Query 033552
Match_columns 117
No_of_seqs 112 out of 750
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbw_A H/ACA ribonucleoprotein 99.9 2.7E-28 9.1E-33 173.1 8.4 103 10-112 19-121 (121)
2 3o85_A Ribosomal protein L7AE; 99.9 4.4E-24 1.5E-28 151.9 8.7 91 11-112 31-121 (122)
3 2ale_A SNU13, NHP2/L7AE family 99.9 5.1E-24 1.7E-28 154.0 7.6 95 11-114 32-126 (134)
4 2jnb_A NHP2-like protein 1; sp 99.9 2.5E-24 8.7E-29 157.6 5.4 94 10-112 49-142 (144)
5 1vq8_F 50S ribosomal protein L 99.9 1.1E-23 3.8E-28 148.6 8.3 92 10-112 28-119 (120)
6 2fc3_A 50S ribosomal protein L 99.9 1.1E-23 3.9E-28 149.4 7.5 93 10-113 27-119 (124)
7 1rlg_A 50S ribosomal protein L 99.9 1.4E-23 4.9E-28 147.8 7.1 92 10-112 26-117 (119)
8 2aif_A Ribosomal protein L7A; 99.9 1.2E-23 4.1E-28 151.8 6.7 94 10-112 40-133 (135)
9 1xbi_A 50S ribosomal protein L 99.9 1.2E-22 4.2E-27 143.7 9.3 77 10-86 28-104 (120)
10 3v7e_A Ribosome-associated pro 99.9 3.1E-23 1.1E-27 138.2 5.2 71 11-82 11-81 (82)
11 3u5e_c L32, RP73, YL38, 60S ri 99.8 8.2E-22 2.8E-26 136.5 4.9 79 10-89 21-100 (105)
12 3jyw_G 60S ribosomal protein L 99.8 3.1E-22 1.1E-26 141.5 2.8 70 13-83 27-96 (113)
13 3on1_A BH2414 protein; structu 99.8 9.7E-22 3.3E-26 134.9 4.7 75 10-86 17-91 (101)
14 4a18_G RPL30; ribosome, eukary 99.8 7.7E-22 2.6E-26 136.3 4.1 78 11-89 22-100 (104)
15 3iz5_f 60S ribosomal protein L 99.8 1.1E-21 3.6E-26 138.1 4.5 78 11-89 26-104 (112)
16 3j21_Z 50S ribosomal protein L 99.8 2.3E-21 8E-26 132.5 4.8 78 11-89 15-93 (99)
17 3v7q_A Probable ribosomal prot 99.8 3.6E-21 1.2E-25 132.3 4.0 74 11-86 19-92 (101)
18 1w41_A 50S ribosomal protein L 99.8 1E-20 3.5E-25 129.6 6.2 77 11-88 16-93 (101)
19 2xzm_U Ribosomal protein L7AE 99.8 1.5E-20 5.1E-25 134.6 6.7 78 9-86 22-110 (126)
20 3cpq_A 50S ribosomal protein L 99.8 1.8E-20 6E-25 130.6 6.4 77 11-88 21-98 (110)
21 2zkr_f 60S ribosomal protein L 99.8 9.9E-21 3.4E-25 150.3 5.4 95 12-107 136-235 (266)
22 4a17_F RPL7A, 60S ribosomal pr 99.8 1.2E-19 4.1E-24 143.3 8.1 86 14-110 127-212 (255)
23 3u5c_M 40S ribosomal protein S 99.8 3.4E-20 1.2E-24 135.8 4.6 78 9-86 38-128 (143)
24 3izc_H 60S ribosomal protein R 99.8 2E-19 6.7E-24 142.2 7.8 72 14-86 134-205 (256)
25 2kg4_A Growth arrest and DNA-d 99.8 1.8E-18 6.2E-23 129.3 7.8 96 9-105 33-150 (165)
26 3vi6_A 60S ribosomal protein L 99.7 9E-19 3.1E-23 125.1 5.5 78 11-89 27-105 (125)
27 3iz5_H 60S ribosomal protein L 99.7 2.7E-18 9.3E-23 135.5 7.8 69 14-83 130-198 (258)
28 3cg6_A Growth arrest and DNA-d 98.9 3E-09 1E-13 78.0 6.0 95 9-104 23-131 (146)
29 3ffm_A Growth arrest and DNA-d 98.6 8.6E-08 3E-12 71.5 7.7 78 9-86 44-135 (167)
30 3ir9_A Peptide chain release f 93.2 0.12 4.1E-06 37.7 4.7 60 11-70 46-149 (166)
31 3nkl_A UDP-D-quinovosamine 4-d 89.0 0.34 1.2E-05 32.4 3.3 59 9-67 47-105 (141)
32 1gz0_A Hypothetical tRNA/RRNA 88.1 0.83 2.9E-05 34.9 5.3 78 5-84 7-86 (253)
33 1x52_A Pelota homolog, CGI-17; 86.4 0.44 1.5E-05 33.1 2.6 59 11-70 38-103 (124)
34 3nk6_A 23S rRNA methyltransfer 86.3 1.2 4.3E-05 34.5 5.5 73 9-85 33-106 (277)
35 3agk_A Peptide chain release f 83.7 0.7 2.4E-05 37.0 3.0 55 11-68 299-353 (373)
36 2ohw_A YUEI protein; structura 83.0 3.3 0.00011 29.2 6.0 43 19-62 55-97 (133)
37 2qi2_A Pelota, cell division p 82.1 0.38 1.3E-05 38.7 0.9 59 11-70 265-324 (347)
38 1dt9_A ERF1, protein (eukaryot 81.6 1.4 4.9E-05 36.0 4.2 59 11-69 300-401 (437)
39 3e20_C Eukaryotic peptide chai 80.9 2.2 7.5E-05 35.3 5.1 59 12-70 306-409 (441)
40 1vmd_A MGS, methylglyoxal synt 80.8 1.2 4E-05 33.2 3.1 46 15-61 86-136 (178)
41 1b93_A Protein (methylglyoxal 80.6 1 3.6E-05 32.5 2.7 46 15-60 70-119 (152)
42 2xw6_A MGS, methylglyoxal synt 79.6 1.1 3.7E-05 31.7 2.5 46 15-61 62-112 (134)
43 3j15_A Protein pelota; ribosom 76.0 0.53 1.8E-05 37.9 -0.1 60 11-70 280-342 (357)
44 3oby_A Protein pelota homolog; 74.7 0.8 2.7E-05 37.0 0.7 61 10-70 264-328 (352)
45 1ipa_A RRMH, RNA 2'-O-ribose m 74.0 4.9 0.00017 30.9 5.0 73 11-85 29-103 (274)
46 3obw_A Protein pelota homolog; 73.3 1.8 6E-05 35.1 2.4 60 11-70 285-349 (364)
47 2yvq_A Carbamoyl-phosphate syn 72.8 2.5 8.7E-05 29.4 2.9 43 17-59 86-130 (143)
48 2vgn_A DOM34; translation term 72.4 3 0.0001 33.7 3.6 60 11-70 297-362 (386)
49 3agj_B Protein pelota homolog; 72.1 1.4 4.8E-05 35.3 1.5 60 11-70 272-337 (358)
50 1jdq_A TM006 protein, hypothet 69.1 2.9 9.9E-05 27.7 2.3 40 19-61 43-84 (98)
51 1je3_A EC005, hypothetical 8.6 67.0 3.4 0.00011 27.4 2.3 40 17-60 45-84 (97)
52 2a4v_A Peroxiredoxin DOT5; yea 67.0 12 0.00041 24.8 5.3 78 29-112 70-156 (159)
53 3mca_B Protein DOM34, elongati 61.8 5.2 0.00018 32.5 3.0 73 11-85 291-369 (390)
54 3dnf_A ISPH, LYTB, 4-hydroxy-3 61.3 22 0.00075 28.2 6.4 64 21-88 204-267 (297)
55 3lvj_C Sulfurtransferase TUSA; 60.0 5 0.00017 25.3 2.1 41 16-60 27-67 (82)
56 1knx_A Probable HPR(Ser) kinas 59.3 16 0.00055 28.9 5.3 41 18-61 74-114 (312)
57 2kyr_A Fructose-like phosphotr 57.8 7.9 0.00027 26.5 2.9 48 14-68 47-94 (111)
58 2ioj_A Hypothetical protein AF 57.2 9.1 0.00031 25.9 3.2 55 10-67 54-112 (139)
59 3fw2_A Thiol-disulfide oxidore 55.9 27 0.00091 22.6 5.3 50 28-81 70-123 (150)
60 3gkn_A Bacterioferritin comigr 53.2 6.3 0.00021 26.2 1.8 50 20-74 62-112 (163)
61 3dfz_A SIRC, precorrin-2 dehyd 53.2 8 0.00027 29.0 2.5 57 28-88 92-151 (223)
62 3szu_A ISPH, 4-hydroxy-3-methy 53.0 20 0.00067 28.9 4.9 63 21-88 220-283 (328)
63 2prs_A High-affinity zinc upta 51.9 27 0.00094 26.3 5.4 72 36-111 206-279 (284)
64 1n3y_A Integrin alpha-X; alpha 51.5 43 0.0015 22.7 6.0 75 25-110 108-194 (198)
65 1pav_A Hypothetical protein TA 50.2 2.5 8.5E-05 26.3 -0.6 40 16-59 23-62 (78)
66 2ggt_A SCO1 protein homolog, m 46.7 27 0.00094 22.6 4.2 46 27-73 61-110 (164)
67 4gqc_A Thiol peroxidase, perox 44.4 71 0.0024 21.6 7.8 53 15-72 55-108 (164)
68 2l5o_A Putative thioredoxin; s 44.0 48 0.0017 21.1 5.1 50 28-81 62-113 (153)
69 3hz7_A Uncharacterized protein 43.0 6.8 0.00023 25.2 0.6 42 16-61 18-60 (87)
70 2m1z_A LMO0427 protein; homolo 42.6 19 0.00064 24.3 2.8 45 14-67 44-90 (106)
71 2r48_A Phosphotransferase syst 41.6 16 0.00054 24.7 2.3 47 14-68 44-90 (106)
72 3fkf_A Thiol-disulfide oxidore 41.4 50 0.0017 20.7 4.7 42 28-73 68-113 (148)
73 1uf3_A Hypothetical protein TT 38.7 17 0.00058 25.0 2.2 45 18-62 23-71 (228)
74 3hcz_A Possible thiol-disulfid 38.4 52 0.0018 20.6 4.5 42 28-73 65-110 (148)
75 2vpu_A TET3, 354AA long hypoth 38.4 71 0.0024 25.1 6.1 48 35-83 265-318 (354)
76 3cwq_A Para family chromosome 38.3 36 0.0012 24.0 4.0 92 15-113 107-203 (209)
77 3ib7_A ICC protein; metallopho 38.3 16 0.00054 26.9 2.1 51 15-65 52-111 (330)
78 2r4q_A Phosphotransferase syst 38.2 16 0.00054 24.7 1.9 47 14-68 44-90 (106)
79 3fcs_B Integrin beta-3; beta p 38.1 44 0.0015 29.1 5.1 75 24-107 239-353 (690)
80 1kyq_A Met8P, siroheme biosynt 37.7 16 0.00054 28.2 2.1 61 27-91 106-174 (274)
81 1x7o_A Avirb, rRNA methyltrans 37.4 73 0.0025 24.4 5.9 71 11-85 41-113 (287)
82 3kh7_A Thiol:disulfide interch 37.1 42 0.0014 22.7 4.0 58 20-81 80-139 (176)
83 3qq5_A Small GTP-binding prote 37.0 14 0.00049 30.0 1.8 48 19-68 107-154 (423)
84 2gm2_A Conserved hypothetical 36.9 42 0.0014 23.1 4.0 68 19-86 56-126 (132)
85 3kl9_A PEPA, glutamyl aminopep 36.6 85 0.0029 24.7 6.3 55 29-83 254-315 (355)
86 2x7j_A 2-succinyl-5-enolpyruvy 36.5 93 0.0032 25.8 6.8 28 45-72 537-564 (604)
87 2wfc_A Peroxiredoxin 5, PRDX5; 36.4 52 0.0018 22.4 4.5 50 19-73 58-111 (167)
88 1pjq_A CYSG, siroheme synthase 35.7 19 0.00065 29.3 2.3 58 28-88 73-133 (457)
89 1toa_A Tromp-1, protein (perip 35.1 86 0.003 24.1 6.0 70 36-111 229-309 (313)
90 3bzy_B ESCU; auto cleavage pro 34.6 15 0.00052 23.7 1.3 34 32-70 20-53 (83)
91 3keo_A Redox-sensing transcrip 34.5 48 0.0016 24.6 4.2 55 9-66 130-184 (212)
92 1ytl_A Acetyl-COA decarboxylas 34.3 26 0.00088 25.2 2.6 49 11-61 19-68 (174)
93 3mfq_A TROA, high-affinity zin 33.9 14 0.00049 28.1 1.3 24 37-61 196-219 (282)
94 2wji_A Ferrous iron transport 33.6 21 0.00071 23.6 1.9 43 27-69 81-123 (165)
95 2dyk_A GTP-binding protein; GT 33.3 17 0.00057 23.4 1.4 41 28-68 80-122 (161)
96 2fvt_A Conserved hypothetical 33.0 84 0.0029 21.7 5.1 67 19-85 57-128 (135)
97 3tsm_A IGPS, indole-3-glycerol 32.3 74 0.0025 24.4 5.1 63 18-83 134-197 (272)
98 1v7p_C Integrin alpha-2; snake 32.1 82 0.0028 21.6 5.0 74 26-110 107-196 (200)
99 3qf7_D MRE11; ABC-ATPase, ATPa 31.1 32 0.0011 20.2 2.1 21 93-113 22-42 (50)
100 3gi1_A LBP, laminin-binding pr 30.8 39 0.0013 25.7 3.3 66 36-110 211-282 (286)
101 3tb6_A Arabinose metabolism tr 30.7 60 0.0021 22.9 4.1 43 20-62 64-107 (298)
102 4a29_A Engineered retro-aldol 30.0 56 0.0019 25.3 4.1 65 15-82 115-180 (258)
103 3cx3_A Lipoprotein; zinc-bindi 30.0 51 0.0018 24.8 3.8 66 36-110 209-280 (284)
104 3pqc_A Probable GTP-binding pr 29.8 34 0.0012 22.6 2.5 39 28-66 105-145 (195)
105 3vi3_B Integrin beta-1; beta p 29.3 76 0.0026 26.5 5.0 58 43-109 299-362 (454)
106 3ujp_A Mn transporter subunit; 28.9 88 0.003 24.1 5.1 73 36-111 222-297 (307)
107 1d2f_A MALY protein; aminotran 28.4 54 0.0018 24.5 3.7 39 21-59 156-200 (390)
108 3hh1_A Tetrapyrrole methylase 28.4 72 0.0025 20.7 3.9 41 20-61 73-115 (117)
109 3drn_A Peroxiredoxin, bacterio 28.3 91 0.0031 20.4 4.5 49 20-73 56-105 (161)
110 1y8q_A Ubiquitin-like 1 activa 27.8 26 0.00089 27.5 1.8 40 27-68 125-164 (346)
111 3av3_A Phosphoribosylglycinami 27.7 69 0.0024 23.4 4.1 42 17-62 18-61 (212)
112 1xvl_A Mn transporter, MNTC pr 27.7 74 0.0025 24.7 4.4 69 36-111 236-311 (321)
113 3md9_A Hemin-binding periplasm 27.2 99 0.0034 22.0 4.8 60 10-73 40-111 (255)
114 1mf7_A Integrin alpha M; cell 26.8 84 0.0029 21.3 4.2 74 26-110 105-190 (194)
115 2yv5_A YJEQ protein; hydrolase 26.8 43 0.0015 25.4 2.9 39 28-66 80-122 (302)
116 2yvt_A Hypothetical protein AQ 26.6 41 0.0014 23.8 2.6 24 16-39 21-44 (260)
117 2etv_A Iron(III) ABC transport 26.6 2.1E+02 0.0071 21.6 7.1 61 8-73 72-151 (346)
118 3p7x_A Probable thiol peroxida 26.5 16 0.00056 24.5 0.4 42 27-73 77-121 (166)
119 3grc_A Sensor protein, kinase; 26.4 1.2E+02 0.004 18.7 6.5 53 17-69 40-95 (140)
120 3h5n_A MCCB protein; ubiquitin 26.3 65 0.0022 25.2 3.9 35 27-62 208-242 (353)
121 3psh_A Protein HI_1472; substr 26.2 2E+02 0.0068 21.2 6.7 49 9-62 64-114 (326)
122 3vus_A Poly-beta-1,6-N-acetyl- 26.2 34 0.0012 25.7 2.2 53 10-62 44-99 (268)
123 2nxf_A Putative dimetal phosph 25.9 40 0.0014 24.2 2.5 50 17-66 41-99 (322)
124 2vt1_B Surface presentation of 25.7 19 0.00065 23.8 0.6 35 32-71 20-54 (93)
125 2rli_A SCO2 protein homolog, m 25.7 1.1E+02 0.0038 19.7 4.6 47 26-73 63-113 (171)
126 3av0_A DNA double-strand break 25.5 40 0.0014 26.3 2.5 48 17-65 50-106 (386)
127 3m9w_A D-xylose-binding peripl 25.3 81 0.0028 22.7 4.1 40 20-62 51-91 (313)
128 1t5o_A EIF2BD, translation ini 25.3 44 0.0015 26.7 2.8 40 22-61 220-265 (351)
129 3d03_A Phosphohydrolase; glyce 25.1 55 0.0019 23.1 3.0 47 16-62 28-79 (274)
130 1t9h_A YLOQ, probable GTPase E 24.8 33 0.0011 26.6 1.9 25 42-66 105-129 (307)
131 3hww_A 2-succinyl-5-enolpyruvy 24.7 1.1E+02 0.0036 25.1 5.1 26 45-70 496-521 (556)
132 3t1o_A Gliding protein MGLA; G 24.7 20 0.00069 23.8 0.6 40 28-67 98-148 (198)
133 3l6u_A ABC-type sugar transpor 24.6 1E+02 0.0036 21.7 4.5 41 19-62 56-97 (293)
134 1ko7_A HPR kinase/phosphatase; 24.6 82 0.0028 24.7 4.2 41 18-61 71-111 (314)
135 1ivn_A Thioesterase I; hydrola 24.2 44 0.0015 22.4 2.3 46 16-61 88-140 (190)
136 4dcu_A GTP-binding protein ENG 24.2 44 0.0015 26.7 2.6 49 19-67 271-319 (456)
137 2o1e_A YCDH; alpha-beta protei 24.0 36 0.0012 26.3 2.0 68 36-111 222-298 (312)
138 1xvw_A Hypothetical protein RV 24.0 71 0.0024 20.6 3.3 42 27-73 70-114 (160)
139 3b1s_B Flagellar biosynthetic 29.6 17 0.00057 23.8 0.0 29 31-61 19-47 (87)
140 1tp9_A Peroxiredoxin, PRX D (t 23.8 1.4E+02 0.0048 19.7 4.8 49 20-73 63-115 (162)
141 3uhf_A Glutamate racemase; str 23.6 20 0.00069 27.6 0.5 49 18-69 77-127 (274)
142 2jgn_A DBX, DDX3, ATP-dependen 23.4 1.3E+02 0.0044 20.7 4.7 21 18-39 87-107 (185)
143 3g0t_A Putative aminotransfera 23.2 65 0.0022 24.4 3.3 41 21-61 176-222 (437)
144 3i8s_A Ferrous iron transport 23.2 31 0.001 25.6 1.4 44 26-69 84-127 (274)
145 1wn2_A Peptidyl-tRNA hydrolase 23.0 86 0.0029 21.2 3.6 55 22-83 50-105 (121)
146 1tjy_A Sugar transport protein 23.0 67 0.0023 23.5 3.3 40 20-62 53-93 (316)
147 2glf_A Probable M18-family ami 23.0 97 0.0033 25.5 4.5 71 36-107 367-448 (450)
148 1pt6_A Integrin alpha-1; cell 22.9 94 0.0032 21.5 3.9 78 25-113 107-200 (213)
149 2yvk_A Methylthioribose-1-phos 22.7 48 0.0016 26.8 2.5 40 22-61 247-293 (374)
150 4gl2_A Interferon-induced heli 22.7 9.7 0.00033 31.6 -1.6 21 18-39 455-475 (699)
151 1s3l_A Hypothetical protein MJ 22.6 44 0.0015 23.5 2.1 41 17-61 42-82 (190)
152 3cf4_G Acetyl-COA decarboxylas 22.6 49 0.0017 23.0 2.3 46 16-61 24-69 (170)
153 3zy2_A Putative GDP-fucose pro 22.5 37 0.0013 27.7 1.8 41 18-60 270-310 (362)
154 1c7n_A Cystalysin; transferase 22.5 58 0.002 24.3 2.9 39 21-59 158-202 (399)
155 8abp_A L-arabinose-binding pro 22.1 79 0.0027 22.5 3.4 40 20-62 50-90 (306)
156 3ecd_A Serine hydroxymethyltra 22.1 58 0.002 24.4 2.8 39 22-61 167-207 (425)
157 1zma_A Bacterocin transport ac 22.0 78 0.0027 19.4 3.0 70 8-77 11-91 (118)
158 1pq4_A Periplasmic binding pro 22.0 53 0.0018 24.9 2.6 61 35-110 219-285 (291)
159 3c01_E Surface presentation of 21.7 21 0.00071 23.8 0.1 21 41-61 27-47 (98)
160 3gbx_A Serine hydroxymethyltra 21.7 66 0.0023 24.0 3.0 40 21-61 163-204 (420)
161 4dhe_A Probable GTP-binding pr 21.6 57 0.002 22.3 2.5 39 28-66 116-156 (223)
162 3ist_A Glutamate racemase; str 21.5 20 0.00068 27.4 0.0 40 18-60 58-97 (269)
163 3ixr_A Bacterioferritin comigr 21.2 38 0.0013 23.1 1.5 50 19-73 77-127 (179)
164 2ab1_A Hypothetical protein; H 21.1 1.9E+02 0.0066 19.3 5.1 63 19-81 53-119 (122)
165 1svi_A GTP-binding protein YSX 21.0 62 0.0021 21.4 2.5 38 29-66 107-146 (195)
166 3byq_A Uncharacterized protein 20.9 51 0.0018 24.7 2.2 45 60-105 15-60 (193)
167 2np0_B Synaptotagmin-2; botuli 20.8 82 0.0028 15.8 2.4 19 97-115 7-25 (26)
168 3hp4_A GDSL-esterase; psychrot 20.7 41 0.0014 22.2 1.5 47 16-62 92-145 (185)
169 3vat_A Dnpep, aspartyl aminope 20.7 61 0.0021 27.3 2.9 73 41-115 407-492 (496)
170 3s81_A Putative aspartate race 20.6 38 0.0013 25.8 1.4 37 20-60 92-128 (268)
171 3jy6_A Transcriptional regulat 20.6 1.3E+02 0.0043 21.2 4.2 38 19-62 55-93 (276)
172 2wjg_A FEOB, ferrous iron tran 20.6 35 0.0012 22.6 1.1 43 27-69 85-127 (188)
173 3rot_A ABC sugar transporter, 20.5 90 0.0031 22.3 3.5 42 19-63 53-95 (297)
174 1t9k_A Probable methylthioribo 20.4 63 0.0022 25.7 2.8 40 22-61 222-268 (347)
175 1zud_1 Adenylyltransferase THI 20.4 60 0.002 24.0 2.5 33 28-62 119-151 (251)
176 1xty_A PTH, peptidyl-tRNA hydr 20.4 87 0.003 21.0 3.1 55 22-83 49-104 (120)
177 3ksm_A ABC-type sugar transpor 20.3 1E+02 0.0035 21.4 3.6 37 23-62 55-92 (276)
178 2yc2_C IFT27, small RAB-relate 20.0 43 0.0015 22.4 1.5 41 28-68 97-146 (208)
179 1t5i_A C_terminal domain of A 20.0 13 0.00046 25.5 -1.1 21 18-39 72-92 (172)
180 3a1s_A Iron(II) transport prot 20.0 98 0.0034 22.6 3.6 50 22-71 78-127 (258)
No 1
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.95 E-value=2.7e-28 Score=173.08 Aligned_cols=103 Identities=41% Similarity=0.666 Sum_probs=95.8
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
.+-+.|.++++++|++|+++|||||+|++|.+++++|+.+|++++|||++++||++||+|||+++++++++|++.+++..
