BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033552
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEY9|NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein
OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1
Length = 156
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 74/88 (84%)
Query: 30 LCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89
LCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+
Sbjct: 69 LCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGD 128
Query: 90 LGQEEQDKLKADYTLVVEDVKELASSLF 117
L EE KLK DY V +D+KELA+S+
Sbjct: 129 LTAEELAKLKTDYEQVSDDIKELATSVI 156
>sp|P32495|NHP2_YEAST H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NHP2 PE=1
SV=2
Length = 156
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 62/90 (68%)
Query: 23 LLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
L E L VIAG+ISP DVI+H+P+LCE+ +PYI++ SK+DL AGATKRPT V ++
Sbjct: 67 LRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIV 126
Query: 83 TKPTKGELGQEEQDKLKADYTLVVEDVKEL 112
K + G+ ++++ K + VV++V+ L
Sbjct: 127 PGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156
>sp|Q9P7H0|NHP2_SCHPO H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nhp2 PE=1 SV=1
Length = 154
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86
E L ++AG+ISP+DVI+H+P+LCE++++PY+Y SKE L A TKRPT CV+++
Sbjct: 69 EKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGK 128
Query: 87 KGELGQEEQDKLKADYTLVVEDVKEL 112
K ++ + E+ K Y ++++V L
Sbjct: 129 KKDMSKVEE--YKESYEEIIKEVPAL 152
>sp|Q60YI3|NHP2_CAEBR Putative H/ACA ribonucleoprotein complex subunit 2-like protein
OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1
Length = 163
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 15 GVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKR 74
G+ + L +E +C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L A +R
Sbjct: 72 GIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRR 131
Query: 75 PTCCVLVLTKPT 86
P+ +L+ KP+
Sbjct: 132 PS--ILIFVKPS 141
>sp|Q9XXD4|NHP2_CAEEL Putative H/ACA ribonucleoprotein complex subunit 2-like protein
OS=Caenorhabditis elegans GN=Y48A6B.3 PE=3 SV=1
Length = 163
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 23 LLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
L +E +C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L A +RP+ +L+
Sbjct: 80 LRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIF 137
Query: 83 TKPT 86
KP+
Sbjct: 138 VKPS 141
>sp|Q8I7X7|NHP2_BRABE H/ACA ribonucleoprotein complex subunit 2-like protein
OS=Branchiostoma belcheri PE=2 SV=1
Length = 159
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 30 LCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 81
+ +IAG+ +PI+V H+P++CE++ IPY YV +K+DL A +KRPTCCVL+
Sbjct: 84 IVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL 135
>sp|Q6PBV6|NHP2_DANRE H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio
rerio GN=nhp2 PE=2 SV=1
Length = 150
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86
E + V AG+ PIDV H+PI+CE+ +PY YV SK DL ++ +KRPTC +++ KP
Sbjct: 72 ETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP- 128
Query: 87 KGELGQEEQDKLKADYTLVVEDVKEL 112
D+ K Y VE+V L
Sbjct: 129 --------HDEYKEAYDECVEEVTSL 146
>sp|Q9CRB2|NHP2_MOUSE H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2
PE=2 SV=1
Length = 153
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 30 LCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 81
+ V+AG+ PI+V H+P+LCE+ ++PY+Y+ SK DL A +KRPTC ++V
Sbjct: 78 IMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV 129
>sp|Q6P8C4|NHP2_XENTR H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus
tropicalis GN=nhp2 PE=2 SV=1
Length = 149
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 81
E + V+AG+ PI+V H+P++CE+ IPY YV SK DL A +KRPTC +L+
Sbjct: 71 EKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125
>sp|Q9NX24|NHP2_HUMAN H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2
PE=1 SV=1
Length = 153
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 39/52 (75%)
Query: 30 LCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 81
+ V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V
Sbjct: 78 IMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129
>sp|Q5RC65|NHP2_PONAB H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2
PE=2 SV=1
Length = 153
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 39/52 (75%)
Query: 30 LCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 81
