHHHHHhCCcCCC
Confidence 356789999999999995
No 7
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=17.39 E-value=1.2e+02 Score=22.60 Aligned_cols=50 Identities=20% Similarity=0.128 Sum_probs=31.5
Q ss_pred ceeeecCCceecccCCCCCCCcccCCC---------CchhHHHHHHHHHhhccchhHHHH
Q 033549 17 LFVGLNKGHIVTKKELPPRPADRKGKT---------SKRVHFVRTVIREVAGFAPYEKRI 67 (117)
Q Consensus 17 iavGlnKGhkvTk~~~k~r~s~~kg~~---------tkr~kfVr~vIrEV~GfAPYErr~ 67 (117)
..++-=||+.||=. ...+.++-.=.+ .=-+.|..+|+.+..||+|-|-..
T Consensus 37 ~~~~kVKafI~tl~-~~l~~~~~~W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~ 95 (157)
T 3mxn_A 37 VTTVKVKAFIVTLT-GNLSSSGGIWSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQ 95 (157)
T ss_dssp CEEEEEEEEEEEEC-SCCBCGGGSCBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHH
T ss_pred ceEEEEEEEEEEec-cceeecCCEEEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHH
Confidence 46666789988732 222222211112 223479999999999999999544
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=16.95 E-value=1.3e+02 Score=18.23 Aligned_cols=10 Identities=50% Similarity=0.694 Sum_probs=0.0
Q ss_pred HHHHHHHhhh
Q 033549 79 ALKVAKRKLG 88 (117)
Q Consensus 79 ALKf~KKRlG 88 (117)
|+.|||+-||
T Consensus 3 AlefIk~~LG 12 (53)
T 2yy0_A 3 ALDFLKHHLG 12 (53)
T ss_dssp ----------
T ss_pred HHHHHHHHcC
Confidence 6777777777
No 9
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=14.12 E-value=76 Score=23.15 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHhhc
Q 033549 45 KRVHFVRTVIREVAG 59 (117)
Q Consensus 45 kr~kfVr~vIrEV~G 59 (117)
-+++.++-||+|.|-
T Consensus 109 l~~rvl~r~i~emC~ 123 (130)
T 1xu0_A 109 LDTTVKSQIIREMCI 123 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999999993
No 10
>1u3m_A CHPRP, prion-like protein; prion protein, TSE, membrane protein; NMR {Gallus gallus} SCOP: d.6.1.1
Probab=11.48 E-value=1e+02 Score=22.12 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHhhcc
Q 033549 46 RVHFVRTVIREVAGF 60 (117)
Q Consensus 46 r~kfVr~vIrEV~Gf 60 (117)
.++.++.||+|.|-.
T Consensus 94 ~~rv~~rvI~EmC~~ 108 (117)
T 1u3m_A 94 ENKVVTKVIREMCVQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 778999999999943
Done!