T Consensus 19 gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~I~d~g~a~~ 98 (121)
T 2lbw_A 19 KNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKK 98 (121)
T ss_dssp TCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEEECCSCTTGG
T ss_pred CCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEEEEcCcchHH
Confidence 45578999999999999999999999999988899999999999999999999999999999988899999999888776
Q ss_pred cchHHHHhhHHHHHHHHHHHHhh
Q 033552 90 LGQEEQDKLKADYTLVVEDVKEL 112 (117)
Q Consensus 90 ~~~~e~~~~~~~~~e~~~~~~~l 112 (117)
...+..+.|++.|+|+.++|++|
T Consensus 99 ~~~~~~~~y~~~y~~~~~~~~~~ 121 (121)
T 2lbw_A 99 DGKNKEEEYKESFNEVVKEVQAL 121 (121)
T ss_dssp GCSSTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 66667889999999999999986
No 2
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.90 E-value=4.4e-24 Score=151.87 Aligned_cols=91 Identities=24% Similarity=0.414 Sum_probs=82.5
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCcc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGEL 90 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~~ 90 (117)
+-+.|.++++++|++|++++||||+|++|.+++++++.+|++++|||++++||++||+|||+++++++++|++.+
T Consensus 31 klv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~d~~----- 105 (122)
T 3o85_A 31 AIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRACNVSVPTIVASIGKHD----- 105 (122)
T ss_dssp CEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHHHTTCSSCCSEEEECCCT-----
T ss_pred CEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCCEEEEEEEccc-----
Confidence 456799999999999999999999999998789999999999999999999999999999999999999998722
Q ss_pred chHHHHhhHHHHHHHHHHHHhh
Q 033552 91 GQEEQDKLKADYTLVVEDVKEL 112 (117)
Q Consensus 91 ~~~e~~~~~~~~~e~~~~~~~l 112 (117)
+|++.|+++..++++|
T Consensus 106 ------~~~~~~~~~~~~i~~~ 121 (122)
T 3o85_A 106 ------ALGNVVAEIVGKVEAL 121 (122)
T ss_dssp ------TTHHHHHHHHHHHHTT
T ss_pred ------chHHHHHHHHHHHHhh
Confidence 2777888888888776
No 3
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.90 E-value=5.1e-24 Score=154.00 Aligned_cols=95 Identities=23% Similarity=0.443 Sum_probs=84.0
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCcc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGEL 90 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~~ 90 (117)
+-+.|.+|++++|++|+++|||||+|++|.+++++|+.+|+++||||++++||++||+|||+++++++++|++.+
T Consensus 32 kl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~~----- 106 (134)
T 2ale_A 32 QLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTND----- 106 (134)
T ss_dssp CEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEECCT-----
T ss_pred CcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEEcCC-----
Confidence 457899999999999999999999999997789999999999999999999999999999999887889998622
Q ss_pred chHHHHhhHHHHHHHHHHHHhhhc
Q 033552 91 GQEEQDKLKADYTLVVEDVKELAS 114 (117)
Q Consensus 91 ~~~e~~~~~~~~~e~~~~~~~l~~ 114 (117)
...+.++++++...++.|+.
T Consensus 107 ----~s~~~~l~~~i~~~~~~~~~ 126 (134)
T 2ale_A 107 ----ASAIKTQIYAVKDKIETLLI 126 (134)
T ss_dssp ----TCTTHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHhHH
Confidence 23577788888888887753
No 4
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.90 E-value=2.5e-24 Score=157.56 Aligned_cols=94 Identities=27% Similarity=0.479 Sum_probs=84.8
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
.+-+.|.+|++++|++|+++|||||+|++|.+++++|+.+|+++||||++++||++||+|||+++++++++|++.+.
T Consensus 49 gkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~~~~~--- 125 (144)
T 2jnb_A 49 KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEG--- 125 (144)
T ss_dssp TCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTCSSCCSEEEEECCTT---
T ss_pred CCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCceEEEEEEeCCc---
Confidence 34578999999999999999999999999977899999999999999999999999999999999988899986332
Q ss_pred cchHHHHhhHHHHHHHHHHHHhh
Q 033552 90 LGQEEQDKLKADYTLVVEDVKEL 112 (117)
Q Consensus 90 ~~~~e~~~~~~~~~e~~~~~~~l 112 (117)
.+|.+.|+++.++|++|
T Consensus 126 ------s~i~~~~~~~~~~i~~l 142 (144)
T 2jnb_A 126 ------SQLKQQIQSIQQSIERL 142 (144)
T ss_dssp ------CTTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 35788899999998887
No 5
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.89 E-value=1.1e-23 Score=148.60 Aligned_cols=92 Identities=22% Similarity=0.396 Sum_probs=81.0
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
.+-+.|.++++++|++|++++||+|+|++|.++++||+.+|++++|||++++|+++||+|||+++++++++|++.++.
T Consensus 28 g~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~g~a-- 105 (120)
T 1vq8_F 28 GAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEA-- 105 (120)
T ss_dssp SCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTTCSSCCSEEEESSCSSC--
T ss_pred CCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEecCchH--
Confidence 455889999999999999999999999999878999999999999999999999999999999988999999986553
Q ss_pred cchHHHHhhHHHHHHHHHHHHhh
Q 033552 90 LGQEEQDKLKADYTLVVEDVKEL 112 (117)
Q Consensus 90 ~~~~e~~~~~~~~~e~~~~~~~l 112 (117)
+.+++++.+.+++|
T Consensus 106 ---------~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 106 ---------DADVEDIADKVEEL 119 (120)
T ss_dssp ---------HHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHhc
Confidence 33566666666655
No 6
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.89 E-value=1.1e-23 Score=149.43 Aligned_cols=93 Identities=29% Similarity=0.477 Sum_probs=82.1
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
.+-+.|.++++++|++|++++||+|+|++|.++++||+.+|++++|||++++|+++||+|||+++++++++|++.++
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~vaI~d~g~--- 103 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGD--- 103 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEEECGG---
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEECcch---
Confidence 34588999999999999999999999999987899999999999999999999999999999998899999998544
Q ss_pred cchHHHHhhHHHHHHHHHHHHhhh
Q 033552 90 LGQEEQDKLKADYTLVVEDVKELA 113 (117)
Q Consensus 90 ~~~~e~~~~~~~~~e~~~~~~~l~ 113 (117)
.+..++++.+++++|+
T Consensus 104 --------a~~~~~~l~~~~~~l~ 119 (124)
T 2fc3_A 104 --------AETLVREIVEKVKELR 119 (124)
T ss_dssp --------GHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHhH
Confidence 2446777777777765
No 7
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.89 E-value=1.4e-23 Score=147.84 Aligned_cols=92 Identities=29% Similarity=0.527 Sum_probs=81.0
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
.+-+.|.++++++|++|++++||+|+|++|.++++||+.+|++++|||++++|+++||+|||+++++++++|++.++
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~g~--- 102 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINEGE--- 102 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEECGG---
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEecCch---
Confidence 34588999999999999999999999999987899999999999999999999999999999998899999998544
Q ss_pred cchHHHHhhHHHHHHHHHHHHhh
Q 033552 90 LGQEEQDKLKADYTLVVEDVKEL 112 (117)
Q Consensus 90 ~~~~e~~~~~~~~~e~~~~~~~l 112 (117)
.+..++++.+.+++|
T Consensus 103 --------a~~~~~~l~~~~~~l 117 (119)
T 1rlg_A 103 --------LRKELGSLVEKIKGL 117 (119)
T ss_dssp --------GHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHh
Confidence 234667777777665
No 8
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.89 E-value=1.2e-23 Score=151.79 Aligned_cols=94 Identities=21% Similarity=0.450 Sum_probs=84.0
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
.+-+.|.++++++|++|++++||+|+|++|.+++++|+.+|++++|||++++|+++||+|||+++++++++|++.+
T Consensus 40 gklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~~v~~vaI~d~~---- 115 (135)
T 2aif_A 40 KQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAITSKD---- 115 (135)
T ss_dssp TCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEECCT----
T ss_pred CCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCCcEEEEEEEcCC----
Confidence 3557899999999999999999999999997777999999999999999999999999999999988889998633
Q ss_pred cchHHHHhhHHHHHHHHHHHHhh
Q 033552 90 LGQEEQDKLKADYTLVVEDVKEL 112 (117)
Q Consensus 90 ~~~~e~~~~~~~~~e~~~~~~~l 112 (117)
..+|.++|+++.++|++|
T Consensus 116 -----~s~i~~~~~~~~~~~~~~ 133 (135)
T 2aif_A 116 -----GSSLSSQITELKDQIEQI 133 (135)
T ss_dssp -----TCTTHHHHHHHHHTTCC-
T ss_pred -----cHHHHHHHHHHHHHHHHH
Confidence 246888899999988876
No 9
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.88 E-value=1.2e-22 Score=143.69 Aligned_cols=77 Identities=31% Similarity=0.501 Sum_probs=72.0
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCC
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~ 86 (117)
.+-+.|.++++++|++|++++||||+|++|.+++++|+.+|++++|||++++|+++||+|||+++++++++|++.++
T Consensus 28 gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~g~ 104 (120)
T 1xbi_A 28 QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGD 104 (120)
T ss_dssp SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEECSC
T ss_pred CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCCCEEEEEEeccch
Confidence 34578999999999999999999999999987899999999999999999999999999999998899999998554
No 10
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.88 E-value=3.1e-23 Score=138.21 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=67.8
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEe
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~ 82 (117)
+-+.|.+||+++|++|+++|||||+|++| +++++|+.+|++++|||++++||++||+|||+++++++++|+
T Consensus 11 k~~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 11 SIIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp EEEESHHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEEE
T ss_pred CeeEcHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEe
Confidence 45889999999999999999999999999 789999999999999999999999999999999999998885
No 11
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.84 E-value=8.2e-22 Score=136.46 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=72.9
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEE-EECCHhHHHhhcCCCcceEEEEEeecCCCC
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYI-YVASKEDLANAGATKRPTCCVLVLTKPTKG 88 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i-~v~tK~eLG~A~G~~~~~svv~I~~~~~~~ 88 (117)
.+-+.|.+||+++|++|++++||+|+|++| +.+++++.+|++++|||+ +++|++|||+|||+++++++++|++.++..
T Consensus 21 gk~v~G~~~v~kai~~gkaklVilA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~~~~vaI~D~G~a~ 99 (105)
T 3u5e_c 21 GKYTLGYKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSD 99 (105)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECCSCC
T ss_pred CCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCcccEEEEEEeccchHH
Confidence 356899999999999999999999999998 579999999999999999 799999999999999888889999988865
Q ss_pred c
Q 033552 89 E 89 (117)
Q Consensus 89 ~ 89 (117)
.
T Consensus 100 ~ 100 (105)
T 3u5e_c 100 I 100 (105)
T ss_dssp T
T ss_pred H
Confidence 4
No 12
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.84 E-value=3.1e-22 Score=141.49 Aligned_cols=70 Identities=21% Similarity=0.419 Sum_probs=65.6
Q ss_pred eeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEee
Q 033552 13 CVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLT 83 (117)
Q Consensus 13 ~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~ 83 (117)
..|+++++++|++|+++|||||+|++|++++.||+.+|+++||||++++||++||+|||+++ +++++|++
T Consensus 27 ~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~-~a~vai~d 96 (113)
T 3jyw_G 27 KYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKT-SAVAALTE 96 (113)
T ss_dssp EESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSS-CCSEEEEC
T ss_pred hchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCC-cEEEEEEe
Confidence 46999999999999999999999999988999999999999999999999999999999996 56677776
No 13
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.84 E-value=9.7e-22 Score=134.85 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=68.5
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCC
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~ 86 (117)
.+-+.|.+||+++|++|++++||+|+|++|. .+++|+.+|++++|||++++|++|||+|||++ ++++++|++.++
T Consensus 17 gk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~-~~~~vai~d~g~ 91 (101)
T 3on1_A 17 RQLLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKH-ERVVIGVKDAGF 91 (101)
T ss_dssp TCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHTTSS-CCSEEEECCHHH
T ss_pred CCEeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCc-CeEEEEEECccH
Confidence 3568899999999999999999999999994 79999999999999999999999999999997 677899987444
No 14
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.84 E-value=7.7e-22 Score=136.27 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=72.2
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEE-EECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYI-YVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i-~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
+-+.|.+||+++|++|++++||+|+|++|. ..++++.+|++++|||+ |++|++|||+|||+++++++++|++.+++..
T Consensus 22 klv~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~D~G~a~~ 100 (104)
T 4a18_G 22 KATLGYKSTIKAIRNGTAKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILDAGDSDI 100 (104)
T ss_dssp EEEESHHHHHHHHHHTCCCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECSSCGG
T ss_pred CEeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEeccchHHH
Confidence 458899999999999999999999999994 79999999999999999 6999999999999998888999999887654
No 15
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.84 E-value=1.1e-21 Score=138.08 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=72.7
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE-CCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v-~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
+-+.|.+||+++|++|+++|||||+|++| .++++|+.+|++++|||+++ +|+.|||+|||+.+++++++|++.+++..
T Consensus 26 k~~~G~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~vaI~D~G~a~~ 104 (112)
T 3iz5_f 26 KYTLGYKTVLKTLRSSLGKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDI 104 (112)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCEEEEECCSCCSH
T ss_pred CeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEEEEEeccchHHH
Confidence 45899999999999999999999999998 58999999999999999999 99999999999998888999999887653
No 16
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.83 E-value=2.3e-21 Score=132.51 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=70.9
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE-CCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v-~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
+-+.|.+||+++|++|++++||+|+|+++ +++++|+.+|++++|||+.+ +|++|||+|||+++++++++|++.+++..
T Consensus 15 k~v~G~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~d~g~a~~ 93 (99)
T 3j21_Z 15 KVVLGSNETIRLAKTGGAKLIIVAKNAPK-EIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKI 93 (99)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEECCCCH-HHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEEEEESSCSSCSH
T ss_pred CEeECHHHHHHHHHcCCccEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEEEEEEEccchHHH
Confidence 45889999999999999999999999876 78999999999999997555 99999999999998889999999887653
No 17
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.82 E-value=3.6e-21 Score=132.28 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=67.3
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCC
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~ 86 (117)
+-+.|.+||+++|++|++++||+|+|++|. ..++|+.+|++++|||++++|++|||+|||++ .+++++|++.++
T Consensus 19 k~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~-~~~~~ai~D~g~ 92 (101)
T 3v7q_A 19 KVVSGEDLVIKEIRNARAKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRAVLGRSIGKE-ARVVVAVTDQGF 92 (101)
T ss_dssp CEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHHHHHHHTTSS-CCSEEEECCHHH
T ss_pred hcccchhhhHHHHhcCceeEEEEecccccc-chhhhcccccccCCCeeeechHHHHHhhhCcc-ceEEEEEeccHH
Confidence 457899999999999999999999999995 79999999999999999999999999999998 456789887444
No 18
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.82 E-value=1e-20 Score=129.57 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=69.8
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE-CCHhHHHhhcCCCcceEEEEEeecCCCC
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPTCCVLVLTKPTKG 88 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v-~tK~eLG~A~G~~~~~svv~I~~~~~~~ 88 (117)
+-+.|.++++++|++|++++||+|+|+++ +++++|+.+|++++|||+.+ +|+++||+|||+++++++++|++.+++.
T Consensus 16 kl~~G~~~v~kai~~gka~lViiA~D~~~-~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d~g~a~ 93 (101)
T 1w41_A 16 KIVMGARKSIQYAKMGGAKLIIVARNARP-DIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGASR 93 (101)
T ss_dssp EEEESHHHHHHHHHHTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEECTTCC
T ss_pred CEeECHHHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEecCCHHH
Confidence 44789999999999999999999999765 78999999999999998875 9999999999999777889999877755
No 19
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.82 E-value=1.5e-20 Score=134.60 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=70.2
Q ss_pred CccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCC-----------CcceE
Q 033552 9 HSFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGAT-----------KRPTC 77 (117)
Q Consensus 9 ~~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~-----------~~~~s 77 (117)
|.+-+.|.++++++|++|+++|||||+|++|.+++++|+.+|++++|||++++||++||+|||+ ..+++
T Consensus 22 ~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~~k~d~~g~~rk~v~~s 101 (126)
T 2xzm_U 22 QDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGHFTANAKGEIKKVKGCS 101 (126)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTCCCBCTTCCBSCCCCCC
T ss_pred cCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCccccccCcCceeeEE
Confidence 4566899999999999999999999999998788999999999999999999999999999997 24488
Q ss_pred EEEEeecCC
Q 033552 78 CVLVLTKPT 86 (117)
Q Consensus 78 vv~I~~~~~ 86 (117)
+++|++.+.
T Consensus 102 ~vaI~d~g~ 110 (126)
T 2xzm_U 102 SLAIRKYAP 110 (126)
T ss_dssp EEEESSCCT
T ss_pred EEEEEecCc
Confidence 899987443
No 20
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=1.8e-20 Score=130.55 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=69.8
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE-CCHhHHHhhcCCCcceEEEEEeecCCCC
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPTCCVLVLTKPTKG 88 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v-~tK~eLG~A~G~~~~~svv~I~~~~~~~ 88 (117)
+-+.|.++++++|++|++++||||+|++ .+++++|+.+|++++|||+.+ +|+++||.|||+++++++++|++.++..
T Consensus 21 kl~~G~~~v~kai~~gka~lViiA~D~~-~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~g~a~ 98 (110)
T 3cpq_A 21 KVILGSKRTIKFVKHGEGKLVVLAGNIP-KDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSN 98 (110)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEECTTCB-HHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEECTTCC
T ss_pred CeeeCHHHHHHHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecCCHHH
Confidence 4478999999999999999999999994 579999999999999998887 9999999999999777789999877644
No 21
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.81 E-value=9.9e-21 Score=150.34 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=70.1
Q ss_pred ceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCC-Cc-
Q 033552 12 NCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK-GE- 89 (117)
Q Consensus 12 ~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~-~~- 89 (117)
=+.|.++|+++|++|+++|||||+|++|.+++.+++.+|++++|||++++|+++||+|||+++ +++++|++.+.. ..
T Consensus 136 L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~-~s~VAItD~G~eD~~a 214 (266)
T 2zkr_f 136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKT-CTTVAFTQVNSEDKGA 214 (266)
T ss_dssp CCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSSC-CSEEEETTCSSTTTTH
T ss_pred eeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCC-ceEEEEeecCcchHHH
Confidence 367999999999999999999999999999999999999999999999999999999999984 666777765443 21
Q ss_pred ---cchHHHHhhHHHHHHHHH
Q 033552 90 ---LGQEEQDKLKADYTLVVE 107 (117)
Q Consensus 90 ---~~~~e~~~~~~~~~e~~~ 107 (117)
+.+.-.+.|.+.|+|+.+
T Consensus 215 l~klve~ik~~y~d~y~e~~~ 235 (266)
T 2zkr_f 215 LAKLVEAIRTNYNDRYDEIRR 235 (266)
T ss_dssp HHHHHHHHC------------
T ss_pred HHHHHHHHHHhhhhhhhHHHH
Confidence 112234567777887764
No 22
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.79 E-value=1.2e-19 Score=143.26 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=72.6
Q ss_pred eeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCCccchH
Q 033552 14 VGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQE 93 (117)
Q Consensus 14 vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~~~~~ 93 (117)
.|++.++++|++|+++|||||+|++|++++.|||.+|+++||||++++|+++||+|||+++ +++++|++-
T Consensus 127 ~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~~LG~avGrKt-~s~Vaitdv--------- 196 (255)
T 4a17_F 127 YGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKT-ATAVALTEV--------- 196 (255)
T ss_dssp ECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHHHHHHHHTSSC-CSEEEECCC---------
T ss_pred cchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCc-ceEEEeecc---------
Confidence 4999999999999999999999999999999999999999999999999999999999986 456777651
Q ss_pred HHHhhHHHHHHHHHHHH
Q 033552 94 EQDKLKADYTLVVEDVK 110 (117)
Q Consensus 94 e~~~~~~~~~e~~~~~~ 110 (117)
.++++..|+++++.++
T Consensus 197 -~~EDk~al~kLve~ik 212 (255)
T 4a17_F 197 -RNEDKAKLQQFSELFK 212 (255)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHH
Confidence 2234445555555554
No 23
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.79 E-value=3.4e-20 Score=135.83 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=70.5
Q ss_pred CccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhh--hCCCCEEEECCHhHHHhhcCCC-----------cc
Q 033552 9 HSFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCE--ESDIPYIYVASKEDLANAGATK-----------RP 75 (117)
Q Consensus 9 ~~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce--~~~IP~i~v~tK~eLG~A~G~~-----------~~ 75 (117)
|.+-++|++|++|+|++|+++|||||+|++|.+++++|+.+|+ +++|||++++||++||+|||+. .+
T Consensus 38 ~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~a~Gl~k~d~~Gk~rkVv~ 117 (143)
T 3u5c_M 38 HDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVG 117 (143)
T ss_dssp TTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHHHSSCCCCSSSSCCSCCCC
T ss_pred cCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhHHhCcCccccCCCccccce
Confidence 4567899999999999999999999999998789999999999 9999999999999999999964 24
Q ss_pred eEEEEEeecCC
Q 033552 76 TCCVLVLTKPT 86 (117)
Q Consensus 76 ~svv~I~~~~~ 86 (117)
++|++|++-+.
T Consensus 118 ~s~v~I~d~G~ 128 (143)
T 3u5c_M 118 ASVVVVKNWGA 128 (143)
T ss_dssp CSCEEESCCCC
T ss_pred eEEEEEcccch
Confidence 67899987555
No 24
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.78 E-value=2e-19 Score=142.21 Aligned_cols=72 Identities=21% Similarity=0.411 Sum_probs=66.6
Q ss_pred eeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCC
Q 033552 14 VGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 86 (117)
Q Consensus 14 vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~ 86 (117)
-|+++|+++|++|+++|||||+|++|.+++.+|+.+|+++||||++++||++||+|||+++ +++++|++-++
T Consensus 134 ~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk~-~s~VAItD~g~ 205 (256)
T 3izc_H 134 YGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKT-SAVAALTEVRA 205 (256)
T ss_dssp ESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSS-CCSEEEESSCC
T ss_pred ccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCC-cEEEEeecCCh
Confidence 4999999999999999999999999999999999999999999999999999999999985 66778877443
No 25
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=129.28 Aligned_cols=96 Identities=22% Similarity=0.205 Sum_probs=75.9
Q ss_pred Cccceeeeecchhhh--hcCCccEEEEeCCCC-CcchheeHH-----HHhhhCCCCEEEECCHhHHHhhcCC--------
Q 033552 9 HSFNCVGVVNDPLPL--LFHECRLCVIAGNIS-PIDVITHVP-----ILCEESDIPYIYVASKEDLANAGAT-------- 72 (117)
Q Consensus 9 ~~~~~vG~kqt~kaL--~kg~~~LViLA~Das-p~~i~~~i~-----~lce~~~IP~i~v~tK~eLG~A~G~-------- 72 (117)
|..-++|++|+.|+| .+|.+.+||||+|++ |..+..|++ .+|++++|||++|+||++||+|||+
T Consensus 33 ~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~Gi~~~~~~~~ 112 (165)
T 2kg4_A 33 QRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAA 112 (165)
T ss_dssp HTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHTTTCSSCC
T ss_pred cCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHHCCcccccccc
Confidence 456799999999999 999999999999997 666656655 9999999999999999999999996
Q ss_pred ------CcceEEEEEeecCCCCccchHHHHhhHHHHHHH
Q 033552 73 ------KRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 105 (117)
Q Consensus 73 ------~~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e~ 105 (117)
.|+++|++|++.+.... ..+..+.+.+++++.
