Query 033549
Match_columns 117
No_of_seqs 112 out of 222
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 05:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033549.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033549hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a1 g.39.1.3 (A:1-35) Pinc 36.7 3.5 0.00026 22.8 0.1 8 58-65 15-22 (35)
2 d1tuaa1 d.51.1.1 (A:1-84) Hypo 27.9 12 0.00087 23.1 1.5 24 46-71 58-82 (84)
3 d1sfxa_ a.4.5.50 (A:) Hypothet 26.2 35 0.0025 20.7 3.6 16 58-73 16-31 (109)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 23.9 18 0.0013 20.7 1.7 16 43-58 27-42 (50)
5 d2hzaa1 a.43.1.3 (A:1-48) Nick 21.7 26 0.0019 19.9 2.1 16 43-58 25-40 (48)
6 d3ctaa2 b.43.5.2 (A:90-220) CT 19.3 18 0.0013 24.4 1.1 16 50-65 26-41 (131)
7 d2vbua1 b.43.5.2 (A:2-132) CTP 18.0 20 0.0015 24.1 1.2 15 50-64 26-40 (131)
8 d2hkja2 d.14.1.3 (A:307-470) T 17.4 60 0.0044 22.6 3.7 25 77-101 135-159 (164)
9 d3bqoa1 a.146.1.1 (A:62-265) T 16.1 73 0.0053 22.9 4.0 51 48-106 109-159 (204)
10 d1oywa2 c.37.1.19 (A:1-206) Re 14.1 65 0.0047 20.6 3.0 27 49-75 12-41 (206)
No 1
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.74 E-value=3.5 Score=22.76 Aligned_cols=8 Identities=75% Similarity=1.194 Sum_probs=6.8
Q ss_pred hccchhHH
Q 033549 58 AGFAPYEK 65 (117)
Q Consensus 58 ~GfAPYEr 65 (117)
.||+|.|+
T Consensus 15 ~gF~p~Ek 22 (35)
T d1g47a1 15 GGFAPAEK 22 (35)
T ss_dssp CBCCSTTT
T ss_pred cCCCchHH
Confidence 48999997
No 2
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=27.92 E-value=12 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhh-ccchhHHHHHHHH
Q 033549 46 RVHFVRTVIREVA-GFAPYEKRITELL 71 (117)
Q Consensus 46 r~kfVr~vIrEV~-GfAPYErr~mELL 71 (117)
-..-++|+|+++. ||+|= .++.||
T Consensus 58 a~~~a~~iI~aI~rGf~Pe--~a~~ll 82 (84)
T d1tuaa1 58 NLMKAAEVVKAISLGFPPE--KAFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHH--HHGGGG
T ss_pred HHHHHHHHHHHHhCCCChH--HHHHhc
Confidence 4556899999994 99994 344554
No 3
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.22 E-value=35 Score=20.74 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.0
Q ss_pred hccchhHHHHHHHHhh
Q 033549 58 AGFAPYEKRITELLKV 73 (117)
Q Consensus 58 ~GfAPYErr~mELLKv 73 (117)
.||.|+|.+++..|-.
T Consensus 16 lGlt~~e~~v~~~L~~ 31 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLE 31 (109)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999887753
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.86 E-value=18 Score=20.72 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.2
Q ss_pred CCchhHHHHHHHHHhh
Q 033549 43 TSKRVHFVRTVIREVA 58 (117)
Q Consensus 43 ~tkr~kfVr~vIrEV~ 58 (117)
-+.|..+|||+||+..
T Consensus 27 y~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 27 YENRSEAIRDLIRDFI 42 (50)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4679999999999853
No 5
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.68 E-value=26 Score=19.85 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHhh
Q 033549 43 TSKRVHFVRTVIREVA 58 (117)
Q Consensus 43 ~tkr~kfVr~vIrEV~ 58 (117)
-+-|..+|||+||+..
T Consensus 25 y~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 25 YNNRSEAIRDILRSAL 40 (48)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4679999999999853
No 6
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=19.28 E-value=18 Score=24.44 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHhhccchhHH
Q 033549 50 VRTVIREVAGFAPYEK 65 (117)
Q Consensus 50 Vr~vIrEV~GfAPYEr 65 (117)
.++-++|.+||.||.=
T Consensus 26 Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 26 YIIQFQEKLGIIPYLG 41 (131)
T ss_dssp CHHHHHHHSCSCCCC-
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3678899999999963
No 7
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=18.03 E-value=20 Score=24.10 Aligned_cols=15 Identities=33% Similarity=0.977 Sum_probs=13.3
Q ss_pred HHHHHHHhhccchhH
Q 033549 50 VRTVIREVAGFAPYE 64 (117)
Q Consensus 50 Vr~vIrEV~GfAPYE 64 (117)
.++-++|..||.||.
T Consensus 26 Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 26 YKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHhCCCCCC
Confidence 578899999999994
No 8
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=17.37 E-value=60 Score=22.65 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHH
Q 033549 77 KRALKVAKRKLGTHKRAKKKREEMS 101 (117)
Q Consensus 77 KRALKf~KKRlGth~RAKrKreeL~ 101 (117)
+.||..+=++|.+|++-++|.+|..
T Consensus 135 rlAl~~~~R~L~~~l~kk~k~~~~~ 159 (164)
T d2hkja2 135 KNALMEVARKLKQYLSEKRKEQEAK 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999998888777665
No 9
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.09 E-value=73 Score=22.94 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 033549 48 HFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRK 106 (117)
Q Consensus 48 kfVr~vIrEV~GfAPYErr~mELLKvskDKRALKf~KKRlGth~RAKrKreeL~~vl~~ 106 (117)
.-++++|+|.+ ++=.++.+..+.|-..+++=.|.--.-+..+.+|..|+..
T Consensus 109 e~i~~lik~qA--------V~vCmekg~fk~A~eilkr~f~~~~~~~~lr~~L~~iI~~ 159 (204)
T d3bqoa1 109 EEIQNLIKIQA--------IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 159 (204)
T ss_dssp HHHHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHH--------HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 34666666654 5666788999999999999667656566788889888853
No 10
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=14.09 E-value=65 Score=20.60 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcc---chhHHHHHHHHhhcc
Q 033549 49 FVRTVIREVAGF---APYEKRITELLKVGK 75 (117)
Q Consensus 49 fVr~vIrEV~Gf---APYErr~mELLKvsk 75 (117)
-++++++|..|| -||-..+++.+-.++
T Consensus 12 ~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~ 41 (206)
T d1oywa2 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSGR 41 (206)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC
Confidence 378999999875 589888888776544
Done!