BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033555
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana
GN=MUB1 PE=1 SV=1
Length = 117
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 100/117 (85%)
Query: 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
MA V +QLEIKFRLTDGSDIGPK+FP AT+V+ LKE+V+S+WP+EKENGP+TVK+VKLIS
Sbjct: 1 MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60
Query: 61 AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKEKKAASQPKQNKCVCVIL 117
AGK+LEN++T+ + RSP+ ++ G VTTMHV++Q P TEKEKK PK NKCVC ++
Sbjct: 61 AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEKKPKGDPKMNKCVCSVM 117
>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana
GN=MUB2 PE=1 SV=1
Length = 124
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 99/120 (82%), Gaps = 3/120 (2%)
Query: 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
MA V+DQLEIKFRL DGSDIGPK FP AT+VATLKE+V++QWP++KENGP+TVKDVKLIS
Sbjct: 1 MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60
Query: 61 AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKEKKAASQP---KQNKCVCVIL 117
AG+ILENN+T+G+CRSP+ + G VTTMHV++Q TEKEKK KQNKCVC+
Sbjct: 61 AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVCLCF 120
>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp.
japonica GN=MUB1 PE=3 SV=1
Length = 119
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/118 (62%), Positives = 97/118 (82%), Gaps = 3/118 (2%)
Query: 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61
VQ+Q EIKFRL DG+DIGPK +PAA++VATLKES+++QWPK+KE GPRTV D+KLI+A
Sbjct: 3 GGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINA 62
Query: 62 GKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKE--KKAASQPKQNKCVCVIL 117
GKILENN+TL EC+SP+CD G+TTMHVVV+ P+++K+ K A +PK +C C I+
Sbjct: 63 GKILENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119
>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp.
japonica GN=MUB3 PE=3 SV=1
Length = 119
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 93/119 (78%), Gaps = 2/119 (1%)
Query: 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
MA ++ +E+KFRL DG+DIGP + +T+V+ LKE +L++WP++KE P+TV D+KLI+
Sbjct: 1 MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60
Query: 61 AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEK--EKKAASQPKQNKCVCVIL 117
AG+ILENNRTL E R P+ ++PGGV TMHVVV+PP +K EK+ A+ PKQN+C C IL
Sbjct: 61 AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana
GN=MUB6 PE=1 SV=1
Length = 119
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 91/119 (76%), Gaps = 2/119 (1%)
Query: 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
MA +D +E+KFRL DG+DIGP + + +V++LKE ++SQWPK+KEN P+TV D+KLI+
Sbjct: 1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60
Query: 61 AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEK--EKKAASQPKQNKCVCVIL 117
AGKILENNRTL E R P+C++PG + TMH+V++ P+ +K EK P +N+CVC IL
Sbjct: 61 AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119
>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana
GN=MUB5 PE=1 SV=1
Length = 120
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
+D +E+KFRL DG+DIGP + +VA+LKE +++QWPK+KEN P+ + +VKLI+ GKI
Sbjct: 4 EDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGGKI 63
Query: 65 LENNRTLGECRSPLC--DIPGGVTTMHVVVQPPSTEKEKKAASQ--PKQNKCVCVIL 117
LENN+TL E RS + ++PG VTTMHVV++PP EK+K+ P+++ CVC IL
Sbjct: 64 LENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120
>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana
GN=MUB3 PE=1 SV=1
Length = 118
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 81/115 (70%), Gaps = 2/115 (1%)
Query: 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
++ ++IKFRL DGSDIGP + AA++V LK+ V+S WPK K P+ + +VKLIS+GKI
Sbjct: 4 EESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKI 63
Query: 65 LENNRTLGECRSPLCDIPGGVTTMHVVVQP--PSTEKEKKAASQPKQNKCVCVIL 117
LENN+T+G+C++P DI GGV MHVVVQP ++ EKK PK C C IL
Sbjct: 64 LENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118
>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp.
japonica GN=MUB4 PE=2 SV=2
Length = 135
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 3/110 (2%)
Query: 11 KFRLTDGSDIGP-KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNR 69
KFRL DGSDIGP + AT+VA LK+ V++ WPK+K P+T DVKLIS GKILEN++
Sbjct: 26 KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85
Query: 70 TLGECRSPLCDIPGGVTTMHVVVQPPSTEK--EKKAASQPKQNKCVCVIL 117
+ +CR+P D+P TMHVVVQP S + +KK PK +C C IL
Sbjct: 86 NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKLPKTTRCSCTIL 135
>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana
GN=MUB4 PE=1 SV=1
Length = 120
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 81/117 (69%), Gaps = 4/117 (3%)
Query: 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
+D +E+KFRL DGSD+GP + +V+ LKE ++S+WPK+K+ P++ D+KLI+AGKI
Sbjct: 4 EDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKI 63
Query: 65 LENNRTLGECRSPLCDIPGGVTTMHVVVQ--PPSTEKEKKAASQ--PKQNKCVCVIL 117
LEN +T+ +C++P D+P V TMHVVVQ P EKK + P+++ C C I+
Sbjct: 64 LENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEAPQRSFCSCTIM 120
>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp.
japonica GN=MUB2 PE=2 SV=1
Length = 126
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
Query: 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKIL 65
+ +E++FRL DGSDIGP AT+V LKE VL++WP+ KE PRTV DV +I+AG++L
Sbjct: 12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71
Query: 66 ENNRTLGECRSPLCDIPGGVTTMHVVV---QPPSTEKEKKAASQPKQNKCVCVIL 117
ENNRTL E R+ + P G TMHVVV +P K+ A P++ C C IL
Sbjct: 72 ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIGCGCTIL 126
>sp|Q3AK05|Y1323_SYNSC UPF0182 protein Syncc9605_1323 OS=Synechococcus sp. (strain CC9605)
GN=Syncc9605_1323 PE=3 SV=1
Length = 914
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 43 PKEKENGPRTVKDVKLISAGKILENNRTLGECR 75
P ++E G T+++V++ +G +LE NR L + R
Sbjct: 377 PTDREEGASTLENVRIWDSGPLLEANRQLQQLR 409
>sp|O74803|RHP23_SCHPO UV excision repair protein rhp23 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1
Length = 368
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 15/63 (23%)
Query: 11 KFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRT 70
KF ++D S A T ++ LKE + +Q E V+ KLI +G+IL +++T
Sbjct: 12 KFVISDVS--------ADTKISELKEKIQTQQNYE-------VERQKLIYSGRILADDKT 56
Query: 71 LGE 73
+GE
Sbjct: 57 VGE 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,410,105
Number of Sequences: 539616
Number of extensions: 1562584
Number of successful extensions: 3469
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3447
Number of HSP's gapped (non-prelim): 25
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)