T Consensus 113 ~d~~g~~r~~scv~V~~~g~~s~-~~~a~~~l~~~~~e~ 150 (165)
T 2kg4_A 113 SEGAEQPPDLHCVLVTNPHSSQW-KDPALSQLICFCRES 150 (165)
T ss_dssp CCSSCCCSCSCEEEEECCSSCCC-CCHHHHHHHHHHHHH
T ss_pred cccCCCcccceEEEEeccccccc-cchHHHHHHHHHHHh
Confidence 26688999987554321 113345555555554
No 26
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.75 E-value=9e-19 Score=125.06 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=70.2
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEE-EECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYI-YVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i-~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
+-+.|.+||+++|++|+++|||||+|++| +++.+++.+|...++|+. +++|++|||+|||+++++++++|++.++...
T Consensus 27 klv~G~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~v~~vaI~D~G~a~~ 105 (125)
T 3vi6_A 27 KYVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDI 105 (125)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSSCCCEEEEEECTTCCC
T ss_pred CeeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCcccEEEEEEeCchhHHH
Confidence 45889999999999999999999999999 689999999888877754 6999999999999998888899999888764
No 27
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.74 E-value=2.7e-18 Score=135.54 Aligned_cols=69 Identities=25% Similarity=0.469 Sum_probs=63.8
Q ss_pred eeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEee
Q 033552 14 VGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLT 83 (117)
Q Consensus 14 vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~ 83 (117)
-|++.+.++|++++++|||||+|++|.+++.|||.||+++||||++|.+|++||+++|+++.++ +++++
T Consensus 130 ~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~iVk~KarLG~~vgrKtct~-Va~t~ 198 (258)
T 3iz5_H 130 YGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASV-LCLTT 198 (258)
T ss_dssp ESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEEEESCHHHHHHHTTCSSCCS-EEEEE
T ss_pred cccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeEEECCHHHHHHHhCCccceE-EEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999997554 55555
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=98.87 E-value=3e-09 Score=78.03 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=69.2
Q ss_pred CccceeeeecchhhhhcC--CccEEEEeCCCCC------cchheeHHHHhhhCCCCEEEECCHhHHHhhcCC------Cc
Q 033552 9 HSFNCVGVVNDPLPLLFH--ECRLCVIAGNISP------IDVITHVPILCEESDIPYIYVASKEDLANAGAT------KR 74 (117)
Q Consensus 9 ~~~~~vG~kqt~kaL~kg--~~~LViLA~Dasp------~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~------~~ 74 (117)
|..=++|+.-+.|+|.+. .+.|+|||.|++. ...++-|..+|.+++||++-|++.+.||+++|+ .|
T Consensus 23 ~dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkVdd~kkLgew~Gk~d~~g~pr 102 (146)
T 3cg6_A 23 QGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGSDEEGGAPG 102 (146)
T ss_dssp HTCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHHHHC----------
T ss_pred hCCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEeCchhHHHHHhCCcCCCCCCC
Confidence 445578999999999997 8999999999982 135777889999999999999999999999994 34
Q ss_pred ceEEEEEeecCCCCccchHHHHhhHHHHHH
Q 033552 75 PTCCVLVLTKPTKGELGQEEQDKLKADYTL 104 (117)
Q Consensus 75 ~~svv~I~~~~~~~~~~~~e~~~~~~~~~e 104 (117)
..+|++|++-+...- .....+.+.++++|
T Consensus 103 ~~sCvvV~d~g~e~~-~s~al~~l~~y~~e 131 (146)
T 3cg6_A 103 DLHCILISNPNEDTW-KDPALEKLSLFCEE 131 (146)
T ss_dssp CCSEEEEECCC---C-CCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCcccc-cCHHHHHHHHHHHH
Confidence 577899886443210 11224455555554
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=98.64 E-value=8.6e-08 Score=71.54 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=64.8
Q ss_pred CccceeeeecchhhhhcC--CccEEEEeCCCC-Ccc-----hheeHHHHhhhCCCCEEEECCHhHHHhhcCCC------c
Q 033552 9 HSFNCVGVVNDPLPLLFH--ECRLCVIAGNIS-PID-----VITHVPILCEESDIPYIYVASKEDLANAGATK------R 74 (117)
Q Consensus 9 ~~~~~vG~kqt~kaL~kg--~~~LViLA~Das-p~~-----i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~------~ 74 (117)
|..=++|+.-+.|+|.+. .+.|+|||.|++ +.+ .++-|..+|.+++||++.|.+.+.||.++|+. +
T Consensus 44 ~dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV~d~kkLgew~G~~~~~~k~~ 123 (167)
T 3ffm_A 44 QGCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGAGEEAGAPG 123 (167)
T ss_dssp TTCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTSCCSSSCS
T ss_pred hCCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEeCCcchHHHHhCcCCCCCCCC
Confidence 455678999999999884 899999999986 334 36778899999999999999999999999952 3
Q ss_pred ceEEEEEeecCC
Q 033552 75 PTCCVLVLTKPT 86 (117)
Q Consensus 75 ~~svv~I~~~~~ 86 (117)
..+|++|++-+.
T Consensus 124 ~csCVlVtd~ge 135 (167)
T 3ffm_A 124 DLHCILISNPNE 135 (167)
T ss_dssp CCSEEEEECSSS
T ss_pred ccEEEEECCCCc
Confidence 578899986444
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=93.22 E-value=0.12 Score=37.67 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=50.6
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCc--------------------------------------------chheeH
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPI--------------------------------------------DVITHV 46 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~--------------------------------------------~i~~~i 46 (117)
.-+.|.++|++|+.-|.+..++|..|.... +++..+
T Consensus 46 ~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~L 125 (166)
T 3ir9_A 46 KVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEF 125 (166)
T ss_dssp CEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEHHHHH
T ss_pred cEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHHHHHH
Confidence 458899999999999999999999886421 345678
Q ss_pred HHHhhhCCCCEEEECCHhHHHhhc
Q 033552 47 PILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 47 ~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
...++++|.-+.++.++.+-|.-+
T Consensus 126 ~e~~~~~G~~v~ivs~~~eeG~ql 149 (166)
T 3ir9_A 126 SELADKSNAKVVFVSTDFDEGSQL 149 (166)
T ss_dssp HHHHHHTTCEEEEECSCSHHHHHH
T ss_pred HHHHHhcCCEEEEECCCChhHHHH
Confidence 889999999999999999988654
No 31
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=89.05 E-value=0.34 Score=32.39 Aligned_cols=59 Identities=7% Similarity=-0.077 Sum_probs=44.8
Q ss_pred CccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHH
Q 033552 9 HSFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 67 (117)
Q Consensus 9 ~~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG 67 (117)
+...++|..+..+.+++..+..|++|-..........+...|+..++.+..+++..++-
T Consensus 47 ~g~pV~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~~ 105 (141)
T 3nkl_A 47 QGITIYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDLV 105 (141)
T ss_dssp TTEEEECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHHH
T ss_pred cCeEEECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHHh
Confidence 34566774444555677788899999765443567889999999999999999998864
No 32
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=88.07 E-value=0.83 Score=34.86 Aligned_cols=78 Identities=8% Similarity=-0.069 Sum_probs=55.3
Q ss_pred CCCCCccceeeeecchhhhhcC--CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEe
Q 033552 5 NDNLHSFNCVGVVNDPLPLLFH--ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 82 (117)
Q Consensus 5 ~~~~~~~~~vG~kqt~kaL~kg--~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~ 82 (117)
.+....+-+-|.+-+..+|+.+ ...-+++..+..... ...+..+|+..++|+..+ +++.|-+.++...+-.++++.
T Consensus 7 r~~~~~~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~i~v~~v-~~~~l~~ls~~~~~qGv~a~~ 84 (253)
T 1gz0_A 7 RGSHMSEMIYGIHAVQALLERAPERFQEVFILKGREDKR-LLPLIHALESQGVVIQLA-NRQYLDEKSDGAVHQGIIARV 84 (253)
T ss_dssp -----CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTT-THHHHHHHHHHTCEEEEE-CSHHHHHTTTSCCCTTEEEEE
T ss_pred cCCCCcEEEEEHHHHHHHHhcCCCCeEEEEEECCccchh-HHHHHHHHHHCCCcEEEe-CHHHHHHHhCCCCCcEEEEEE
Confidence 3444567778999999999988 477888888765422 456777888899998766 568899988876566666666
Q ss_pred ec
Q 033552 83 TK 84 (117)
Q Consensus 83 ~~ 84 (117)
..
T Consensus 85 ~~ 86 (253)
T 1gz0_A 85 KP 86 (253)
T ss_dssp CC
T ss_pred ec
Confidence 53
No 33
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=86.40 E-value=0.44 Score=33.08 Aligned_cols=59 Identities=7% Similarity=-0.138 Sum_probs=48.7
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCC--C-----cchheeHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNIS--P-----IDVITHVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Das--p-----~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
.-+-|.++|.+|+..|.+..++|..|.- + .++.. +...++++|..+.++.+..+-|.-+
T Consensus 38 ~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL 103 (124)
T 1x52_A 38 RAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL 103 (124)
T ss_dssp GEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred cEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH
Confidence 4578999999999999999999998842 1 22445 7888899999999999998888665
No 34
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=86.35 E-value=1.2 Score=34.46 Aligned_cols=73 Identities=10% Similarity=-0.025 Sum_probs=52.6
Q ss_pred CccceeeeecchhhhhcC-CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecC
Q 033552 9 HSFNCVGVVNDPLPLLFH-ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKP 85 (117)
Q Consensus 9 ~~~~~vG~kqt~kaL~kg-~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~ 85 (117)
..+-+-|.+-+..+|+.| ...-+++..+... . ..+...|...++|+..+ +++.|.+.++...+-.++++...+
T Consensus 33 g~flveG~~~V~eaL~~~~~i~~l~~~~~~~~-~--~~l~~~~~~~~~~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 33 KTTLIEDTEPLMECIRAGVQFIEVYGSSGTPL-D--PALLDLCRQREIPVRLI-DVSIVNQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp CEEEEESHHHHHHHHHTTCCEEEEEEETTSCC-C--HHHHHHHHHTTCCEEEE-CHHHHTTCC-----CCEEEEEECC
T ss_pred CCEEEEeHHHHHHHHhCCCCeEEEEEeCCccC-c--HHHHHHHHhcCCcEEEE-CHHHHHHhhCCCCCCeEEEEEecC
Confidence 345677999999999988 4677888887664 2 45667788899998877 788999988876666667776644
No 35
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=83.68 E-value=0.7 Score=36.97 Aligned_cols=55 Identities=13% Similarity=0.028 Sum_probs=49.2
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHh
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 68 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~ 68 (117)
.=+-|+..+.+|++.|.+..++|..| . +++..+...++..|-.+.++.+..+-|.
T Consensus 299 ~a~yG~~eV~~Al~~GaVetLlv~d~--r-d~~~~L~e~a~~~G~~V~ivs~~~~~g~ 353 (373)
T 3agk_A 299 MIVYGEKDVEAALEMGAVKTLLIHES--R-EDLEEWVEKAKSSGAQVIVVPESLAEAE 353 (373)
T ss_dssp CEEESHHHHHHHHHTTCEEEEEEETT--C-TTHHHHHHHHTTTTCEEEEECTTSTTHH
T ss_pred cEeeCHHHHHHHHHhCCccEEEEeCC--h-hHHHHHHHHHHHcCCEEEEECCCCccHH
Confidence 34789999999999999999999998 3 6789999999999999999999977774
No 36
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=83.05 E-value=3.3 Score=29.15 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=39.4
Q ss_pred chhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 19 DPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 19 t~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
..+.|++.....++|.++.+. +....+..+|.++|+|+..|.+
T Consensus 55 ~~~~l~~~~~~~l~ing~l~~-~~~~~YiklA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 55 AEHELKNSHNVTLLINGELQY-QSYSSYIQMASRYGVPFKIVSD 97 (133)
T ss_dssp HHHHHHTCSSEEEEEETTSCH-HHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHhhCCCcEEEEcCCCCH-HHHHHHHHHHHHcCCCeEEecC
Confidence 466888899999999999997 6899999999999999999988
No 37
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=82.13 E-value=0.38 Score=38.67 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=51.5
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCC-CcchheeHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNIS-PIDVITHVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Das-p~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
.=+.|.+++.+|++.|.+..++|..+.. ..+ +..+.+.++++|.-+.++.+..+-|..+
T Consensus 265 ~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL 324 (347)
T 2qi2_A 265 MGVYGRDQTESALQMGALSDLIITDEMFRTED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV 324 (347)
T ss_dssp CEEESHHHHHHHHHTTCEEEEEEEHHHHTSHH-HHHHHHHHHHHTCEEEEECTTSHHHHHH
T ss_pred CEEEcHHHHHHHHHcCCCeEEEEecccccchh-HHHHHHHHHHcCCEEEEECCCCcchHHH
Confidence 4578999999999999999999999875 334 7888899999999999999998888665
No 38
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=81.59 E-value=1.4 Score=35.96 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=47.8
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCC--------C-----------------------------------cchheeHH
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNIS--------P-----------------------------------IDVITHVP 47 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Das--------p-----------------------------------~~i~~~i~ 47 (117)
.=+-|...|.+|++.|.+..++|..|.. + .+++..|.
T Consensus 300 ~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~ 379 (437)
T 1dt9_A 300 KYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFA 379 (437)
T ss_dssp CEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHHHHHH
T ss_pred cEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHHHHHH
Confidence 4578999999999999999999998865 1 01233377
Q ss_pred HHhhhCCCCEEEECCHhHHHhh
Q 033552 48 ILCEESDIPYIYVASKEDLANA 69 (117)
Q Consensus 48 ~lce~~~IP~i~v~tK~eLG~A 69 (117)
..++++|..+.++.+..+-|..
T Consensus 380 e~~~~~G~~V~ivs~~~e~G~q 401 (437)
T 1dt9_A 380 NNYKKFGATLEIVTDKSQEGSQ 401 (437)
T ss_dssp HTCTTTTSCEEEECSSSHHHHH
T ss_pred HHHHHcCCEEEEECCCChhHHH
Confidence 7888999999999999988865
No 39
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=80.88 E-value=2.2 Score=35.34 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=49.3
Q ss_pred ceeeeecchhhhhcCCccEEEEeCCCCC---------------------------------------------cchheeH
Q 033552 12 NCVGVVNDPLPLLFHECRLCVIAGNISP---------------------------------------------IDVITHV 46 (117)
Q Consensus 12 ~~vG~kqt~kaL~kg~~~LViLA~Dasp---------------------------------------------~~i~~~i 46 (117)
-+.|.++|.+|++.|.+..++|..+..- .+++..+
T Consensus 306 a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l 385 (441)
T 3e20_C 306 YCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWL 385 (441)
T ss_dssp CCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-----------------CCEEHHHHH
T ss_pred EEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccCcccCccceecchhhHHHHH
Confidence 5789999999999999999999987740 1344467
Q ss_pred HHHhhhCCCCEEEECCHhHHHhhc
Q 033552 47 PILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 47 ~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
...++++|.-+.++.++.+-|..+
T Consensus 386 ~e~a~~~G~~v~~vs~~~~eG~ql 409 (441)
T 3e20_C 386 AEHYKDYGANLEFVSDRSQEGMQF 409 (441)
T ss_dssp HHHGGGGSCCEEEECTTSHHHHHH
T ss_pred HHHHHHcCCEEEEECCCCHHHHHH
Confidence 889999999999999999999654
No 40
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=80.82 E-value=1.2 Score=33.16 Aligned_cols=46 Identities=9% Similarity=0.040 Sum_probs=37.4
Q ss_pred eeecchhhhhcCCccEEEEeCC---CCC--cchheeHHHHhhhCCCCEEEEC
Q 033552 15 GVVNDPLPLLFHECRLCVIAGN---ISP--IDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 15 G~kqt~kaL~kg~~~LViLA~D---asp--~~i~~~i~~lce~~~IP~i~v~ 61 (117)
|--|....|++|++.+||--.| ..| .+ ...|...|-.+||||..--
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D-~~~IRR~A~~~~IP~~Tnl 136 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVD-VKALIRIATVYNIPVAITR 136 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCC-HHHHHHHHHHTTCCEESSH
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCccccc-HHHHHHHHHHcCCCEEeCH
Confidence 5568899999999999999888 333 24 7789999999999996543
No 41
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=80.56 E-value=1 Score=32.51 Aligned_cols=46 Identities=11% Similarity=-0.032 Sum_probs=36.7
Q ss_pred eeecchhhhhcCCccEEEEeCC---CCC-cchheeHHHHhhhCCCCEEEE
Q 033552 15 GVVNDPLPLLFHECRLCVIAGN---ISP-IDVITHVPILCEESDIPYIYV 60 (117)
Q Consensus 15 G~kqt~kaL~kg~~~LViLA~D---asp-~~i~~~i~~lce~~~IP~i~v 60 (117)
|--|....|++|++.+||--.| ..| ..=...|...|-.+||||..-
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~ 119 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATN 119 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESS
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeC
Confidence 5567899999999999999888 333 222677999999999999643
No 42
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=79.63 E-value=1.1 Score=31.74 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=36.9
Q ss_pred eeecchhhhhcCCccEEEEeCC--C-CC--cchheeHHHHhhhCCCCEEEEC
Q 033552 15 GVVNDPLPLLFHECRLCVIAGN--I-SP--IDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 15 G~kqt~kaL~kg~~~LViLA~D--a-sp--~~i~~~i~~lce~~~IP~i~v~ 61 (117)
|--|....|++|++.+||--.| . .| .| ...|...|-.++|||..--
T Consensus 62 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D-~~~IrR~A~~~~IP~~T~l 112 (134)
T 2xw6_A 62 GDQQMGARVAEGRILAVIFFRDPLTAQPHEPD-VQALLRVCDVHGVPLATNP 112 (134)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTTCCTTSCC-SHHHHHHHHHHTCCEECSH
T ss_pred CcchHHHHHHCCCccEEEEccCcccCCCccch-HHHHHHHHHHcCCCeEcCH
Confidence 5567899999999999999888 2 22 24 6789999999999997543
No 43
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=76.01 E-value=0.53 Score=37.88 Aligned_cols=60 Identities=7% Similarity=0.007 Sum_probs=49.9
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCC---cchheeHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISP---IDVITHVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp---~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
.-+-|.+.+.+|++.|.+.-++|..|..- .+.+..+...+++.|.-+.++.+..+-|.-+
T Consensus 280 ~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL 342 (357)
T 3j15_A 280 LVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKL 342 (357)
T ss_dssp TEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred cEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhh
Confidence 34789999999999999999999877543 3568889999999999999999886666543
No 44
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=74.72 E-value=0.8 Score=36.95 Aligned_cols=61 Identities=8% Similarity=-0.059 Sum_probs=50.0
Q ss_pred ccceeeeecchhhhhcCCccEEEEeCCCCCc----chheeHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 10 SFNCVGVVNDPLPLLFHECRLCVIAGNISPI----DVITHVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~----~i~~~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
..-+-|.++|.+|+..|.+.-++|..|..-. ..+..+.+.++++|.-+.++.+..+-|.-+
T Consensus 264 ~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL 328 (352)
T 3oby_A 264 ERVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRL 328 (352)
T ss_dssp CSEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH
T ss_pred CcEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHH
Confidence 3457899999999999999999999775321 257888999999999999999996666544
No 45
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=73.97 E-value=4.9 Score=30.94 Aligned_cols=73 Identities=12% Similarity=0.045 Sum_probs=49.2
Q ss_pred cceeeeecchhhhhcC-CccEEEEeCCCCCcchheeHHHHhhhCC-CCEEEECCHhHHHhhcCCCcceEEEEEeecC
Q 033552 11 FNCVGVVNDPLPLLFH-ECRLCVIAGNISPIDVITHVPILCEESD-IPYIYVASKEDLANAGATKRPTCCVLVLTKP 85 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg-~~~LViLA~Dasp~~i~~~i~~lce~~~-IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~ 85 (117)
+-+-|.+-+..+|+.| .+.-+++..+..... ...+...+...+ +|+.. -+++.|-+.++...+-.++++...|
T Consensus 29 f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~~~~v~~-v~~~~l~~ls~~~~~qGv~a~~~~~ 103 (274)
T 1ipa_A 29 FLIEGAREIERALQAGIELEQALVWEGGLNPE-EQQVYAALGRVGRLALLE-VSEAVLKKLSVRDNPAGLIALARMP 103 (274)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTCCCHH-HHHHHHCC-----CEEEE-ECHHHHHHHCCSSSCCSEEEEEECC
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEEcCcccch-HHHHHHHHHhcCCccEEE-eCHHHHHHHhCCCCCCeEEEEEeCC
Confidence 4567999999999987 577888888765421 344555677778 88754 5688999999877666666666544
No 46
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=73.32 E-value=1.8 Score=35.06 Aligned_cols=60 Identities=8% Similarity=-0.028 Sum_probs=50.3
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCC-----cchheeHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISP-----IDVITHVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp-----~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
.-+-|.++|.+|++.|.+..++|..|..- .+.+..+...++++|.-+.++.+..+-|.-+
T Consensus 285 ~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL 349 (364)
T 3obw_A 285 LVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYFEL 349 (364)
T ss_dssp SEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHH
T ss_pred cEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCchhh
Confidence 45789999999999999999999988653 1357788889999999999999987766544
No 47
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=72.82 E-value=2.5 Score=29.39 Aligned_cols=43 Identities=12% Similarity=-0.056 Sum_probs=33.4
Q ss_pred ecchhhhhcCCccEEEEeCCCC--CcchheeHHHHhhhCCCCEEE
Q 033552 17 VNDPLPLLFHECRLCVIAGNIS--PIDVITHVPILCEESDIPYIY 59 (117)
Q Consensus 17 kqt~kaL~kg~~~LViLA~Das--p~~i~~~i~~lce~~~IP~i~ 59 (117)
-|....|++|++.+||--.|-. +..=-..|...|-+++|||+.
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 4677889999999999887653 111256788899999999964
No 48
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=72.38 E-value=3 Score=33.75 Aligned_cols=60 Identities=5% Similarity=-0.072 Sum_probs=49.4
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCC-cc-----hheeHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISP-ID-----VITHVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp-~~-----i~~~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
.-+.|..++.+|+..|.+..++|..|.-- .+ .+..|...++++|.-+.++.+..+-|..+
T Consensus 297 ~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL 362 (386)
T 2vgn_A 297 KAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEEL 362 (386)
T ss_dssp SEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHH
T ss_pred cEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhH
Confidence 45789999999999999999999998531 01 15677888899999999999998888555
No 49
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=72.07 E-value=1.4 Score=35.28 Aligned_cols=60 Identities=5% Similarity=-0.090 Sum_probs=49.5
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCC------cchheeHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISP------IDVITHVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp------~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
.-+.|.+++.+|++.|.+.-++|..|..- .+....+.+.++++|..+.++.+..+-|.-+
T Consensus 272 ~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL 337 (358)
T 3agj_B 272 TVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL 337 (358)
T ss_dssp GEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred cEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh
Confidence 44789999999999999999999987431 1236677888889999999999999988654
No 50
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=69.06 E-value=2.9 Score=27.67 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=28.3
Q ss_pred chhhhhcCCc--cEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 19 DPLPLLFHEC--RLCVIAGNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 19 t~kaL~kg~~--~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
+.++|++-+. .|.|++.|..+ ...|+.+|++.|-.+....