+ V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V
Sbjct: 78 IMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129
>sp|Q6NTV9|NHP2_XENLA H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus
laevis GN=nhp2 PE=2 SV=1
Length = 149
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 30 LCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 81
+ V+AG+ PI+V H+P++CE+ IPY YV SK DL A +KRPTC +L+
Sbjct: 74 IVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125
>sp|Q5E950|NHP2_BOVIN H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2
PE=2 SV=1
Length = 153
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 32 VIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 81
V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V
Sbjct: 80 VLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129
>sp|Q9V3U2|NHP2_DROME H/ACA ribonucleoprotein complex subunit 2-like protein
OS=Drosophila melanogaster GN=NHP2 PE=1 SV=1
Length = 160
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86
E +C+ AG+++P+D++ H+P +CEE IPY Y S+ DL A KR T +LV
Sbjct: 82 ETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEE 141
Query: 87 KGELGQEEQDKLKA 100
+L E +++L A
Sbjct: 142 YKDLYDEVKEELSA 155
>sp|Q6XIP0|NHP2_DROYA H/ACA ribonucleoprotein complex subunit 2-like protein
OS=Drosophila yakuba GN=NHP2 PE=2 SV=1
Length = 160
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86
E +C+ AG+++P+D++ H+P +CEE IPY Y S+ DL A KR T +LV
Sbjct: 82 ETGICIFAGDVTPVDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVRQNDE 141
Query: 87 KGELGQEEQDKLKA 100
+L E +++L A
Sbjct: 142 YKDLYDEVKEELSA 155
>sp|B6YWH9|RL7A_THEON 50S ribosomal protein L7Ae OS=Thermococcus onnurineus (strain NA1)
GN=rpl7ae PE=3 SV=1
Length = 123
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86
+ +L +IA ++ P +++ H+P LCEE +IPYIYV SK++L A + P V ++ +P
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVPAASVAII-EPG 105
Query: 87 KG 88
KG
Sbjct: 106 KG 107
>sp|A6UT51|RL7A_META3 50S ribosomal protein L7Ae OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl7ae PE=3 SV=1
Length = 117
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLT 83
+L V+A ++ P +++ H+PI+CEE IPY Y+A+KEDL A + T V ++
Sbjct: 43 AKLVVLAKDVQPEEIVAHIPIICEEKGIPYTYIATKEDLGKAIGLEVSTAAVAIIA 98
>sp|Q4P0K3|SNU13_USTMA 13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SNU13 PE=3 SV=1
Length = 126
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 87
C V+A ++ PI+++ H+P+LCE+ ++PY++V SK L A RP V T +
Sbjct: 49 CEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEAR 108
Query: 88 GELGQEEQDKLKADYTLV 105
Q + KL + L+
Sbjct: 109 ELQSQIQTVKLAIERLLI 126
>sp|P54066|RL7A_METJA 50S ribosomal protein L7Ae OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl7ae PE=1 SV=2
Length = 117
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 87
+L +IA ++ P +V+ H+P LCEE IPY YVASK+DL A + V ++ +
Sbjct: 43 AKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDA 102
Query: 88 GEL 90
EL
Sbjct: 103 EEL 105
>sp|Q9U3Z7|NH2L1_DROME NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=2
SV=1
Length = 127
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 30 LCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89
+ V+AG+ PI+++ H+P+LCE+ ++PY++V SK+ L A RP V T
Sbjct: 52 IVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTN----- 106
Query: 90 LGQEEQDKLKADYTLVVEDVKEL 112
E +LK+ T + ++++ L
Sbjct: 107 ----EGSQLKSQITSIQQEIERL 125
>sp|Q5JGR3|RL7A_PYRKO 50S ribosomal protein L7Ae OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl7ae PE=3 SV=2
Length = 123
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L +IA ++ P +++ H+P LCEE +IPY+YV SK++L A + P V ++
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYVYVPSKKELGAAAGLEVPAASVAII 102
>sp|P62427|RL7A_NANEQ 50S ribosomal protein L7Ae OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rpl7ae PE=3 SV=1
Length = 125
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA 71
+ +L +IA N++P +++ H+P LCEE +PY+YV SKE+L A
Sbjct: 48 QAKLVIIAENVNPPEIVMHLPALCEEKGVPYVYVPSKEELGKAAG 92
>sp|O29494|RL7A_ARCFU 50S ribosomal protein L7Ae OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl7ae PE=1 SV=1
Length = 119
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 87
+L IA ++ P +++ H+P+LCEE ++PYIYV SK DL A + P ++ +
Sbjct: 44 AKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAII---NE 100
Query: 88 GELGQE 93
GEL +E
Sbjct: 101 GELRKE 106