T Consensus 43 tkkaL~~l~~Ge~L~Vl~dd~~a---~~dI~~~~~~~G~~v~~~e 84 (98)
T 1jdq_A 43 TKRALQNMKPGEILEVWIDYPMS---KERIPETVKKLGHEVLEIE 84 (98)
T ss_dssp HHHHHHTCCTTCEEEEEESSCTH---HHHHHHHHHHSSCCEEEEE
T ss_pred HHHHHHhCCCCCEEEEEECCccH---HHHHHHHHHHCCCEEEEEE
Confidence 4445554333 38899998653 6789999999998886553
No 51
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=67.04 E-value=3.4 Score=27.38 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=27.7
Q ss_pred ecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE
Q 033552 17 VNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV 60 (117)
Q Consensus 17 kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v 60 (117)
|..++.|..|+. |.|++.|..+ ...|+.+|++.|-.+...
T Consensus 45 kkaL~~l~~Ge~-L~Vl~dd~~a---~~dIp~~~~~~G~~v~~~ 84 (97)
T 1je3_A 45 LEAMPQLKKGEI-LEVVSDCPQS---INNIPLDARNHGYTVLDI 84 (97)
T ss_dssp HHHTTTCCSSCE-EEEEEBCSSS---SCHHHHHHHHHTCSEEEE
T ss_pred HHHHHcCCCCCE-EEEEECCcch---HHHHHHHHHHCCCEEEEE
Confidence 333444444433 8899999554 568999999999888654
No 52
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=67.03 E-value=12 Score=24.82 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=45.2
Q ss_pred cEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC-HhHHHhhcCCCc-c-----eEEEEEeecCCCCccc--hHHHHhhH
Q 033552 29 RLCVIAGNISPIDVITHVPILCEESDIPYIYVAS-KEDLANAGATKR-P-----TCCVLVLTKPTKGELG--QEEQDKLK 99 (117)
Q Consensus 29 ~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t-K~eLG~A~G~~~-~-----~svv~I~~~~~~~~~~--~~e~~~~~ 99 (117)
.++.|..| ++ ..+..+++++++++-.+.+ ..++.++.|... + ++..+| .++-..... .....+..
T Consensus 70 ~vv~is~d-~~----~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~~~~~~ 143 (159)
T 2a4v_A 70 AVFGLSAD-SV----TSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPEVSVN 143 (159)
T ss_dssp EEEEEESC-CH----HHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHHHHHH
T ss_pred cEEEEeCC-CH----HHHHHHHHHhCCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccCCccccHH
Confidence 77777777 22 2356688888888766654 567888888753 2 144556 544321100 01223445
Q ss_pred HHHHHHHHHHHhh
Q 033552 100 ADYTLVVEDVKEL 112 (117)
Q Consensus 100 ~~~~e~~~~~~~l 112 (117)
..++++.+.+++|
T Consensus 144 ~~~~~l~~~l~~l 156 (159)
T 2a4v_A 144 DAKKEVLEVAEKF 156 (159)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5666666666665
No 53
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=61.75 E-value=5.2 Score=32.46 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=53.2
Q ss_pred cceeeeecchhhhhcCCccEEEEeCCCCC-cch-----heeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeec
Q 033552 11 FNCVGVVNDPLPLLFHECRLCVIAGNISP-IDV-----ITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 84 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~~~LViLA~Dasp-~~i-----~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~ 84 (117)
.-+.|.+.|.+|+..|.+.-++|..+.-. .++ ...+.+.++++|--+.++.+..+-|..+..=.+. +||+-=
T Consensus 291 ~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL~~lgGi--aAiLRy 368 (390)
T 3mca_B 291 KAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLSGI--AAILTY 368 (390)
T ss_dssp SEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHHHHTTSE--EEEBSS
T ss_pred cEEECHHHHHHHHHcCCCeEEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhhhhcCCcE--EEEEec
Confidence 35789999999999999999999988642 121 1257778999999999999998777655211133 455553
Q ss_pred C
Q 033552 85 P 85 (117)
Q Consensus 85 ~ 85 (117)
|
T Consensus 369 ~ 369 (390)
T 3mca_B 369 P 369 (390)
T ss_dssp C
T ss_pred c
Confidence 4
No 54
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=61.26 E-value=22 Score=28.19 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=44.1
Q ss_pred hhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCCcceEEEEEeecCCCC
Q 033552 21 LPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKG 88 (117)
Q Consensus 21 kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~~~~svv~I~~~~~~~ 88 (117)
+.|.+. +-++|+-++-...+ ..+|.++|++.+.|-.++.+-+||-..-=. +...++|+.|-+..
T Consensus 204 ~~la~~-~D~miVVGg~nSSN-T~rL~eia~~~~~~ty~Ie~~~el~~~wl~--~~~~VGITAGASTP 267 (297)
T 3dnf_A 204 KKLAPE-VDVMIIIGGKNSGN-TRRLYYISKELNPNTYHIETAEELQPEWFR--GVKRVGISAGASTP 267 (297)
T ss_dssp HHHGGG-SSEEEEESCTTCHH-HHHHHHHHHHHCSSEEEESSGGGCCGGGGT--TCSEEEEEECTTCC
T ss_pred HHHHhh-CCEEEEECCCCCch-hHHHHHHHHhcCCCEEEeCChHHCCHHHhC--CCCEEEEeecCCCC
Confidence 445443 55555555444334 789999999999999999999999743222 23457888876644
No 55
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=60.01 E-value=5 Score=25.31 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.9
Q ss_pred eecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE
Q 033552 16 VVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV 60 (117)
Q Consensus 16 ~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v 60 (117)
+|..++.+..|+ .|.|++.|-.. ...|+.+|+..|-.+...
T Consensus 27 ~kkal~~l~~G~-~l~V~~dd~~a---~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 27 VRKTVRNMQPGE-TLLIIADDPAT---TRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp HHHHHHTSCTTC-EEEEEECCTTH---HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhCCCCC-EEEEEECCccH---HHHHHHHHHHCCCEEEEE
Confidence 344444455554 47888888553 678999999999988765
No 56
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=59.29 E-value=16 Score=28.86 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=33.4
Q ss_pred cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 18 NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
+.++.+-+.+...+|++.+..|. ..+.+.|++++||+....
T Consensus 74 ~~~~~l~~~~iP~IIvtrg~~pp---~elie~A~e~~ipLl~T~ 114 (312)
T 1knx_A 74 QILHNLLKLNPPAIILTKSFTDP---TVLLQVNQTYQVPILKTD 114 (312)
T ss_dssp TTHHHHHTTCCSCEEEETTTCCC---HHHHHHGGGTCCCEEEES
T ss_pred HHHHHHhCCCCCEEEEECCCCCC---HHHHHHHHHcCCEEEEeC
Confidence 56666777789999999998873 357789999999998765
No 57
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=57.82 E-value=7.9 Score=26.46 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=33.7
Q ss_pred eeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHh
Q 033552 14 VGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 68 (117)
Q Consensus 14 vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~ 68 (117)
+|+.+.+..=.=..+.+||||.|..+.+ ..+..|.|++.++..+-|-.
T Consensus 47 ~G~~n~Lt~~~I~~Ad~VIiA~d~~v~~-------~~RF~GK~v~~~~v~~ai~~ 94 (111)
T 2kyr_A 47 DGIQNRLTAQDIAEATIIIHSVAVTPED-------NERFESRDVYEITLQDAIKN 94 (111)
T ss_dssp TEEESCCCHHHHHHCSEEEEEESSCCTT-------GGGGTTSCEEEEETTHHHHS
T ss_pred CCcCCCCCHHHHHhCCEEEEEeCCCcCc-------hhhcCCCeEEEeCHHHHHHC
Confidence 5666644444444588999999988633 34677899999888776643
No 58
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=57.23 E-value=9.1 Score=25.87 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=36.5
Q ss_pred cccee-eeecc--hhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC-CHhHHH
Q 033552 10 SFNCV-GVVND--PLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLA 67 (117)
Q Consensus 10 ~~~~v-G~kqt--~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~-tK~eLG 67 (117)
+..++ |-... +.++..-....+|+.++..|.+ .+..+|+++|||++.+. +.-+.-
T Consensus 54 ~l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~~---~i~~~A~~~~ipvl~t~~~T~~~~ 112 (139)
T 2ioj_A 54 AALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQ---LVLTKAEERGVPVILTGHDTLTAV 112 (139)
T ss_dssp EEEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCH---HHHHHHHHHTCCEEECSSCHHHHH
T ss_pred EEEEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCCH---HHHHHHHHCCCeEEEECCCHHHHH
Confidence 34555 55532 2344414588999999988743 45579999999999887 444443
No 59
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=55.92 E-value=27 Score=22.60 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=32.5
Q ss_pred ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCH----hHHHhhcCCCcceEEEEE
Q 033552 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASK----EDLANAGATKRPTCCVLV 81 (117)
Q Consensus 28 ~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK----~eLG~A~G~~~~~svv~I 81 (117)
+.++.|..|-++ ..+....+++++++..+.+. .++.+..|...--+.++|
T Consensus 70 ~~~v~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~li 123 (150)
T 3fw2_A 70 IGMLGISLDVDK----QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILL 123 (150)
T ss_dssp EEEEEEECCSCH----HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEE
T ss_pred eEEEEEEcCCCH----HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEE
Confidence 555556555443 44666778888888877763 689999998733333444
No 60
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=53.20 E-value=6.3 Score=26.18 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=32.9
Q ss_pred hhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC-CHhHHHhhcCCCc
Q 033552 20 PLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLANAGATKR 74 (117)
Q Consensus 20 ~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~-tK~eLG~A~G~~~ 74 (117)
.+.++...+.+|.|+.| ++ ..+..+++++++++..+. ...++.++.|...
T Consensus 62 ~~~~~~~~~~vv~vs~d-~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 112 (163)
T 3gkn_A 62 LPEFDKAGAKILGVSRD-SV----KSHDNFCAKQGFAFPLVSDGDEALCRAFDVIK 112 (163)
T ss_dssp HHHHHHTTCEEEEEESS-CH----HHHHHHHHHHCCSSCEEECTTCHHHHHTTCEE
T ss_pred HHHHHHCCCEEEEEeCC-CH----HHHHHHHHHhCCCceEEECCcHHHHHHhCCcc
Confidence 34445455778888887 33 234557778887766554 4568888888753
No 61
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=53.16 E-value=8 Score=29.01 Aligned_cols=57 Identities=18% Similarity=0.019 Sum_probs=34.6
Q ss_pred ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcC---CCcceEEEEEeecCCCC
Q 033552 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA---TKRPTCCVLVLTKPTKG 88 (117)
Q Consensus 28 ~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G---~~~~~svv~I~~~~~~~ 88 (117)
+-+||.|.|..+ +-..+-..|+ .+||+..+++. +++...= .+++-..++|.+++...
T Consensus 92 adLVIaAT~d~~--~N~~I~~~ak-~gi~VNvvD~p-~~~~f~~Paiv~rg~l~iaIST~G~sP 151 (223)
T 3dfz_A 92 VFFIVVATNDQA--VNKFVKQHIK-NDQLVNMASSF-SDGNIQIPAQFSRGRLSLAISTDGASP 151 (223)
T ss_dssp CSEEEECCCCTH--HHHHHHHHSC-TTCEEEC------CCSEECCEEEEETTEEEEEECTTSCH
T ss_pred CCEEEECCCCHH--HHHHHHHHHh-CCCEEEEeCCc-ccCeEEEeeEEEeCCEEEEEECCCCCc
Confidence 678888888664 5677888898 99997666554 4443321 11233468888877655
No 62
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=53.05 E-value=20 Score=28.86 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=42.9
Q ss_pred hhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHh-hcCCCcceEEEEEeecCCCC
Q 033552 21 LPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKG 88 (117)
Q Consensus 21 kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~-A~G~~~~~svv~I~~~~~~~ 88 (117)
+.|.+. +-++|+-++-...+ ..+|..+|++.|.|-.++.+-+||-. ++. +...++|+.|-+..
T Consensus 220 ~~lA~~-vD~miVVGg~nSSN-T~rL~eia~~~g~~ty~Ie~~~el~~~wl~---g~~~VGITAGASTP 283 (328)
T 3szu_A 220 RALAEQ-AEVVLVVGSKNSSN-SNRLAELAQRMGKRAFLIDDAKDIQEEWVK---EVKCVGVTAGASAP 283 (328)
T ss_dssp HHHHHH-CSEEEEECCTTCHH-HHHHHHHHHHTTCEEEEESSGGGCCHHHHT---TCSEEEEEECTTCC
T ss_pred HHHHHh-CCEEEEeCCCCCch-HHHHHHHHHHhCCCEEEeCChHHCCHHHhC---CCCEEEEeecCCCC
Confidence 344443 44554444443334 78999999999999999999999974 332 23457888876644
No 63
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=51.92 E-value=27 Score=26.33 Aligned_cols=72 Identities=4% Similarity=0.016 Sum_probs=41.3
Q ss_pred CCCCcchheeHHHHhhhCCCCEEEECCH--hHHHhhcCCCcceEEEEEeecCCCCccchHHHHhhHHHHHHHHHHHHh
Q 033552 36 NISPIDVITHVPILCEESDIPYIYVASK--EDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKE 111 (117)
Q Consensus 36 Dasp~~i~~~i~~lce~~~IP~i~v~tK--~eLG~A~G~~~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 111 (117)
+.||.+ +..+.+++++++|+++++.+. ..+.+.+-...++-++.+ .|.... .....++|-+++....+.+.+
T Consensus 206 eps~~~-l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l--d~l~~~-~~~~~~~Y~~~m~~n~~~l~~ 279 (284)
T 2prs_A 206 QPGAQR-LHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTL--DPLGTN-IKLGKTSYSEFLSQLANQYAS 279 (284)
T ss_dssp CCCHHH-HHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEEC--CTTCTT-SCCSTTHHHHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEe--ccCccc-CCCCcccHHHHHHHHHHHHHH
Confidence 344444 678888999999999999743 344455444434433332 243221 111123677777776666654
No 64
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=51.51 E-value=43 Score=22.71 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=44.9
Q ss_pred cCCccEEEEeCCCCCc-ch--heeHHHHhhhCCCCEEEEC---------CHhHHHhhcCCCcceEEEEEeecCCCCccch
Q 033552 25 FHECRLCVIAGNISPI-DV--ITHVPILCEESDIPYIYVA---------SKEDLANAGATKRPTCCVLVLTKPTKGELGQ 92 (117)
Q Consensus 25 kg~~~LViLA~Dasp~-~i--~~~i~~lce~~~IP~i~v~---------tK~eLG~A~G~~~~~svv~I~~~~~~~~~~~ 92 (117)
.+..+.||+-.|..+. +- .......+++.+|++..++ +.++|-...+...+.-+..+.
T Consensus 108 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~---------- 177 (198)
T 1n3y_A 108 RDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVE---------- 177 (198)
T ss_dssp TTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEES----------
T ss_pred CCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeC----------
Confidence 3456789999998764 21 1344556688999887664 257777776654333222222
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 033552 93 EEQDKLKADYTLVVEDVK 110 (117)
Q Consensus 93 ~e~~~~~~~~~e~~~~~~ 110 (117)
+.+.+.+.|+++.+.+-
T Consensus 178 -~~~~l~~~~~~i~~~ic 194 (198)
T 1n3y_A 178 -DFDALKDIQNQLKEKIF 194 (198)
T ss_dssp -SGGGGGGGHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhhee
Confidence 13456667777766553
No 65
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=50.19 E-value=2.5 Score=26.27 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=26.7
Q ss_pred eecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEE
Q 033552 16 VVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIY 59 (117)
Q Consensus 16 ~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~ 59 (117)
+|..++.|..|+. |.|++.|-.+ ...|+.+|++.|-.+..
T Consensus 23 ~k~al~~l~~G~~-L~V~~dd~~a---~~di~~~~~~~G~~~~~ 62 (78)
T 1pav_A 23 LIKAYKQAKVGEV-ISVYSTDAGT---KKDAPAWIQKSGQELVG 62 (78)
T ss_dssp HHHHHTTSCTTCC-EECCBSSSCH---HHHHHHHHHHHTEEECC
T ss_pred HHHHHHcCCCCCE-EEEEECCccH---HHHHHHHHHHCCCEEEE
Confidence 3444444444533 8888888553 67899999999876643
No 66
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=46.73 E-value=27 Score=22.63 Aligned_cols=46 Identities=9% Similarity=-0.043 Sum_probs=31.4
Q ss_pred CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC----CHhHHHhhcCCC
Q 033552 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA----SKEDLANAGATK 73 (117)
Q Consensus 27 ~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~----tK~eLG~A~G~~ 73 (117)
.+.+|.|..|-... -...+...++++++++..+. ...++.++.|..
T Consensus 61 ~~~vv~vs~d~~~d-~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~ 110 (164)
T 2ggt_A 61 DLTPLFISIDPERD-TKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVY 110 (164)
T ss_dssp CEEEEEEESCTTTC-CHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCC
T ss_pred cEEEEEEEeCCCCC-CHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeE
Confidence 57777888776432 25567788889998887762 233577777765
No 67
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=44.39 E-value=71 Score=21.56 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=36.4
Q ss_pred eeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC-CHhHHHhhcCC
Q 033552 15 GVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLANAGAT 72 (117)
Q Consensus 15 G~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~-tK~eLG~A~G~ 72 (117)
.+.+..+.+++..+.++.|+.|. + ..+..+++++++||-.+. ...+++++.|.
T Consensus 55 ~l~~~~~~~~~~~v~vv~is~d~-~----~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv 108 (164)
T 4gqc_A 55 TFRDKMAQLEKANAEVLAISVDS-P----WCLKKFKDENRLAFNLLSDYNREVIKLYNV 108 (164)
T ss_dssp ESCCCGGGGGGSSSEEEEEESSC-H----HHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred hhhhhHHHhhccCceEEEecCCC-H----HHHHHHHHhcCcccceeecCchHHHHHcCC
Confidence 44556666666667788887763 2 234568899999886654 55688888885
No 68
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=44.00 E-value=48 Score=21.10 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=27.6
Q ss_pred ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE-CCHhHHHhhcCCC-cceEEEEE
Q 033552 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATK-RPTCCVLV 81 (117)
Q Consensus 28 ~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v-~tK~eLG~A~G~~-~~~svv~I 81 (117)
+.++.+..|.++ ...+..+++++++++-.. ....++.+..|.. .|+ .++|
T Consensus 62 ~~vv~v~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~-~~li 113 (153)
T 2l5o_A 62 FQVLAVAQPIDP---IESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPT-SVLI 113 (153)
T ss_dssp EEEEEEECTTSC---HHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSE-EEEE
T ss_pred eEEEEEecCCCC---HHHHHHHHHHcCCCceEEcCchHHHHHHcCCCccCe-EEEE
Confidence 444444444333 234555666667665433 3466888888876 344 3444
No 69
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=42.97 E-value=6.8 Score=25.17 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=30.4
Q ss_pred eecchhhhh-cCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 16 VVNDPLPLL-FHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 16 ~kqt~kaL~-kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
+|..++.+. .|+ .|.|++.|-.+ ...|+.+|+..|-.+....
T Consensus 18 ~kkal~~l~~~G~-~L~V~~dd~~a---~~dI~~~~~~~G~~v~~~~ 60 (87)
T 3hz7_A 18 AKKALAELGEAGG-VVTVLVDNDIS---RQNLQKMAEGMGYQSEYLE 60 (87)
T ss_dssp HHHHHHTTGGGCC-EEEEEESSHHH---HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHhccCCCC-EEEEEECCccH---HHHHHHHHHHCCCEEEEEE
Confidence 445555565 554 68888888442 7789999999999887653
No 70
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=42.64 E-value=19 Score=24.31 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=31.6
Q ss_pred eeeecch--hhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHH
Q 033552 14 VGVVNDP--LPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 67 (117)
Q Consensus 14 vG~kqt~--kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG 67 (117)
.|+++.+ +.|. .+.+||+|.|....+ ..++.|-|++.++.++-|-
T Consensus 44 ~g~~n~Lt~~~I~--~AD~VIia~d~~v~~-------~~RF~gk~v~~~~v~~~i~ 90 (106)
T 2m1z_A 44 TGIENELTEKDVN--IGEVVIFAVDTKVRN-------KERFDGKVVLEVPVSAPIK 90 (106)
T ss_dssp TEESSCCCHHHHH--HCSEEEEEESSCCST-------HHHHTTSEEEEECTTHHHH
T ss_pred ccccCCCCHHHHh--hCCEEEEeccccccc-------hhccCCCcEEEEcHHHHHH
Confidence 4555544 4454 688999999987422 4466789999998877553
No 71
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=41.62 E-value=16 Score=24.72 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=33.4
Q ss_pred eeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHh
Q 033552 14 VGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 68 (117)
Q Consensus 14 vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~ 68 (117)
+|+++.+..=.-..+.+||+|.|..+ + ..+..|-|++.++..+-|-.
T Consensus 44 ~G~~n~Lt~~~I~~Ad~VIiA~d~~v-~-------~~RF~GK~v~~~~v~~ai~~ 90 (106)
T 2r48_A 44 IGVENKLTEEEIREADAIIIAADRSV-N-------KDRFIGKKLLSVGVQDGIRK 90 (106)
T ss_dssp TEEESCCCHHHHHHCSEEEEEESSCC-C-------CGGGTTSBEEEECHHHHHHC
T ss_pred CCccCCCCHHHHHhCCEEEEEeCCcc-C-------HhHcCCCeEEEeCHHHHHHC
Confidence 56665555544455889999999886 3 33667889999987766543
No 72
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=41.43 E-value=50 Score=20.71 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=27.1
Q ss_pred ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC----HhHHHhhcCCC
Q 033552 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS----KEDLANAGATK 73 (117)
Q Consensus 28 ~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t----K~eLG~A~G~~ 73 (117)
+.++.+..|.+ ...+....+++++++..+.+ ..++.+..|..
T Consensus 68 ~~~v~v~~d~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 113 (148)
T 3fkf_A 68 FAMLGISLDID----REAWETAIKKDTLSWDQVCDFTGLSSETAKQYAIL 113 (148)
T ss_dssp EEEEEEECCSC----HHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC
T ss_pred eEEEEEECCCC----HHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCC
Confidence 34444444433 24456677788887777766 45888888876
No 73
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=38.67 E-value=17 Score=25.02 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=27.5
Q ss_pred cchhhhhcCCccEEEEeCCCCCcc----hheeHHHHhhhCCCCEEEECC
Q 033552 18 NDPLPLLFHECRLCVIAGNISPID----VITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp~~----i~~~i~~lce~~~IP~i~v~t 62 (117)
..++.+++.++.+||+++|..... -...+.+...+.++|++++..
T Consensus 23 ~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 71 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPG 71 (228)
T ss_dssp HHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECC
T ss_pred HHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 344555555789999999986321 111233333456889988863
No 74
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=38.41 E-value=52 Score=20.60 Aligned_cols=42 Identities=5% Similarity=-0.062 Sum_probs=21.5
Q ss_pred ccEEEEeCCCCCcchheeHHHHhhhCCCC-EEEECCH-hH--HHhhcCCC
Q 033552 28 CRLCVIAGNISPIDVITHVPILCEESDIP-YIYVASK-ED--LANAGATK 73 (117)
Q Consensus 28 ~~LViLA~Dasp~~i~~~i~~lce~~~IP-~i~v~tK-~e--LG~A~G~~ 73 (117)
..++.+..|.++. .+....++++++ +..+.+. .. +.+..|..
T Consensus 65 ~~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~ 110 (148)
T 3hcz_A 65 IQVYAANIERKDE----EWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY 110 (148)
T ss_dssp EEEEEEECCSSSH----HHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCC
T ss_pred EEEEEEEecCCHH----HHHHHHHHcCCCCceEEeccccchhHHHhcCcC
Confidence 4444454544332 344555666654 3333322 22 88888876
No 75
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=38.37 E-value=71 Score=25.15 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCCCCcchheeHHHHhhhCCCCEEEE-CC---HhHHHhhc--CCCcceEEEEEee
Q 033552 35 GNISPIDVITHVPILCEESDIPYIYV-AS---KEDLANAG--ATKRPTCCVLVLT 83 (117)
Q Consensus 35 ~Dasp~~i~~~i~~lce~~~IP~i~v-~t---K~eLG~A~--G~~~~~svv~I~~ 83 (117)
..+++ .+...+..+|++.||||-.. .+ -.+.|... +...+++.+.+-.
T Consensus 265 ~~~~~-~l~~~l~~~a~~~gIp~q~~~~~g~gGtDa~~i~~a~~Gipt~~Igvp~ 318 (354)
T 2vpu_A 265 PNINP-KLRAFADEVAKKYEIPLQVEPSPRPTGTDANVMQINKEGVATAVLSIPI 318 (354)
T ss_dssp TTSCH-HHHHHHHHHHHHTTCCCEEEECCSCCSSTHHHHHTSTTCCEEEEEEEEE
T ss_pred CCCCH-HHHHHHHHHHHHcCCCcEEEeCCCCCccHHHHHHHhcCCCCEEEECccc
Confidence 34444 68899999999999999873 22 34555542 2234566566543
No 76
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=38.32 E-value=36 Score=24.03 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=55.0
Q ss_pred eeecchhhhhc-CCccEEEEeCCCCCc--chheeHHHHhhhCCCCEE--EECCHhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 15 GVVNDPLPLLF-HECRLCVIAGNISPI--DVITHVPILCEESDIPYI--YVASKEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 15 G~kqt~kaL~k-g~~~LViLA~Dasp~--~i~~~i~~lce~~~IP~i--~v~tK~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
++.++++.+++ +..++.++.+.+++. .....+....++.++|++ .++....+.+|.....+.. . ...|..
T Consensus 107 ~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~--~-~~~p~~-- 181 (209)
T 3cwq_A 107 ALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVS--E-VSDSKA-- 181 (209)
T ss_dssp HHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTT--T-SSSTTH--
T ss_pred HHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHH--H-hCCccc--
Confidence 44555666665 245577777777764 234556667777888876 5777788887765432221 0 001111
Q ss_pred cchHHHHhhHHHHHHHHHHHHhhh
Q 033552 90 LGQEEQDKLKADYTLVVEDVKELA 113 (117)
Q Consensus 90 ~~~~e~~~~~~~~~e~~~~~~~l~ 113 (117)
..-.+.|+++.+++.+.+.++.
T Consensus 182 --~~~~~~~~~l~~el~~~~~~~~ 203 (209)
T 3cwq_A 182 --GIAWSDYKATGKEIVEEILTLE 203 (209)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSTT
T ss_pred --hhHHHHHHHHHHHHHHHHHhhh
Confidence 0235678888888877776654
No 77
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=38.30 E-value=16 Score=26.89 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=32.9
Q ss_pred eeecchhhhhc--CCccEEEEeCCCCCc---c----hheeHHHHhhhCCCCEEEECCHhH
Q 033552 15 GVVNDPLPLLF--HECRLCVIAGNISPI---D----VITHVPILCEESDIPYIYVASKED 65 (117)
Q Consensus 15 G~kqt~kaL~k--g~~~LViLA~Dasp~---~----i~~~i~~lce~~~IP~i~v~tK~e 65 (117)
.+.+.++.+++ .++.+||+++|.... + +...+..+.+..++|++.+..=.+
T Consensus 52 ~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD 111 (330)
T 3ib7_A 52 RLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHD 111 (330)
T ss_dssp HHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTS
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCC
Confidence 45667778877 789999999998631 1 122233333445999988874333
No 78
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=38.18 E-value=16 Score=24.71 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=33.3
Q ss_pred eeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHh
Q 033552 14 VGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 68 (117)
Q Consensus 14 vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~ 68 (117)
+|+++.+..=.-..+.+||+|+|..+ + ..+..|-|++.++..+-|-.
T Consensus 44 ~G~~n~Lt~~~I~~Ad~VIiA~d~~v-~-------~~RF~GK~v~~~~v~~ai~~ 90 (106)
T 2r4q_A 44 SGIKHKLTAQEIEDAPAIIVAADKQV-E-------MERFKGKRVLQVPVTAGIRR 90 (106)
T ss_dssp TEEESCCCHHHHHHCSCEEEEESSCC-C-------CGGGTTSBEEEECHHHHHHC
T ss_pred CCccCCCCHHHHHhCCEEEEEeCCcc-C-------HhHcCCCeEEEeCHHHHHHC
Confidence 56665555544455889999999886 3 33667889999987766543
No 79
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=38.08 E-value=44 Score=29.14 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=44.7
Q ss_pred hcCCccEEEEeCCCCCc--------------c--------------------hheeHHHHhhhCCCCEEEECCHhH----
Q 033552 24 LFHECRLCVIAGNISPI--------------D--------------------VITHVPILCEESDIPYIYVASKED---- 65 (117)
Q Consensus 24 ~kg~~~LViLA~Dasp~--------------~--------------------i~~~i~~lce~~~IP~i~v~tK~e---- 65 (117)
|++..+|+|++.|+.+- + -+..+.....+++|..||+-+...
T Consensus 239 r~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y 318 (690)
T 3fcs_B 239 RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318 (690)
T ss_dssp CSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHH
T ss_pred CCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhH
Confidence 55678999999999863 0 034466667778998888776643
Q ss_pred --HHhhcCCCcceEEEEEeecCCCCccchHHHHhhHHHHHHHHH
Q 033552 66 --LANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVE 107 (117)
Q Consensus 66 --LG~A~G~~~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e~~~ 107 (117)
|-..++. +.+.++...+.+ -.+-..+.|+++..
T Consensus 319 ~~l~~~i~~----s~v~~l~~dSsn-----i~~li~~~y~~i~s 353 (690)
T 3fcs_B 319 QNYSELIPG----TTVGVLSMDSSN-----VLQLIVDAYGKIRS 353 (690)
T ss_dssp HHHHHHSTT----CEEEEECTTCTT-----HHHHHHHHHHHHTT
T ss_pred HHHHhhcCC----ceeeeeccccHH-----HHHHHHHHHHhhhc
Confidence 4455543 345555533333 23444455555543
No 80
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=37.71 E-value=16 Score=28.23 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=40.4
Q ss_pred CccEEEEeCCCCCcchheeHHHHhhhC---CCCEEEECCHhHHHh-----hcCCCcceEEEEEeecCCCCccc
Q 033552 27 ECRLCVIAGNISPIDVITHVPILCEES---DIPYIYVASKEDLAN-----AGATKRPTCCVLVLTKPTKGELG 91 (117)
Q Consensus 27 ~~~LViLA~Dasp~~i~~~i~~lce~~---~IP~i~v~tK~eLG~-----A~G~~~~~svv~I~~~~~~~~~~ 91 (117)
.+.+||.|.|.. ++-..+-..|+++ ++|+..+++.+ +.. .... .+...++|++++....+.
T Consensus 106 ~adlViaat~d~--~~n~~I~~~Ar~~f~~~i~VNvvd~pe-l~~f~~Pa~~~~-g~~l~IaIST~Gksp~lA 174 (274)
T 1kyq_A 106 AWYIIMTCIPDH--PESARIYHLCKERFGKQQLVNVADKPD-LCDFYFGANLEI-GDRLQILISTNGLSPRFG 174 (274)
T ss_dssp CEEEEEECCSCH--HHHHHHHHHHHHHHCTTSEEEETTCGG-GBSEECCEEEEE-TTTEEEEEEESSSCHHHH
T ss_pred CeEEEEEcCCCh--HHHHHHHHHHHHhcCCCcEEEECCCcc-cCeeEeeeEEEe-CCCEEEEEECCCCCcHHH
Confidence 477899988844 3567888999999 99997776654 333 1111 121468888887655433
No 81
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=37.40 E-value=73 Score=24.41 Aligned_cols=71 Identities=20% Similarity=0.159 Sum_probs=48.6
Q ss_pred cceeeeecchhhhhcCC-ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCC-cceEEEEEeecC
Q 033552 11 FNCVGVVNDPLPLLFHE-CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATK-RPTCCVLVLTKP 85 (117)
Q Consensus 11 ~~~vG~kqt~kaL~kg~-~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~-~~~svv~I~~~~ 85 (117)
+-+-|.+-+..+|+.|. +.-+++..+.... ..+..+.+..++|+.. -+.+.|.+..+.. .+-.++++...|
T Consensus 41 f~veG~~~V~eal~~~~~i~~l~~~~~~~~~---~~~~~l~~~~~~~v~~-v~~~~l~~ls~~~~~~qGv~a~~~~~ 113 (287)
T 1x7o_A 41 FLVMGVRPISLAVEHGWPVRTLLYDGQRELS---KWARELLRTVRTEQIA-MAPDLLMELGEKNEAPPEVVAVVEMP 113 (287)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEESSCCCC---HHHHHHHHHSCSEEEE-ECHHHHTTSSCSSSCCCSEEEEEECC
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEecCcccc---hhHHHHHHHcCCcEEE-eCHHHHHHHhCCCCCCCcEEEEEecC
Confidence 44679999999999875 6778888775431 1233444444588655 4788999998877 666666666544
No 82
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=37.07 E-value=42 Score=22.69 Aligned_cols=58 Identities=12% Similarity=-0.025 Sum_probs=32.5
Q ss_pred hhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEE--EECCHhHHHhhcCCCcceEEEEE
Q 033552 20 PLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYI--YVASKEDLANAGATKRPTCCVLV 81 (117)
Q Consensus 20 ~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i--~v~tK~eLG~A~G~~~~~svv~I 81 (117)
++.+.+..+.++.|+-|-++ ..+..+.+++++++. ......++.+..|...--+.++|
T Consensus 80 l~~l~~~~v~vv~vs~~d~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~li 139 (176)
T 3kh7_A 80 LTRLAEQGVVIYGINYKDDN----AAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLI 139 (176)
T ss_dssp HHHHHHTTCEEEEEEESCCH----HHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEE
T ss_pred HHHHHHCCCEEEEEeCCCCH----HHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEE
Confidence 44444444556666544333 334556677777653 45567788888887632223444
No 83
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=37.04 E-value=14 Score=29.97 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=32.7
Q ss_pred chhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHh
Q 033552 19 DPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 68 (117)
Q Consensus 19 t~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~ 68 (117)
+...++.-.+-++++ |++..+....+..++.+.++|++.+.+|.+|-.
T Consensus 107 ~~~~l~~aD~vllVv--D~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 107 ARRVFYRADCGILVT--DSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLG 154 (423)
T ss_dssp HHHHHTSCSEEEEEC--SSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTT
T ss_pred HHHHHhcCCEEEEEE--eCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCC
Confidence 344555544444444 666555567777788889999999999987643
No 84
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=36.94 E-value=42 Score=23.09 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=47.1
Q ss_pred chhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhh---cCCCcceEEEEEeecCC
Q 033552 19 DPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA---GATKRPTCCVLVLTKPT 86 (117)
Q Consensus 19 t~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A---~G~~~~~svv~I~~~~~ 86 (117)
.++.+-.-+..+|||..-....-+-..+....+++||.+....|.+.-..- .+-.|.++++++..+|.
T Consensus 56 ~l~~ll~~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~aAcrTyNiL~~EgR~VaAaLi~~~~~ 126 (132)
T 2gm2_A 56 HMDAVLALNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVGGLE 126 (132)
T ss_dssp TSHHHHHHCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEECCCCC
T ss_pred HHHHHHhcCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEccCChh
Confidence 344444445899999998886445566778889999999999998776632 32235577777766543
No 85
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=36.62 E-value=85 Score=24.67 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=33.3
Q ss_pred cEEEEeCCCC---CcchheeHHHHhhhCCCCEEEECC--HhHHHhhc--CCCcceEEEEEee
Q 033552 29 RLCVIAGNIS---PIDVITHVPILCEESDIPYIYVAS--KEDLANAG--ATKRPTCCVLVLT 83 (117)
Q Consensus 29 ~LViLA~Das---p~~i~~~i~~lce~~~IP~i~v~t--K~eLG~A~--G~~~~~svv~I~~ 83 (117)
+.+|-..|.+ ...+...+..+|+++||||-.+.+ -.+.|.+. +...+++.+.+-.
T Consensus 254 G~~i~~~d~~~~~~~~l~~~l~~~a~~~gIp~q~~~~ggGtDa~~i~~a~~Gipt~~igvp~ 315 (355)
T 3kl9_A 254 GTLIRFYDPGHLLLPGMKDFLLTTAEEAGIKYQYYCGKGGTDAGAAHLKNGGVPSTTIGVCA 315 (355)
T ss_dssp CEEEEEEETTEECCHHHHHHHHHHHHHTTCCEEEEECSSCCTHHHHTTSTTCCCEEEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhCCCCCEEEEccCc
Confidence 3555544433 136889999999999999988653 23444332 2224566566543
No 86
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=36.45 E-value=93 Score=25.77 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=24.8
Q ss_pred eHHHHhhhCCCCEEEECCHhHHHhhcCC
Q 033552 45 HVPILCEESDIPYIYVASKEDLANAGAT 72 (117)
Q Consensus 45 ~i~~lce~~~IP~i~v~tK~eLG~A~G~ 72 (117)
.+..+|+.+|++++.+.+.++|-.++..
T Consensus 537 d~~~~a~a~G~~~~~v~~~~el~~al~~ 564 (604)
T 2x7j_A 537 DFKHAAALYGGTYSCPASWDEFKTAYAP 564 (604)
T ss_dssp CTHHHHHHTTCEEECCSSHHHHHHHCCC
T ss_pred CHHHHHHHcCCeEEecCCHHHHHHHHHH
Confidence 5677999999999999999999988753
No 87
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=36.41 E-value=52 Score=22.42 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=33.5
Q ss_pred chhhhhcCCc-cEEEEeCCCCCcchheeHHHHhhhCCCC--EEEEC-CHhHHHhhcCCC
Q 033552 19 DPLPLLFHEC-RLCVIAGNISPIDVITHVPILCEESDIP--YIYVA-SKEDLANAGATK 73 (117)
Q Consensus 19 t~kaL~kg~~-~LViLA~Dasp~~i~~~i~~lce~~~IP--~i~v~-tK~eLG~A~G~~ 73 (117)
..+.++...+ .++-|+.|. + .....+++++++| |-.+. ...+++++.|..
T Consensus 58 ~~~~~~~~gv~~vv~Is~d~-~----~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 58 QAAAIHGKGVDIIACMAVND-S----FVMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp THHHHHHTTCCEEEEEESSC-H----HHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHCCCCEEEEEeCCC-H----HHHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 3344555557 788888772 2 2356688888887 65554 467889988875
No 88
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=35.72 E-value=19 Score=29.28 Aligned_cols=58 Identities=22% Similarity=0.125 Sum_probs=37.4
Q ss_pred ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcC---CCcceEEEEEeecCCCC
Q 033552 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA---TKRPTCCVLVLTKPTKG 88 (117)
Q Consensus 28 ~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G---~~~~~svv~I~~~~~~~ 88 (117)
+.+||.|.|..+ +-..+...|++++||+..+++. +++...= ..+.-..++|++++...
T Consensus 73 ~~lVi~at~~~~--~n~~i~~~a~~~~i~vn~~d~~-e~~~~~~pa~~~~~~l~iaIsT~Gksp 133 (457)
T 1pjq_A 73 CWLAIAATDDDT--VNQRVSDAAESRRIFCNVVDAP-KAASFIMPSIIDRSPLMVAVSSGGTSP 133 (457)
T ss_dssp CSEEEECCSCHH--HHHHHHHHHHHTTCEEEETTCT-TSSSEECCEEEEETTEEEEEECTTSCH
T ss_pred ccEEEEcCCCHH--HHHHHHHHHHHcCCEEEECCCc-ccCceEeeeEEEeCCeEEEEECCCCCh
Confidence 678888887663 4567888999999997666654 4443321 01122357888777544
No 89
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=35.07 E-value=86 Score=24.12 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=39.4
Q ss_pred CCCCcchheeHHHHhhhCCCCEEEECCH------hHHH-----hhcCCCcceEEEEEeecCCCCccchHHHHhhHHHHHH
Q 033552 36 NISPIDVITHVPILCEESDIPYIYVASK------EDLA-----NAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTL 104 (117)
Q Consensus 36 Dasp~~i~~~i~~lce~~~IP~i~v~tK------~eLG-----~A~G~~~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e 104 (117)
+.+|.+ +..+.+++++++|+++++.+. +.|- +..|.+ +..+ +...|.... ....++|-++++.
T Consensus 229 eps~~~-l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~~~~A~e~gv~--v~~~-l~~d~l~~~--~~~~~~Y~~~m~~ 302 (313)
T 1toa_A 229 EASAHD-MQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVVQ--IGGE-LFSDAMGDA--GTSEGTYVGMVTH 302 (313)
T ss_dssp CCCHHH-HHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCCCE--EEEE-ECSSSCCCT--TSGGGSHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHccchhhhcCCc--eeee-eeccCCCCC--CCCccCHHHHHHH
Confidence 344544 778888999999999998633 2344 333332 2212 223343221 1234578877777
Q ss_pred HHHHHHh
Q 033552 105 VVEDVKE 111 (117)
Q Consensus 105 ~~~~~~~ 111 (117)
-.+.+.+
T Consensus 303 n~~~l~~ 309 (313)
T 1toa_A 303 NIDTIVA 309 (313)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 90
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=34.56 E-value=15 Score=23.65 Aligned_cols=34 Identities=29% Similarity=0.193 Sum_probs=23.4
Q ss_pred EEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 32 VIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 32 iLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
++|.=.+ .+-.+|...++++|||++.-. .|.+++
T Consensus 20 VvAKG~~--~~A~~I~~~A~e~~VPi~e~~---~LAr~L 53 (83)
T 3bzy_B 20 VIETGKD--AKALQIIKLAELYDIPVIEDI---PLARSL 53 (83)
T ss_dssp EEEEEET--HHHHHHHHHHHHTTCCEEECH---HHHHHH
T ss_pred EEEEeCc--HHHHHHHHHHHHcCCCEEeCH---HHHHHH
Confidence 3444444 368899999999999997654 344443
No 91
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=34.53 E-value=48 Score=24.61 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=39.0
Q ss_pred CccceeeeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHH
Q 033552 9 HSFNCVGVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDL 66 (117)
Q Consensus 9 ~~~~~vG~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eL 66 (117)
+...+.|+.+..+.+++..+..++||--.. -...+.+.|.+.||.-++-++--.|
T Consensus 130 ~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~---~aq~v~d~lv~~GIk~I~nFap~~l 184 (212)
T 3keo_A 130 DGIPVYGISTINDHLIDSDIETAILTVPST---EAQEVADILVKAGIKGILSFSPVHL 184 (212)
T ss_dssp TCCBEEEGGGHHHHC-CCSCCEEEECSCGG---GHHHHHHHHHHHTCCEEEECSSSCC
T ss_pred CCeEEeCHHHHHHHHHHcCCCEEEEecCch---hHHHHHHHHHHcCCCEEEEcCCccc
Confidence 445666766666667777888899887433 2456788888889998888876655
No 92
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=34.28 E-value=26 Score=25.20 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=37.9
Q ss_pred cceeeeecc-hhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 11 FNCVGVVND-PLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 11 ~~~vG~kqt-~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
-.++=+++. .+.|++-+--++++.+ +....-...+..++|. +||++...
T Consensus 19 a~~~~i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~ 68 (174)
T 1ytl_A 19 ATLLEKGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATG 68 (174)
T ss_dssp CEECCCHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEET
T ss_pred ceeccHHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcc
Confidence 345556776 7888988888888888 8643446778899999 99999773
No 93
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=33.93 E-value=14 Score=28.10 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCCcchheeHHHHhhhCCCCEEEEC
Q 033552 37 ISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 37 asp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
.||.+ +..+.+++++++|+++|+.
T Consensus 196 ps~~~-l~~l~~~ik~~~v~~if~e 219 (282)
T 3mfq_A 196 VANSD-MIETVNLIIDHNIKAIFTE 219 (282)
T ss_dssp CCHHH-HHHHHHHHHHHTCCEEECB
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEe
Confidence 34444 6677778888888888875
No 94
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=33.64 E-value=21 Score=23.62 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=27.9
Q ss_pred CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhh
Q 033552 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 69 (117)
Q Consensus 27 ~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A 69 (117)
.+.++++.-|++..+-...+.....+.++|++.+.+|.+|-..
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKS 123 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccc
Confidence 5778888888764221122222234469999999999998543
No 95
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=33.30 E-value=17 Score=23.37 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=27.0
Q ss_pred ccEEEEeCCCCC--cchheeHHHHhhhCCCCEEEECCHhHHHh
Q 033552 28 CRLCVIAGNISP--IDVITHVPILCEESDIPYIYVASKEDLAN 68 (117)
Q Consensus 28 ~~LViLA~Dasp--~~i~~~i~~lce~~~IP~i~v~tK~eLG~ 68 (117)
+..+++--|++. ......+..+..+.++|++.+.+|.+|-.
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 444444444442 22345566777778999999999988754
No 96
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=33.01 E-value=84 Score=21.65 Aligned_cols=67 Identities=3% Similarity=-0.053 Sum_probs=46.1
Q ss_pred chhhhhcC--CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhh---cCCCcceEEEEEeecC
Q 033552 19 DPLPLLFH--ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA---GATKRPTCCVLVLTKP 85 (117)
Q Consensus 19 t~kaL~kg--~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A---~G~~~~~svv~I~~~~ 85 (117)
.++.+..- +..+|||..-....-+-..+....+++||.+....|.+.-..- .+-.|.+++++|...|
T Consensus 57 ~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~aAcrTyNiL~~EgR~VaAaLi~~~~ 128 (135)
T 2fvt_A 57 SLQRVFDNANAIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAVPL 128 (135)
T ss_dssp TTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECCCT
T ss_pred HHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEcCCCc
Confidence 44555333 4899999998875444566777889999999999998776632 3233557666766544
No 97
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=32.31 E-value=74 Score=24.42 Aligned_cols=63 Identities=8% Similarity=-0.040 Sum_probs=48.9
Q ss_pred cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCC-CEEEECCHhHHHhhcCCCcceEEEEEee
Q 033552 18 NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDI-PYIYVASKEDLANAGATKRPTCCVLVLT 83 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~I-P~i~v~tK~eLG~A~G~~~~~svv~I~~ 83 (117)
|...+..-|--.+++++.+.++. -...+...|++.|. +++.+.|.+||-+|.... +-.++|..
T Consensus 134 qi~ea~~~GAD~VlLi~a~L~~~-~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~g--a~iIGinn 197 (272)
T 3tsm_A 134 QVYEARSWGADCILIIMASVDDD-LAKELEDTAFALGMDALIEVHDEAEMERALKLS--SRLLGVNN 197 (272)
T ss_dssp HHHHHHHTTCSEEEEETTTSCHH-HHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSC--CSEEEEEC
T ss_pred HHHHHHHcCCCEEEEcccccCHH-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CCEEEECC
Confidence 56677778888888899988764 47788889999997 678899999999887653 44566653
No 98
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=32.12 E-value=82 Score=21.58 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=43.0
Q ss_pred CCccEEEEeCCCCCcch--heeHHHHhhhCCCCEEEECC--------------HhHHHhhcCCCcceEEEEEeecCCCCc
Q 033552 26 HECRLCVIAGNISPIDV--ITHVPILCEESDIPYIYVAS--------------KEDLANAGATKRPTCCVLVLTKPTKGE 89 (117)
Q Consensus 26 g~~~LViLA~Dasp~~i--~~~i~~lce~~~IP~i~v~t--------------K~eLG~A~G~~~~~svv~I~~~~~~~~ 89 (117)
+..+.+||-.|..+.+- .......+++.+|++..++- .++|-...+...+.-+.. ..