>sp|P62426|RL7A_METMP 50S ribosomal protein L7Ae OS=Methanococcus maripaludis (strain S2
/ LL) GN=rpl7ae PE=3 SV=1
Length = 117
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 87
+L VIA ++ P +++ H+P++C+E I Y Y ++KE L A + PT + V+ + +
Sbjct: 43 AKLVVIAQDVQPEEIVAHIPVICDEKGIAYSYSSTKEALGKAAGLEVPTSAIAVVAEGSA 102
Query: 88 GEL 90
EL
Sbjct: 103 DEL 105
>sp|B8D6E8|RL7A_DESK1 50S ribosomal protein L7Ae OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl7ae PE=3 SV=1
Length = 127
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L VIA ++ P +++ H+P+LC+E IPY+YV SK+ L A + V V+
Sbjct: 48 QAKLVVIAEDVDPPEIVAHLPLLCDEKKIPYVYVPSKQKLGQAAGIEVSAASVAVI 103
>sp|Q4J8P1|RL7A_SULAC 50S ribosomal protein L7Ae OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl7ae PE=3 SV=1
Length = 126
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 69
+ +L VIA ++ P +++ H+P+LCEE IPY+YV SK+ L A
Sbjct: 47 QAKLVVIAEDVQPEEIVAHLPLLCEEKKIPYVYVPSKKSLGEA 89
>sp|B1Y9V4|RL7A_PYRNV 50S ribosomal protein L7Ae OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl7ae PE=3 SV=1
Length = 151
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+L +IA ++ P +V+ H+P+LCEE +PY+YV SKE L A +V+
Sbjct: 63 AKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVSAAAAVVI 117
>sp|Q8ZTA5|RL7A_PYRAE 50S ribosomal protein L7Ae OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl7ae PE=3 SV=1
Length = 151
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+L +IA ++ P +V+ H+P+LCEE +PY+YV SKE L A +V+
Sbjct: 63 AKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVSAAAAVVI 117
>sp|C3N8Q2|RL7A_SULIY 50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl7ae PE=3 SV=1
Length = 127
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L VIA ++ P +++ H+P+LC+E IPY+YV+SK+ L A + T +L
Sbjct: 47 QAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102
>sp|C3NMR6|RL7A_SULIN 50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl7ae PE=3 SV=1
Length = 127
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L VIA ++ P +++ H+P+LC+E IPY+YV+SK+ L A + T +L
Sbjct: 47 QAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102
>sp|C3MYY9|RL7A_SULIM 50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl7ae PE=3 SV=1
Length = 127
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L VIA ++ P +++ H+P+LC+E IPY+YV+SK+ L A + T +L
Sbjct: 47 QAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102
>sp|C3MJN1|RL7A_SULIL 50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rpl7ae PE=3 SV=1
Length = 127
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L VIA ++ P +++ H+P+LC+E IPY+YV+SK+ L A + T +L
Sbjct: 47 QAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102
>sp|C4KJ77|RL7A_SULIK 50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rpl7ae PE=3 SV=1
Length = 127
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L VIA ++ P +++ H+P+LC+E IPY+YV+SK+ L A + T +L
Sbjct: 47 QAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102
>sp|C3N038|RL7A_SULIA 50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl7ae PE=3 SV=1
Length = 127
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L VIA ++ P +++ H+P+LC+E IPY+YV+SK+ L A + T +L
Sbjct: 47 QAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102
>sp|O74690|SNU13_SCHPO 13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=snu13 PE=3 SV=1
Length = 125
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 32 VIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELG 91
V+A + PI+++ H+P+LCE+ ++PY++V SK L A RP + T L
Sbjct: 52 VMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLP 111
Query: 92 QEEQDKLKADYTLV 105
Q + KL + L+
Sbjct: 112 QIQAIKLAIEKLLI 125
>sp|P0CQ52|SNU13_CRYNJ 13 kDa ribonucleoprotein-associated protein OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=SNU13 PE=3 SV=1
Length = 127
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 87
C V+ ++ PI+++ H+P+LCE+ ++PY+++ SK L A RP V T +
Sbjct: 50 CEFIVMTADVEPIEIVLHLPLLCEDKNVPYVFLPSKTALGRACGVSRPVIAASVTTNEAR 109
>sp|P0CQ53|SNU13_CRYNB 13 kDa ribonucleoprotein-associated protein OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=SNU13 PE=3 SV=1
Length = 127
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 87
C V+ ++ PI+++ H+P+LCE+ ++PY+++ SK L A RP V T +
Sbjct: 50 CEFIVMTADVEPIEIVLHLPLLCEDKNVPYVFLPSKTALGRACGVSRPVIAASVTTNEAR 109
>sp|Q971C9|RL7A_SULTO 50S ribosomal protein L7Ae OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=rpl7ae PE=3
SV=1
Length = 126
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 69