T Consensus 107 ~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~-~~------ 179 (200)
T 1v7p_C 107 SATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFN-VS------ 179 (200)
T ss_dssp TSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEE-ES------
T ss_pred CCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEE-cC------
Confidence 45678899889876432 12334556778998877653 467777666542221122 22
Q ss_pred cchHHHHhhHHHHHHHHHHHH
Q 033552 90 LGQEEQDKLKADYTLVVEDVK 110 (117)
Q Consensus 90 ~~~~e~~~~~~~~~e~~~~~~ 110 (117)
+.+.+.++|+++.+.+=
T Consensus 180 ----~~~~l~~i~~~i~~~ic 196 (200)
T 1v7p_C 180 ----DEAALLEKAGTLGEQIF 196 (200)
T ss_dssp ----SSGGGHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHhhhc
Confidence 13456666777666553
No 99
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=31.13 E-value=32 Score=20.16 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.0
Q ss_pred HHHHhhHHHHHHHHHHHHhhh
Q 033552 93 EEQDKLKADYTLVVEDVKELA 113 (117)
Q Consensus 93 ~e~~~~~~~~~e~~~~~~~l~ 113 (117)
++.+.+-++|+|+..+|+|-.
T Consensus 22 ~~he~l~k~~~ell~evkkse 42 (50)
T 3qf7_D 22 ENHEKLLKILDELLDEVKKSE 42 (50)
T ss_dssp TTHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999998743
No 100
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=30.79 E-value=39 Score=25.70 Aligned_cols=66 Identities=11% Similarity=0.192 Sum_probs=36.8
Q ss_pred CCCCcchheeHHHHhhhCCCCEEEECCH------hHHHhhcCCCcceEEEEEeecCCCCccchHHHHhhHHHHHHHHHHH
Q 033552 36 NISPIDVITHVPILCEESDIPYIYVASK------EDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDV 109 (117)
Q Consensus 36 Dasp~~i~~~i~~lce~~~IP~i~v~tK------~eLG~A~G~~~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 109 (117)
+.+|.+ +..+.+++++++|+++|+.+. +.|-+..|. -++.+ + |.... . ++.++|-+++..-.+.|
T Consensus 211 eps~~~-l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~----~v~~l-~-pl~~~-~-~~~~~Y~~~m~~n~~~l 281 (286)
T 3gi1_A 211 EPSPRQ-LKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGA----KVKTL-S-PLEAA-P-SGNKTYLENLRANLEVL 281 (286)
T ss_dssp -CCHHH-HHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTC----EEEEC-C-CSCSC-C-SSSCCHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCC----eEEEe-c-ccccC-C-CCcCCHHHHHHHHHHHH
Confidence 344544 778888999999999998643 334444443 23333 1 22110 0 12347777777666555
Q ss_pred H
Q 033552 110 K 110 (117)
Q Consensus 110 ~ 110 (117)
.
T Consensus 282 ~ 282 (286)
T 3gi1_A 282 Y 282 (286)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=30.73 E-value=60 Score=22.95 Aligned_cols=43 Identities=16% Similarity=0.066 Sum_probs=24.1
Q ss_pred hhhhhcCC-ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 20 PLPLLFHE-CRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 20 ~kaL~kg~-~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
++.+..+. -++++...|.+..+....+...+.+.+||++.+.+
T Consensus 64 ~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 64 LENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEec
Confidence 44444444 45666555543111122344566778999999875
No 102
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=30.04 E-value=56 Score=25.33 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=50.3
Q ss_pred eeecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCC-CEEEECCHhHHHhhcCCCcceEEEEEe
Q 033552 15 GVVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDI-PYIYVASKEDLANAGATKRPTCCVLVL 82 (117)
Q Consensus 15 G~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~I-P~i~v~tK~eLG~A~G~~~~~svv~I~ 82 (117)
---|...+-.-|---+++|++-.++.. ...+...|.+.|. +.+.|.|.+||-+|+... +..++|-
T Consensus 115 d~yQI~eAr~~GADaILLI~a~L~~~~-l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~--a~iIGIN 180 (258)
T 4a29_A 115 KESQIDDAYNLGADTVLLIVKILTERE-LESLLEYARSYGMEPLILINDENDLDIALRIG--ARFIGIM 180 (258)
T ss_dssp SHHHHHHHHHHTCSEEEEEGGGSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHHTT--CSEEEEC
T ss_pred cHHHHHHHHHcCCCeeehHHhhcCHHH-HHHHHHHHHHHhHHHHHhcchHHHHHHHhcCC--CcEEEEe
Confidence 345667777778777888888888744 7788999999997 889999999999997654 3456663
No 103
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=30.02 E-value=51 Score=24.83 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=37.9
Q ss_pred CCCCcchheeHHHHhhhCCCCEEEECCH------hHHHhhcCCCcceEEEEEeecCCCCccchHHHHhhHHHHHHHHHHH
Q 033552 36 NISPIDVITHVPILCEESDIPYIYVASK------EDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDV 109 (117)
Q Consensus 36 Dasp~~i~~~i~~lce~~~IP~i~v~tK------~eLG~A~G~~~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 109 (117)
+.+|.+ +..+.+++++++|+++|+.+. +.|.+..|.+ ++.+ + |.... . ++.++|-+++....+.+
T Consensus 209 eps~~~-l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~----v~~l-~-~l~~~-~-~~~~~Y~~~m~~n~~~l 279 (284)
T 3cx3_A 209 EPSPRQ-LTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVG----LKTL-N-PLESD-P-QNDKTYLENLEENMSIL 279 (284)
T ss_dssp CCCSHH-HHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCC----EEEC-C-CSSSC-C-CSSCCHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCe----EEEe-c-CcccC-C-CCcccHHHHHHHHHHHH
Confidence 445554 778888999999999998632 3344444432 3333 2 22111 0 11347777777766655
Q ss_pred H
Q 033552 110 K 110 (117)
Q Consensus 110 ~ 110 (117)
.
T Consensus 280 ~ 280 (284)
T 3cx3_A 280 A 280 (284)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=29.82 E-value=34 Score=22.60 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=27.4
Q ss_pred ccEEEEeCCCCC--cchheeHHHHhhhCCCCEEEECCHhHH
Q 033552 28 CRLCVIAGNISP--IDVITHVPILCEESDIPYIYVASKEDL 66 (117)
Q Consensus 28 ~~LViLA~Dasp--~~i~~~i~~lce~~~IP~i~v~tK~eL 66 (117)
+.+|++--|++. ......+..+..+.++|++.+.+|.+|
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 456666666553 122345666788889999999999887
No 105
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=29.33 E-value=76 Score=26.51 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=35.1
Q ss_pred heeHHHHhhhCCCCEEEECCH------hHHHhhcCCCcceEEEEEeecCCCCccchHHHHhhHHHHHHHHHHH
Q 033552 43 ITHVPILCEESDIPYIYVASK------EDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDV 109 (117)
Q Consensus 43 ~~~i~~lce~~~IP~i~v~tK------~eLG~A~G~~~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 109 (117)
+.+|..+..++||-.||.-|+ ++|-..+.. +.+.++...+.+. .+-.++.|+++...|
T Consensus 299 v~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ip~----s~vg~Ls~dSsNi-----v~LI~~aY~~i~S~V 362 (454)
T 3vi3_B 299 IAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK----SAVGTLSANSSNV-----IQLIIDAYNSLSSEV 362 (454)
T ss_dssp HHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHHHSTT----EEEEEECTTCTTH-----HHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhcCCcEEEEEcCccchHHHHHHHhCCC----ceeeEccccchhH-----HHHHHHHHHHhheEE
Confidence 445666777889887777665 456666654 3566666444442 445556666665443
No 106
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=28.94 E-value=88 Score=24.13 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=39.2
Q ss_pred CCCCcchheeHHHHhhhCCCCEEEECCH--hHHHhhcCCCcceEEE-EEeecCCCCccchHHHHhhHHHHHHHHHHHHh
Q 033552 36 NISPIDVITHVPILCEESDIPYIYVASK--EDLANAGATKRPTCCV-LVLTKPTKGELGQEEQDKLKADYTLVVEDVKE 111 (117)
Q Consensus 36 Dasp~~i~~~i~~lce~~~IP~i~v~tK--~eLG~A~G~~~~~svv-~I~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 111 (117)
+.+|.+ +..+.+++++++|+++|+.+. ..+-+.+-...++-++ .+...|.... ....++|-+++..-.+.|.+
T Consensus 222 ePs~~~-l~~l~~~ik~~~v~~If~e~~~~~k~~~~ia~e~g~~v~~~l~~d~l~~~--~~~~~~Y~~~m~~n~~~l~~ 297 (307)
T 3ujp_A 222 QFTPKQ-VQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGNLYVDSLSTE--EGPVPTFLDLLEYDARVITN 297 (307)
T ss_dssp CCCHHH-HHHHHHHHHTTTCSEEEEETTSCSHHHHHTTTTTCCEEEEEECSSCCCCS--SSSCSSHHHHHHHHHHHHHT
T ss_pred CCCHHH-HHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHhCCceeeeeeccCCCCC--CCCccCHHHHHHHHHHHHHH
Confidence 344544 778889999999999998642 2233333333232222 2222232111 11234677777776666543
No 107
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=28.44 E-value=54 Score=24.51 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=25.3
Q ss_pred hhhhcCCccEEEEeCCCCC------cchheeHHHHhhhCCCCEEE
Q 033552 21 LPLLFHECRLCVIAGNISP------IDVITHVPILCEESDIPYIY 59 (117)
Q Consensus 21 kaL~kg~~~LViLA~Dasp------~~i~~~i~~lce~~~IP~i~ 59 (117)
++|++.+.++|++.+=-.| .+-...|.++|+++|++++.
T Consensus 156 ~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 156 AVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3444446788888532222 22367788999999998775
No 108
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=28.37 E-value=72 Score=20.69 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=24.4
Q ss_pred hhhhhcCCccEEEEe--CCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 20 PLPLLFHECRLCVIA--GNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 20 ~kaL~kg~~~LViLA--~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
++.+++|+- .+++. +|-.=.+....+...|.+.+|++..++
T Consensus 73 ~~~~~~G~~-V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 73 IELLEEGSD-VALVTDAGTPAISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp HHHHHTTCC-EEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHCCCe-EEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeC
Confidence 455566653 44443 553323335556667778899998776
No 109
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=28.31 E-value=91 Score=20.40 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=32.9
Q ss_pred hhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC-CHhHHHhhcCCC
Q 033552 20 PLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLANAGATK 73 (117)
Q Consensus 20 ~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~-tK~eLG~A~G~~ 73 (117)
.+.++...+.+|.|..|. + ..+..+++++++++..+. ...++.++.|..
T Consensus 56 ~~~~~~~~v~vv~vs~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (161)
T 3drn_A 56 WDLLKDYDVVVIGVSSDD-I----NSHKRFKEKYKLPFILVSDPDKKIRELYGAK 105 (161)
T ss_dssp HHHHHTTCEEEEEEESCC-H----HHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred HHHHHHcCCEEEEEeCCC-H----HHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence 344444446777777762 2 345668888888877666 456889998876
No 110
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=27.75 E-value=26 Score=27.48 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=30.5
Q ss_pred CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHh
Q 033552 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 68 (117)
Q Consensus 27 ~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~ 68 (117)
...+||.|.|.- +....+.+.|..++||++...+.---|.
T Consensus 125 ~~dvVv~~~d~~--~~r~~ln~~~~~~~ip~i~~~~~G~~G~ 164 (346)
T 1y8q_A 125 QFDAVCLTCCSR--DVIVKVDQICHKNSIKFFTGDVFGYHGY 164 (346)
T ss_dssp TCSEEEEESCCH--HHHHHHHHHHHHTTCEEEEEEEEBTEEE
T ss_pred CCCEEEEcCCCH--HHHHHHHHHHHHcCCCEEEEeecccEEE
Confidence 367898888854 3577899999999999999765544443
No 111
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=27.75 E-value=69 Score=23.35 Aligned_cols=42 Identities=7% Similarity=0.039 Sum_probs=27.4
Q ss_pred ecchhhhhcCC--ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 17 VNDPLPLLFHE--CRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 17 kqt~kaL~kg~--~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
...++++.++. ..++.+-+|-. + ..+..+|+++|||+..+..
T Consensus 18 ~~~l~~l~~~~l~~~I~~Vit~~~--~--~~v~~~A~~~gIp~~~~~~ 61 (212)
T 3av3_A 18 QAIVDAAKRGDLPARVALLVCDRP--G--AKVIERAARENVPAFVFSP 61 (212)
T ss_dssp HHHHHHHHTTCCCEEEEEEEESST--T--CHHHHHHHHTTCCEEECCG
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCC--C--cHHHHHHHHcCCCEEEeCc
Confidence 45577787773 55555555421 1 2466789999999987653
No 112
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=27.69 E-value=74 Score=24.66 Aligned_cols=69 Identities=12% Similarity=0.165 Sum_probs=39.1
Q ss_pred CCCCcchheeHHHHhhhCCCCEEEECCH------hHHHhhcCCCcceEEE-EEeecCCCCccchHHHHhhHHHHHHHHHH
Q 033552 36 NISPIDVITHVPILCEESDIPYIYVASK------EDLANAGATKRPTCCV-LVLTKPTKGELGQEEQDKLKADYTLVVED 108 (117)
Q Consensus 36 Dasp~~i~~~i~~lce~~~IP~i~v~tK------~eLG~A~G~~~~~svv-~I~~~~~~~~~~~~e~~~~~~~~~e~~~~ 108 (117)
+.+|.+ +..+.+++++++|+++++.+. +.|-+..|.+ ++ .+..++.... ....++|-+++.+-.+.
T Consensus 236 eps~~~-l~~l~~~ik~~~v~~If~e~~~~~~~~~~iA~e~g~~----v~~~l~~d~l~~~--~~~~~~Y~~~m~~n~~~ 308 (321)
T 1xvl_A 236 QFTPKQ-VQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGAR----FGGNLYVDSLSTE--EGPVPTFLDLLEYDARV 308 (321)
T ss_dssp SCCHHH-HHHHHHHHHTTTCSEEEEETTSCSHHHHHHHTTTCCE----EEEEECSSCCCCS--SSSCCSHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCcEEEEeCCCChHHHHHHHHhcCCc----eeeeecCCccCCC--CCCccCHHHHHHHHHHH
Confidence 344554 678888999999999998532 3454444443 22 2222333211 11234777777776666
Q ss_pred HHh
Q 033552 109 VKE 111 (117)
Q Consensus 109 ~~~ 111 (117)
+.+
T Consensus 309 l~~ 311 (321)
T 1xvl_A 309 ITN 311 (321)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 113
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=27.24 E-value=99 Score=21.98 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=40.1
Q ss_pred ccceeeee--cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC----------HhHHHhhcCCC
Q 033552 10 SFNCVGVV--NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS----------KEDLANAGATK 73 (117)
Q Consensus 10 ~~~~vG~k--qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t----------K~eLG~A~G~~ 73 (117)
....||.. -.+..|..-+.-|||......+.+.. +..++.|||++.+.. ...||+++|+.
T Consensus 40 ~~p~vg~~~~~n~E~i~~l~PDlIi~~~~~~~~~~~----~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 40 KLPDVGYMRTLNAEGILAMKPTMLLVSELAQPSLVL----TQIASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp GSCBCCCTTSCCHHHHHTTCCSEEEEETTCSCHHHH----HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred cCCccCCCCCCCHHHHHccCCCEEEEcCCcCchhHH----HHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 34456642 36788888899999887765432222 344678999999863 34578888764
No 114
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=26.79 E-value=84 Score=21.27 Aligned_cols=74 Identities=11% Similarity=0.137 Sum_probs=43.4
Q ss_pred CCccEEEEeCCCCCc-chh--eeHHHHhhhCCCCEEEEC--C-------HhHHHhhcCCCcceEEEEEeecCCCCccchH
Q 033552 26 HECRLCVIAGNISPI-DVI--THVPILCEESDIPYIYVA--S-------KEDLANAGATKRPTCCVLVLTKPTKGELGQE 93 (117)
Q Consensus 26 g~~~LViLA~Dasp~-~i~--~~i~~lce~~~IP~i~v~--t-------K~eLG~A~G~~~~~svv~I~~~~~~~~~~~~ 93 (117)
+..+.+||-.|..+. +-. ......+++.||++..++ + .++|-...+....--+..+ .
T Consensus 105 ~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~-~---------- 173 (194)
T 1mf7_A 105 NAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQV-N---------- 173 (194)
T ss_dssp TSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEE-S----------
T ss_pred CCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEe-C----------
Confidence 346788888888654 212 344456688899887664 2 5778777765311112222 2
Q ss_pred HHHhhHHHHHHHHHHHH
Q 033552 94 EQDKLKADYTLVVEDVK 110 (117)
Q Consensus 94 e~~~~~~~~~e~~~~~~ 110 (117)
+.+.+.++|+++.+.+-
T Consensus 174 ~~~~l~~~~~~i~~~ic 190 (194)
T 1mf7_A 174 NFEALKTIQNQLREKIF 190 (194)
T ss_dssp SGGGGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 13456667777776654
No 115
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=26.78 E-value=43 Score=25.35 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=26.3
Q ss_pred ccEEEEeCCCC-Cc-c--hheeHHHHhhhCCCCEEEECCHhHH
Q 033552 28 CRLCVIAGNIS-PI-D--VITHVPILCEESDIPYIYVASKEDL 66 (117)
Q Consensus 28 ~~LViLA~Das-p~-~--i~~~i~~lce~~~IP~i~v~tK~eL 66 (117)
+..+++--|++ |. + .+..+...++..++|.+.+.+|.+|
T Consensus 80 aD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 80 VDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDL 122 (302)
T ss_dssp CCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred cCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccC
Confidence 44566666665 42 1 2344555677789999999999887
No 116
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=26.60 E-value=41 Score=23.80 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=18.5
Q ss_pred eecchhhhhcCCccEEEEeCCCCC
Q 033552 16 VVNDPLPLLFHECRLCVIAGNISP 39 (117)
Q Consensus 16 ~kqt~kaL~kg~~~LViLA~Dasp 39 (117)
+...++.++..++-+||+++|...
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGNILK 44 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCC
Confidence 455566666678999999999874
No 117
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=26.55 E-value=2.1e+02 Score=21.61 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=39.8
Q ss_pred CCccceeeee-----cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC--------------HhHHHh
Q 033552 8 LHSFNCVGVV-----NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS--------------KEDLAN 68 (117)
Q Consensus 8 ~~~~~~vG~k-----qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t--------------K~eLG~ 68 (117)
+.+...||.- -.+..|..-+.-|||.... ++ ..+..+.+..|||++.+.. -..||+
T Consensus 72 ~~~~p~vG~~~~~~~~n~E~Ilal~PDLIi~~~~-~~----~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~ 146 (346)
T 2etv_A 72 LXXLPSVGPGGPGXLPDLESLITLQPDVVFITYV-DR----XTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGX 146 (346)
T ss_dssp GGGSCBSCCCSTTCCCCHHHHHHHCCSEEEEESC-CH----HHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHH
T ss_pred cccccccccCCCCCCCCHHHHhcCCCCEEEEeCC-cc----chHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHH
Confidence 3444567752 3677777778888887643 22 2345566778999999863 235788
Q ss_pred hcCCC
Q 033552 69 AGATK 73 (117)
Q Consensus 69 A~G~~ 73 (117)
++|++
T Consensus 147 ~lG~e 151 (346)
T 2etv_A 147 ILGRE 151 (346)
T ss_dssp HHTCH
T ss_pred HcCCH
Confidence 88864
No 118
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=26.46 E-value=16 Score=24.46 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=28.9
Q ss_pred CccEEEEeCCCCCcchheeHHHHhhhCCC-CEEEECCH--hHHHhhcCCC
Q 033552 27 ECRLCVIAGNISPIDVITHVPILCEESDI-PYIYVASK--EDLANAGATK 73 (117)
Q Consensus 27 ~~~LViLA~Dasp~~i~~~i~~lce~~~I-P~i~v~tK--~eLG~A~G~~ 73 (117)
.+.+|.|+.|. ...+..+++++++ ++-.+.+. .++.++.|..
T Consensus 77 ~~~vv~is~d~-----~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 121 (166)
T 3p7x_A 77 EGIVLTISADL-----PFAQKRWCASAGLDNVITLSDHRDLSFGENYGVV 121 (166)
T ss_dssp TSEEEEEESSC-----HHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCE
T ss_pred CCEEEEEECCC-----HHHHHHHHHHcCCCceEEccCCchhHHHHHhCCc
Confidence 35666777662 2345668888888 67666654 6899988875
No 119
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.36 E-value=1.2e+02 Score=18.69 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=34.6
Q ss_pred ecchhhhhcCCccEEEEeCCCCCcchheeHHHHh---hhCCCCEEEECCHhHHHhh
Q 033552 17 VNDPLPLLFHECRLCVIAGNISPIDVITHVPILC---EESDIPYIYVASKEDLANA 69 (117)
Q Consensus 17 kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lc---e~~~IP~i~v~tK~eLG~A 69 (117)
.+.++.+++....+||+--+....+-..-+..+. ...++|++.+.+..+-...
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~ 95 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGEL 95 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHH
Confidence 3456677888899999976654433333333333 3568999999987765543
No 120
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=26.31 E-value=65 Score=25.22 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=27.9
Q ss_pred CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 27 ~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
...+||.|.|-.+ .....+.+.|..+++|++....
T Consensus 208 ~~DlVvd~~Dn~~-~~r~~ln~~c~~~~~p~i~~~~ 242 (353)
T 3h5n_A 208 EADIWVVSADHPF-NLINWVNKYCVRANQPYINAGY 242 (353)
T ss_dssp CCSEEEECCCCST-THHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCEEEEecCChH-HHHHHHHHHHHHhCCCEEEEEE
Confidence 4668999988654 2477888999999999998753
No 121
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=26.18 E-value=2e+02 Score=21.23 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=31.6
Q ss_pred Cccceeeee--cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 9 HSFNCVGVV--NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 9 ~~~~~vG~k--qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
.....||.. -.+..|..-+.-|||...... .+ ..+.-++.|||++.+..
T Consensus 64 ~~ip~vG~~~~~n~E~i~~l~PDlIi~~~~~~-~~----~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 64 ENMAMPGDLNSVNIESLLALKPDVVFVTNYAP-SE----MIKQISDVNIPVVAISL 114 (326)
T ss_dssp GGCBCCBCSSCBCHHHHHHTCCSEEEEETTCC-HH----HHHHHHTTTCCEEEECS
T ss_pred hcCCcCCCCCCCCHHHHHccCCCEEEEeCCCC-hH----HHHHHHHcCCCEEEEec
Confidence 344556652 356778888888888775432 22 23344678999999863
No 122
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=26.17 E-value=34 Score=25.72 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=42.8
Q ss_pred ccceeeeecchhhhhcCC---ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 10 SFNCVGVVNDPLPLLFHE---CRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 10 ~~~~vG~kqt~kaL~kg~---~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
..++|.+.+.++.++.|+ .+.|+|.=|-.+.+....+-.+.+++|+|-.+.-.
T Consensus 44 gy~~vs~~~~~~~~~~~~~~~~~~v~lTfDDg~~~~~~~~~~~l~~~~~~atfFv~ 99 (268)
T 3vus_A 44 GYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPV 99 (268)
T ss_dssp TCEECCHHHHHHHHTTSSCCCTTEEEEEEEETBHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEecHHHHHHHHhcCCCCCCCEEEEEEeCCchhHHHHHHHHHHHcCCCEEEEEe
Confidence 468899999999998886 57899998888877677777788999999876543
No 123
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=25.95 E-value=40 Score=24.20 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=33.7
Q ss_pred ecchhhhhcCCccEEEEeCCCCCcc---------hheeHHHHhhhCCCCEEEECCHhHH
Q 033552 17 VNDPLPLLFHECRLCVIAGNISPID---------VITHVPILCEESDIPYIYVASKEDL 66 (117)
Q Consensus 17 kqt~kaL~kg~~~LViLA~Dasp~~---------i~~~i~~lce~~~IP~i~v~tK~eL 66 (117)
.+.++.+.+.++.+||+++|..... ....+....+..++|+..+..=.+.
T Consensus 41 ~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 99 (322)
T 2nxf_A 41 RDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEF 99 (322)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 3455556667899999999987522 1223444555568999998766555
No 124
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=25.71 E-value=19 Score=23.79 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=23.8
Q ss_pred EEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcC
Q 033552 32 VIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA 71 (117)
Q Consensus 32 iLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G 71 (117)
|+|.=.+ .+-.+|...++++|||++.-. .|.+++-
T Consensus 20 VvAKG~~--~~A~~I~e~A~e~gVPi~e~~---~LAr~Ly 54 (93)
T 2vt1_B 20 ISLIETN--QCALAVRKYANEVGIPTVRDV---KLARKLY 54 (93)
T ss_dssp EEEEEEH--HHHHHHHHHHHHTTCCEEECH---HHHHHHH
T ss_pred EEEEeCc--HHHHHHHHHHHHcCCCEEECH---HHHHHHH
Confidence 3444433 367899999999999997654 4444443
No 125
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=25.67 E-value=1.1e+02 Score=19.74 Aligned_cols=47 Identities=4% Similarity=-0.012 Sum_probs=30.4
Q ss_pred CCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC-H---hHHHhhcCCC
Q 033552 26 HECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS-K---EDLANAGATK 73 (117)
Q Consensus 26 g~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t-K---~eLG~A~G~~ 73 (117)
..+.+|.|..|-.. +-...+..++++++.++..+.. . .++.++.|..
T Consensus 63 ~~v~vv~is~d~~~-d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 113 (171)
T 2rli_A 63 PPVQPVFITVDPER-DDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVY 113 (171)
T ss_dssp CCEEEEEEESCSTT-CCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCC
T ss_pred CceEEEEEEECCCC-CCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeE
Confidence 35677777777432 2245677788888887766653 2 2577788865
No 126
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=25.53 E-value=40 Score=26.29 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=29.3
Q ss_pred ecchhhhhcCCccEEEEeCCCCCcc---------hheeHHHHhhhCCCCEEEECCHhH
Q 033552 17 VNDPLPLLFHECRLCVIAGNISPID---------VITHVPILCEESDIPYIYVASKED 65 (117)
Q Consensus 17 kqt~kaL~kg~~~LViLA~Dasp~~---------i~~~i~~lce~~~IP~i~v~tK~e 65 (117)
.+.++.++..++-+||+|+|..... +...+..+. ..++|++.+..=.+
T Consensus 50 ~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~-~~~~pv~~v~GNHD 106 (386)
T 3av0_A 50 KLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH-ENNIKVYIVAGNHE 106 (386)
T ss_dssp HHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH-HTTCEEEECCCGGG
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEcCCCC
Confidence 4556666778899999999975311 111222222 24899888864333
No 127
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=25.30 E-value=81 Score=22.74 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=23.6
Q ss_pred hhhhhcCC-ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 20 PLPLLFHE-CRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 20 ~kaL~kg~-~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
++.+..+. -++++.+.|.+. .......+.+.+||++.+.+
T Consensus 51 i~~l~~~~vdgiIi~~~~~~~---~~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 51 IENMINRGVDVLVIIPYNGQV---LSNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHTTCSEEEEECSSTTS---CHHHHHHHHTTTCEEEEESS
T ss_pred HHHHHHcCCCEEEEeCCChhh---hHHHHHHHHHCCCeEEEECC
Confidence 44444444 556666665443 22344566778999988864
No 128
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=25.28 E-value=44 Score=26.70 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.2
Q ss_pred hhhcCCccEEEEeCCCCC-cch-----heeHHHHhhhCCCCEEEEC
Q 033552 22 PLLFHECRLCVIAGNISP-IDV-----ITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 22 aL~kg~~~LViLA~Dasp-~~i-----~~~i~~lce~~~IP~i~v~ 61 (117)
.|++|++..||+++|.=- +-+ ...+-.+|+++|||+..+.
T Consensus 220 ~M~~~~Vd~VivGAd~V~aNGv~NKiGT~~lAl~Ak~~~vPfyV~a 265 (351)
T 1t5o_A 220 VMQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAA 265 (351)
T ss_dssp HHHTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEEEC
T ss_pred HhhcCCCCEEEECccchhhcCcccccCHHHHHHHHHHcCCCEEEeC
Confidence 467889999999999641 111 2345678899999998874
No 129
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=25.06 E-value=55 Score=23.11 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=30.4
Q ss_pred eecchhhhhcC--CccEEEEeCCCCCcc---hheeHHHHhhhCCCCEEEECC
Q 033552 16 VVNDPLPLLFH--ECRLCVIAGNISPID---VITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 16 ~kqt~kaL~kg--~~~LViLA~Dasp~~---i~~~i~~lce~~~IP~i~v~t 62 (117)
+...++.+++. ++.+||+++|..... -...+..+.+..++|+..+..
T Consensus 28 l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~G 79 (274)
T 3d03_A 28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPG 79 (274)
T ss_dssp HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34555666654 579999999986321 123444555666899988863
No 130
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=24.79 E-value=33 Score=26.61 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=20.1
Q ss_pred hheeHHHHhhhCCCCEEEECCHhHH
Q 033552 42 VITHVPILCEESDIPYIYVASKEDL 66 (117)
Q Consensus 42 i~~~i~~lce~~~IP~i~v~tK~eL 66 (117)
.+..+...|+..++|.+.+.+|.+|
T Consensus 105 ~i~r~L~~~~~~~~~~vivlnK~DL 129 (307)
T 1t9h_A 105 LLDRFLVLVEANDIQPIICITKMDL 129 (307)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred HHHHHHHHHHHCCCCEEEEEECCcc
Confidence 5666667788889999999888877
No 131
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=24.74 E-value=1.1e+02 Score=25.14 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=22.5
Q ss_pred eHHHHhhhCCCCEEEECCHhHHHhhc
Q 033552 45 HVPILCEESDIPYIYVASKEDLANAG 70 (117)
Q Consensus 45 ~i~~lce~~~IP~i~v~tK~eLG~A~ 70 (117)
.+..+|+.+|++++.+.+.++|-.++
T Consensus 496 d~~~~a~a~G~~~~~v~~~~~l~~al 521 (556)
T 3hww_A 496 HFEHAAAMFELKYHRPQNWQELETAF 521 (556)
T ss_dssp CSHHHHHHTTCEEECCSSHHHHHHHH
T ss_pred CHHHHHHHcCCcEEecCCHHHHHHHH
Confidence 46679999999999999999988664
No 132
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=24.70 E-value=20 Score=23.76 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=25.5
Q ss_pred ccEEEEeCCCC------CcchheeHHHHhhh-----CCCCEEEECCHhHHH
Q 033552 28 CRLCVIAGNIS------PIDVITHVPILCEE-----SDIPYIYVASKEDLA 67 (117)
Q Consensus 28 ~~LViLA~Das------p~~i~~~i~~lce~-----~~IP~i~v~tK~eLG 67 (117)
+..+++--|++ ..+....+..+..+ .++|++.+.+|.+|-
T Consensus 98 ~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 98 VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 55566666665 22234445555444 689999999998874
No 133
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.64 E-value=1e+02 Score=21.69 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=23.7
Q ss_pred chhhhhcCC-ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 19 DPLPLLFHE-CRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 19 t~kaL~kg~-~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
.++.+..+. -++++...|.+. .......+.+.+||++.+.+
T Consensus 56 ~~~~l~~~~vdgiI~~~~~~~~---~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 56 QILEFVHLKVDAIFITTLDDVY---IGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHTTCSEEEEECSCTTT---THHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCCEEEEecCChHH---HHHHHHHHHHcCCCEEEecC
Confidence 344444444 455555555432 22344566778999999874
No 134
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=24.64 E-value=82 Score=24.69 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=32.3
Q ss_pred cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 18 NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
+.++.+-.+....||++.+-.|. ..+.+.|++++||+....
T Consensus 71 ~rler~l~~~~P~IIltrg~~~p---eelie~A~~~~IPVL~T~ 111 (314)
T 1ko7_A 71 GRMRKLCRPETPAIIVTRDLEPP---EELIEAAKEHETPLITSK 111 (314)
T ss_dssp THHHHHCCTTCCCEEECTTCCCC---HHHHHHHHHTTCCEEECC
T ss_pred HHHHHHhcCCCCEEEEeCCCCCC---HHHHHHHHHCCCeEEEEC
Confidence 45556666788899999998763 357789999999998876
No 135
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=24.19 E-value=44 Score=22.39 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=30.4
Q ss_pred eecchhhhhcCCccEEEEeCCCCC-------cchheeHHHHhhhCCCCEEEEC
Q 033552 16 VVNDPLPLLFHECRLCVIAGNISP-------IDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 16 ~kqt~kaL~kg~~~LViLA~Dasp-------~~i~~~i~~lce~~~IP~i~v~ 61 (117)
+++.++.+++..++++++..-..+ ..+-..+..+|++++++|+.+.
T Consensus 88 l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 88 LRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 456677787766777776532121 1233457789999999999875
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=24.16 E-value=44 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=31.9
Q ss_pred chhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHH
Q 033552 19 DPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 67 (117)
Q Consensus 19 t~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG 67 (117)
++++++.-.+-++++-..-+..+...++..+..+.++|++.+.+|-+|-
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4455666555555543333223345667777888999999999998873
No 137
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=24.02 E-value=36 Score=26.26 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=39.4
Q ss_pred CCCCcchheeHHHHhhhCCCCEEEECC------HhHHHhhcCCCcceEEEEEeecCCCCccchH---HHHhhHHHHHHHH
Q 033552 36 NISPIDVITHVPILCEESDIPYIYVAS------KEDLANAGATKRPTCCVLVLTKPTKGELGQE---EQDKLKADYTLVV 106 (117)
Q Consensus 36 Dasp~~i~~~i~~lce~~~IP~i~v~t------K~eLG~A~G~~~~~svv~I~~~~~~~~~~~~---e~~~~~~~~~e~~ 106 (117)
+.+|.+ +..+.+++++++|+++|+.+ .+.|-+..|.+ ++.+ .|.... ..+ ..++|-+++..-.
T Consensus 222 eps~~~-l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~----v~~l--~~l~~~-~~~~~~~~~~Y~~~m~~n~ 293 (312)
T 2o1e_A 222 EPSAAS-LAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAK----TEVL--NTLEGL-SKEEQDKGLGYIDIMKQNL 293 (312)
T ss_dssp CCCHHH-HHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCE----EECC--CCTTCC-CHHHHHHCCCHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCc----EEEe--cccccc-ccccCCcccCHHHHHHHHH
Confidence 344444 67788889999999999853 24455555543 2222 233221 222 2347877777766
Q ss_pred HHHHh
Q 033552 107 EDVKE 111 (117)
Q Consensus 107 ~~~~~ 111 (117)
+.|.+
T Consensus 294 ~~l~~ 298 (312)
T 2o1e_A 294 DALKD 298 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 138
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=23.97 E-value=71 Score=20.63 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=27.6
Q ss_pred CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC---HhHHHhhcCCC
Q 033552 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS---KEDLANAGATK 73 (117)
Q Consensus 27 ~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t---K~eLG~A~G~~ 73 (117)
.+.++.|..|. + ..+..+++++++++..+.+ ..++.++.|..
T Consensus 70 ~~~vv~is~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~ 114 (160)
T 1xvw_A 70 DSAALAISVGP-P----PTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF 114 (160)
T ss_dssp SEEEEEEESCC-H----HHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred CcEEEEEeCCC-H----HHHHHHHHhcCCCceEEecCCcChHHHHHcCCc
Confidence 45666666652 2 2456677777877766665 67888888874
No 139
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=29.63 E-value=17 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=20.7
Q ss_pred EEEeCCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 31 CVIAGNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 31 ViLA~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
+++|.=.+. +-.+|...++++|||++.-.
T Consensus 19 ~VvAKG~~~--~A~~I~e~A~e~~VPi~e~~ 47 (87)
T 3b1s_B 19 VVVAKGKGT--IAQKIVEIAENYSIPVVRKP 47 (87)
Confidence 344544443 57889999999999996543
No 140
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=23.77 E-value=1.4e+02 Score=19.69 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=33.3
Q ss_pred hhhhhcCCcc-EEEEeCCCCCcchheeHHHHhhhCCC--CEEEECC-HhHHHhhcCCC
Q 033552 20 PLPLLFHECR-LCVIAGNISPIDVITHVPILCEESDI--PYIYVAS-KEDLANAGATK 73 (117)
Q Consensus 20 ~kaL~kg~~~-LViLA~Dasp~~i~~~i~~lce~~~I--P~i~v~t-K~eLG~A~G~~ 73 (117)
.+.++...+. ++.|+.|. + ..+..+++++++ |+-.+.+ ..++.++.|..
T Consensus 63 ~~~~~~~~v~~vv~Is~d~-~----~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 63 AGELKSKGVTEILCISVND-P----FVMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHHHTTCCCEEEEESSC-H----HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHHHCCCCEEEEEECCC-H----HHHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 3445545577 88888872 2 235668888888 7766654 56788888865
No 141
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=23.58 E-value=20 Score=27.59 Aligned_cols=49 Identities=16% Similarity=0.078 Sum_probs=34.2
Q ss_pred cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC--CHhHHHhh
Q 033552 18 NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA--SKEDLANA 69 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~--tK~eLG~A 69 (117)
+..+.|.+..+++++||.++.. . .-++.+-+..+||++-+- +-+..-+.
T Consensus 77 ~~~~~L~~~g~d~IVIACNTa~-~--~al~~lr~~~~iPvigiiepa~~~a~~~ 127 (274)
T 3uhf_A 77 EALDFFEQFQIDMLIIACNTAS-A--YALDALRAKAHFPVYGVIDAGVEATIKA 127 (274)
T ss_dssp HHHHHHTTSCCSEEEECCHHHH-H--HSHHHHHHHCSSCEECSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCChh-H--HHHHHHHHhcCCCEEcCCHHHHHHHHHh
Confidence 4556788888999999999775 2 125667788899998753 33444443
No 142
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=23.42 E-value=1.3e+02 Score=20.67 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=12.4
Q ss_pred cchhhhhcCCccEEEEeCCCCC
Q 033552 18 NDPLPLLFHECRLCVIAGNISP 39 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp 39 (117)
++++..++|+.. |++|.|+..
T Consensus 87 ~~~~~f~~g~~~-vLvaT~~~~ 107 (185)
T 2jgn_A 87 EALHQFRSGKSP-ILVATAVAA 107 (185)
T ss_dssp HHHHHHHHTSSS-EEEEEC---
T ss_pred HHHHHHHcCCCe-EEEEcChhh
Confidence 356677888877 556777654
No 143
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=23.24 E-value=65 Score=24.41 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=26.5
Q ss_pred hhhhcCCccEEEEeCCCCC------cchheeHHHHhhhCCCCEEEEC
Q 033552 21 LPLLFHECRLCVIAGNISP------IDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 21 kaL~kg~~~LViLA~Dasp------~~i~~~i~~lce~~~IP~i~v~ 61 (117)
++|++.+.++|++..=-.| .+-...|.++|+++|+.++.=.
T Consensus 176 ~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De 222 (437)
T 3g0t_A 176 SYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDL 222 (437)
T ss_dssp HHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEc
Confidence 3444567888888443333 1226668889999999887643
No 144
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=23.18 E-value=31 Score=25.60 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhh
Q 033552 26 HECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 69 (117)
Q Consensus 26 g~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A 69 (117)
+.+.++++--|++..+-...+.....+.++|++.+.+|.++-..
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred cCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 56777777777764333444556667789999999999988654
No 145
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=23.05 E-value=86 Score=21.15 Aligned_cols=55 Identities=7% Similarity=0.009 Sum_probs=35.2
Q ss_pred hhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCC-cceEEEEEee
Q 033552 22 PLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATK-RPTCCVLVLT 83 (117)
Q Consensus 22 aL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~-~~~svv~I~~ 83 (117)
+...|..+.|+=+.|-+ + ...+...+++.|+|+..+-+. |+ .-.. -..+|++|-+
T Consensus 50 W~~~g~~Kvvlk~~~e~--e-l~~l~~~a~~~gl~~~~i~DA---G~-Tei~~gt~TvlaigP 105 (121)
T 1wn2_A 50 WFREGQKKVVVKVESEE--E-LFKLKAEAEKLGLPNALIRDA---GL-TEIPPGTVTVLAVGP 105 (121)
T ss_dssp HHHTTCCEEEEEESSHH--H-HHHHHHHHHHTTCCEEEEECT---TC-TTSCTTCEEEEEEEE
T ss_pred HHHCCCcEEEEecCCHH--H-HHHHHHHHHHCCCCEEEEEcC---Cc-cccCCCCEEEEEecc
Confidence 34567778877777744 3 567788889999999777554 32 1111 1355677744
No 146
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=23.01 E-value=67 Score=23.53 Aligned_cols=40 Identities=8% Similarity=-0.072 Sum_probs=21.9
Q ss_pred hhhhhcCCcc-EEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 20 PLPLLFHECR-LCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 20 ~kaL~kg~~~-LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
++.+....+. +++.+.|.+. .......+.+.+||++.+.+
T Consensus 53 i~~li~~~vdgiii~~~~~~~---~~~~~~~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 53 VNNFVNQGYDAIIVSAVSPDG---LCPALKRAMQRGVKILTWDS 93 (316)
T ss_dssp HHHHHHTTCSEEEECCSSSST---THHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHcCCCEEEEeCCCHHH---HHHHHHHHHHCcCEEEEecC
Confidence 4444444444 5555555432 23344567778999887653
No 147
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=22.97 E-value=97 Score=25.49 Aligned_cols=71 Identities=8% Similarity=-0.015 Sum_probs=39.5
Q ss_pred CCCCcchheeHHHHhhhCCCCEEEECC-Hh------HHHhhc-CCCcceEEEEEeecC--CCC-ccchHHHHhhHHHHHH
Q 033552 36 NISPIDVITHVPILCEESDIPYIYVAS-KE------DLANAG-ATKRPTCCVLVLTKP--TKG-ELGQEEQDKLKADYTL 104 (117)
Q Consensus 36 Dasp~~i~~~i~~lce~~~IP~i~v~t-K~------eLG~A~-G~~~~~svv~I~~~~--~~~-~~~~~e~~~~~~~~~e 104 (117)
|+++ .....+..+|+++||||-..-. +. .+|... +...++..+.|-.=. +.. ....+|.+..-++|.+
T Consensus 367 ~~~~-~~~~~~~~ia~~~~Ip~Q~~~~gr~d~~gGstig~i~a~~Gi~tvdiGiP~l~MHS~~E~~~~~D~~~~~~l~~a 445 (450)
T 2glf_A 367 DAHA-EFVARVRKVLNEQGVIWQVATLGKVDQGGGGTIAKFFAERGSDVIDMGPALLGMHSPFEISSKADLFETYVAYRS 445 (450)
T ss_dssp BCCH-HHHHHHHHHHHHTTCCEEECCSSSTTSCCCCCTHHHHHTTTSCEEEEECEEBSTTSSSEEEEHHHHHHHHHHHHH
T ss_pred cCCH-HHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHhCCCCcEEEechhhcccchHHHHhhHHHHHHHHHHHHH
Confidence 4566 4688999999999999988543 43 233322 111234444432200 111 1235666666667766
Q ss_pred HHH
Q 033552 105 VVE 107 (117)
Q Consensus 105 ~~~ 107 (117)
+.+
T Consensus 446 f~~ 448 (450)
T 2glf_A 446 LME 448 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 148
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=22.87 E-value=94 Score=21.48 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=43.8
Q ss_pred cCCccEEEEeCCCCCcch--heeHHHHhhhCCCCEEEECC--------------HhHHHhhcCCCcceEEEEEeecCCCC
Q 033552 25 FHECRLCVIAGNISPIDV--ITHVPILCEESDIPYIYVAS--------------KEDLANAGATKRPTCCVLVLTKPTKG 88 (117)
Q Consensus 25 kg~~~LViLA~Dasp~~i--~~~i~~lce~~~IP~i~v~t--------------K~eLG~A~G~~~~~svv~I~~~~~~~ 88 (117)
.+..+.|||-.|..+.+- .......+++.||++..++- .++|-...+.....-...+ .
T Consensus 107 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~-~----- 180 (213)
T 1pt6_A 107 RGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNV-S----- 180 (213)
T ss_dssp TTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEE-S-----
T ss_pred CCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEe-C-----
Confidence 345788999999887542 23344566778998877652 2466665554211111222 2
Q ss_pred ccchHHHHhhHHHHHHHHHHHHhhh
Q 033552 89 ELGQEEQDKLKADYTLVVEDVKELA 113 (117)
Q Consensus 89 ~~~~~e~~~~~~~~~e~~~~~~~l~ 113 (117)
+.+.+.++|+++.+.|.++.
T Consensus 181 -----~~~~l~~i~~~l~~~i~~~~ 200 (213)
T 1pt6_A 181 -----DELALVTIVKTLGERIFALE 200 (213)
T ss_dssp -----SGGGGGGGHHHHHHHHTC--
T ss_pred -----CHHHHHHHHHHHHHhheecc
Confidence 13455567777777765543
No 149
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=22.71 E-value=48 Score=26.79 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=29.0
Q ss_pred hhhcCCccEEEEeCCCCC--cchh-----eeHHHHhhhCCCCEEEEC
Q 033552 22 PLLFHECRLCVIAGNISP--IDVI-----THVPILCEESDIPYIYVA 61 (117)
Q Consensus 22 aL~kg~~~LViLA~Dasp--~~i~-----~~i~~lce~~~IP~i~v~ 61 (117)
.|++|++..||+++|.=- .++. ..+-.+|+++|||+..+.
T Consensus 247 ~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~a 293 (374)
T 2yvk_A 247 TMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAA 293 (374)
T ss_dssp HHHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEEC
T ss_pred HhhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEec
Confidence 467899999999998531 1222 345678899999998874
No 150
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=22.69 E-value=9.7 Score=31.55 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=13.3
Q ss_pred cchhhhhcCCccEEEEeCCCCC
Q 033552 18 NDPLPLLFHECRLCVIAGNISP 39 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp 39 (117)
.+++..++|+..+ ++|.|+..
T Consensus 455 ~~~~~F~~g~~~V-LVaT~~~~ 475 (699)
T 4gl2_A 455 EVISKFRTGKINL-LIATTVAE 475 (699)
T ss_dssp HHHHHHCC---CC-SEEECSCC
T ss_pred HHHHHHhcCCCcE-EEEccccc
Confidence 5667788888775 57998875
No 151
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=22.57 E-value=44 Score=23.51 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=26.2
Q ss_pred ecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 17 VNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 17 kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
...++.+++.++.+||+++|....+.... .++.++|+..|.