+ +L VIA ++ P +++ H+P+LCEE IPY+YV SK+ L A
Sbjct: 47 QAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVPSKKALGEA 89
>sp|P55858|RL7A_SULSO 50S ribosomal protein L7Ae OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl7ae PE=1 SV=2
Length = 127
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+ +L +IA ++ P +++ H+P+LC+E IPY+YV+SK+ L A + T +L
Sbjct: 47 QAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102
>sp|Q2NGM2|RL7A_METST 50S ribosomal protein L7Ae OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl7ae PE=3 SV=1
Length = 123
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 30 LCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89
L VIA +I P +++ H+PIL EE +IPY+Y+ +KE+L A T ++ GE
Sbjct: 50 LAVIAEDIEPAEIVAHLPILAEEKEIPYVYLPTKEELGEAAGLNVGTASACII---DAGE 106
Query: 90 LGQEEQDKLKADYTLVVEDVKEL 112
GQE D+ +VE V EL
Sbjct: 107 -GQELVDE-------IVEKVAEL 121
>sp|Q54ST0|NH2L1_DICDI NHP2-like protein 1 homolog OS=Dictyostelium discoideum
GN=DDB_G0282243 PE=3 SV=1
Length = 129
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 32 VIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRP--TCCVLV 81
V+A + P++++ H+P+LCE+ +IPY++V+SK +L A RP C V V
Sbjct: 55 VLAADAEPLEILLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTV 106
>sp|Q6KZI7|RL7A_PICTO 50S ribosomal protein L7Ae OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rpl7ae
PE=3 SV=1
Length = 127
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 67
E +L VIA ++SP +V+ ++P LCEE +PY+YV K DL
Sbjct: 45 ESKLVVIAEDVSPAEVVYYLPTLCEERKVPYVYVKKKSDLG 85
>sp|Q6P8E9|NH2L1_XENTR NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1
Length = 128
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 32 VIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 84
V+A + P+++I H+P+LCE+ ++PY++V SK+ L A RP V K
Sbjct: 55 VMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIK 107
>sp|A8A912|RL7A_IGNH4 50S ribosomal protein L7Ae OS=Ignicoccus hospitalis (strain KIN4/I
/ DSM 18386 / JCM 14125) GN=rpl7ae PE=3 SV=1
Length = 128
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 87
+L +IA ++ P +++ H+P+LCEE IPY+YV SK+ L A + ++
Sbjct: 49 AKLVLIAEDVDPPEIVAHLPLLCEEKKIPYVYVPSKKKLGEAAGIEVQAAAAAIIDPGAA 108
Query: 88 GELGQE-----EQDKLKA 100
+L +E EQ K KA
Sbjct: 109 KDLVEEIIKEVEQIKAKA 126
>sp|Q8U160|RL7A_PYRFU 50S ribosomal protein L7Ae OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl7ae PE=1 SV=2
Length = 123
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 67
+ +L +IA ++ P +++ H+P LCEE +IPYIYV SK++L
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 87
>sp|Q9YAX7|RL7A_AERPE 50S ribosomal protein L7Ae OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl7ae
PE=1 SV=1
Length = 127
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82
+L VIA ++ P +++ H+P+LC+E IPY+YV SK+ L A + V ++
Sbjct: 48 AKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAII 102
>sp|P62009|RL7A_PYRHO 50S ribosomal protein L7Ae OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl7ae PE=1 SV=1
Length = 123
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 67
+ +L +IA ++ P +++ H+P LCEE +IPYIYV SK++L
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 87
>sp|P62008|RL7A_PYRAB 50S ribosomal protein L7Ae OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl7ae PE=1 SV=1
Length = 123
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 67
+ +L +IA ++ P +++ H+P LCEE +IPYIYV SK++L
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELG 87
>sp|P55770|NH2L1_RAT NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4
Length = 128
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 32 VIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRP 75
V+A + P+++I H+P+LCE+ ++PY++V SK+ L A RP
Sbjct: 55 VMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRP 98
>sp|Q9D0T1|NH2L1_MOUSE NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4
Length = 128
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 32 VIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRP 75
V+A + P+++I H+P+LCE+ ++PY++V SK+ L A RP
Sbjct: 55 VMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRP 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,568,562
Number of Sequences: 539616
Number of extensions: 1713273
Number of successful extensions: 3823
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3714
Number of HSP's gapped (non-prelim): 116
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)