T Consensus 42 ~~~l~~~~~~~~D~ii~~GDl~~~~~~~~----l~~l~~~~~~V~ 82 (190)
T 1s3l_A 42 RKAIEIFNDENVETVIHCGDFVSLFVIKE----FENLNANIIATY 82 (190)
T ss_dssp HHHHHHHHHSCCSEEEECSCCCSTHHHHH----GGGCSSEEEEEC
T ss_pred HHHHHHHhhcCCCEEEECCCCCCHHHHHH----HHhcCCCEEEEe
Confidence 44555666678999999999653232222 233467888876
No 152
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=22.57 E-value=49 Score=22.95 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=32.1
Q ss_pred eecchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 16 VVNDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 16 ~kqt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
+.+..+.|++-+--++++..-+.-......+..+++..++|++...
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~ 69 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATG 69 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECc
Confidence 4455667777665566665556533456789999999999998753
No 153
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=22.53 E-value=37 Score=27.72 Aligned_cols=41 Identities=7% Similarity=-0.116 Sum_probs=28.0
Q ss_pred cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE
Q 033552 18 NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV 60 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v 60 (117)
|..+.+++-+++-|+||+|+++ . ...|..+=...+|+++..
T Consensus 270 qIk~~vk~~~lksVFIATDa~~-~-~~ELk~~L~~~~v~vv~~ 310 (362)
T 3zy2_A 270 QIVEKVGSIGAKSVFVASDKDH-M-IDEINEALKPYEIEAHRQ 310 (362)
T ss_dssp HHHHHHHHHTCSEEEEEESSCC-C-HHHHHHHHGGGTCCEECC
T ss_pred HHHHHHHhcCCcEEEEecCCHH-H-HHHHHHHhhccCceEEEe
Confidence 3334445547999999999987 3 566666555567887654
No 154
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=22.46 E-value=58 Score=24.33 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=25.5
Q ss_pred hhhhcCCccEEEEeCCCCC------cchheeHHHHhhhCCCCEEE
Q 033552 21 LPLLFHECRLCVIAGNISP------IDVITHVPILCEESDIPYIY 59 (117)
Q Consensus 21 kaL~kg~~~LViLA~Dasp------~~i~~~i~~lce~~~IP~i~ 59 (117)
++|++.+.++|++.+=-.| .+-...|.++|+++|++++.
T Consensus 158 ~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 158 KLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3444456788887542222 12367788999999998775
No 155
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=22.10 E-value=79 Score=22.53 Aligned_cols=40 Identities=10% Similarity=-0.072 Sum_probs=23.7
Q ss_pred hhhh-hcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 20 PLPL-LFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 20 ~kaL-~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
++.+ .++--++++.+.|.+ . .......+.+.+||++.+.+
T Consensus 50 i~~l~~~~vdgiii~~~~~~--~-~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 50 IDSLAASGAKGFVICTPDPK--L-GSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHTTCCEEEEECSCGG--G-HHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHcCCCEEEEeCCCch--h-hHHHHHHHHHCCCcEEEeCC
Confidence 3344 444445666555543 1 33444567788999998884
No 156
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=22.06 E-value=58 Score=24.38 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=26.3
Q ss_pred hhhcCCccEEEEeC--CCCCcchheeHHHHhhhCCCCEEEEC
Q 033552 22 PLLFHECRLCVIAG--NISPIDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 22 aL~kg~~~LViLA~--Dasp~~i~~~i~~lce~~~IP~i~v~ 61 (117)
++++.+.++|++.. .-.+.+ ...|.++|+++|++++.=.
T Consensus 167 ~i~~~~~~~v~~~~~~~~~~~~-l~~i~~l~~~~~~~li~De 207 (425)
T 3ecd_A 167 LAQQHKPSLIIAGFSAYPRKLD-FARFRAIADSVGAKLMVDM 207 (425)
T ss_dssp HHHHHCCSEEEEECSCCCSCCC-HHHHHHHHHHHTCEEEEEC
T ss_pred HHhhcCCcEEEEccccCCCcCC-HHHHHHHHHHcCCEEEEEC
Confidence 34444678888863 222334 6789999999999877544
No 157
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=22.03 E-value=78 Score=19.42 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=40.9
Q ss_pred CCccceeeeecchhhhhcCCccEEEEeCC-CCC-cchheeHHHHhhhCCCCEEEEC--CH------hHHHhhcCCC-cce
Q 033552 8 LHSFNCVGVVNDPLPLLFHECRLCVIAGN-ISP-IDVITHVPILCEESDIPYIYVA--SK------EDLANAGATK-RPT 76 (117)
Q Consensus 8 ~~~~~~vG~kqt~kaL~kg~~~LViLA~D-asp-~~i~~~i~~lce~~~IP~i~v~--tK------~eLG~A~G~~-~~~ 76 (117)
...+..+...+--+.+.+|+.-+|.+-++ |.+ ......+..+++++++++.++. .. .++.+..|.. .|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt 90 (118)
T 1zma_A 11 IKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG 90 (118)
T ss_dssp TTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred HhhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCe
Confidence 33444444455556677777665655544 444 3344556677888777777662 12 3666777876 555
Q ss_pred E
Q 033552 77 C 77 (117)
Q Consensus 77 s 77 (117)
.
T Consensus 91 ~ 91 (118)
T 1zma_A 91 F 91 (118)
T ss_dssp E
T ss_pred E
Confidence 3
No 158
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=22.01 E-value=53 Score=24.93 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCCCCcchheeHHHHhhhCCCCEEEECCH------hHHHhhcCCCcceEEEEEeecCCCCccchHHHHhhHHHHHHHHHH
Q 033552 35 GNISPIDVITHVPILCEESDIPYIYVASK------EDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVED 108 (117)
Q Consensus 35 ~Dasp~~i~~~i~~lce~~~IP~i~v~tK------~eLG~A~G~~~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e~~~~ 108 (117)
.+.+|.+ +..+.+++++++|+++|+.+. +.|.+..|.+ ++. ++ |... +|-+++....+.
T Consensus 219 ~eps~~~-l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~----v~~-ld-~l~~--------~Y~~~m~~n~~~ 283 (291)
T 1pq4_A 219 QEPSAQE-LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAG----VEL-LD-PLAA--------DWSSNLKAVAQK 283 (291)
T ss_dssp BCCCHHH-HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCE----EEE-EC-TTCS--------SHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCe----EEE-Ec-Cchh--------hHHHHHHHHHHH
Confidence 5666755 778889999999999997532 4455555543 222 22 3321 577766666655
Q ss_pred HH
Q 033552 109 VK 110 (117)
Q Consensus 109 ~~ 110 (117)
+.
T Consensus 284 l~ 285 (291)
T 1pq4_A 284 IA 285 (291)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 159
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=21.71 E-value=21 Score=23.81 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=17.8
Q ss_pred chheeHHHHhhhCCCCEEEEC
Q 033552 41 DVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 41 ~i~~~i~~lce~~~IP~i~v~ 61 (117)
.+-.+|...++++|||++.-.
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~ 47 (98)
T 3c01_E 27 QRALAVRAYAEKVGVPVIVDI 47 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHHHcCCCeecCH
Confidence 367899999999999997654
No 160
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=21.68 E-value=66 Score=24.02 Aligned_cols=40 Identities=5% Similarity=-0.068 Sum_probs=26.7
Q ss_pred hhhhcCCccEEEEeCCCCC--cchheeHHHHhhhCCCCEEEEC
Q 033552 21 LPLLFHECRLCVIAGNISP--IDVITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 21 kaL~kg~~~LViLA~Dasp--~~i~~~i~~lce~~~IP~i~v~ 61 (117)
++|++.+.++|++..-..| .+ ...|.++|+++|++++.=.
T Consensus 163 ~~i~~~~~~~v~~~~~~~~~~~~-l~~l~~l~~~~~~~li~De 204 (420)
T 3gbx_A 163 KLAKEHKPKMIIGGFSAYSGVVD-WAKMREIADSIGAYLFVDM 204 (420)
T ss_dssp HHHHHHCCSEEEECCTTCCSCCC-HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhcCCeEEEEecCccCCccC-HHHHHHHHHHcCCEEEEEC
Confidence 4455556788888532222 33 6678899999999877644
No 161
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=21.58 E-value=57 Score=22.26 Aligned_cols=39 Identities=8% Similarity=-0.040 Sum_probs=25.7
Q ss_pred ccEEEEeCCCCC--cchheeHHHHhhhCCCCEEEECCHhHH
Q 033552 28 CRLCVIAGNISP--IDVITHVPILCEESDIPYIYVASKEDL 66 (117)
Q Consensus 28 ~~LViLA~Dasp--~~i~~~i~~lce~~~IP~i~v~tK~eL 66 (117)
+.++++--|++. ......+..+....++|++.+.+|.+|
T Consensus 116 ~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 116 LCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred cCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 444555555542 223445556677789999999998876
No 162
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=21.46 E-value=20 Score=27.41 Aligned_cols=40 Identities=28% Similarity=0.195 Sum_probs=30.8
Q ss_pred cchhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE
Q 033552 18 NDPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV 60 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v 60 (117)
+..+.|.+..+++++||.++... ..++.+-+..+||++.+
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~~---~al~~lr~~~~iPvigi 97 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTATA---AALYDIREKLDIPVIGV 97 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHH---HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCCCccH---HHHHHHHHhcCCCEEee
Confidence 44577778889999999997752 23566778889999985
No 163
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=21.24 E-value=38 Score=23.08 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=32.9
Q ss_pred chhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEEC-CHhHHHhhcCCC
Q 033552 19 DPLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLANAGATK 73 (117)
Q Consensus 19 t~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~-tK~eLG~A~G~~ 73 (117)
..+.++...+.++.|+.|. + ..+..+++++++++..+. ...++.++.|..
T Consensus 77 l~~~~~~~~~~vv~Vs~D~-~----~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 127 (179)
T 3ixr_A 77 LLPQFEQINATVLGVSRDS-V----KSHDSFCAKQGFTFPLVSDSDAILCKAFDVI 127 (179)
T ss_dssp HHHHHHTTTEEEEEEESCC-H----HHHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHCCCEEEEEcCCC-H----HHHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence 3344455557778887773 2 235667888888776654 466888888874
No 164
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=21.12 E-value=1.9e+02 Score=19.31 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=44.5
Q ss_pred chhhhhcCCccEEEEeCCCCCc-chheeHHHHhhhCCCCEEEECCHhHHHh---hcCCCcceEEEEE
Q 033552 19 DPLPLLFHECRLCVIAGNISPI-DVITHVPILCEESDIPYIYVASKEDLAN---AGATKRPTCCVLV 81 (117)
Q Consensus 19 t~kaL~kg~~~LViLA~Dasp~-~i~~~i~~lce~~~IP~i~v~tK~eLG~---A~G~~~~~svv~I 81 (117)
.++.+-.....+|||..-.... .+-..+.+..+++||.+....|.+.-.. ..+-.|.++++++
T Consensus 53 ~l~~ll~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A~rtyN~L~~EgR~VaAal~ 119 (122)
T 2ab1_A 53 DVKEVVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFH 119 (122)
T ss_dssp HHHHHHTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHhhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4556666779999999988764 2556777888999999999999887663 2333344554443
No 165
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=21.00 E-value=62 Score=21.45 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=24.5
Q ss_pred cEEEEeCCCCC-cc-hheeHHHHhhhCCCCEEEECCHhHH
Q 033552 29 RLCVIAGNISP-ID-VITHVPILCEESDIPYIYVASKEDL 66 (117)
Q Consensus 29 ~LViLA~Dasp-~~-i~~~i~~lce~~~IP~i~v~tK~eL 66 (117)
..+++--|++. .. .-..+..+..+.++|++.+.+|.+|
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADK 146 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 45555555542 11 1223456777889999999998776
No 166
>3byq_A Uncharacterized protein DUF1185; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 1.70A {Bordetella bronchiseptica RB50} SCOP: d.79.9.1
Probab=20.91 E-value=51 Score=24.67 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=29.7
Q ss_pred ECCHhHHHhhcCCC-cceEEEEEeecCCCCccchHHHHhhHHHHHHH
Q 033552 60 VASKEDLANAGATK-RPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 105 (117)
Q Consensus 60 v~tK~eLG~A~G~~-~~~svv~I~~~~~~~~~~~~e~~~~~~~~~e~ 105 (117)
..+-.|.|.+.... +.++++++..||+.+. -++|++-+.+.-.++
T Consensus 15 Ee~~~Egg~~~~~p~r~~aaaAVi~NP~AGr-~veDL~pl~~~~~~L 60 (193)
T 3byq_A 15 ETTYHENGPAPAQPLKLAASCAVIRNPYAGR-YEPDLMPFMAELRSL 60 (193)
T ss_dssp EEECCSSSCCCSSCEEEEEEEEEEECTTTTS-CCSCCHHHHHHHHHH
T ss_pred EEEecccCCCCCcceeEEEEEEEEcCCCcCc-chhhhHHHHHhhHHH
Confidence 34556778777766 5678888899999887 445555444444433
No 167
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=20.76 E-value=82 Score=15.84 Aligned_cols=19 Identities=0% Similarity=0.013 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHhhhcc
Q 033552 97 KLKADYTLVVEDVKELASS 115 (117)
Q Consensus 97 ~~~~~~~e~~~~~~~l~~~ 115 (117)
.+.+.-+|+..+++|+|.|
T Consensus 7 ~~~~~k~kf~nel~kiplp 25 (26)
T 2np0_B 7 MFAKLKEKFFNEINKXXXX 25 (26)
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 4556666788888888865
No 168
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=20.74 E-value=41 Score=22.22 Aligned_cols=47 Identities=6% Similarity=-0.012 Sum_probs=31.6
Q ss_pred eecchhhhhcCCccEEEEeCCCCC-------cchheeHHHHhhhCCCCEEEECC
Q 033552 16 VVNDPLPLLFHECRLCVIAGNISP-------IDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 16 ~kqt~kaL~kg~~~LViLA~Dasp-------~~i~~~i~~lce~~~IP~i~v~t 62 (117)
+.+.++.+++..++++++.--..| ..+-..+..+|+++++|++....
T Consensus 92 ~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 92 LTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 445677777777788777532222 13445678899999999987753
No 169
>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A*
Probab=20.69 E-value=61 Score=27.25 Aligned_cols=73 Identities=7% Similarity=-0.084 Sum_probs=43.6
Q ss_pred chheeHHHHhhhCCCCEEEECCHhH------HHhh----cCCCcceEEEEEee--cCCCC-ccchHHHHhhHHHHHHHHH
Q 033552 41 DVITHVPILCEESDIPYIYVASKED------LANA----GATKRPTCCVLVLT--KPTKG-ELGQEEQDKLKADYTLVVE 107 (117)
Q Consensus 41 ~i~~~i~~lce~~~IP~i~v~tK~e------LG~A----~G~~~~~svv~I~~--~~~~~-~~~~~e~~~~~~~~~e~~~ 107 (117)
.....+..+|++.||||-..-.+.+ +|.. .|+ ++..+.|-. =-+.. ....+|.+...+++.++.+
T Consensus 407 ~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi--~tvdIGiP~ryMHS~~E~~~~~D~~~~v~Ll~af~~ 484 (496)
T 3vat_A 407 VSEALIREVASSVGVPLQDLMVRNDSPCGTTIGPILASRLGL--RVLDLGSPQLAMHSIRETACTTGVLQTITLFKGFFE 484 (496)
T ss_dssp HHHHHHHHHHHHHTCCCEEECCCTTSCCCCCHHHHHHHHHTC--EEEEEECEEESTTSSSEEEESHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHhcccCC--cEEEecHhhhccccHHHHhhHHHHHHHHHHHHHHHH
Confidence 4688899999999999988654432 3322 343 344444322 00111 1234677777777777777
Q ss_pred HHHhhhcc
Q 033552 108 DVKELASS 115 (117)
Q Consensus 108 ~~~~l~~~ 115 (117)
...++...
T Consensus 485 ~~~~~~~~ 492 (496)
T 3vat_A 485 LFPSLSRS 492 (496)
T ss_dssp HHHHHHHT
T ss_pred hHHHHhhh
Confidence 77766543
No 170
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=20.62 E-value=38 Score=25.75 Aligned_cols=37 Identities=16% Similarity=-0.040 Sum_probs=28.7
Q ss_pred hhhhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEE
Q 033552 20 PLPLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYV 60 (117)
Q Consensus 20 ~kaL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v 60 (117)
.+.|.+..+.+++||.+.... .++.+-+..+||++.+
T Consensus 92 ~~~L~~~Gad~IVIaCNTah~----~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 92 LHMLEDAGAECIVIPCNTAHY----WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHTTCSEEECSCSGGGG----GHHHHHHHCSSEEECH
T ss_pred HHHHHHcCCCEEEEeCCCHHH----HHHHHHHHCCCCEEcc
Confidence 456677789999999998642 4677778889999764
No 171
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.58 E-value=1.3e+02 Score=21.23 Aligned_cols=38 Identities=8% Similarity=-0.105 Sum_probs=22.7
Q ss_pred chhhhhcCCc-cEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 19 DPLPLLFHEC-RLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 19 t~kaL~kg~~-~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
.++.+..+.+ ++++...+. ......+.+.+||++.+.+
T Consensus 55 ~~~~l~~~~vdgiIi~~~~~------~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 55 LLRAIGSRGFDGLILQSFSN------PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHTTTCSEEEEESSCC------HHHHHHHHTTSSCEEEESC
T ss_pred HHHHHHhCCCCEEEEecCCc------HHHHHHHHHCCCCEEEEec
Confidence 3455555554 455554443 2344566778999998875
No 172
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=20.57 E-value=35 Score=22.59 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=27.8
Q ss_pred CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhh
Q 033552 27 ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 69 (117)
Q Consensus 27 ~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A 69 (117)
.+.++++.-|++..+-...+.....+.++|++.+.+|.+|-..
T Consensus 85 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 85 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKS 127 (188)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred CCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcccc
Confidence 4667777777763221222333345579999999999998654
No 173
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.55 E-value=90 Score=22.34 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=24.1
Q ss_pred chhhhhcCC-ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCH
Q 033552 19 DPLPLLFHE-CRLCVIAGNISPIDVITHVPILCEESDIPYIYVASK 63 (117)
Q Consensus 19 t~kaL~kg~-~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK 63 (117)
.++.+.... -++++...|.+. .......+.+.+||++.+.+.
T Consensus 53 ~i~~l~~~~vdgiii~~~~~~~---~~~~~~~~~~~giPvV~~~~~ 95 (297)
T 3rot_A 53 FIESALATYPSGIATTIPSDTA---FSKSLQRANKLNIPVIAVDTR 95 (297)
T ss_dssp HHHHHHHTCCSEEEECCCCSST---THHHHHHHHHHTCCEEEESCC
T ss_pred HHHHHHHcCCCEEEEeCCCHHH---HHHHHHHHHHCCCCEEEEcCC
Confidence 344444444 445555555442 233455677789999998743
No 174
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=20.45 E-value=63 Score=25.74 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=29.2
Q ss_pred hhhcCCccEEEEeCCCCC--cch-----heeHHHHhhhCCCCEEEEC
Q 033552 22 PLLFHECRLCVIAGNISP--IDV-----ITHVPILCEESDIPYIYVA 61 (117)
Q Consensus 22 aL~kg~~~LViLA~Dasp--~~i-----~~~i~~lce~~~IP~i~v~ 61 (117)
.|++|++..||+++|.=- .++ ...+-.+|+++|||+..+.
T Consensus 222 ~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~a 268 (347)
T 1t9k_A 222 LMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAA 268 (347)
T ss_dssp HHHTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEEC
T ss_pred HhhcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEec
Confidence 467889999999998631 122 2345678899999998874
No 175
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=20.44 E-value=60 Score=24.00 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=26.5
Q ss_pred ccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 28 CRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 28 ~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
..+||-|.|.. +....+.+.|..+++|++....
T Consensus 119 ~DvVi~~~d~~--~~r~~l~~~~~~~~~p~i~~~~ 151 (251)
T 1zud_1 119 ADVVLDCTDNM--ATRQEINAACVALNTPLITASA 151 (251)
T ss_dssp CSEEEECCSSH--HHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEECCCCH--HHHHHHHHHHHHhCCCEEEEec
Confidence 57888898843 3477899999999999998643
No 176
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=20.40 E-value=87 Score=21.03 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=35.3
Q ss_pred hhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcCCC-cceEEEEEee
Q 033552 22 PLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATK-RPTCCVLVLT 83 (117)
Q Consensus 22 aL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G~~-~~~svv~I~~ 83 (117)
+...|..+.|+=+.|-+ + ...+...+++.|+|+..+-+- |+ .... -..+|++|-.
T Consensus 49 W~~~g~~KiVlk~~~e~--e-l~~l~~~a~~~gl~~~~i~DA---G~-Tei~~gs~TvlaigP 104 (120)
T 1xty_A 49 WLHQGQPKIIVKVNSLD--E-IISRAKKAETMNLPFSIIEDA---GK-TQLEPGTITCLGIGP 104 (120)
T ss_dssp HHHTTCCEEEEEESSHH--H-HHHHHHHHHHTTCCEEEEECC---SS-SSSCTTCEEEEEEEE
T ss_pred HHHCCCcEEEEecCCHH--H-HHHHHHHHHHCCCCEEEEEcC---Cc-cccCCCCeEEEEecc
Confidence 34578888888787744 2 667788899999998777544 32 1111 1355677744
No 177
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=20.30 E-value=1e+02 Score=21.42 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=21.3
Q ss_pred hhcC-CccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECC
Q 033552 23 LLFH-ECRLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 62 (117)
Q Consensus 23 L~kg-~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~t 62 (117)
+.++ --++++.+.|... .......+.+.+||++.+.+
T Consensus 55 ~~~~~vdgii~~~~~~~~---~~~~~~~~~~~~ipvV~~~~ 92 (276)
T 3ksm_A 55 LSQAPPDALILAPNSAED---LTPSVAQYRARNIPVLVVDS 92 (276)
T ss_dssp HHHSCCSEEEECCSSTTT---THHHHHHHHHTTCCEEEESS
T ss_pred HHhCCCCEEEEeCCCHHH---HHHHHHHHHHCCCcEEEEec
Confidence 3445 3455555544332 23344567788999998864
No 178
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=20.04 E-value=43 Score=22.38 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=22.0
Q ss_pred ccEEEEeCCCCCcchheeHHH----Hhhh-----CCCCEEEECCHhHHHh
Q 033552 28 CRLCVIAGNISPIDVITHVPI----LCEE-----SDIPYIYVASKEDLAN 68 (117)
Q Consensus 28 ~~LViLA~Dasp~~i~~~i~~----lce~-----~~IP~i~v~tK~eLG~ 68 (117)
+..+++--|++...-...+.. +.+. .++|++.+.+|.+|-.
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 556666667664222223322 2222 5899999999999854
No 179
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=20.03 E-value=13 Score=25.51 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=14.5
Q ss_pred cchhhhhcCCccEEEEeCCCCC
Q 033552 18 NDPLPLLFHECRLCVIAGNISP 39 (117)
Q Consensus 18 qt~kaL~kg~~~LViLA~Dasp 39 (117)
++++..++|+..+ ++|.|+..
T Consensus 72 ~~~~~f~~g~~~v-LvaT~~~~ 92 (172)
T 1t5i_A 72 SRYQQFKDFQRRI-LVATNLFG 92 (172)
T ss_dssp HHHHHHHTTSCSE-EEESSCCS
T ss_pred HHHHHHHCCCCcE-EEECCchh
Confidence 3566777887764 56888775
No 180
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=20.03 E-value=98 Score=22.63 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=32.3
Q ss_pred hhhcCCccEEEEeCCCCCcchheeHHHHhhhCCCCEEEECCHhHHHhhcC
Q 033552 22 PLLFHECRLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA 71 (117)
Q Consensus 22 aL~kg~~~LViLA~Dasp~~i~~~i~~lce~~~IP~i~v~tK~eLG~A~G 71 (117)
.++...+..+++--|++..+-...+.....+.++|++.+.+|.++-..-+
T Consensus 78 ~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp HHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT
T ss_pred HHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccc
Confidence 34445677777777776422122344445567999999999999865433
Done!